Miyakogusa Predicted Gene

Lj1g3v2626350.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2626350.1 Non Chatacterized Hit- tr|I3TAG0|I3TAG0_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,50,4e-19,seg,NULL,CUFF.29332.1
         (107 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G18620.1 | Symbols:  | Terpenoid synthases superfamily protei...    51   2e-07
AT4G36810.1 | Symbols: GGPS1 | geranylgeranyl pyrophosphate synt...    47   2e-06

>AT2G18620.1 | Symbols:  | Terpenoid synthases superfamily protein |
           chr2:8078317-8079360 FORWARD LENGTH=347
          Length = 347

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/32 (68%), Positives = 27/32 (84%)

Query: 76  FNFKSYMIQKATQVNQALDDAVSLQDPLKIHE 107
           F+F SYMI KA  VN+ALD AVSL++P+KIHE
Sbjct: 53  FDFTSYMIGKANAVNEALDSAVSLREPIKIHE 84


>AT4G36810.1 | Symbols: GGPS1 | geranylgeranyl pyrophosphate
           synthase 1 | chr4:17343513-17344628 FORWARD LENGTH=371
          Length = 371

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/32 (65%), Positives = 26/32 (81%)

Query: 76  FNFKSYMIQKATQVNQALDDAVSLQDPLKIHE 107
           F+F SY+I KA  VN+ALD AV L++PLKIHE
Sbjct: 74  FDFMSYIITKAELVNKALDSAVPLREPLKIHE 105