Miyakogusa Predicted Gene
- Lj1g3v2612700.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v2612700.1 Non Chatacterized Hit- tr|Q8VWW4|Q8VWW4_ORYSA
Putative uncharacterized protein (Fragment) OS=Oryza
s,65.67,1e-17,seg,NULL; F-box domain,F-box domain, cyclin-like; no
description,NULL,CUFF.29303.1
(366 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G00755.2 | Symbols: | F-box family protein | chr4:325294-326... 315 3e-86
AT4G00755.1 | Symbols: | F-box family protein | chr4:325294-326... 315 3e-86
>AT4G00755.2 | Symbols: | F-box family protein | chr4:325294-326787
FORWARD LENGTH=377
Length = 377
Score = 315 bits (807), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 177/356 (49%), Positives = 228/356 (64%), Gaps = 19/356 (5%)
Query: 9 DFLSFLDSDMSLKILMCLDDPVDLVRVSCVSRSWRHYVIVNSLCKQLCLRIFPQLSRVTR 68
DF++ LD+D SL IL CLDDP D+VR S VSRSWR +V+ SL K LCL++F QLS V
Sbjct: 2 DFVNNLDTDTSLSILSCLDDPSDIVRASAVSRSWRQFVVKYSLSKNLCLKLFHQLSNVDH 61
Query: 69 VVETNQHGLEETPEVGSSSSMEWLALQRDHRVYAYLARSFKSSVSMNCIAKTIVASSTDN 128
++ET+ E+ E GSSS M+ L+++HR +A LAR SS +CIA I ASSTDN
Sbjct: 62 IIETSNDRNGESSEAGSSSLMDTRLLEKEHRAFALLARGCMSSPIESCIADAIRASSTDN 121
Query: 129 FPQESIDNTLEPSDHIAGRYSYWSSNGHSNPNVPETLTYELASQICVVTEINIQPFQAYF 188
+P ESI NTLE D I SYWSS G VPE+L Y+L +C++TE++I PFQAYF
Sbjct: 122 YPVESILNTLEKRDRIGRTPSYWSSTGQHKTTVPESLLYKLIGDLCLITEVSIHPFQAYF 181
Query: 189 QMGGPIYSAKSVRFKMG-------HINASLD-------ASADEKIVWTYTSPEFPMTQEN 234
Q G PIYS+ VRF++G H N S D +S + VWTYTS EF M QEN
Sbjct: 182 QRGHPIYSSHYVRFRLGHEKDNSPHYNNSQDKKGEPGKSSIESNYVWTYTSQEFSMAQEN 241
Query: 235 ELQNFKLPEPVLCIGGILQVELLGRVQRQEMDGLLYICISHVQAVGSLLSPAFSVDILEP 294
LQ+F+LPEPVLCIGG L VE LGRVQ QEMDG YIC+SHV+ G L+ +F V+ ++
Sbjct: 242 RLQSFQLPEPVLCIGGYLLVEFLGRVQTQEMDGQYYICVSHVKVEGRSLAKSFRVENVDD 301
Query: 295 SGMFVLKCDRNYQPPATSEE---ESGAN-STDYMQRGLRDFQQIVTILRGHVIGVV 346
+G F LK +Y P EE E+G + + Q LR+ +Q++ +L H + VV
Sbjct: 302 NGKFGLKV-LSYNDPKKMEEMDAEAGQDMDAEAGQSQLRNLEQLLNLLHRHPLDVV 356
>AT4G00755.1 | Symbols: | F-box family protein | chr4:325294-326787
FORWARD LENGTH=377
Length = 377
Score = 315 bits (807), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 177/356 (49%), Positives = 228/356 (64%), Gaps = 19/356 (5%)
Query: 9 DFLSFLDSDMSLKILMCLDDPVDLVRVSCVSRSWRHYVIVNSLCKQLCLRIFPQLSRVTR 68
DF++ LD+D SL IL CLDDP D+VR S VSRSWR +V+ SL K LCL++F QLS V
Sbjct: 2 DFVNNLDTDTSLSILSCLDDPSDIVRASAVSRSWRQFVVKYSLSKNLCLKLFHQLSNVDH 61
Query: 69 VVETNQHGLEETPEVGSSSSMEWLALQRDHRVYAYLARSFKSSVSMNCIAKTIVASSTDN 128
++ET+ E+ E GSSS M+ L+++HR +A LAR SS +CIA I ASSTDN
Sbjct: 62 IIETSNDRNGESSEAGSSSLMDTRLLEKEHRAFALLARGCMSSPIESCIADAIRASSTDN 121
Query: 129 FPQESIDNTLEPSDHIAGRYSYWSSNGHSNPNVPETLTYELASQICVVTEINIQPFQAYF 188
+P ESI NTLE D I SYWSS G VPE+L Y+L +C++TE++I PFQAYF
Sbjct: 122 YPVESILNTLEKRDRIGRTPSYWSSTGQHKTTVPESLLYKLIGDLCLITEVSIHPFQAYF 181
Query: 189 QMGGPIYSAKSVRFKMG-------HINASLD-------ASADEKIVWTYTSPEFPMTQEN 234
Q G PIYS+ VRF++G H N S D +S + VWTYTS EF M QEN
Sbjct: 182 QRGHPIYSSHYVRFRLGHEKDNSPHYNNSQDKKGEPGKSSIESNYVWTYTSQEFSMAQEN 241
Query: 235 ELQNFKLPEPVLCIGGILQVELLGRVQRQEMDGLLYICISHVQAVGSLLSPAFSVDILEP 294
LQ+F+LPEPVLCIGG L VE LGRVQ QEMDG YIC+SHV+ G L+ +F V+ ++
Sbjct: 242 RLQSFQLPEPVLCIGGYLLVEFLGRVQTQEMDGQYYICVSHVKVEGRSLAKSFRVENVDD 301
Query: 295 SGMFVLKCDRNYQPPATSEE---ESGAN-STDYMQRGLRDFQQIVTILRGHVIGVV 346
+G F LK +Y P EE E+G + + Q LR+ +Q++ +L H + VV
Sbjct: 302 NGKFGLKV-LSYNDPKKMEEMDAEAGQDMDAEAGQSQLRNLEQLLNLLHRHPLDVV 356