Miyakogusa Predicted Gene

Lj1g3v2612700.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2612700.1 Non Chatacterized Hit- tr|Q8VWW4|Q8VWW4_ORYSA
Putative uncharacterized protein (Fragment) OS=Oryza
s,65.67,1e-17,seg,NULL; F-box domain,F-box domain, cyclin-like; no
description,NULL,CUFF.29303.1
         (366 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G00755.2 | Symbols:  | F-box family protein | chr4:325294-326...   315   3e-86
AT4G00755.1 | Symbols:  | F-box family protein | chr4:325294-326...   315   3e-86

>AT4G00755.2 | Symbols:  | F-box family protein | chr4:325294-326787
           FORWARD LENGTH=377
          Length = 377

 Score =  315 bits (807), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 177/356 (49%), Positives = 228/356 (64%), Gaps = 19/356 (5%)

Query: 9   DFLSFLDSDMSLKILMCLDDPVDLVRVSCVSRSWRHYVIVNSLCKQLCLRIFPQLSRVTR 68
           DF++ LD+D SL IL CLDDP D+VR S VSRSWR +V+  SL K LCL++F QLS V  
Sbjct: 2   DFVNNLDTDTSLSILSCLDDPSDIVRASAVSRSWRQFVVKYSLSKNLCLKLFHQLSNVDH 61

Query: 69  VVETNQHGLEETPEVGSSSSMEWLALQRDHRVYAYLARSFKSSVSMNCIAKTIVASSTDN 128
           ++ET+     E+ E GSSS M+   L+++HR +A LAR   SS   +CIA  I ASSTDN
Sbjct: 62  IIETSNDRNGESSEAGSSSLMDTRLLEKEHRAFALLARGCMSSPIESCIADAIRASSTDN 121

Query: 129 FPQESIDNTLEPSDHIAGRYSYWSSNGHSNPNVPETLTYELASQICVVTEINIQPFQAYF 188
           +P ESI NTLE  D I    SYWSS G     VPE+L Y+L   +C++TE++I PFQAYF
Sbjct: 122 YPVESILNTLEKRDRIGRTPSYWSSTGQHKTTVPESLLYKLIGDLCLITEVSIHPFQAYF 181

Query: 189 QMGGPIYSAKSVRFKMG-------HINASLD-------ASADEKIVWTYTSPEFPMTQEN 234
           Q G PIYS+  VRF++G       H N S D       +S +   VWTYTS EF M QEN
Sbjct: 182 QRGHPIYSSHYVRFRLGHEKDNSPHYNNSQDKKGEPGKSSIESNYVWTYTSQEFSMAQEN 241

Query: 235 ELQNFKLPEPVLCIGGILQVELLGRVQRQEMDGLLYICISHVQAVGSLLSPAFSVDILEP 294
            LQ+F+LPEPVLCIGG L VE LGRVQ QEMDG  YIC+SHV+  G  L+ +F V+ ++ 
Sbjct: 242 RLQSFQLPEPVLCIGGYLLVEFLGRVQTQEMDGQYYICVSHVKVEGRSLAKSFRVENVDD 301

Query: 295 SGMFVLKCDRNYQPPATSEE---ESGAN-STDYMQRGLRDFQQIVTILRGHVIGVV 346
           +G F LK   +Y  P   EE   E+G +   +  Q  LR+ +Q++ +L  H + VV
Sbjct: 302 NGKFGLKV-LSYNDPKKMEEMDAEAGQDMDAEAGQSQLRNLEQLLNLLHRHPLDVV 356


>AT4G00755.1 | Symbols:  | F-box family protein | chr4:325294-326787
           FORWARD LENGTH=377
          Length = 377

 Score =  315 bits (807), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 177/356 (49%), Positives = 228/356 (64%), Gaps = 19/356 (5%)

Query: 9   DFLSFLDSDMSLKILMCLDDPVDLVRVSCVSRSWRHYVIVNSLCKQLCLRIFPQLSRVTR 68
           DF++ LD+D SL IL CLDDP D+VR S VSRSWR +V+  SL K LCL++F QLS V  
Sbjct: 2   DFVNNLDTDTSLSILSCLDDPSDIVRASAVSRSWRQFVVKYSLSKNLCLKLFHQLSNVDH 61

Query: 69  VVETNQHGLEETPEVGSSSSMEWLALQRDHRVYAYLARSFKSSVSMNCIAKTIVASSTDN 128
           ++ET+     E+ E GSSS M+   L+++HR +A LAR   SS   +CIA  I ASSTDN
Sbjct: 62  IIETSNDRNGESSEAGSSSLMDTRLLEKEHRAFALLARGCMSSPIESCIADAIRASSTDN 121

Query: 129 FPQESIDNTLEPSDHIAGRYSYWSSNGHSNPNVPETLTYELASQICVVTEINIQPFQAYF 188
           +P ESI NTLE  D I    SYWSS G     VPE+L Y+L   +C++TE++I PFQAYF
Sbjct: 122 YPVESILNTLEKRDRIGRTPSYWSSTGQHKTTVPESLLYKLIGDLCLITEVSIHPFQAYF 181

Query: 189 QMGGPIYSAKSVRFKMG-------HINASLD-------ASADEKIVWTYTSPEFPMTQEN 234
           Q G PIYS+  VRF++G       H N S D       +S +   VWTYTS EF M QEN
Sbjct: 182 QRGHPIYSSHYVRFRLGHEKDNSPHYNNSQDKKGEPGKSSIESNYVWTYTSQEFSMAQEN 241

Query: 235 ELQNFKLPEPVLCIGGILQVELLGRVQRQEMDGLLYICISHVQAVGSLLSPAFSVDILEP 294
            LQ+F+LPEPVLCIGG L VE LGRVQ QEMDG  YIC+SHV+  G  L+ +F V+ ++ 
Sbjct: 242 RLQSFQLPEPVLCIGGYLLVEFLGRVQTQEMDGQYYICVSHVKVEGRSLAKSFRVENVDD 301

Query: 295 SGMFVLKCDRNYQPPATSEE---ESGAN-STDYMQRGLRDFQQIVTILRGHVIGVV 346
           +G F LK   +Y  P   EE   E+G +   +  Q  LR+ +Q++ +L  H + VV
Sbjct: 302 NGKFGLKV-LSYNDPKKMEEMDAEAGQDMDAEAGQSQLRNLEQLLNLLHRHPLDVV 356