Miyakogusa Predicted Gene

Lj1g3v2585650.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2585650.1 tr|B9N4X2|B9N4X2_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_744271 PE=4 SV=1,46.02,7e-16,
,TC77572.path2.1
         (106 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G44250.2 | Symbols:  | Protein of unknown function DUF829, tr...    67   3e-12
AT5G44250.1 | Symbols:  | Protein of unknown function DUF829, tr...    66   4e-12

>AT5G44250.2 | Symbols:  | Protein of unknown function DUF829,
           transmembrane 53 | chr5:17823876-17825153 REVERSE
           LENGTH=302
          Length = 302

 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/101 (41%), Positives = 57/101 (56%), Gaps = 9/101 (8%)

Query: 10  SFQGFALAPSEHL-SHNSMEYYDGKDVSSVADDRKGSFIHLP---SRPSINANGVLGQVL 65
           SF G  L  ++H    +++ YY G+D   V D+ K   I L    +  S+  NGVLGQ+L
Sbjct: 207 SFNGTPLVTTDHFFVPSTVGYYVGRDGGYVQDEHKQDLICLSNTQTNESVKPNGVLGQIL 266

Query: 66  FDVWVPKNVEDWDERSNPGLLAATRRHVPFNPIKCIRRSRL 106
           FDV++PKNVEDWD +     L+ T R       + IRRSRL
Sbjct: 267 FDVYIPKNVEDWDIK-----LSETGRSRRRPGKRFIRRSRL 302


>AT5G44250.1 | Symbols:  | Protein of unknown function DUF829,
           transmembrane 53 | chr5:17823876-17825620 REVERSE
           LENGTH=403
          Length = 403

 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/101 (41%), Positives = 57/101 (56%), Gaps = 9/101 (8%)

Query: 10  SFQGFALAPSEHL-SHNSMEYYDGKDVSSVADDRKGSFIHLP---SRPSINANGVLGQVL 65
           SF G  L  ++H    +++ YY G+D   V D+ K   I L    +  S+  NGVLGQ+L
Sbjct: 308 SFNGTPLVTTDHFFVPSTVGYYVGRDGGYVQDEHKQDLICLSNTQTNESVKPNGVLGQIL 367

Query: 66  FDVWVPKNVEDWDERSNPGLLAATRRHVPFNPIKCIRRSRL 106
           FDV++PKNVEDWD +     L+ T R       + IRRSRL
Sbjct: 368 FDVYIPKNVEDWDIK-----LSETGRSRRRPGKRFIRRSRL 403