Miyakogusa Predicted Gene

Lj1g3v2546300.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2546300.1 tr|G7KY88|G7KY88_MEDTR RING finger protein
OS=Medicago truncatula GN=MTR_7g074140 PE=4 SV=1,84.51,0,seg,NULL;
RING/U-box,NULL; ZF_RING_1,Zinc finger, RING-type, conserved site;
zf-RING_2,Zinc finger, ,CUFF.29148.1
         (444 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G01960.1 | Symbols:  | RING/U-box superfamily protein | chr5:...   546   e-155
AT1G65040.2 | Symbols:  | RING/U-box superfamily protein | chr1:...    64   2e-10
AT1G65040.3 | Symbols:  | RING/U-box superfamily protein | chr1:...    64   2e-10
AT3G16090.1 | Symbols:  | RING/U-box superfamily protein | chr3:...    63   4e-10
AT1G65040.1 | Symbols:  | RING/U-box superfamily protein | chr1:...    63   5e-10
AT2G42350.1 | Symbols:  | RING/U-box superfamily protein | chr2:...    53   5e-07
AT1G18780.1 | Symbols:  | RING/U-box superfamily protein | chr1:...    51   2e-06
AT2G20030.1 | Symbols:  | RING/U-box superfamily protein | chr2:...    50   2e-06
AT5G05810.1 | Symbols: ATL43 | RING/U-box superfamily protein | ...    50   3e-06
AT2G28920.1 | Symbols:  | RING/U-box superfamily protein | chr2:...    50   4e-06
AT3G13228.1 | Symbols:  | RING/U-box superfamily protein | chr3:...    50   4e-06
AT3G62690.1 | Symbols: ATL5 | AtL5 | chr3:23185829-23186602 REVE...    49   7e-06

>AT5G01960.1 | Symbols:  | RING/U-box superfamily protein |
           chr5:370811-372775 FORWARD LENGTH=426
          Length = 426

 Score =  546 bits (1407), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 279/446 (62%), Positives = 309/446 (69%), Gaps = 35/446 (7%)

Query: 6   DMFRGSPTXXXXXXXXXXXXXXRRFGLLSASNIIQAPLSLLLEYSGILPPR-SNQHQPN- 63
           D FRGSP               RR  +LSASNIIQAP+S LLEYSG+   R S  H+   
Sbjct: 9   DSFRGSP---------------RRNSILSASNIIQAPISTLLEYSGLFRARPSPSHEAET 53

Query: 64  --SDVAAAPSDGEVSIRIIGSAEHDHQRREEQTLSDGD---LAVGNDAVDPSQGGDADXX 118
             SD ++  S+GEV+IRIIG+ E D +         G    L      VDP  G      
Sbjct: 54  LVSDDSSGLSNGEVAIRIIGNTEQDAETDTNALREPGHSELLGSSATQVDPMGGASEGAS 113

Query: 119 XXXXXXXXXXXXXXXXXXXXXXXXXXXXDSSYQRYDIQHAARWIEQXXXXXXXXXXXXIR 178
                                       DS YQRYDIQ AARWIEQ            IR
Sbjct: 114 QAAPGDPAAGDAASR-------------DSPYQRYDIQQAARWIEQILPFSLLLLVVFIR 160

Query: 179 QHLQGFFVTIWIAVVLFKSNDILRKQTALKGERKVPVLIGFSVAFALHVVGVYWWYQNDD 238
           QHLQGFFV IWIA V+FKSNDIL+KQTALKGER +  LIG SVAF  HVVGVYWW++ DD
Sbjct: 161 QHLQGFFVAIWIAAVMFKSNDILKKQTALKGERHISALIGISVAFTAHVVGVYWWFRKDD 220

Query: 239 LMYPLVMLPPKEIPPFWHAIFIIMVNDTLVRQAAMVFKCILLIYYKNSRGRNYRKQGQMX 298
           L+YPL+MLPPK IPPFWHAIFII+VNDTLVRQA+M+FKC LL+YYKNSRGRNYRKQGQ+ 
Sbjct: 221 LLYPLIMLPPKSIPPFWHAIFIIVVNDTLVRQASMIFKCFLLMYYKNSRGRNYRKQGQLL 280

Query: 299 XXXXXXXXXXXXXXXXXXWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAAVK 358
                             WYRFFLNK+YGSLFSSLMTGLYLTFKLTSVVEKVQSFF A+K
Sbjct: 281 TLVEYFMLLYRSLLPTPVWYRFFLNKDYGSLFSSLMTGLYLTFKLTSVVEKVQSFFTALK 340

Query: 359 ALSRKEVHYGAHATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCP 418
           ALSRKEVHYG++AT+EQVNAAGDLCAICQEKMH PILLRCKH+FCEDCVSEWFERERTCP
Sbjct: 341 ALSRKEVHYGSYATTEQVNAAGDLCAICQEKMHTPILLRCKHMFCEDCVSEWFERERTCP 400

Query: 419 LCRALVKPADLRSFGDGSTSLFFQLF 444
           LCRALVKPADL+SFGDGSTSLFFQ+F
Sbjct: 401 LCRALVKPADLKSFGDGSTSLFFQIF 426


>AT1G65040.2 | Symbols:  | RING/U-box superfamily protein |
           chr1:24160105-24163365 REVERSE LENGTH=460
          Length = 460

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 37/58 (63%)

Query: 371 ATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPAD 428
           AT E++++    C IC+E+M +   L C H+F   C+  W ER+ TCP CRALV PA+
Sbjct: 280 ATPEELSSNDATCIICREEMTSAKKLVCGHLFHVHCLRSWLERQNTCPTCRALVVPAE 337


>AT1G65040.3 | Symbols:  | RING/U-box superfamily protein |
           chr1:24160105-24163365 REVERSE LENGTH=389
          Length = 389

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 37/58 (63%)

Query: 371 ATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPAD 428
           AT E++++    C IC+E+M +   L C H+F   C+  W ER+ TCP CRALV PA+
Sbjct: 209 ATPEELSSNDATCIICREEMTSAKKLVCGHLFHVHCLRSWLERQNTCPTCRALVVPAE 266


>AT3G16090.1 | Symbols:  | RING/U-box superfamily protein |
           chr3:5456513-5458694 FORWARD LENGTH=492
          Length = 492

 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 36/58 (62%)

Query: 371 ATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPAD 428
           AT E++ A+   C IC+E+M     L C H+F   C+  W ER++TCP CRALV P +
Sbjct: 280 ATPEELTASDATCIICREEMTNAKKLICGHLFHVHCLRSWLERQQTCPTCRALVVPPE 337


>AT1G65040.1 | Symbols:  | RING/U-box superfamily protein |
           chr1:24160105-24161992 REVERSE LENGTH=281
          Length = 281

 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 37/58 (63%)

Query: 371 ATSEQVNAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPAD 428
           AT E++++    C IC+E+M +   L C H+F   C+  W ER+ TCP CRALV PA+
Sbjct: 101 ATPEELSSNDATCIICREEMTSAKKLVCGHLFHVHCLRSWLERQNTCPTCRALVVPAE 158


>AT2G42350.1 | Symbols:  | RING/U-box superfamily protein |
           chr2:17639245-17639898 FORWARD LENGTH=217
          Length = 217

 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 4/58 (6%)

Query: 377 NAAGDLCAIC----QEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLR 430
           + AG  CA+C    +EK +A +L  CKH+F   CV  W   + TCP+CR   +P+  R
Sbjct: 94  DVAGTECAVCLSLLEEKDNARMLPNCKHVFHVSCVDTWLTTQSTCPVCRTEAEPSHPR 151


>AT1G18780.1 | Symbols:  | RING/U-box superfamily protein |
           chr1:6476258-6477235 REVERSE LENGTH=325
          Length = 325

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 8/86 (9%)

Query: 339 LTFKLTSVVEKVQSFFAAVKALSRKEVHYGAHATSEQVNAAGDLCAICQEKM---HAPIL 395
           ++F  T+ V    +    V AL+RK      +  +  V    D+C IC E+     + + 
Sbjct: 238 VSFNETNTVRLKPASKLTVGALNRK-----TYKKASGVVCENDVCTICLEEFDDGRSIVT 292

Query: 396 LRCKHIFCEDCVSEWFERERTCPLCR 421
           L C H F E+CV EWF R   CPLCR
Sbjct: 293 LPCGHEFDEECVLEWFVRSHVCPLCR 318


>AT2G20030.1 | Symbols:  | RING/U-box superfamily protein |
           chr2:8647813-8648985 FORWARD LENGTH=390
          Length = 390

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 5/62 (8%)

Query: 383 CAICQEKMHAPILLR----CKHIFCEDCVSEWFERERTCPLCRALVK-PADLRSFGDGST 437
           C++C  K     +LR    C+H F   C+ +W E+  TCPLCR  V    DL   G+ ST
Sbjct: 124 CSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRNRVNIEDDLSVLGNSST 183

Query: 438 SL 439
           SL
Sbjct: 184 SL 185


>AT5G05810.1 | Symbols: ATL43 | RING/U-box superfamily protein |
           chr5:1746938-1747999 FORWARD LENGTH=353
          Length = 353

 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 6/65 (9%)

Query: 383 CAICQEKMHAPILLR----CKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTS 438
           CA+C  +     +LR    CKH F  +CV  W +   TCPLCR  V P D+   GD ++ 
Sbjct: 92  CAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLIGDCNS- 150

Query: 439 LFFQL 443
            +F+L
Sbjct: 151 -WFEL 154


>AT2G28920.1 | Symbols:  | RING/U-box superfamily protein |
           chr2:12418017-12418454 FORWARD LENGTH=145
          Length = 145

 Score = 49.7 bits (117), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 4/47 (8%)

Query: 380 GDLCAICQEKMHAP----ILLRCKHIFCEDCVSEWFERERTCPLCRA 422
            D+C IC E         +L+RCKH+F  DC+  W   + TCP+CRA
Sbjct: 90  ADVCVICLEDFKVNDVVRVLVRCKHVFHVDCIDSWCFYKLTCPICRA 136


>AT3G13228.1 | Symbols:  | RING/U-box superfamily protein |
           chr3:4267075-4268052 FORWARD LENGTH=325
          Length = 325

 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 11/69 (15%)

Query: 356 AVKALSRKEVHYGAHATSEQVNAAGDLCAICQEKMHAP---ILLRCKHIFCEDCVSEWFE 412
            VK+L+RK          +++N  G+ C IC E+ +A    + L C H F ++C  +WFE
Sbjct: 256 VVKSLTRK--------IYDKINYTGERCTICLEEFNAGGILVALPCGHDFDDECAVKWFE 307

Query: 413 RERTCPLCR 421
               CPLCR
Sbjct: 308 TNHFCPLCR 316


>AT3G62690.1 | Symbols: ATL5 | AtL5 | chr3:23185829-23186602 REVERSE
           LENGTH=257
          Length = 257

 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 4/49 (8%)

Query: 383 CAIC----QEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPA 427
           C++C    +E     +L +C H+F  DC+  WF    +CPLCRA V+PA
Sbjct: 113 CSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSSCPLCRAPVQPA 161