Miyakogusa Predicted Gene

Lj1g3v2626080.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2626080.1 Non Chatacterized Hit- tr|I3SZH1|I3SZH1_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,98.15,0.000000000000003,FBOX,F-box domain, cyclin-like;
F-box,F-box domain, cyclin-like; seg,NULL; no description,NULL;
F-bo,NODE_67840_length_169_cov_15.147929.path1.1
         (53 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G49610.1 | Symbols:  | F-box family protein | chr5:20131448-2...    49   6e-07

>AT5G49610.1 | Symbols:  | F-box family protein |
          chr5:20131448-20132527 REVERSE LENGTH=359
          Length = 359

 Score = 48.9 bits (115), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 22/32 (68%), Positives = 23/32 (71%)

Query: 20 SVLLPDELIEAILVRLPVSSLLRFKSVCKSWL 51
            L PDE+I  IL RLPV SL RFKSVCKSW 
Sbjct: 6  GALFPDEVILQILARLPVKSLFRFKSVCKSWY 37