Miyakogusa Predicted Gene

Lj1g3v2610290.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2610290.1 Non Chatacterized Hit- tr|F6GT26|F6GT26_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,73.25,0,DEAD-like helicases superfamily,Helicase, superfamily 1/2,
ATP-binding domain; DEAH_ATP_HELICASE,DNA,CUFF.29258.1
         (638 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G32490.1 | Symbols: EMB2733, ESP3 | RNA helicase family prote...   741   0.0  
AT1G32490.2 | Symbols: ESP3 | RNA helicase family protein | chr1...   714   0.0  
AT2G35340.1 | Symbols: MEE29 | helicase domain-containing protei...   703   0.0  
AT4G16680.1 | Symbols:  | P-loop containing nucleoside triphosph...   481   e-136
AT3G26560.1 | Symbols:  | ATP-dependent RNA helicase, putative |...   369   e-102
AT5G13010.1 | Symbols: EMB3011 | RNA helicase family protein | c...   333   2e-91
AT2G47250.1 | Symbols:  | RNA helicase family protein | chr2:193...   319   4e-87
AT3G62310.1 | Symbols:  | RNA helicase family protein | chr3:230...   318   7e-87
AT1G27900.1 | Symbols:  | RNA helicase family protein | chr1:971...   288   7e-78
AT4G18465.1 | Symbols:  | RNA helicase family protein | chr4:101...   286   2e-77
AT1G26370.1 | Symbols:  | RNA helicase family protein | chr1:912...   276   2e-74
AT1G33390.1 | Symbols: ATFAS4, FAS4 | RNA helicase family protei...   174   2e-43
AT5G10370.1 | Symbols:  | helicase domain-containing protein / I...   173   4e-43
AT4G01020.1 | Symbols:  | helicase domain-containing protein / I...   164   2e-40
AT2G01130.1 | Symbols:  | DEA(D/H)-box RNA helicase family prote...   151   1e-36
AT2G35920.1 | Symbols:  | RNA helicase family protein | chr2:150...   147   2e-35
AT1G48650.2 | Symbols:  | DEA(D/H)-box RNA helicase family prote...   145   6e-35
AT1G48650.1 | Symbols:  | DEA(D/H)-box RNA helicase family prote...   145   7e-35
AT1G58050.1 | Symbols:  | RNA helicase family protein | chr1:214...   144   1e-34
AT2G30800.1 | Symbols: HVT1, ATVT-1 | helicase in vascular tissu...   142   6e-34
AT5G04895.1 | Symbols:  | DEA(D/H)-box RNA helicase family prote...   141   1e-33
AT1G06670.1 | Symbols: NIH | nuclear DEIH-boxhelicase | chr1:204...   140   3e-33
AT1G58060.1 | Symbols:  | RNA helicase family protein | chr1:214...   117   2e-26
AT2G47680.1 | Symbols:  | zinc finger (CCCH type) helicase famil...    95   1e-19

>AT1G32490.1 | Symbols: EMB2733, ESP3 | RNA helicase family protein
           | chr1:11742356-11749286 REVERSE LENGTH=1044
          Length = 1044

 Score =  741 bits (1913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/646 (61%), Positives = 459/646 (71%), Gaps = 14/646 (2%)

Query: 4   LVNYNLSSS-ETGAFAEEIFSRVPRSSSGSNQYWKQEREAAMLARRQKSYTILKXXXXXX 62
           LV+Y  SSS +T +FAEEIF+RVPR ++G N Y K E EAAML R+QK+Y +L       
Sbjct: 46  LVDYGFSSSGDTRSFAEEIFARVPRKTAGVNLYQKHEAEAAMLVRKQKTYALLDADDDED 105

Query: 63  XXXXXXXXXQDNPSKLYSGKKRFRKKTEVQD--DDEV-IXXXXXXXXXXXXXXXXISPDE 119
                         K   GKKRFRKK+   D  D EV +                 S  E
Sbjct: 106 EVVVEKKSSVSESRKSDKGKKRFRKKSGQSDESDGEVAVREDSRHVRRKVSEEDDGSESE 165

Query: 120 EEILKDQREKEELEQHMRVRDKARTRKLAR----KKEQEVIRRRSRVAEQDGIQSLRKVS 175
           EE ++DQ+E+EELEQH++ RD ARTRKL      KKE+E   RR+   E+D + SLRKVS
Sbjct: 166 EERVRDQKEREELEQHLKDRDTARTRKLTEQTLSKKEKEEAVRRANALEKDDLYSLRKVS 225

Query: 176 RQXXXXXXXXXXXXXXXDDIEDEWYLFEGEKLTEAXXXXXXXXXXXXXXXXXXIEDADDV 235
           RQ               D+IEDE YLF GEKLTE                    +D D+V
Sbjct: 226 RQEYLKKREQKKLDELRDEIEDEQYLFGGEKLTETELREFRYKKELYDLVKKRTQDEDNV 285

Query: 236 DEYRMPEAYDQEGGVNQEKRFSVAMQRYRDPNAEGKMNSFAEQEAWEKHQIGKGTLQYGS 295
           +EYR+P+AYDQEGGV+QEKRFSVA+QRYRD ++  KMN FAEQEAWE HQIGK TL++G+
Sbjct: 286 EEYRIPDAYDQEGGVDQEKRFSVAVQRYRDLDSTEKMNPFAEQEAWEDHQIGKATLKFGA 345

Query: 296 KNRRQVSDDYQFVFEDQIEFIKESVMDGDKFDYKETEDSLEKX---XXXXXXXXXXXXXX 352
           KN+ Q SDDYQFVFEDQI FIKESVM G+  +Y++  D+ +K                  
Sbjct: 346 KNK-QASDDYQFVFEDQINFIKESVMAGE--NYEDAMDAKQKSQDLAEKTALEELQEVRR 402

Query: 353 XXPIYSFRDELLQSVHDHQVLVIVGETGSGKTTQIPQYLHEAGYTKHGMIACTQPXXXXX 412
             PIY++RD+LL++V +HQVLVIVG+TGSGKTTQIPQYLHEAGYTK G + CTQP     
Sbjct: 403 SLPIYTYRDQLLKAVEEHQVLVIVGDTGSGKTTQIPQYLHEAGYTKRGKVGCTQPRRVAA 462

Query: 413 XXXXXXXXKEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPELESYSVLM 472
                   +EMGVKLGHEVGYSIRFEDCTS+KT+LKYMTDGMLLRE LGEP+L SYSV++
Sbjct: 463 MSVAARVAQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLRELLGEPDLASYSVVI 522

Query: 473 VDEAHERTLSTDILFGLVKDISRHRPELRLLISSATLDAAKFSDYFDSAPIFKIPGRRYP 532
           VDEAHERTLSTDILFGLVKDI+R RP+L+LLISSAT+DA KFSDYFD+APIF  PGRRYP
Sbjct: 523 VDEAHERTLSTDILFGLVKDIARFRPDLKLLISSATMDAEKFSDYFDTAPIFSFPGRRYP 582

Query: 533 VEINFTKAPEADYLDAAIVTSLQIHVNHPPGDILIFLTGQDEIETAEEILKHRTRCLGAK 592
           VEIN+T APEADY+DAAIVT L IHV  P GDIL+F TGQ+EIETAEEILKHR R LG K
Sbjct: 583 VEINYTSAPEADYMDAAIVTILTIHVREPLGDILVFFTGQEEIETAEEILKHRIRGLGTK 642

Query: 593 IAELIICPIYGNLPSELQAKIFEPTPEGARKVVLATNIAETSLTID 638
           I ELIICPIY NLPSELQAKIFEPTPEGARKVVLATNIAETSLTID
Sbjct: 643 IRELIICPIYANLPSELQAKIFEPTPEGARKVVLATNIAETSLTID 688


>AT1G32490.2 | Symbols: ESP3 | RNA helicase family protein |
           chr1:11742356-11749286 REVERSE LENGTH=1034
          Length = 1034

 Score =  714 bits (1842), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/646 (59%), Positives = 449/646 (69%), Gaps = 24/646 (3%)

Query: 4   LVNYNLSSS-ETGAFAEEIFSRVPRSSSGSNQYWKQEREAAMLARRQKSYTILKXXXXXX 62
           LV+Y  SSS +T +FAEEIF+RVPR ++G N Y K E EAAML R+QK+Y +L       
Sbjct: 46  LVDYGFSSSGDTRSFAEEIFARVPRKTAGVNLYQKHEAEAAMLVRKQKTYALLDADDDED 105

Query: 63  XXXXXXXXXQDNPSKLYSGKKRFRKKTEVQD--DDEV-IXXXXXXXXXXXXXXXXISPDE 119
                         K   GKKRFRKK+   D  D EV +                 S  E
Sbjct: 106 EVVVEKKSSVSESRKSDKGKKRFRKKSGQSDESDGEVAVREDSRHVRRKVSEEDDGSESE 165

Query: 120 EEILKDQREKEELEQHMRVRDKARTRKLAR----KKEQEVIRRRSRVAEQDGIQSLRKVS 175
           EE ++DQ+E+EELEQH++ RD ARTRKL      KKE+E   RR+   E+D + SLRKVS
Sbjct: 166 EERVRDQKEREELEQHLKDRDTARTRKLTEQTLSKKEKEEAVRRANALEKDDLYSLRKVS 225

Query: 176 RQXXXXXXXXXXXXXXXDDIEDEWYLFEGEKLTEAXXXXXXXXXXXXXXXXXXIEDADDV 235
           RQ               D+IEDE YLF GEKLTE                    +D D+V
Sbjct: 226 RQEYLKKREQKKLDELRDEIEDEQYLFGGEKLTETELREFRYKKELYDLVKKRTQDEDNV 285

Query: 236 DEYRMPEAYDQEGGVNQEKRFSVAMQRYRDPNAEGKMNSFAEQEAWEKHQIGKGTLQYGS 295
                     +EGGV+QEKRFSVA+QRYRD ++  KMN FAEQEAWE HQIGK TL++G+
Sbjct: 286 ----------EEGGVDQEKRFSVAVQRYRDLDSTEKMNPFAEQEAWEDHQIGKATLKFGA 335

Query: 296 KNRRQVSDDYQFVFEDQIEFIKESVMDGDKFDYKETEDSLEKXXXXXXXXXX---XXXXX 352
           KN+ Q SDDYQFVFEDQI FIKESVM G+  +Y++  D+ +K                  
Sbjct: 336 KNK-QASDDYQFVFEDQINFIKESVMAGE--NYEDAMDAKQKSQDLAEKTALEELQEVRR 392

Query: 353 XXPIYSFRDELLQSVHDHQVLVIVGETGSGKTTQIPQYLHEAGYTKHGMIACTQPXXXXX 412
             PIY++RD+LL++V +HQVLVIVG+TGSGKTTQIPQYLHEAGYTK G + CTQP     
Sbjct: 393 SLPIYTYRDQLLKAVEEHQVLVIVGDTGSGKTTQIPQYLHEAGYTKRGKVGCTQPRRVAA 452

Query: 413 XXXXXXXXKEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPELESYSVLM 472
                   +EMGVKLGHEVGYSIRFEDCTS+KT+LKYMTDGMLLRE LGEP+L SYSV++
Sbjct: 453 MSVAARVAQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLRELLGEPDLASYSVVI 512

Query: 473 VDEAHERTLSTDILFGLVKDISRHRPELRLLISSATLDAAKFSDYFDSAPIFKIPGRRYP 532
           VDEAHERTLSTDILFGLVKDI+R RP+L+LLISSAT+DA KFSDYFD+APIF  PGRRYP
Sbjct: 513 VDEAHERTLSTDILFGLVKDIARFRPDLKLLISSATMDAEKFSDYFDTAPIFSFPGRRYP 572

Query: 533 VEINFTKAPEADYLDAAIVTSLQIHVNHPPGDILIFLTGQDEIETAEEILKHRTRCLGAK 592
           VEIN+T APEADY+DAAIVT L IHV  P GDIL+F TGQ+EIETAEEILKHR R LG K
Sbjct: 573 VEINYTSAPEADYMDAAIVTILTIHVREPLGDILVFFTGQEEIETAEEILKHRIRGLGTK 632

Query: 593 IAELIICPIYGNLPSELQAKIFEPTPEGARKVVLATNIAETSLTID 638
           I ELIICPIY NLPSELQAKIFEPTPEGARKVVLATNIAETSLTID
Sbjct: 633 IRELIICPIYANLPSELQAKIFEPTPEGARKVVLATNIAETSLTID 678


>AT2G35340.1 | Symbols: MEE29 | helicase domain-containing protein |
           chr2:14872728-14879615 FORWARD LENGTH=1044
          Length = 1044

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/656 (57%), Positives = 447/656 (68%), Gaps = 28/656 (4%)

Query: 1   MRKLVNYNLS-SSETGAFAEEIFSRVPRSSSGSNQYWKQEREAAMLARRQKSYTILKXXX 59
           +R+LV    S S +T AFAEEI++R PR + G N Y +QE EAAML ++QK++++L+   
Sbjct: 43  VRELVECGFSLSGDTRAFAEEIYARAPRKTPGVNLYQQQEAEAAMLLKKQKTFSLLEADH 102

Query: 60  XXXXXXXXXXXXQDNPSKLYSGKKRFRKKTEV--QDDDEVIXXXXXXXXXXXXXXXXISP 117
                            K   G+KRFRKK+E    DDDEV+                +S 
Sbjct: 103 DEDENNVKKQSASKT-GKSDKGQKRFRKKSEQLEDDDDEVVIVREDKRNVRRK----VSE 157

Query: 118 DE-------EEILKDQREKEELEQHMRVRDKARTRKLAR----KKEQEVIRRRSRVAEQD 166
           DE       EE L+DQRE+EELEQH+R RD ARTRKL      KKEQE   RR    ++ 
Sbjct: 158 DEDDGTESEEERLRDQREREELEQHLRERDTARTRKLTEPKMSKKEQEEFVRRDSAVDKG 217

Query: 167 GIQSLRKVSRQXXXXXXXXXXXXXXXDDIEDEWYLFEGEKLTEAXXXXXXXXXXXXXXXX 226
            I+SLRK S Q               DDIEDE YLF  EKLTE                 
Sbjct: 218 DIESLRKFSWQEYMKKRKQKKVLELKDDIEDEPYLFGDEKLTEREIREFRYKREIYELIK 277

Query: 227 XXIEDADDVDEYRMPEAYDQEGGVNQEKRFSVAMQRYRDPNAEGKMNSFAEQEAWEKHQI 286
              ++ D+V EYRMP+AYDQ+G V+QEKRF+V++QRYRD  +  KMN FAEQEAWE HQI
Sbjct: 278 KSTQEEDNVGEYRMPDAYDQQGSVDQEKRFAVSVQRYRDMGSAEKMNPFAEQEAWEDHQI 337

Query: 287 GKGTLQYGSKNRRQVSDDYQFVFEDQIEFIKESVMDGDKFD----YKETEDSLEKXXXXX 342
               L++G+KN+ +VSD+Y+FVFEDQI+FIK SV+ GD ++     K ++DS  K     
Sbjct: 338 ENAALKFGAKNK-EVSDNYEFVFEDQIDFIKASVLAGDNYEDEMHAKPSQDSAGKSAFHM 396

Query: 343 XXXXXXXXXXXXPIYSFRDELLQSVHDHQVLVIVGETGSGKTTQIPQYLHEAGYTKHGMI 402
                       PIY++RD+LL +V DHQVL+IVGETGSGKTTQIPQYLHEAGYTK G +
Sbjct: 397 LQEDRKAL----PIYTYRDQLLNAVKDHQVLIIVGETGSGKTTQIPQYLHEAGYTKLGKV 452

Query: 403 ACTQPXXXXXXXXXXXXXKEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGE 462
            CTQP             +EMG KLGHEVGYSIRFEDCTSEKTILKYMTDGMLLRE LGE
Sbjct: 453 GCTQPRRVAAMSVAARVAQEMGGKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLRELLGE 512

Query: 463 PELESYSVLMVDEAHERTLSTDILFGLVKDISRHRPELRLLISSATLDAAKFSDYFDSAP 522
           P+L SYSV++VDEAHERTL TDILFGLVKDI+R RP+L+LLISSAT+DA KFSD+FD AP
Sbjct: 513 PDLGSYSVIIVDEAHERTLRTDILFGLVKDIARARPDLKLLISSATMDAEKFSDFFDQAP 572

Query: 523 IFKIPGRRYPVEINFTKAPEADYLDAAIVTSLQIHVNHPPGDILIFLTGQDEIETAEEIL 582
           IF+ PGRRYPV+I FT APEADY+DAAI T L IHV  P GD+L+FL GQ+EIE  EE L
Sbjct: 573 IFRFPGRRYPVDICFTTAPEADYMDAAITTVLTIHVKEPLGDVLVFLPGQEEIEAVEENL 632

Query: 583 KHRTRCLGAKIAELIICPIYGNLPSELQAKIFEPTPEGARKVVLATNIAETSLTID 638
           KH+ R LG KI ELIICPIY NLPSELQAKIFEPTPEGARKVVLATNIAETSLTID
Sbjct: 633 KHKIRGLGTKIRELIICPIYANLPSELQAKIFEPTPEGARKVVLATNIAETSLTID 688


>AT4G16680.1 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr4:9388613-9390774
           REVERSE LENGTH=656
          Length = 656

 Score =  481 bits (1239), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 242/411 (58%), Positives = 300/411 (72%), Gaps = 12/411 (2%)

Query: 229 IEDADDVDEYRMPEAYDQEGGVNQEKRFSVAMQRYRDPNAEGKMNSFAEQEAWEKHQIGK 288
           +E+  D   YR P+AYDQEG ++Q+KRF VA +RY +    G++    EQEAWE HQ  K
Sbjct: 100 VEELRDERRYRFPDAYDQEGCIDQKKRFDVAKERYCERRRSGRV--VTEQEAWEDHQAQK 157

Query: 289 GTLQYGSKNRRQVSDDYQFVFEDQIEFIKESV-MDGDKFDYKETEDSLEKXXXXXXXXXX 347
             +++G+K+++QV D Y+FVF+D   F++ES   +  K     ++ + EK          
Sbjct: 158 ARVRFGAKDKKQVVDGYEFVFDDLTGFVEESSEAETGKHRGCYSKTAAEKAREGREFL-- 215

Query: 348 XXXXXXXPIYSFRDELLQSVHDHQVLVIVGETGSGKTTQIPQYLHEAGYTKHGMIACTQP 407
                  PI+ +R+ELL+ + ++QVLVIVGETGSGKTTQIPQYL EAGYTK G I CTQP
Sbjct: 216 -------PIHGYREELLKLIEENQVLVIVGETGSGKTTQIPQYLQEAGYTKRGKIGCTQP 268

Query: 408 XXXXXXXXXXXXXKEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPELES 467
                        +E+GVKLGHEVGYSIRFEDCTSEKT++KYMTDGMLLRE L EP+L+S
Sbjct: 269 RRVAAMSVASRVAQEVGVKLGHEVGYSIRFEDCTSEKTVIKYMTDGMLLRELLIEPKLDS 328

Query: 468 YSVLMVDEAHERTLSTDILFGLVKDISRHRPELRLLISSATLDAAKFSDYFDSAPIFKIP 527
           YSV+++DEAHERTLSTDILF LVKD+++ RP+LRL+ISSATL+A KFS+YFDSA I+ IP
Sbjct: 329 YSVIIIDEAHERTLSTDILFALVKDVAKVRPDLRLIISSATLEAKKFSEYFDSARIYLIP 388

Query: 528 GRRYPVEINFTKAPEADYLDAAIVTSLQIHVNHPPGDILIFLTGQDEIETAEEILKHRTR 587
           GRRYPVE  F K PE DYL+  I T +QIH     GDIL+FLTGQ+EIET E  LK R  
Sbjct: 389 GRRYPVEKLFRKCPEPDYLETVIRTVVQIHQTEAIGDILVFLTGQEEIETVETNLKRRMM 448

Query: 588 CLGAKIAELIICPIYGNLPSELQAKIFEPTPEGARKVVLATNIAETSLTID 638
            LG K +E+IICPIY NLP+ LQAK+FEP P+G RKVVLATNIAETSLTID
Sbjct: 449 DLGTKGSEIIICPIYSNLPTPLQAKVFEPAPKGTRKVVLATNIAETSLTID 499


>AT3G26560.1 | Symbols:  | ATP-dependent RNA helicase, putative |
           chr3:9750122-9753719 REVERSE LENGTH=1168
          Length = 1168

 Score =  369 bits (948), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 172/284 (60%), Positives = 215/284 (75%)

Query: 355 PIYSFRDELLQSVHDHQVLVIVGETGSGKTTQIPQYLHEAGYTKHGMIACTQPXXXXXXX 414
           PIY  + EL+Q+VHD+QVLV++GETGSGKTTQ+ QYL EAGYT  G I CTQP       
Sbjct: 516 PIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTKGKIGCTQPRRVAAMS 575

Query: 415 XXXXXXKEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPELESYSVLMVD 474
                 +E G +LG EVGY+IRFEDCT   T++KYMTDGMLLRE L +  L  YSV+M+D
Sbjct: 576 VAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLD 635

Query: 475 EAHERTLSTDILFGLVKDISRHRPELRLLISSATLDAAKFSDYFDSAPIFKIPGRRYPVE 534
           EAHERT+ TD+LFGL+K + + R +LRL+++SATLDA KFS YF +  IF IPGR +PVE
Sbjct: 636 EAHERTIHTDVLFGLLKKLMKRRLDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVE 695

Query: 535 INFTKAPEADYLDAAIVTSLQIHVNHPPGDILIFLTGQDEIETAEEILKHRTRCLGAKIA 594
           I +TK PE DYLDAA++T LQIH+  P GDIL+FLTGQ+EI++A + L  R + LG  + 
Sbjct: 696 ILYTKQPETDYLDAALITVLQIHLTEPEGDILVFLTGQEEIDSACQSLYERMKGLGKNVP 755

Query: 595 ELIICPIYGNLPSELQAKIFEPTPEGARKVVLATNIAETSLTID 638
           ELII P+Y  LPSE+Q++IF+P P G RKVV+ATNIAE SLTID
Sbjct: 756 ELIILPVYSALPSEMQSRIFDPPPPGKRKVVVATNIAEASLTID 799


>AT5G13010.1 | Symbols: EMB3011 | RNA helicase family protein |
           chr5:4122747-4128660 FORWARD LENGTH=1255
          Length = 1255

 Score =  333 bits (854), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 155/288 (53%), Positives = 213/288 (73%), Gaps = 4/288 (1%)

Query: 355 PIYSFRDELLQSVHDHQVLVIVGETGSGKTTQIPQYLHEAGYTKHGMIACTQPXXXXXXX 414
           PI+S RDELLQ + ++QV+V+VGETGSGKTTQ+ QYLHE GYT +G++ CTQP       
Sbjct: 559 PIFSVRDELLQVIRENQVIVVVGETGSGKTTQLTQYLHEDGYTINGIVGCTQPRRVAAMS 618

Query: 415 XXXXXXKEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPELESYSVLMVD 474
                 +EM  +LG ++GY+IRFED T   T++KYMTDG+LLRE L + +L+ Y V+++D
Sbjct: 619 VAKRVSEEMETELGDKIGYAIRFEDVTGPNTVIKYMTDGVLLRETLKDSDLDKYRVVVMD 678

Query: 475 EAHERTLSTDILFGLVKDISRHRPELRLLISSATLDAAKFSDYFDSAPIFKIPGRRYPVE 534
           EAHER+L+TD+LFG++K +   R + +L+++SATL+A KFS++F S PIF IPGR +PV 
Sbjct: 679 EAHERSLNTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSNFFGSVPIFNIPGRTFPVN 738

Query: 535 INFTKAPEADYLDAAIVTSLQIHVNHPPGDILIFLTGQDEIETAEEILKHRTRCLGA--- 591
           I ++K P  DY++AA+  ++ IH+  PPGDILIF+TGQDEIE A   LK R   L +   
Sbjct: 739 ILYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACFSLKERMEQLVSSSS 798

Query: 592 -KIAELIICPIYGNLPSELQAKIFEPTPEGARKVVLATNIAETSLTID 638
            +I  L+I PIY  LP++LQAKIF+   +GARK ++ATNIAETSLT+D
Sbjct: 799 REITNLLILPIYSQLPADLQAKIFQKPEDGARKCIVATNIAETSLTVD 846


>AT2G47250.1 | Symbols:  | RNA helicase family protein |
           chr2:19399923-19402981 REVERSE LENGTH=729
          Length = 729

 Score =  319 bits (817), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 152/297 (51%), Positives = 211/297 (71%), Gaps = 13/297 (4%)

Query: 355 PIYSFRDELLQSVHDHQVLVIVGETGSGKTTQIPQYLHEAGYTKHG------MIACTQPX 408
           P++  +D+ L +++ +Q L++VGETGSGKTTQIPQ++ +A    +       ++ CTQP 
Sbjct: 66  PVWLQKDDFLNTLNSNQTLILVGETGSGKTTQIPQFVLDAVVADNSDKGRKWLVGCTQPR 125

Query: 409 XXXXXXXXXXXXKEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPELESY 468
                        EM V +G EVGYSIRFEDCTS +T+LKY+TDGMLLRE + +P LE Y
Sbjct: 126 RVAAMSVSRRVADEMDVSIGEEVGYSIRFEDCTSSRTMLKYLTDGMLLREAMADPLLERY 185

Query: 469 SVLMVDEAHERTLSTDILFGLVKDISRHRPELRLLISSATLDAAKFSDYFDSAPIFKIPG 528
            V+++DEAHERTL+TD+LFGL+K++ R+RP+L+L++ SATL+A KF +YF  AP+ K+PG
Sbjct: 186 KVIILDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQEYFSGAPLMKVPG 245

Query: 529 RRYPVEINFTKAPEADYLDAAIVTSLQIHVNHPPGDILIFLTGQDEIETAEEILKHRTRC 588
           R +PVEI +T+ PE DYL+AAI T +QIH+  PPGDIL+FLTG++EIE A   +      
Sbjct: 246 RLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKINKEVSN 305

Query: 589 LGAKIAELIICPIYGNLPSELQAKIFEPTP----EG---ARKVVLATNIAETSLTID 638
           LG ++  + + P+Y  LP  +Q KIF+P P    EG    RK+V++TNIAETSLTID
Sbjct: 306 LGDQVGPVKVVPLYSTLPPAMQQKIFDPAPVPLTEGGPAGRKIVVSTNIAETSLTID 362


>AT3G62310.1 | Symbols:  | RNA helicase family protein |
           chr3:23057516-23060561 REVERSE LENGTH=726
          Length = 726

 Score =  318 bits (815), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 150/297 (50%), Positives = 213/297 (71%), Gaps = 13/297 (4%)

Query: 355 PIYSFRDELLQSVHDHQVLVIVGETGSGKTTQIPQYLHEA------GYTKHGMIACTQPX 408
           P++  ++E L++++++Q L++VGETGSGKTTQIPQ++ +A         +  ++ CTQP 
Sbjct: 62  PVWLQKEEFLKTLNNNQTLILVGETGSGKTTQIPQFVIDAVDAETSDKRRKWLVGCTQPR 121

Query: 409 XXXXXXXXXXXXKEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPELESY 468
                       +EM V +G EVGYSIRFEDC+S +T+LKY+TDGMLLRE + +P LE Y
Sbjct: 122 RVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSPRTVLKYLTDGMLLREAMADPLLERY 181

Query: 469 SVLMVDEAHERTLSTDILFGLVKDISRHRPELRLLISSATLDAAKFSDYFDSAPIFKIPG 528
            V+++DEAHERTL+TD+LFGL+K++ ++RP+L+L++ SATL+A KF DYF  AP+ K+PG
Sbjct: 182 KVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQDYFSGAPLMKVPG 241

Query: 529 RRYPVEINFTKAPEADYLDAAIVTSLQIHVNHPPGDILIFLTGQDEIETAEEILKHRTRC 588
           R +PVEI +T+ PE DYL+AAI T +QIH+  PPGDIL+FLTG++EIE A   +      
Sbjct: 242 RLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKINKEVGN 301

Query: 589 LGAKIAELIICPIYGNLPSELQAKIFEPTPE-------GARKVVLATNIAETSLTID 638
           LG ++  + + P+Y  LP  +Q KIF+P PE         RK+V++TNIAETSLTID
Sbjct: 302 LGDQVGPIKVVPLYSTLPPAMQQKIFDPAPEPVTEGGPPGRKIVVSTNIAETSLTID 358


>AT1G27900.1 | Symbols:  | RNA helicase family protein |
           chr1:9715615-9720346 REVERSE LENGTH=700
          Length = 700

 Score =  288 bits (738), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 137/286 (47%), Positives = 197/286 (68%), Gaps = 2/286 (0%)

Query: 355 PIYSFRDELLQSVHDHQVLVIVGETGSGKTTQIPQYLHEAGYTKHGMIACTQPXXXXXXX 414
           PI  F ++++++V  + V+VI+GETGSGK+TQ+ Q LH  GYTK G+IA TQP       
Sbjct: 5   PILQFEEKIVETVEKNSVVVIIGETGSGKSTQLSQILHRHGYTKSGVIAITQPRRVAAVS 64

Query: 415 XXXXXXKEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPELESYSVLMVD 474
                 +E+ V LG +VGY+IRFED T+ KT +KY+TDG+LLRE L  P L+ YSV+++D
Sbjct: 65  VARRVAQELDVPLGEDVGYAIRFEDRTTSKTRIKYLTDGVLLRESLSNPMLDDYSVIILD 124

Query: 475 EAHERTLSTDILFGLVKDISRHRP-ELRLLISSATLDAAKFSDYFDSAPIFKIPGRRYPV 533
           EAHER+L+TDIL GLVK + R R    ++LI+SATLD  K S++F   P+  +PG+ YPV
Sbjct: 125 EAHERSLNTDILLGLVKRLVRIRASNFKVLITSATLDGEKVSEFFSGCPVLNVPGKLYPV 184

Query: 534 EINFTKAPEADYLDAAIVTSLQIHVNHPPGDILIFLTGQDEIETAEEILKHRTRCLG-AK 592
           EI ++K     Y+++++  ++ IHV  P GDILIF+TGQD+IE     L+ + R L    
Sbjct: 185 EILYSKERPVSYIESSLKVAIDIHVREPEGDILIFMTGQDDIEKLVSRLEEKVRSLAEGS 244

Query: 593 IAELIICPIYGNLPSELQAKIFEPTPEGARKVVLATNIAETSLTID 638
             + II P++G+LP E+Q ++F P P   R+ +++TNIAETSLT+D
Sbjct: 245 CMDAIIYPLHGSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVD 290


>AT4G18465.1 | Symbols:  | RNA helicase family protein |
           chr4:10197056-10201611 FORWARD LENGTH=695
          Length = 695

 Score =  286 bits (733), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 148/303 (48%), Positives = 201/303 (66%), Gaps = 19/303 (6%)

Query: 355 PIYSFRDELLQSVHDHQVLVIVGETGSGKTTQIPQYLHEAGYTKHG-MIACTQPXXXXXX 413
           P+Y +R E+L  V +H   +IVGETGSGKTTQIPQYL EAG+ + G +IACTQP      
Sbjct: 49  PVYKYRTEILYLVENHATTIIVGETGSGKTTQIPQYLKEAGWAEGGRVIACTQPRRLAVQ 108

Query: 414 XXXXXXXKEMGVKLGHEVGYSIRFED-CTSEKTILKYMTDGMLLREFLGEPELESYSVLM 472
                  +EMGV LG EVGY+IRFED  TS  T +K++TDG+L+RE + +P L  YSV+M
Sbjct: 109 AVSARVAEEMGVNLGEEVGYTIRFEDHTTSGVTSVKFLTDGVLIREMMEDPLLTKYSVIM 168

Query: 473 VDEAHERTLSTDILFGLVKDISRHRPELRLLISSATLDAAKFSDYFDS-----AP----- 522
           +DEAHER++STDIL GL+K I R RPELRL+ISSAT++A   S++F+S     AP     
Sbjct: 169 IDEAHERSISTDILLGLLKKIQRRRPELRLIISSATIEAKTMSNFFNSSKKRHAPEGSTP 228

Query: 523 -------IFKIPGRRYPVEINFTKAPEADYLDAAIVTSLQIHVNHPPGDILIFLTGQDEI 575
                  I  + GR + V+I++ + P +DY+ + + T L I+   PPGD+L+FLTGQ++I
Sbjct: 229 GPKLEPAILSVEGRGFSVKIHYVEEPVSDYIRSVVSTILLINEREPPGDVLVFLTGQEDI 288

Query: 576 ETAEEILKHRTRCLGAKIAELIICPIYGNLPSELQAKIFEPTPEGARKVVLATNIAETSL 635
           ETA ++L+          + L+  P+Y  L    Q  IF PTP G RKV+L+TNIAETSL
Sbjct: 289 ETAIKLLEEEAHSNQKNSSGLLPLPLYSGLSRSEQELIFTPTPRGKRKVILSTNIAETSL 348

Query: 636 TID 638
           T++
Sbjct: 349 TLE 351


>AT1G26370.1 | Symbols:  | RNA helicase family protein |
           chr1:9122030-9125368 REVERSE LENGTH=717
          Length = 717

 Score =  276 bits (707), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 147/325 (45%), Positives = 196/325 (60%), Gaps = 42/325 (12%)

Query: 355 PIYSFRDELLQSVHDHQVLVIVGETGSGKTTQIPQYLHEAGYTKHG-MIACTQPXXXXXX 413
           PI S    L++ V  + +L+IVGETGSGKTTQ+PQ+L+ AG+ + G MI  TQP      
Sbjct: 42  PIASVEKRLVEEVQKNDILIIVGETGSGKTTQLPQFLYNAGFCREGKMIGITQPRRIAAV 101

Query: 414 XXXXXXXKEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPELESYSVLMV 473
                  +E  V+LG +VGYSIRF+D TS  T LKYMTDG+LLRE L +P L  YSV++V
Sbjct: 102 TVAKRVAEECEVQLGQKVGYSIRFDDTTSGSTRLKYMTDGLLLREALLDPHLSRYSVIIV 161

Query: 474 DEAHERTLSTDILFGLVKDISRHRPE---------------------------------- 499
           DEAH+R++ TD+L  L+K I R R +                                  
Sbjct: 162 DEAHDRSVHTDVLLALLKKIQRTRSQPVSEKTEFGNVASQVQTTTRDANGPQQNGVLKGY 221

Query: 500 -------LRLLISSATLDAAKFSDYFDSAPIFKIPGRRYPVEINFTKAPEADYLDAAIVT 552
                  L+L+I SA+LDA  FS+YF  A    + GR++PV+I +T  PE+DY+DA +VT
Sbjct: 222 QGRKLSPLKLIIMSASLDARVFSEYFGGAKAVHVQGRQFPVDILYTVHPESDYVDATLVT 281

Query: 553 SLQIHVNHPPGDILIFLTGQDEIETAEEILKHRTRCLGAKIAELIICPIYGNLPSELQAK 612
             QIH    PGDIL+FLTGQDEIE+ E +++ R + +     +L+   I+  LPSE Q K
Sbjct: 282 IFQIHFEEKPGDILVFLTGQDEIESVERLVQERLQNIPEDKRKLLPLAIFSALPSEQQMK 341

Query: 613 IFEPTPEGARKVVLATNIAETSLTI 637
           +F P P G RKV+LATNIAETS+TI
Sbjct: 342 VFAPAPTGFRKVILATNIAETSITI 366


>AT1G33390.1 | Symbols: ATFAS4, FAS4 | RNA helicase family protein |
           chr1:12099738-12104108 REVERSE LENGTH=1237
          Length = 1237

 Score =  174 bits (441), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 96/275 (34%), Positives = 154/275 (56%), Gaps = 34/275 (12%)

Query: 355 PIYSFRDELLQSVHDHQVLVIVGETGSGKTTQIPQYLHEAGY------TKHGMIACTQPX 408
           PI     E++++++ H  ++I G+TG GKTTQ+PQ+L+EAG+      ++ G+I  TQP 
Sbjct: 242 PIVMMEQEIMEAINRHPAVIISGQTGCGKTTQVPQFLYEAGFGSKQFSSRSGIIGITQPR 301

Query: 409 XXXXXXXXXXXXKEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPELESY 468
                        E+GV+LG EVG+ +R++    E + +K+MTDG+LLRE   +  L  Y
Sbjct: 302 RVAVLATAKRVAFELGVRLGKEVGFQVRYDKKIGENSSIKFMTDGILLREIQNDFLLRRY 361

Query: 469 SVLMVDEAHERTLSTDILFGLVKDISRHRPE-----------------------LRLLIS 505
           SV+++DEAHER+L+TDIL G++  + + R E                       L+L++ 
Sbjct: 362 SVIILDEAHERSLNTDILIGMLTRVIKIRQEYYEEQQKSLQSGGTVTSECQITPLKLILM 421

Query: 506 SATLDAAKFSD----YFDSAPIFKIPGRRYPVEINFTKAPE-ADYLDAAIVTSLQIHVNH 560
           SATL    F      + +  P+ ++P R+YPV I+F+K  E  DY+  A    + IH   
Sbjct: 422 SATLRVEDFVSGKRLFPNIPPLIEVPTRQYPVTIHFSKKTEIVDYIGEAYKKVMSIHKKL 481

Query: 561 PPGDILIFLTGQDEIETAEEILKHRTRCLGAKIAE 595
           P G IL+F+TGQ E++   E L+  ++ L  + A+
Sbjct: 482 PQGGILVFVTGQREVDYLCEKLRKSSKELVVQAAK 516


>AT5G10370.1 | Symbols:  | helicase domain-containing protein / IBR
           domain-containing protein / zinc finger protein-related
           | chr5:3261245-3267188 FORWARD LENGTH=1775
          Length = 1775

 Score =  173 bits (438), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 108/293 (36%), Positives = 160/293 (54%), Gaps = 20/293 (6%)

Query: 355 PIYSFRDELLQSVHDHQVLVIVGETGSGKTTQIPQYLHEAGYTKHGMIACTQPXXXXXXX 414
           PIY++R ++L+ +H  Q++V++GETGSGK+TQ+ Q+L ++G      I CTQP       
Sbjct: 307 PIYAYRRQILKKIHREQIMVLIGETGSGKSTQLVQFLADSGVAASESIVCTQPRKIAAMT 366

Query: 415 XXXXXXKEM-GVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPELESYSVLMV 473
                 +E  G    + V  +  F       + + YMTD  LL+ ++ +  L   S +++
Sbjct: 367 LADRVREESSGCYEENTVSCTPTFSSTEEISSKVVYMTDNCLLQHYMKDRSLSGISCVII 426

Query: 474 DEAHERTLSTDILFGLVKDISRHRPELRLLISSATLDAAKFSDYFDSAPIFKIPGRRYPV 533
           DEAHER+L+TD+L  L+K +   R +LRL+I SAT DA + S YF S  I  + GR +PV
Sbjct: 427 DEAHERSLNTDLLLALLKKLLSRRIDLRLVIMSATADAKQLSQYFFSCGILLVNGRNFPV 486

Query: 534 EINFTKAPE---------ADYLDAAIVTSLQIHVNHPPGDILIFLTGQDEIETAEEILKH 584
           EI ++ +           A Y+   +  +++IH     G IL FLT Q E+E A      
Sbjct: 487 EIVYSPSDTEENSVVGGIASYVGDVVKMAVEIHKTEKEGTILAFLTSQAEVEWA------ 540

Query: 585 RTRCLGAKIAELIICPIYGNLPSELQAKIFEPTPEGARKVVLATNIAETSLTI 637
              C        I  P++G L  E Q ++F+  P G RKV+ ATNIAETSLTI
Sbjct: 541 ---CERFITPSAIALPLHGKLSFEEQFRVFQNHP-GRRKVIFATNIAETSLTI 589


>AT4G01020.1 | Symbols:  | helicase domain-containing protein / IBR
           domain-containing protein / zinc finger protein-related
           | chr4:439086-445043 FORWARD LENGTH=1787
          Length = 1787

 Score =  164 bits (414), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 105/293 (35%), Positives = 156/293 (53%), Gaps = 20/293 (6%)

Query: 355 PIYSFRDELLQSVHDHQVLVIVGETGSGKTTQIPQYLHEAGYTKHGMIACTQPXXXXXXX 414
           PIY++R ++L+ +H  Q++V++GETGSGK+TQ+ Q+L ++G      I CTQP       
Sbjct: 304 PIYAYRRQILKKIHCEQIMVLIGETGSGKSTQLVQFLADSGVAASESIVCTQPRKIAAMT 363

Query: 415 XXXXXXKEM-GVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPELESYSVLMV 473
                 +E  G    + V  +  F       + + YMTD  LL+ ++ +  L   S +++
Sbjct: 364 LTDRVREESSGCYEENTVSCTPTFSSTEEISSKVVYMTDNCLLQHYMKDRSLSGISCVII 423

Query: 474 DEAHERTLSTDILFGLVKDISRHRPELRLLISSATLDAAKFSDYFDSAPIFKIPGRRYPV 533
           DEAHER+L+TD+L  L++ +   R +LRL+I SAT DA + S Y     I  + GR +PV
Sbjct: 424 DEAHERSLNTDLLLALLRKLLSRRIDLRLVIMSATADANQLSQYLFDCGILHVNGRNFPV 483

Query: 534 EINFTKAPE---------ADYLDAAIVTSLQIHVNHPPGDILIFLTGQDEIETAEEILKH 584
           EI ++ +           A Y    +  +++IH     G IL FLT Q E+E A      
Sbjct: 484 EIVYSPSGTEENSVVGRIASYAGDVVKMAVEIHKTEKEGTILAFLTSQAEVEWA------ 537

Query: 585 RTRCLGAKIAELIICPIYGNLPSELQAKIFEPTPEGARKVVLATNIAETSLTI 637
              C        I  P++G L  E Q  +F+  P G RKV+ ATNIAETSLTI
Sbjct: 538 ---CERFVAPSAIALPLHGKLSFEEQFMVFQNYP-GRRKVIFATNIAETSLTI 586


>AT2G01130.1 | Symbols:  | DEA(D/H)-box RNA helicase family protein
           | chr2:88847-94635 REVERSE LENGTH=1113
          Length = 1113

 Score =  151 bits (381), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 111/352 (31%), Positives = 155/352 (44%), Gaps = 68/352 (19%)

Query: 355 PIYSFRDELLQSVHDHQVLVIVGETGSGKTTQIPQYLHE----AGYTKHGMIACTQPXXX 410
           P +  R  +L ++  +QV+VI GETG GKTTQIPQ++ E    A       I CTQP   
Sbjct: 221 PAFKQRHSVLTAISQNQVIVISGETGCGKTTQIPQFILESEIEANRGAFSSIICTQPRRI 280

Query: 411 XXXXXXXXXXKEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPELESYSV 470
                      E G +LG  VGY +R E      T L + T G+LLR  L +  L   + 
Sbjct: 281 SAMSVSERVAYERGEQLGESVGYKVRLEGVKGRDTRLLFCTTGILLRRLLVDRNLRGVTH 340

Query: 471 LMVDEAHERTLSTDILFGLVKDISRHRPELRLLISSATLDAAKFSDYFDSAPIFKIPGRR 530
           ++VDE HER ++ D L  ++KD+   R EL+L++ SATLDA  FS YF  A +  IPG  
Sbjct: 341 VIVDEIHERGMNEDFLLIILKDLLSRRSELKLILMSATLDAELFSSYFGGAGVIYIPGFT 400

Query: 531 YPVEINFTK----------APEADYLDAAIVTSLQIHVNHPPG-DILIFLTGQDEI---- 575
           YPV  +F +           P     D     + +++   P      I    +D +    
Sbjct: 401 YPVRSHFLEDILEMTRYRLTPYNQIDDYGQERTWKMNKQIPKKRKSQITFVVEDALRAAD 460

Query: 576 ------ETAEEILKHRTRCLGAKIAELIIC------------------------------ 599
                 ET E +      C+G  + E ++C                              
Sbjct: 461 FKEFSPETRESLSCWYPDCIGFNLIEFLLCNICENEGPGGILIFLTGWDDISSLKEKLQI 520

Query: 600 -PIYGN------------LPSELQAKIFEPTPEGARKVVLATNIAETSLTID 638
            PI+GN            + +  Q  IFE    G RK+VLATNIAETS+TI+
Sbjct: 521 HPIFGNPDLVMLLACHGSMETFEQRLIFEEPASGVRKIVLATNIAETSITIN 572


>AT2G35920.1 | Symbols:  | RNA helicase family protein |
           chr2:15075674-15080506 FORWARD LENGTH=995
          Length = 995

 Score =  147 bits (372), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 77/183 (42%), Positives = 108/183 (59%), Gaps = 4/183 (2%)

Query: 355 PIYSFRDELLQSVHDHQVLVIVGETGSGKTTQIPQY-LHEAGYTKHGM---IACTQPXXX 410
           P +  ++E L SV  +QVLV+ GETG GKTTQ+PQ+ L E   +  G    I CTQP   
Sbjct: 229 PAFKMKEEFLNSVSQNQVLVVSGETGCGKTTQLPQFILEEEISSLRGADCNIICTQPRRI 288

Query: 411 XXXXXXXXXXKEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPELESYSV 470
                      E G  +G  VGY IR E   S++T L + T G+LLR  + +P L + S 
Sbjct: 289 SAISVASRISAERGESIGESVGYQIRLESKRSDQTRLLFCTTGVLLRRLIEDPNLTNVSH 348

Query: 471 LMVDEAHERTLSTDILFGLVKDISRHRPELRLLISSATLDAAKFSDYFDSAPIFKIPGRR 530
           L+VDE HER ++ D L  +++D+   RP+LRL++ SAT++A  FS YF ++P   IPG  
Sbjct: 349 LLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATINADMFSTYFGNSPTMHIPGFT 408

Query: 531 YPV 533
           +PV
Sbjct: 409 FPV 411



 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 51/76 (67%), Gaps = 2/76 (2%)

Query: 563 GDILIFLTGQDEIETAEEILKHRTRCLGAKIAELIICPIYGNLPSELQAKIFEPTPEGAR 622
           G IL+FLTG DEI    E + +    LG   ++ ++ P++G++P+  Q +IF+  P   R
Sbjct: 504 GAILVFLTGWDEISKLLEKI-NMNNFLGDS-SKFLVLPLHGSMPTVNQREIFDRPPPNKR 561

Query: 623 KVVLATNIAETSLTID 638
           K+VLATNIAE+S+TID
Sbjct: 562 KIVLATNIAESSITID 577


>AT1G48650.2 | Symbols:  | DEA(D/H)-box RNA helicase family protein
           | chr1:17989517-17995169 REVERSE LENGTH=1206
          Length = 1206

 Score =  145 bits (367), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 79/199 (39%), Positives = 112/199 (56%), Gaps = 8/199 (4%)

Query: 355 PIYSFRDELLQSVHDHQVLVIVGETGSGKTTQIPQYLHE----AGYTKHGMIACTQPXXX 410
           P Y  +D LL+++  +QV+V+ GETG GKTTQ+PQY+ E    A       I CTQP   
Sbjct: 300 PAYKEKDALLKAIAANQVVVVSGETGCGKTTQLPQYILESEIEAARGATCSIICTQPRRI 359

Query: 411 XXXXXXXXXXKEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPELESYSV 470
                      E G ++G  VGY +R E      T L + T G+LLR  L +  L+  + 
Sbjct: 360 SAISVSERVAAERGEQIGESVGYKVRLEGMRGRDTRLLFCTTGVLLRRLLVDRSLKGVTH 419

Query: 471 LMVDEAHERTLSTDILFGLVKDISRHRPELRLLISSATLDAAKFSDYFDSAPIFKIPGRR 530
           ++VDE HER ++ D L  ++KD+   RP+L+L++ SATL+A  FS YF  AP   IPG  
Sbjct: 420 VVVDEIHERGMNEDFLLIVLKDLLPRRPDLKLILMSATLNAELFSSYFGGAPAMHIPGFT 479

Query: 531 YPVEINFTKAPEADYLDAA 549
           YPV  +F +    DYL+ +
Sbjct: 480 YPVRAHFLE----DYLETS 494



 Score = 62.8 bits (151), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 562 PGDILIFLTGQDEIETAEEILKHRTRCLGAKIAELIICPIYGNLPSELQAKIFEPTPEGA 621
           PG +L+F+TG D+I + +  L+  +         L+ C  +G++ S  Q  IF+  PEG 
Sbjct: 578 PGAVLVFMTGWDDINSLKNQLEAHSLLGDPNKVLLLAC--HGSMASSEQRLIFDRPPEGI 635

Query: 622 RKVVLATNIAETSLTID 638
           RK+VLATN+AETS+TI+
Sbjct: 636 RKIVLATNMAETSITIN 652


>AT1G48650.1 | Symbols:  | DEA(D/H)-box RNA helicase family protein
           | chr1:17989670-17995169 REVERSE LENGTH=1197
          Length = 1197

 Score =  145 bits (367), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 79/199 (39%), Positives = 112/199 (56%), Gaps = 8/199 (4%)

Query: 355 PIYSFRDELLQSVHDHQVLVIVGETGSGKTTQIPQYLHE----AGYTKHGMIACTQPXXX 410
           P Y  +D LL+++  +QV+V+ GETG GKTTQ+PQY+ E    A       I CTQP   
Sbjct: 300 PAYKEKDALLKAIAANQVVVVSGETGCGKTTQLPQYILESEIEAARGATCSIICTQPRRI 359

Query: 411 XXXXXXXXXXKEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPELESYSV 470
                      E G ++G  VGY +R E      T L + T G+LLR  L +  L+  + 
Sbjct: 360 SAISVSERVAAERGEQIGESVGYKVRLEGMRGRDTRLLFCTTGVLLRRLLVDRSLKGVTH 419

Query: 471 LMVDEAHERTLSTDILFGLVKDISRHRPELRLLISSATLDAAKFSDYFDSAPIFKIPGRR 530
           ++VDE HER ++ D L  ++KD+   RP+L+L++ SATL+A  FS YF  AP   IPG  
Sbjct: 420 VVVDEIHERGMNEDFLLIVLKDLLPRRPDLKLILMSATLNAELFSSYFGGAPAMHIPGFT 479

Query: 531 YPVEINFTKAPEADYLDAA 549
           YPV  +F +    DYL+ +
Sbjct: 480 YPVRAHFLE----DYLETS 494



 Score = 62.8 bits (151), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 2/77 (2%)

Query: 562 PGDILIFLTGQDEIETAEEILKHRTRCLGAKIAELIICPIYGNLPSELQAKIFEPTPEGA 621
           PG +L+F+TG D+I + +  L+  +         L+ C  +G++ S  Q  IF+  PEG 
Sbjct: 578 PGAVLVFMTGWDDINSLKNQLEAHSLLGDPNKVLLLAC--HGSMASSEQRLIFDRPPEGI 635

Query: 622 RKVVLATNIAETSLTID 638
           RK+VLATN+AETS+TI+
Sbjct: 636 RKIVLATNMAETSITIN 652


>AT1G58050.1 | Symbols:  | RNA helicase family protein |
           chr1:21478590-21487839 REVERSE LENGTH=1417
          Length = 1417

 Score =  144 bits (364), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/360 (29%), Positives = 169/360 (46%), Gaps = 77/360 (21%)

Query: 355 PIYSFRDELLQSVHDHQVLVIVGETGSGKTTQIPQYLHE----AGYTKHGMIACTQPXXX 410
           PI   + ++LQ + +  VLV+ GETGSGKTTQ+PQ++ +    +G+  +  I CTQP   
Sbjct: 598 PISEVKKDILQKLKEKDVLVVCGETGSGKTTQVPQFILDDMIDSGHGGYCNIICTQPRAI 657

Query: 411 XXXXXXXXXXKEMGVKLGHEV-GYSIRFEDCTSEKTILKYMTDGMLLREFLGEPELESYS 469
                      E      + V  Y +R ++  S+KT L + T G+LLR+ +G+  L+  +
Sbjct: 658 TVAQRVADERCEPPPGFDNSVVAYQVRHQNARSDKTRLLFCTTGILLRKLVGDTTLKDVT 717

Query: 470 VLMVDEAHERTLSTDILFGLVKDISRHR------PELRLLISSATLDAAKFSDYFDSAPI 523
            ++VDE HER+L  D L  ++K +   +      P+L++++ SAT+DA +FS YF   PI
Sbjct: 718 HIIVDEVHERSLMGDFLLIILKSLIEKQSWDNALPKLKVILMSATVDAHQFSRYFGQCPI 777

Query: 524 FKIPGRRYPVEINF-------------TKAPEADYLDAAIVTSLQIHVNHPPGDILIFLT 570
               GR +PV   F             + +P A   D +I   L   VN P G   + L 
Sbjct: 778 ITAQGRTHPVTTYFLEDIYERTKYLLASDSPAALSSDTSITDKLG-SVNVPRGKKNLMLA 836

Query: 571 G--------QDEIETAEEILKH-RTRCLGAKIAELIIC---------------------- 599
           G        +D + T+ + +K+  +  +   + E +IC                      
Sbjct: 837 GWGDSYLVSEDSLNTSYDSIKYIASAVVDYDLLEELICHIDDTCEEGAILVFLPGMSEIN 896

Query: 600 ---------------------PIYGNLPSELQAKIFEPTPEGARKVVLATNIAETSLTID 638
                                P++ ++ S  Q K+F   P+G RKV++ATNIAETS+TI+
Sbjct: 897 MLLNRLAASYRFRGASGDWLLPLHSSIASTEQKKVFLRPPKGIRKVIIATNIAETSITIE 956


>AT2G30800.1 | Symbols: HVT1, ATVT-1 | helicase in vascular tissue
           and tapetum | chr2:13120585-13126635 REVERSE LENGTH=1299
          Length = 1299

 Score =  142 bits (359), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 69/185 (37%), Positives = 105/185 (56%), Gaps = 6/185 (3%)

Query: 355 PIYSFRDELLQSVHDHQVLVIVGETGSGKTTQIPQYLHEAGYTKH---GMIACTQPXXXX 411
           PI SF+D +  +V  +QV++I GETG GKTTQ+PQYL +  ++       I CTQP    
Sbjct: 188 PITSFKDAITSAVESNQVILISGETGCGKTTQVPQYLLDHMWSSKRETCKIVCTQPRRIS 247

Query: 412 XXXXXXXXXKEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPELESYS-- 469
                     E G  +G  +GY +R +      + + + T+G+LLR  +G+  + S S  
Sbjct: 248 AMSVSERISCERGESIGENIGYKVRLQSKGGRHSSVVFCTNGILLRVLVGKGSVSSVSDI 307

Query: 470 -VLMVDEAHERTLSTDILFGLVKDISRHRPELRLLISSATLDAAKFSDYFDSAPIFKIPG 528
             ++VDE HER   +D +  +++D+    P LRL++ SATLDA +FS YF   P+ ++PG
Sbjct: 308 THIIVDEIHERDCYSDFMLAIIRDLLPSNPHLRLILMSATLDAERFSGYFGGCPVVRVPG 367

Query: 529 RRYPV 533
             YPV
Sbjct: 368 FTYPV 372



 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 50/77 (64%), Gaps = 4/77 (5%)

Query: 563 GDILIFLTGQDEI-ETAEEILKHRTRCLGAKIAELIICPIYGNLPSELQAKIFEPTPEGA 621
           G IL+FL G D+I +T + +L++      AK    IIC ++  +P+  Q K+F   P G 
Sbjct: 552 GAILVFLPGWDDINKTRQRLLENPFFADSAKFD--IIC-LHSMVPAGEQKKVFNRPPPGC 608

Query: 622 RKVVLATNIAETSLTID 638
           RK+VLATNIAE+++TID
Sbjct: 609 RKIVLATNIAESAVTID 625


>AT5G04895.1 | Symbols:  | DEA(D/H)-box RNA helicase family protein
           | chr5:1428796-1434516 FORWARD LENGTH=1161
          Length = 1161

 Score =  141 bits (356), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 75/186 (40%), Positives = 108/186 (58%), Gaps = 6/186 (3%)

Query: 358 SFRDE--LLQSVHDHQVLVIVGETGSGKTTQIPQYLHEA----GYTKHGMIACTQPXXXX 411
           SF+D+  LLQ++  +QV+V+ GETG GKTTQ+PQY+ E+    G      I CTQP    
Sbjct: 262 SFKDKERLLQAIARNQVIVVSGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRIS 321

Query: 412 XXXXXXXXXKEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPELESYSVL 471
                     E G  LG  VG+ +R E    + T L + T G+LLR  L +  L   + +
Sbjct: 322 AMAVSERVSAERGEPLGETVGFKVRLEGMRGKNTHLLFCTSGILLRRLLSDRNLNGVTHV 381

Query: 472 MVDEAHERTLSTDILFGLVKDISRHRPELRLLISSATLDAAKFSDYFDSAPIFKIPGRRY 531
            VDE HER ++ D L  ++K++   RP+LRL++ SATL+A  FS+Y+  AP   IPG  +
Sbjct: 382 FVDEIHERGMNEDFLIIVLKELLPRRPDLRLVLMSATLNAELFSNYYGGAPTIHIPGFTH 441

Query: 532 PVEINF 537
           PV+ +F
Sbjct: 442 PVKAHF 447



 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 54/97 (55%), Gaps = 4/97 (4%)

Query: 544 DYLDAAIVTSLQIHVNHP--PGDILIFLTGQDEIETAEEILKHRTRCLGAKIAELIICPI 601
           D +   ++ ++  H+     PG +L+FLTG D+I +  + +K            L++C  
Sbjct: 519 DCIGFNLIEAVLCHICRKERPGAVLVFLTGWDDIRSLSDQIKAHPLLGDPNRVLLLMC-- 576

Query: 602 YGNLPSELQAKIFEPTPEGARKVVLATNIAETSLTID 638
           +G++ +  Q  IFE  P   RK+VLATN+AE S+TI+
Sbjct: 577 HGSMATAEQRLIFERAPPNIRKIVLATNMAEASITIN 613


>AT1G06670.1 | Symbols: NIH | nuclear DEIH-boxhelicase |
           chr1:2040567-2047333 FORWARD LENGTH=1576
          Length = 1576

 Score =  140 bits (352), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 72/189 (38%), Positives = 107/189 (56%), Gaps = 6/189 (3%)

Query: 355 PIYSFRDELLQSVHDHQVLVIVGETGSGKTTQIPQYL--HEAGYTKHGM-IACTQPXXXX 411
           PI SFRD ++ +V  +QV++I GETG GKTTQ+PQYL  H     K    I CTQP    
Sbjct: 218 PIASFRDAIISAVESNQVVLIAGETGCGKTTQVPQYLLDHMWHSKKEACKIICTQPRRIS 277

Query: 412 XXXXXXXXXKEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGE---PELESY 468
                     E G  +G  VGY +R +     ++ + + T+G+LLR  +G+     +   
Sbjct: 278 AISVSDRISWERGETIGRTVGYKVRLQSEGGRESSVVFCTNGILLRVLIGKGVNSSVPDI 337

Query: 469 SVLMVDEAHERTLSTDILFGLVKDISRHRPELRLLISSATLDAAKFSDYFDSAPIFKIPG 528
           + ++VDE HER   +D +  +++D+    P LRL++ SATLDA +FS+YF   P+ ++PG
Sbjct: 338 THIIVDEIHERDSYSDFMLMILRDLLPSNPHLRLILMSATLDAERFSEYFGGCPVVRVPG 397

Query: 529 RRYPVEINF 537
             YPV   F
Sbjct: 398 FTYPVRTFF 406



 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 59/96 (61%), Gaps = 6/96 (6%)

Query: 546 LDAAIVTSL--QIHVNHPPGDILIFLTGQDEI-ETAEEILKHRTRCLGAKIAELIICPIY 602
           +D  ++  L  +I  +   G IL+FL G +EI +T E++L  R     A  A+ II  ++
Sbjct: 557 VDVGLIVKLMKKICSDSKDGAILVFLPGWEEISKTKEKLLDDR---FFAHSAKFIILCLH 613

Query: 603 GNLPSELQAKIFEPTPEGARKVVLATNIAETSLTID 638
             +P+E Q K+F   P G RK+VLATNIAE+++TID
Sbjct: 614 SRVPAEEQKKVFNRPPRGCRKIVLATNIAESAVTID 649


>AT1G58060.1 | Symbols:  | RNA helicase family protein |
           chr1:21489480-21501775 REVERSE LENGTH=1459
          Length = 1459

 Score =  117 bits (294), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/198 (34%), Positives = 106/198 (53%), Gaps = 16/198 (8%)

Query: 355 PIYSFRDELLQSVHDHQVLVIVGETGSGKTTQIPQYLHE----AGYTKHGMIACTQPXXX 410
           PI   ++ +LQ + +  VLV+ GETGSGKTTQ+PQ++ +    +G+  +  I CTQP   
Sbjct: 615 PISEVKNGILQHLKEKDVLVVCGETGSGKTTQVPQFILDDMIDSGHGGYCNIICTQPRRI 674

Query: 411 XXXXXXXXXXKEM-----GVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPEL 465
                      E      G+     VGY +R E   S+KT L + T G+LLR+  G+  L
Sbjct: 675 AAISVAQRVADERCESSPGLD-DSLVGYQVRLESARSDKTRLLFCTTGILLRKLAGDRTL 733

Query: 466 ESYSVLMVDEAHERTLSTDILFGLVKDISRHRP------ELRLLISSATLDAAKFSDYFD 519
              + ++VDE HER+L  D L  ++K +   +       +L++++ SAT+DA  FS YF 
Sbjct: 734 NDVTHIIVDEVHERSLLGDFLLIILKSLIEKQSCDNTSRKLKVILMSATVDADLFSRYFG 793

Query: 520 SAPIFKIPGRRYPVEINF 537
             P+    GR +PV  +F
Sbjct: 794 HCPVITAQGRTHPVTTHF 811



 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 54/97 (55%), Gaps = 4/97 (4%)

Query: 544 DYLDAAIVTSLQIHVNHPP--GDILIFLTGQDEIETAEEILKHRTRCLGAKIAELIICPI 601
           D +D  ++  L  H++     G ILIFL G  EI    ++L    R  G     L+  P+
Sbjct: 895 DRIDYELLEELICHIDDTCEEGAILIFLPGVAEIYMLLDMLAASYRFRGPAADWLL--PL 952

Query: 602 YGNLPSELQAKIFEPTPEGARKVVLATNIAETSLTID 638
           + ++ S  Q K+F   P+G RKV+ ATNIAETS+TID
Sbjct: 953 HSSIASSEQRKVFLRPPKGLRKVIAATNIAETSITID 989


>AT2G47680.1 | Symbols:  | zinc finger (CCCH type) helicase family
           protein | chr2:19545828-19550871 REVERSE LENGTH=1015
          Length = 1015

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 142/334 (42%), Gaps = 74/334 (22%)

Query: 355 PIYSFRDELLQSVHDHQVLVIVGETGSGKTTQIPQYLHEAGYTKHGMIACTQPXXXXXXX 414
           PI + +  ++  + +++V +IVGE G GK++Q+PQ+L EA       I CTQP       
Sbjct: 27  PIMAMKRRIIDKILENRVTLIVGEPGCGKSSQVPQFLLEANMAP---ILCTQPRRFAVVA 83

Query: 415 XXXXXXKEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFL--GEPELESYSVLM 472
                 K     LG E+GY I      +E + + + T G+LL E L  G   L+ Y V++
Sbjct: 84  VAKMVAKSRNSDLGGEIGYHIGHSKILTEGSKILFKTAGVLLDEMLDKGLNALK-YKVII 142

Query: 473 VDEAHERTLSTDILFGLVKDISRHRPELRLLISSATLDAAKFSDYF------DSAPIFKI 526
           +DE HER++ +D++   VK       +LR+++ SAT D  ++ DYF      +   +  I
Sbjct: 143 LDEVHERSVESDLVLVCVKQFLMKNNDLRVVLMSATADITRYRDYFKELGRGERVEVVAI 202

Query: 527 PG--------RR--YPVEI-----------NFTKAPEADYLDAAIVTSLQ---------I 556
           P         RR  Y  ++            +   P     D  I   LQ         I
Sbjct: 203 PSPDQRTIFQRRVLYLEQVAGLLGVSSDLSAYCPGPSPSSADTEIKPELQNLIHDLILYI 262

Query: 557 HVNHP--PGDILIFLTGQDEIE-----------TAEEILKHRTRCLGAKIAELIICPIYG 603
           H   P     IL+FL     +E           + E  + HR+      +A + IC    
Sbjct: 263 HEKEPDIEKSILVFLPTYYSLEQQYHQLEPFFASFEVHILHRSIDTEQALAAMKIC---- 318

Query: 604 NLPSELQAKIFEPTPEGARKVVLATNIAETSLTI 637
                             RKV+LATNIAE+S+TI
Sbjct: 319 ---------------RSRRKVILATNIAESSVTI 337