Miyakogusa Predicted Gene

Lj1g3v2658210.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2658210.1 Non Chatacterized Hit- tr|B7FGJ0|B7FGJ0_MEDTR
Uncharacterized protein OS=Medicago truncatula
GN=MTR_,58.43,2e-18,seg,NULL,CUFF.29397.1
         (93 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G01730.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    68   1e-12

>AT1G01730.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
           growth stages; Has 42 Blast hits to 42 proteins in 17
           species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi -
           1; Plants - 34; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr1:271002-271872 FORWARD
           LENGTH=224
          Length = 224

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 49/62 (79%), Gaps = 3/62 (4%)

Query: 32  RKRPLDSDVH---SNYFKLRAVVRDLRPHFIQVLQTPDFKNCKASEEIRERLKIVIKLCD 88
           RKR L++++    SNY+K+R +V+DLRPH ++VL+TPD +N KA  EI+E++K++++L +
Sbjct: 65  RKRALEANLQIESSNYYKMRLLVKDLRPHVLEVLRTPDLRNSKAVIEIQEKMKLMLQLYE 124

Query: 89  NM 90
            M
Sbjct: 125 EM 126