Miyakogusa Predicted Gene

Lj1g3v2656180.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2656180.1 Non Chatacterized Hit- tr|F6I613|F6I613_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,60,3e-16,
,CUFF.29394.1
         (79 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G00530.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    82   8e-17
AT1G01725.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    67   3e-12

>AT4G00530.1 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; INVOLVED IN:
          biological_process unknown; LOCATED IN: mitochondrion;
          EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9
          growth stages; BEST Arabidopsis thaliana protein match
          is: unknown protein (TAIR:AT1G01725.1); Has 1807 Blast
          hits to 1807 proteins in 277 species: Archae - 0;
          Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
          Viruses - 0; Other Eukaryotes - 339 (source: NCBI
          BLink). | chr4:233030-233592 REVERSE LENGTH=71
          Length = 71

 Score = 82.0 bits (201), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 34/65 (52%), Positives = 49/65 (75%)

Query: 4  MSPKSEKLVRRITIAVTVTASYFLLTADYGSQPNALDPIKKQLLSVESTVKDYIFGSKTE 63
          M+P+++K+VRR T+  T  ASYFLLT DYG +PN LDPIK+++L+ + +VK +IFG K E
Sbjct: 1  MNPQTDKVVRRTTMVATAVASYFLLTGDYGPEPNVLDPIKRKILAAQDSVKQFIFGPKGE 60

Query: 64 SQKKQ 68
             K+
Sbjct: 61 PSGKE 65


>AT1G01725.1 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; INVOLVED IN:
          biological_process unknown; LOCATED IN: endomembrane
          system; EXPRESSED IN: 23 plant structures; EXPRESSED
          DURING: 14 growth stages; BEST Arabidopsis thaliana
          protein match is: unknown protein (TAIR:AT4G00530.1);
          Has 20 Blast hits to 20 proteins in 7 species: Archae -
          0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20;
          Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
          | chr1:270016-270735 REVERSE LENGTH=62
          Length = 62

 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 46/58 (79%)

Query: 4  MSPKSEKLVRRITIAVTVTASYFLLTADYGSQPNALDPIKKQLLSVESTVKDYIFGSK 61
          M+P+ EK+V+  ++  T   SYFLLTADYG +PNALDPI++++LS + +VK++IF SK
Sbjct: 1  MNPQIEKVVKVTSVVATAVVSYFLLTADYGPEPNALDPIRQRILSAQDSVKEFIFPSK 58