Miyakogusa Predicted Gene

Lj1g3v2627570.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2627570.1 tr|Q6AWV5|Q6AWV5_ARATH At4g00525 OS=Arabidopsis
thaliana GN=At4g00525 PE=2 SV=1,42.4,1e-18, ,CUFF.29345.1
         (140 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G00525.1 | Symbols:  | unknown protein; Has 35333 Blast hits ...    77   4e-15

>AT4G00525.1 | Symbols:  | unknown protein; Has 35333 Blast hits to
           34131 proteins in 2444 species: Archae - 798; Bacteria -
           22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
           - 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
           chr4:231862-232769 FORWARD LENGTH=140
          Length = 140

 Score = 77.0 bits (188), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 65/112 (58%), Gaps = 6/112 (5%)

Query: 29  MAHKILEYRETLPDQLKSTLVSVLDAHRPLLPQLNPG-----ASEQNISREESSSAPEDP 83
           MA KI EYR+TLPD L++TL S L +H P+ P ++ G     +S   I+  +     E+ 
Sbjct: 27  MAKKISEYRQTLPDHLRNTLDSALSSHIPVFPNIDSGSDPLPSSCLTIAEAQVPGVLEEQ 86

Query: 84  ETAXXXXXXXXXISSNCSAMPIVLNRMKDCIAKIDKLDSYNAASIHPAFKKK 135
           ++          +S N + +P V+ RM++CI  IDKLDS    +IHPAFK++
Sbjct: 87  DSEEKWIQLKERMSRNAANIPKVVKRMRECIESIDKLDSLE-VTIHPAFKRQ 137