Miyakogusa Predicted Gene
- Lj1g3v2624840.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v2624840.1 tr|A2Q3P8|A2Q3P8_MEDTR Flap endonuclease GEN-like
protein OS=Medicago truncatula GN=MTR_7g076290
PE=,79.25,0,XPGRADSUPER,DNA repair protein (XPGC)/yeast Rad;
XPG_I,XPG/RAD2 endonuclease; XPG_N,XPG N-terminal; ,CUFF.29307.1
(608 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G01880.1 | Symbols: | 5'-3' exonuclease family protein | chr... 638 0.0
AT1G01880.2 | Symbols: | 5'-3' exonuclease family protein | chr... 632 0.0
AT3G48900.2 | Symbols: | single-stranded DNA endonuclease famil... 122 8e-28
AT3G28030.1 | Symbols: UVH3, UVR1 | 5'-3' exonuclease family pro... 105 1e-22
AT3G48900.1 | Symbols: | single-stranded DNA endonuclease famil... 93 6e-19
AT5G26680.2 | Symbols: | 5'-3' exonuclease family protein | chr... 85 2e-16
AT5G26680.1 | Symbols: | 5'-3' exonuclease family protein | chr... 84 3e-16
AT1G29630.2 | Symbols: | 5'-3' exonuclease family protein | chr... 58 2e-08
AT1G29630.1 | Symbols: | 5'-3' exonuclease family protein | chr... 57 3e-08
AT1G18090.2 | Symbols: | 5'-3' exonuclease family protein | chr... 57 5e-08
AT1G18090.1 | Symbols: | 5'-3' exonuclease family protein | chr... 56 6e-08
>AT1G01880.1 | Symbols: | 5'-3' exonuclease family protein |
chr1:306558-308991 REVERSE LENGTH=599
Length = 599
Score = 638 bits (1646), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/614 (53%), Positives = 432/614 (70%), Gaps = 23/614 (3%)
Query: 1 MGVGGNFWDLLKPYARNEGFEFLRNKRVAVDLSFWIVQHRNAIKGNVRKPHLRVTFFRTI 60
MGVGGNFWDLL+PYA+ +GF+FLRNKRVAVDLSFWIVQH A+KG V KPHLR+TFFRTI
Sbjct: 1 MGVGGNFWDLLRPYAQQQGFDFLRNKRVAVDLSFWIVQHETAVKGFVLKPHLRLTFFRTI 60
Query: 61 NLFSKFGALPVFVVDGTPSPLKSQARITRFFRSSGIELASLPVPEEGVSAERNRSFSKYV 120
NLFSKFGA PVFVVDGTPSPLKSQARI+RFFRSSGI+ +LPV ++GVS ERN+ FS++V
Sbjct: 61 NLFSKFGAYPVFVVDGTPSPLKSQARISRFFRSSGIDTCNLPVIKDGVSVERNKLFSEWV 120
Query: 121 QECVELVELLGMPVLKAKGEAEALCAQLNSEGHVDACITADSDAFLFGAKCVIKCFSPNS 180
+ECVEL+ELLG+PVLKA GEAEALCAQLNS+G VDACIT DSDAFLFGA CVIK PNS
Sbjct: 121 RECVELLELLGIPVLKANGEAEALCAQLNSQGFVDACITPDSDAFLFGAMCVIKDIKPNS 180
Query: 181 KEPFECYYMSDIEAGLGLKRKHLIAITLLVGNDYDMSGVQGIGLDSALRFVQAFSEDDIL 240
+EPFECY+MS IE+GLGLKRKHLIAI+LLVGNDYD GV GIG+D ALR V+ FSED +L
Sbjct: 181 REPFECYHMSHIESGLGLKRKHLIAISLLVGNDYDSGGVLGIGVDKALRIVREFSEDQVL 240
Query: 241 NRLHEIGKGNASEIPISLKSEDNMDMDGNSPNTKQSHCSFCGHPGNKRDHMKLSCEFCLT 300
RL +IG G +P +KS D+ + + + HCS CGH G+KR H K SCE C
Sbjct: 241 ERLQDIGNGLQPAVPGGIKSGDDGEEFRSEMKKRSPHCSRCGHLGSKRTHFKSSCEHCGC 300
Query: 301 NDSEGCLKKPEGFKCDCLSCGMNRKHQGQKRLENWYTKICHKIAKEPNFPKDEIIDMFLC 360
+ GC+KKP GF+C+C C +R + QK+ +W+ K+C KIA P FP +II+++L
Sbjct: 301 D--SGCIKKPLGFRCECSFCSKDRDLREQKKTNDWWIKVCDKIALAPEFPNRKIIELYLS 358
Query: 361 NNNGYFSANDRPQISWERPNIEMLIVFLNFHQNWEPSYIRRMIFPMMSTIFLRDMA-TTT 419
+ D +SW P+ ML+ + F +W+PSY+R+M+ PM+STI+LR+ A T
Sbjct: 359 DG---LMTGDGSSMSWGTPDTGMLVDLMVFKLHWDPSYVRKMLLPMLSTIYLREKARNNT 415
Query: 420 VESLLFGQYEFDSLERVKMRYGYQFYVVKWKRAGGSIA-SKIPSNESSTQEDVRESDETV 478
+LL QYEF S++ +K RYG+Q +V++W++ + S S + + E +E+V
Sbjct: 416 GYALLCDQYEFHSIKCIKTRYGHQSFVIRWRKPKSTSGYSHSHSEPEESIVVLEEEEESV 475
Query: 479 DLLDDGDLPEIRDDGGCSFLLTDENMDLVGAAFPAEVKRFQQEQELKDMKKRKNSTSKVQ 538
D LD + P++++D G FLLTDE + LV +AFP E + F E++L++ KK+ S
Sbjct: 476 DPLDGLNEPQVQNDNGDCFLLTDECIGLVQSAFPDETEHFLHEKKLRESKKKNVS----- 530
Query: 539 EKERSASPNSRS--IQLNITGFYPSTKIKHQPKRGEESSKDVDSQGSGGSKTKRE---TS 593
+E +A+P + + +Q +IT FY S K K S + ++ KR+ TS
Sbjct: 531 -EEETATPRATTMGVQRSITDFYRSAK-----KAAAGQSIETGGSSKASAEKKRQATSTS 584
Query: 594 SANLSKSVRRRLLF 607
S+NL+KSVRRRLLF
Sbjct: 585 SSNLTKSVRRRLLF 598
>AT1G01880.2 | Symbols: | 5'-3' exonuclease family protein |
chr1:306558-308991 REVERSE LENGTH=598
Length = 598
Score = 632 bits (1629), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/614 (53%), Positives = 431/614 (70%), Gaps = 24/614 (3%)
Query: 1 MGVGGNFWDLLKPYARNEGFEFLRNKRVAVDLSFWIVQHRNAIKGNVRKPHLRVTFFRTI 60
MGVGGNFWDLL+PYA+ +GF+FLRNKRVAVDLSFWIVQH A+KG V KPHLR+TFFRTI
Sbjct: 1 MGVGGNFWDLLRPYAQQQGFDFLRNKRVAVDLSFWIVQHETAVKGFVLKPHLRLTFFRTI 60
Query: 61 NLFSKFGALPVFVVDGTPSPLKSQARITRFFRSSGIELASLPVPEEGVSAERNRSFSKYV 120
NLFSKFGA PVFVVDGTPSPLKSQARI+RFFRSSGI+ +LPV ++GVS ERN+ FS++V
Sbjct: 61 NLFSKFGAYPVFVVDGTPSPLKSQARISRFFRSSGIDTCNLPVIKDGVSVERNKLFSEWV 120
Query: 121 QECVELVELLGMPVLKAKGEAEALCAQLNSEGHVDACITADSDAFLFGAKCVIKCFSPNS 180
+EC EL+ELLG+PVLKA GEAEALCAQLNS+G VDACIT DSDAFLFGA CVIK PNS
Sbjct: 121 REC-ELLELLGIPVLKANGEAEALCAQLNSQGFVDACITPDSDAFLFGAMCVIKDIKPNS 179
Query: 181 KEPFECYYMSDIEAGLGLKRKHLIAITLLVGNDYDMSGVQGIGLDSALRFVQAFSEDDIL 240
+EPFECY+MS IE+GLGLKRKHLIAI+LLVGNDYD GV GIG+D ALR V+ FSED +L
Sbjct: 180 REPFECYHMSHIESGLGLKRKHLIAISLLVGNDYDSGGVLGIGVDKALRIVREFSEDQVL 239
Query: 241 NRLHEIGKGNASEIPISLKSEDNMDMDGNSPNTKQSHCSFCGHPGNKRDHMKLSCEFCLT 300
RL +IG G +P +KS D+ + + + HCS CGH G+KR H K SCE C
Sbjct: 240 ERLQDIGNGLQPAVPGGIKSGDDGEEFRSEMKKRSPHCSRCGHLGSKRTHFKSSCEHCGC 299
Query: 301 NDSEGCLKKPEGFKCDCLSCGMNRKHQGQKRLENWYTKICHKIAKEPNFPKDEIIDMFLC 360
+ GC+KKP GF+C+C C +R + QK+ +W+ K+C KIA P FP +II+++L
Sbjct: 300 D--SGCIKKPLGFRCECSFCSKDRDLREQKKTNDWWIKVCDKIALAPEFPNRKIIELYLS 357
Query: 361 NNNGYFSANDRPQISWERPNIEMLIVFLNFHQNWEPSYIRRMIFPMMSTIFLRDMA-TTT 419
+ D +SW P+ ML+ + F +W+PSY+R+M+ PM+STI+LR+ A T
Sbjct: 358 DG---LMTGDGSSMSWGTPDTGMLVDLMVFKLHWDPSYVRKMLLPMLSTIYLREKARNNT 414
Query: 420 VESLLFGQYEFDSLERVKMRYGYQFYVVKWKRAGGSIA-SKIPSNESSTQEDVRESDETV 478
+LL QYEF S++ +K RYG+Q +V++W++ + S S + + E +E+V
Sbjct: 415 GYALLCDQYEFHSIKCIKTRYGHQSFVIRWRKPKSTSGYSHSHSEPEESIVVLEEEEESV 474
Query: 479 DLLDDGDLPEIRDDGGCSFLLTDENMDLVGAAFPAEVKRFQQEQELKDMKKRKNSTSKVQ 538
D LD + P++++D G FLLTDE + LV +AFP E + F E++L++ KK+ S
Sbjct: 475 DPLDGLNEPQVQNDNGDCFLLTDECIGLVQSAFPDETEHFLHEKKLRESKKKNVS----- 529
Query: 539 EKERSASPNSRS--IQLNITGFYPSTKIKHQPKRGEESSKDVDSQGSGGSKTKRE---TS 593
+E +A+P + + +Q +IT FY S K K S + ++ KR+ TS
Sbjct: 530 -EEETATPRATTMGVQRSITDFYRSAK-----KAAAGQSIETGGSSKASAEKKRQATSTS 583
Query: 594 SANLSKSVRRRLLF 607
S+NL+KSVRRRLLF
Sbjct: 584 SSNLTKSVRRRLLF 597
>AT3G48900.2 | Symbols: | single-stranded DNA endonuclease family
protein | chr3:18131854-18136239 FORWARD LENGTH=600
Length = 600
Score = 122 bits (306), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 124/253 (49%), Gaps = 11/253 (4%)
Query: 1 MGVGGNFWDLLKPYARNEGFEFLRNKRVAVDLSFWIVQHRNAIK---GNVRKPHLRVTFF 57
MGV WD+L+P + + L+NKRV VDLS W+V+ K K +LR FF
Sbjct: 1 MGVK-YLWDVLEPCKKTFPLDHLQNKRVCVDLSCWMVELHKVNKSYCATKEKVYLR-GFF 58
Query: 58 RTINLFSKFGALPVFVVDGTPSPLKSQARITRFFRSSGIELASLPV-PEEGVSAERN--R 114
+ + V DG +K R + E+A V P + S +RN
Sbjct: 59 HRLRALIALNCSIILVSDGAIPGIKVPTYKRRL--KARFEIADDGVEPSKETSLKRNMGS 116
Query: 115 SFSKYVQECVELVELLGMPVLKAKGEAEALCAQLNSEGHVDACITADSDAFLFGAKCVIK 174
FS ++E + LG+ L EAEA CA LNSE DAC + DSD FLFGAK V +
Sbjct: 117 EFSCIIKEAKVIASTLGILCLDGIEEAEAQCALLNSESLCDACFSFDSDIFLFGAKTVYR 176
Query: 175 CFSPNSKEPFECYYMSDIEAGLGLKRKHLIAITLLVGNDYDMSGVQGIGLDSALRFVQAF 234
CY M DI+ LGL R LIA+ LL+G+DY GV+G+ + A V++
Sbjct: 177 EICLGEGGYVVCYEMDDIKKKLGLGRNSLIALALLLGSDYS-QGVRGLRQEKACELVRSI 235
Query: 235 SEDDILNRLHEIG 247
++ IL ++ G
Sbjct: 236 GDNVILEKVASEG 248
>AT3G28030.1 | Symbols: UVH3, UVR1 | 5'-3' exonuclease family protein
| chr3:10424321-10431178 FORWARD LENGTH=1479
Length = 1479
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 87/163 (53%), Gaps = 2/163 (1%)
Query: 83 SQARITRFFRSSGIELASLPVPEEGVSAERNRSFSKYVQECVELVELLGMPVLKAKGEAE 142
S+A I R E SL + + S+ EC EL+++ G+P + A EAE
Sbjct: 889 SEANIEEEIRVLDQEFVSLGDEQRKLERNAESVSSEMFAECQELLQIFGIPYIIAPMEAE 948
Query: 143 ALCAQLNSEGHVDACITADSDAFLFGAKCVIKCFSPNSKEPFECYYMSDIEAGLGLKRKH 202
A CA + VD +T DSD FLFGA+ V K + K E Y+M DIE LGL R
Sbjct: 949 AQCAFMEQSNLVDGIVTDDSDVFLFGARSVYKNIFDDRK-YVETYFMKDIEKELGLSRDK 1007
Query: 203 LIAITLLVGNDYDMSGVQGIGLDSALRFVQAFSEDDILNRLHE 245
+I + +L+G+DY G+ GIG+ +A+ V AF E+D L + E
Sbjct: 1008 IIRMAMLLGSDY-TEGISGIGIVNAIEVVTAFPEEDGLQKFRE 1049
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 1 MGVGGNFWDLLKPYARNEGFEFLRNKRVAVDLSFWIVQHRNAI---KGN-VRKPHLRVTF 56
MGV G W+LL P R E L NKR+A+D S W+VQ A+ KG+ V+ HL + F
Sbjct: 1 MGVQG-LWELLAPVGRRVSVETLANKRLAIDASIWMVQFIKAMRDEKGDMVQNAHL-IGF 58
Query: 57 FRTINLFSKFGALPVFVVDGTPSPLKSQARITR 89
FR I P+FV DG LK + I R
Sbjct: 59 FRRICKLLFLRTKPIFVFDGATPALKRRTVIAR 91
>AT3G48900.1 | Symbols: | single-stranded DNA endonuclease family
protein | chr3:18132449-18136239 FORWARD LENGTH=536
Length = 536
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 79/146 (54%), Gaps = 3/146 (2%)
Query: 104 PEEGVSAERN--RSFSKYVQECVELVELLGMPVLKAKGEAEALCAQLNSEGHVDACITAD 161
P + S +RN FS ++E + LG+ L EAEA CA LNSE DAC + D
Sbjct: 40 PSKETSLKRNMGSEFSCIIKEAKVIASTLGILCLDGIEEAEAQCALLNSESLCDACFSFD 99
Query: 162 SDAFLFGAKCVIKCFSPNSKEPFECYYMSDIEAGLGLKRKHLIAITLLVGNDYDMSGVQG 221
SD FLFGAK V + CY M DI+ LGL R LIA+ LL+G+DY GV+G
Sbjct: 100 SDIFLFGAKTVYREICLGEGGYVVCYEMDDIKKKLGLGRNSLIALALLLGSDYS-QGVRG 158
Query: 222 IGLDSALRFVQAFSEDDILNRLHEIG 247
+ + A V++ ++ IL ++ G
Sbjct: 159 LRQEKACELVRSIGDNVILEKVASEG 184
>AT5G26680.2 | Symbols: | 5'-3' exonuclease family protein |
chr5:9311882-9315458 REVERSE LENGTH=383
Length = 383
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/271 (31%), Positives = 125/271 (46%), Gaps = 31/271 (11%)
Query: 1 MGVGGNFWDLLKPYA----RNEGFEFLRNKRVAVDLS-----FWIVQHRNAIK------G 45
MG+ G LL A + + FE +++AVD S F IV R + G
Sbjct: 1 MGIKG-LTKLLADNAPSCMKEQKFESYFGRKIAVDASMSIYQFLIVVGRTGTEMLTNEAG 59
Query: 46 NVRKPHLRVTFFRTINLFSKFGALPVFVVDGTPSPLKSQARITRFFRSSGIELASLPVPE 105
V HL+ F RTI L G PV+V DG P LK Q R+ + + A L
Sbjct: 60 EVTS-HLQGMFNRTIRLLEA-GIKPVYVFDGKPPELKRQELAKRYSKRADA-TADLTGAI 116
Query: 106 EGVSAERNRSFSK--------YVQECVELVELLGMPVLKAKGEAEALCAQLNSEGHVDAC 157
E + E +SK + +C L+ L+G+PV++A EAEA CA L G V
Sbjct: 117 EAGNKEDIEKYSKRTVKVTKQHNDDCKRLLRLMGVPVVEATSEAEAQCAALCKSGKVYGV 176
Query: 158 ITADSDAFLFGA-KCVIKCFSPNSKE-PFECYYMSDIEAGLGLKRKHLIAITLLVGNDYD 215
+ D D+ FGA K + P+S++ P + ++ I L L I + +L G DY
Sbjct: 177 ASEDMDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAKILEELQLTMDQFIDLCILSGCDY- 235
Query: 216 MSGVQGIGLDSALRFV-QAFSEDDILNRLHE 245
++GIG +AL+ + Q S + IL L++
Sbjct: 236 CDSIRGIGGQTALKLIRQHGSIETILENLNK 266
>AT5G26680.1 | Symbols: | 5'-3' exonuclease family protein |
chr5:9311882-9315458 REVERSE LENGTH=453
Length = 453
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 118/252 (46%), Gaps = 26/252 (10%)
Query: 16 RNEGFEFLRNKRVAVDLS-----FWIVQHRNAIK------GNVRKPHLRVTFFRTINLFS 64
+ + FE +++AVD S F IV R + G V HL+ F RTI L
Sbjct: 19 KEQKFESYFGRKIAVDASMSIYQFLIVVGRTGTEMLTNEAGEVTS-HLQGMFNRTIRLLE 77
Query: 65 KFGALPVFVVDGTPSPLKSQARITRFFRSSGIELASLPVPEEGVSAERNRSFSK------ 118
G PV+V DG P LK Q R+ + + A L E + E +SK
Sbjct: 78 A-GIKPVYVFDGKPPELKRQELAKRYSKRAD-ATADLTGAIEAGNKEDIEKYSKRTVKVT 135
Query: 119 --YVQECVELVELLGMPVLKAKGEAEALCAQLNSEGHVDACITADSDAFLFGA-KCVIKC 175
+ +C L+ L+G+PV++A EAEA CA L G V + D D+ FGA K +
Sbjct: 136 KQHNDDCKRLLRLMGVPVVEATSEAEAQCAALCKSGKVYGVASEDMDSLTFGAPKFLRHL 195
Query: 176 FSPNSKE-PFECYYMSDIEAGLGLKRKHLIAITLLVGNDYDMSGVQGIGLDSALRFV-QA 233
P+S++ P + ++ I L L I + +L G DY ++GIG +AL+ + Q
Sbjct: 196 MDPSSRKIPVMEFEVAKILEELQLTMDQFIDLCILSGCDY-CDSIRGIGGQTALKLIRQH 254
Query: 234 FSEDDILNRLHE 245
S + IL L++
Sbjct: 255 GSIETILENLNK 266
>AT1G29630.2 | Symbols: | 5'-3' exonuclease family protein |
chr1:10349587-10353538 FORWARD LENGTH=735
Length = 735
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 110/263 (41%), Gaps = 27/263 (10%)
Query: 1 MGVGGNFWDLLKPYARNEGFEFLRNKRVAVDLSFWIVQHRNAI-------KGNVRKPHLR 53
MG+ G LLK + L VAVD W+ H+ A+ KG K H++
Sbjct: 1 MGIQG-LLPLLKSIMVPIHIKELEGCIVAVDTYSWL--HKGALSCSRELCKGLPTKRHIQ 57
Query: 54 VTFFRTINLFSKFGALPVFVVDGTPSPLKSQARITRFFRSSGIELA-SLPVPEEGVSAER 112
R +NL G P+ V DG P P+K + R RS LA +L G S+
Sbjct: 58 YCMHR-VNLLRHHGVKPIMVFDGGPLPMKLEQENKRA-RSRKENLARALEHEANGNSSAA 115
Query: 113 NRSFSKYV-------QECVELVELLGMPVLKAKGEAEALCAQLNSEGHVDACITADSDAF 165
+SK V E ++++ + + A EA+A A L VDA IT DSD
Sbjct: 116 YECYSKAVDISPSIAHELIQVLRQENVDYVVAPYEADAQMAFLAITKQVDAIITEDSDLI 175
Query: 166 LFGA-KCVIKCFSPNSKEPFECYYM---SDIEAGLGLKRKHLIAITLLVGNDYDMSGVQG 221
FG + + K F+ + D+ G + L+ + +L G DY + + G
Sbjct: 176 PFGCLRIIFKMDKFGHGVEFQASKLPKNKDLSLS-GFSSQMLLEMCILSGCDY-LQSLPG 233
Query: 222 IGLDSALRFVQAF-SEDDILNRL 243
+GL A + F S D ++ L
Sbjct: 234 MGLKRAHALITKFKSYDRVIKHL 256
>AT1G29630.1 | Symbols: | 5'-3' exonuclease family protein |
chr1:10349587-10353538 FORWARD LENGTH=665
Length = 665
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 104/265 (39%), Gaps = 38/265 (14%)
Query: 1 MGVGGNFWDLLKPYARNEGFEFLRNKRVAVDLSFWIVQHRNAI-------KGNVRKPHLR 53
MG+ G LLK + L VAVD W+ H+ A+ KG K H++
Sbjct: 1 MGIQG-LLPLLKSIMVPIHIKELEGCIVAVDTYSWL--HKGALSCSRELCKGLPTKRHIQ 57
Query: 54 VTFFRTINLFSKFGALPVFVVDGTPSPLKSQARITRFFRSSGIELA-SLPVPEEGVSAER 112
R +NL G P+ V DG P P+K + R RS LA +L G S+
Sbjct: 58 YCMHR-VNLLRHHGVKPIMVFDGGPLPMKLEQENKRA-RSRKENLARALEHEANGNSSAA 115
Query: 113 NRSFSKYV-------QECVELVELLGMPVLKAKGEAEALCAQLNSEGHVDACITADSDAF 165
+SK V E ++++ + + A EA+A A L VDA IT DSD
Sbjct: 116 YECYSKAVDISPSIAHELIQVLRQENVDYVVAPYEADAQMAFLAITKQVDAIITEDSDLI 175
Query: 166 LFGAKCVIKCFSPNSKEPFECYYMSDIEAGLGLKRK-----------HLIAITLLVGNDY 214
FG VIK ++ Y S A L K + HL I+ +G D
Sbjct: 176 PFGCLRVIKHLKYSTVSVPPLYEESFKRALLTFKHQRVYDPNAEDIIHLCDISDNLGEDS 235
Query: 215 DMSG-------VQGIGLDSALRFVQ 232
D G +GI L F Q
Sbjct: 236 DFVGPSMPQDIAKGIALGQLDPFTQ 260
>AT1G18090.2 | Symbols: | 5'-3' exonuclease family protein |
chr1:6224539-6227715 FORWARD LENGTH=577
Length = 577
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 117/276 (42%), Gaps = 33/276 (11%)
Query: 1 MGVGGNFWDLLKPYARNEGFEFLRNKRVAVDLSFWIVQHRNAIKGNVR-------KPHLR 53
MG+ + +KPY + KRV +D W+ H+ A ++ K LR
Sbjct: 1 MGIK-DLLRFMKPYILPIHIQKYAGKRVGIDAYSWL--HKGAYSCSMELCLDTDGKKKLR 57
Query: 54 VT--FFRTINLFSKFGALPVFVVDGTPSPLKSQARITRFF-RSSGIELASLPVPEEGVSA 110
F +NL + +PV V+DG P K+ R R + + A + + E V+A
Sbjct: 58 YIDYFMHRVNLLQHYEIIPVVVLDGGNMPCKAATGDERHRQRKANFDAAMVKLKEGNVAA 117
Query: 111 ER---NRSFSKYVQECVELVELL---GMPVLKAKGEAEALCAQLNS----EGHVDACITA 160
R+ S +L+++L + + A EA+A A L+S +G + A IT
Sbjct: 118 ATELFQRAVSVTSSMAHQLIQVLKSENVEFIVAPYEADAQLAYLSSLELEQGGIAAVITE 177
Query: 161 DSDAFLFGAKCVIKCFSPNSKEPFECYYMSDIEAGLGLK-------RKHLIAITLLVGND 213
DSD +G K VI F + E + ++ + K ++ A+ +L G D
Sbjct: 178 DSDLLAYGCKAVI--FKMDRYGKGEELVLDNVFQAVDQKPSFQNFDQELFTAMCVLAGCD 235
Query: 214 YDMSGVQGIGLDSALRFVQAFSEDDILNRLHEIGKG 249
+ + V G+G+ A F+ + +++ + KG
Sbjct: 236 F-LPSVPGVGISRAHAFISKYQSVELVLSFLKTKKG 270
>AT1G18090.1 | Symbols: | 5'-3' exonuclease family protein |
chr1:6224539-6227715 FORWARD LENGTH=577
Length = 577
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 117/276 (42%), Gaps = 33/276 (11%)
Query: 1 MGVGGNFWDLLKPYARNEGFEFLRNKRVAVDLSFWIVQHRNAIKGNVR-------KPHLR 53
MG+ + +KPY + KRV +D W+ H+ A ++ K LR
Sbjct: 1 MGIK-DLLRFMKPYILPIHIQKYAGKRVGIDAYSWL--HKGAYSCSMELCLDTDGKKKLR 57
Query: 54 VT--FFRTINLFSKFGALPVFVVDGTPSPLKSQARITRFF-RSSGIELASLPVPEEGVSA 110
F +NL + +PV V+DG P K+ R R + + A + + E V+A
Sbjct: 58 YIDYFMHRVNLLQHYEIIPVVVLDGGNMPCKAATGDERHRKRKANFDAAMVKLKEGNVAA 117
Query: 111 ER---NRSFSKYVQECVELVELL---GMPVLKAKGEAEALCAQLNS----EGHVDACITA 160
R+ S +L+++L + + A EA+A A L+S +G + A IT
Sbjct: 118 ATELFQRAVSVTSSMAHQLIQVLKSENVEFIVAPYEADAQLAYLSSLELEQGGIAAVITE 177
Query: 161 DSDAFLFGAKCVIKCFSPNSKEPFECYYMSDIEAGLGLK-------RKHLIAITLLVGND 213
DSD +G K VI F + E + ++ + K ++ A+ +L G D
Sbjct: 178 DSDLLAYGCKAVI--FKMDRYGKGEELVLDNVFQAVDQKPSFQNFDQELFTAMCVLAGCD 235
Query: 214 YDMSGVQGIGLDSALRFVQAFSEDDILNRLHEIGKG 249
+ + V G+G+ A F+ + +++ + KG
Sbjct: 236 F-LPSVPGVGISRAHAFISKYQSVELVLSFLKTKKG 270