Miyakogusa Predicted Gene

Lj1g3v2628720.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2628720.1 tr|Q9M2D9|Q9M2D9_ARATH At3g61250 OS=Arabidopsis
thaliana GN=T20K12.150 PE=2 SV=1,44.87,3e-19, ,CUFF.29359.1
         (151 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G61250.1 | Symbols: AtMYB17, MYB17 | myb domain protein 17 | ...    99   8e-22

>AT3G61250.1 | Symbols: AtMYB17, MYB17 | myb domain protein 17 |
           chr3:22671306-22672551 FORWARD LENGTH=299
          Length = 299

 Score = 99.4 bits (246), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 70/156 (44%), Positives = 90/156 (57%), Gaps = 33/156 (21%)

Query: 1   MAQWEGARLEAEARLS--------SLNTTKTTHHCDHFLRMWNSEIGDSFRNFHKPDHNQ 52
           MAQWE AR+EAEARLS        S  +      CDHFLR+WNSEIG++FRN        
Sbjct: 147 MAQWESARVEAEARLSRESMLFSPSFYSGVVKTECDHFLRIWNSEIGEAFRN-------- 198

Query: 53  NKNINSFCLSPLSAGSSSNKCDSVSAVTTNAADPFGSSNNAVKQELLCAEEDVVQHHGSD 112
                   L+PL   + +++     A +T++A    S+N+   +E+       V  HGSD
Sbjct: 199 --------LAPLDESTITSQSPCSRATSTSSALLKSSTNSWGGKEV------TVAIHGSD 244

Query: 113 -SSCSNDLE-DSSDTALQLLLDFPIY-NDMSFLEGN 145
            S  SNDLE DS+D+ALQLLLDFPI  +DMSFLE N
Sbjct: 245 YSPYSNDLEDDSTDSALQLLLDFPISDDDMSFLEEN 280