Miyakogusa Predicted Gene

Lj1g3v2570510.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2570510.1 Non Chatacterized Hit- tr|G7KZ77|G7KZ77_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,50,1e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.29182.1
         (399 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G48110.1 | Symbols: REF4, MED33B | reduced epidermal fluoresc...   322   3e-88
AT3G23590.1 | Symbols: RFR1, MED33A | REF4-related 1 | chr3:8467...   288   5e-78

>AT2G48110.1 | Symbols: REF4, MED33B | reduced epidermal fluorescence
            4 | chr2:19673370-19679494 FORWARD LENGTH=1275
          Length = 1275

 Score =  322 bits (824), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 176/409 (43%), Positives = 249/409 (60%), Gaps = 18/409 (4%)

Query: 1    MNGIDWPSPAAVLQSVESEIKAILTHVGVDVPKYSSGG-SQVMLPLPMAALVSLSITFKL 59
            MNG DWPSPAA L SVE +I+ IL   GVDVP+  + G S   LPLP+AALVSL+IT+KL
Sbjct: 865  MNGTDWPSPAANLASVEQQIEKILAATGVDVPRLPADGISAATLPLPLAALVSLTITYKL 924

Query: 60   DKSLEYIHAITGAALENCASGCPWPSMPIIGSLWAQKVRRWHNFIVVSGSRSVFRHNNES 119
            DK+ E    + G AL++ A+ CPWP MPI+ SLW QKV+RW +F++ S SR+VF HN ++
Sbjct: 925  DKATERFLVLVGPALDSLAAACPWPCMPIVTSLWTQKVKRWSDFLIFSASRTVFHHNRDA 984

Query: 120  VAQLLRSCFTSYLGTLCVSNSKLTAECNVNGLLGSSITA--PGACPYVAPGFLFLRSCRN 177
            V QLLRSCFT  LG      S+L +   V  LLG    +   G     APG L+++  R+
Sbjct: 985  VIQLLRSCFTCTLG--LTPTSQLCSYGGVGALLGHGFGSRYSGGISTAAPGILYIKVHRS 1042

Query: 178  IHNVLYLNDVLVGLVTEYSNELAGRRAGPG-SRHLKSTG---------ASLSLAAQSAKE 227
            I +V++L + ++ L+      +A R    G +  LK T           SLSLA +  K 
Sbjct: 1043 IRDVMFLTEEILSLLMFSVKSIATRELPAGQAEKLKKTKDGSRYGIGQVSLSLAMRRVKL 1102

Query: 228  VAMLGSCLLCAAGGIQLVQELYKETIPTWLLSSRDTKQNNDSVVSYILEGYAMAYLLIMT 287
             A LG+ L+  +GG+ LVQ L KET+P+W +S    +     +V  +L GYA+AY  I++
Sbjct: 1103 AASLGASLVWISGGLNLVQALIKETLPSWFISVHGEEDELGGMVP-MLRGYALAYFAILS 1161

Query: 288  GSMIWGVGTKLPSSTSTRRNCIIRVHLDFLAEVMERKISISCNPITWKTYVCCLVRLMVS 347
             +  WGV +  P+  S RR  ++ +HL+F+   +E KIS+ C+  TW+ YV   V LMV 
Sbjct: 1162 SAFAWGVDSSYPA--SKRRPRVLWLHLEFMVSALEGKISLGCDWATWQAYVTGFVSLMVQ 1219

Query: 348  LAPAWVQDVKVDTLRKLARGLSRWNEHELALSLLQRGRTAAMGALAELV 396
              PAWV +V V+ +++L++ L +WNE +LAL+LL  G    MGA  EL+
Sbjct: 1220 CTPAWVLEVDVEVIKRLSKSLRQWNEQDLALALLCAGGLGTMGAATELI 1268


>AT3G23590.1 | Symbols: RFR1, MED33A | REF4-related 1 |
            chr3:8467638-8473469 FORWARD LENGTH=1309
          Length = 1309

 Score =  288 bits (737), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 163/412 (39%), Positives = 244/412 (59%), Gaps = 24/412 (5%)

Query: 1    MNGIDWPSPAAVLQSVESEIKAILTHVGVDVPKYSSGGSQ-VMLPLPMAALVSLSITFKL 59
            MNG+DWPSPA  L +VE  I  IL   GVD+P  + GGS    LPLP+AA VSL+IT+K+
Sbjct: 901  MNGVDWPSPATNLSTVEEYITKILATTGVDIPSLAPGGSSPATLPLPLAAFVSLTITYKI 960

Query: 60   DKSLEYIHAITGAALENCASGCPWPSMPIIGSLWAQKVRRWHNFIVVSGSRSVFRHNNES 119
            DK+ E    + G ALE  A+GCPWP MPI+ SLW QK +RW +F+V S SR+VF HN ++
Sbjct: 961  DKASERFLNLAGPALECLAAGCPWPCMPIVASLWTQKAKRWFDFLVFSASRTVFLHNQDA 1020

Query: 120  VAQLLRSCFTSYLGTLCVSNSKLTAECNVNGLLGSSITAP--GACPYVAPGFLFLRSCRN 177
            V QLLR+CF++ LG   ++ + ++ +  V  LLG    +   G    VAPG L+LR  R 
Sbjct: 1021 VIQLLRNCFSATLG---LNAAPMSNDGGVGALLGHGFGSHFYGGISPVAPGILYLRMYRA 1077

Query: 178  IHNVLYLNDVLVGLVTEYSNELAGRRAGP-----------GSRHLKSTGASLSLAAQSAK 226
            + + + +++ ++ L+     ++A  R              GSR+ +S   SL+ A    K
Sbjct: 1078 LRDTVSVSEEILSLLIHSVEDIAQNRLSKEKLEKLKTVKNGSRYGQS---SLATAMTQVK 1134

Query: 227  EVAMLGSCLLCAAGGIQLVQELYKETIPTWLLSSR--DTKQNNDSVVSYILEGYAMAYLL 284
              A L + L+   GG+ +V  L KETIP+W LS+   D +Q    +V+  L G+A+AY +
Sbjct: 1135 LAASLSASLVWLTGGLGVVHVLIKETIPSWFLSTDKSDREQGPSDLVAE-LRGHALAYFV 1193

Query: 285  IMTGSMIWGVGTKLPSSTSTRRNCIIRVHLDFLAEVMERKISISCNPITWKTYVCCLVRL 344
            ++ G++ WGV ++  +S   R+  I+  HL+F+A  ++ KIS+ C   TW+TY+  LV L
Sbjct: 1194 VLCGALTWGVDSRSSASKRRRQ-AILGSHLEFIASALDGKISVGCETATWRTYISGLVSL 1252

Query: 345  MVSLAPAWVQDVKVDTLRKLARGLSRWNEHELALSLLQRGRTAAMGALAELV 396
            MVS  P WV ++  + L+ L+ GL +W + ELA+ LL  G    M   A+ +
Sbjct: 1253 MVSCLPLWVTEIDTEVLKSLSNGLRKWGKDELAIVLLSLGGLKTMDYAADFI 1304