Miyakogusa Predicted Gene

Lj1g3v2635110.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2635110.1 Non Chatacterized Hit- tr|B8BNV9|B8BNV9_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,40.87,0.00000000000003,seg,NULL; FAMILY NOT
NAMED,NULL,CUFF.29418.1
         (169 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G30280.1 | Symbols: RDM4, DMS4 | RNA-directed DNA methylation...   120   6e-28

>AT2G30280.1 | Symbols: RDM4, DMS4 | RNA-directed DNA methylation 4
           | chr2:12909804-12911860 REVERSE LENGTH=346
          Length = 346

 Score =  120 bits (300), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 71/179 (39%), Positives = 109/179 (60%), Gaps = 19/179 (10%)

Query: 1   MQHVETITSSEVTFDLVHSIVDXXXXXXXXXXXXXXXXXNFIKKDDCARKQDQLLFKAKQ 60
           ++H+ET+T SE T D++HS  +                    KKD+   +++Q L K+ Q
Sbjct: 76  VRHLETVTDSETTADIIHSFFESDHNEKSCSKGKFEERKIAFKKDN---RKEQRLTKSVQ 132

Query: 61  DIESLAKDTRFEQIWKSMKGNKGTEHEKALLEICNFYDIVRIDNDEKIKEVQQDVISLEE 120
             +  +++ RFEQIW+S KGNK   HEK     C+F+D++R+D +E+ ++  Q+  SLE+
Sbjct: 133 KQQIASENARFEQIWRSRKGNKEGIHEK-----CHFFDVIRVDTEER-RDNAQEFTSLED 186

Query: 121 KMLLSSFLPLLRDAVPIAASEIE--------ETYVYDFYTVKDEMHV-EDSSCS-YPLV 169
           + +L+SFLPLLR+ +P AA EIE        E YVYD+Y V +EM + EDSS + +PLV
Sbjct: 187 QKMLASFLPLLRECIPTAAEEIEADIQSSHTEEYVYDYYAVNEEMDISEDSSKNQFPLV 245