Miyakogusa Predicted Gene

Lj1g3v2624830.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2624830.1 Non Chatacterized Hit- tr|I1L6Q0|I1L6Q0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.38012
PE,81.03,0,RrnaAD,Ribosomal RNA adenine methylase transferase;
Ribosomal RNA adenine dimethylases,Ribosomal RNA,CUFF.29306.1
         (348 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G01860.1 | Symbols: PFC1 | Ribosomal RNA adenine dimethylase ...   421   e-118
AT5G66360.2 | Symbols:  | Ribosomal RNA adenine dimethylase fami...    99   3e-21
AT2G47420.1 | Symbols:  | Ribosomal RNA adenine dimethylase fami...    97   2e-20
AT5G66360.1 | Symbols:  | Ribosomal RNA adenine dimethylase fami...    84   1e-16

>AT1G01860.1 | Symbols: PFC1 | Ribosomal RNA adenine dimethylase
           family protein | chr1:304439-306275 REVERSE LENGTH=343
          Length = 343

 Score =  421 bits (1083), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/315 (65%), Positives = 250/315 (79%), Gaps = 7/315 (2%)

Query: 34  STAGARRRRLHVVCAGGGGRPSTRSADDYNATLRALNSKGRFPRKSLGQHYMLNSEINEQ 93
           S A +RRR + V C          S DDY++TL++LNS+GRFPRKSLGQHYMLNS+IN+Q
Sbjct: 36  SAALSRRRTVKVSCGKS-------SPDDYHSTLKSLNSRGRFPRKSLGQHYMLNSDINDQ 88

Query: 94  LAGVAGIQQGDVVLEIGPGTGSLTNILLDSGAFVLAVEKDKHMAALVCERFSSTGKLKVL 153
           LA  A +++GD VLEIGPGTGSLTN+L++ GA VLA+EKD HM  LV ERF+ + K KVL
Sbjct: 89  LASAADVKEGDFVLEIGPGTGSLTNVLINLGATVLAIEKDPHMVDLVSERFAGSDKFKVL 148

Query: 154 TEDIVKCHVRSHMSSLVGSTKQTDPETRNAKVVANIPFNISTDVVKLLLPMGDIFSEVVL 213
            ED VKCH+RSHM S++ + + + P++  AKVV+N+PFNISTDVVKLLLPMGDIFS+VVL
Sbjct: 149 QEDFVKCHIRSHMLSILETRRLSHPDSALAKVVSNLPFNISTDVVKLLLPMGDIFSKVVL 208

Query: 214 LLQEETAVRLVVSSLRTSEYRPINIFVNYYSDPEYKFKVPRANFFPQPNVDAAVVSFKLK 273
           LLQ+E A+RLV  +LRTSEYRPINI +N+YS+PEY F+VPR NFFPQP VDAAVV+FKLK
Sbjct: 209 LLQDEAALRLVEPALRTSEYRPINILINFYSEPEYNFRVPRENFFPQPKVDAAVVTFKLK 268

Query: 274 LPSEYPQVXXXXXXXXMVNSGFNEKRKMLRKSLQHICTSLEIEEALKSLGLQPTSRPEEL 333
            P +YP V        +VNS FN KRKMLRKSLQHI +S +IE+AL   GL  TSRPEEL
Sbjct: 269 HPRDYPDVSSTKNFFSLVNSAFNGKRKMLRKSLQHISSSPDIEKALGVAGLPATSRPEEL 328

Query: 334 TLDDFVKLHNLISKE 348
           TLDDFVKLHN+I++E
Sbjct: 329 TLDDFVKLHNVIARE 343


>AT5G66360.2 | Symbols:  | Ribosomal RNA adenine dimethylase family
           protein | chr5:26510329-26511711 FORWARD LENGTH=380
          Length = 380

 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/199 (34%), Positives = 106/199 (53%), Gaps = 21/199 (10%)

Query: 73  GRFPRKSLGQHYMLNSEINEQLAGVAGIQQGDVVLEIGPGTGSLTNILLDSGAFVLAVEK 132
           G F  KS GQH + N+ I + +   + I+  D VLEIGPGTG+LT  LL++   V+AVE 
Sbjct: 60  GLFLCKSKGQHLLTNTRILDSIVRSSDIRPTDTVLEIGPGTGNLTMKLLEAAQNVVAVEL 119

Query: 133 DKHMAALVCERFSSTG---KLKVLTEDIVKCHVRSHMSSLVGSTKQTDPETRNAKVVANI 189
           DK M  ++ +R S  G   KL ++ +D++K     H                   VVANI
Sbjct: 120 DKRMVEILRKRVSDHGFADKLTIIQKDVLKTDF-PHFDL----------------VVANI 162

Query: 190 PFNISTDVVKLLLPMGDIFSEVVLLLQEETAVRLVVSSLRTSEYRPINIFVNYYSDPEYK 249
           P+NIS+ +V  L+   + F    LLLQ+E + RL+ +    S++  + + V   +D ++ 
Sbjct: 163 PYNISSPLVAKLVYGSNTFRSATLLLQKEFSRRLLANP-GDSDFNRLAVNVKLVADVKFV 221

Query: 250 FKVPRANFFPQPNVDAAVV 268
             V +  F P P VD++V+
Sbjct: 222 MDVSKREFVPPPKVDSSVI 240


>AT2G47420.1 | Symbols:  | Ribosomal RNA adenine dimethylase family
           protein | chr2:19457574-19458777 FORWARD LENGTH=353
          Length = 353

 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/207 (34%), Positives = 105/207 (50%), Gaps = 23/207 (11%)

Query: 78  KSLGQHYMLNSEINEQLAGVAGIQQGDVVLEIGPGTGSLTNILLDSGAFVLAVEKDKHMA 137
           KS GQH + N  + + +   AGI+  DV+LEIGPGTG+LT  LL++G  V+AVE D  M 
Sbjct: 30  KSKGQHILKNPLLVDSIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKEVIAVELDSRMV 89

Query: 138 ALVCERFSST---GKLKVLTEDIVKCHVRSHMSSLVGSTKQTDPETRNAKVVANIPFNIS 194
             +  RF  T    +LKV+  D++K  +                  R    VANIP+ IS
Sbjct: 90  LELQRRFQGTPFSNRLKVIQGDVLKTEL-----------------PRFDICVANIPYQIS 132

Query: 195 TDVVKLLLPMGDIFSEVVLLLQEETAVRLVVSSLRTSEYRPINIFVNYYSDPEYKFKVPR 254
           + +   LL     F   V++ Q E A+RLV      + Y  +++    Y+   +  KV +
Sbjct: 133 SPLTFKLLFHPTSFRCAVIMYQREFAMRLVAQP-GDNLYCRLSVNTQLYARVSHLLKVGK 191

Query: 255 ANFFPQPNVDAAVVSFKLKLPSEYPQV 281
            NF P P VD++VV  + + P   PQV
Sbjct: 192 NNFRPPPKVDSSVVRIEPRRPG--PQV 216


>AT5G66360.1 | Symbols:  | Ribosomal RNA adenine dimethylase family
           protein | chr5:26510329-26511711 FORWARD LENGTH=352
          Length = 352

 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 85/157 (54%), Gaps = 20/157 (12%)

Query: 73  GRFPRKSLGQHYMLNSEINEQLAGVAGIQQGDVVLEIGPGTGSLTNILLDSGAFVLAVEK 132
           G F  KS GQH + N+ I + +   + I+  D VLEIGPGTG+LT  LL++   V+AVE 
Sbjct: 60  GLFLCKSKGQHLLTNTRILDSIVRSSDIRPTDTVLEIGPGTGNLTMKLLEAAQNVVAVEL 119

Query: 133 DKHMAALVCERFSSTG---KLKVLTEDIVKCHVRSHMSSLVGSTKQTDPETRNAKVVANI 189
           DK M  ++ +R S  G   KL ++ +D++K     H                   VVANI
Sbjct: 120 DKRMVEILRKRVSDHGFADKLTIIQKDVLKTDF-PHFDL----------------VVANI 162

Query: 190 PFNISTDVVKLLLPMGDIFSEVVLLLQEETAVRLVVS 226
           P+NIS+ +V  L+   + F    LLLQ+E + RL+ +
Sbjct: 163 PYNISSPLVAKLVYGSNTFRSATLLLQKEFSRRLLAN 199