Miyakogusa Predicted Gene
- Lj1g3v2546210.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v2546210.1 Non Chatacterized Hit- tr|I1L6X0|I1L6X0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.8009 PE=,92.55,0,K
homology RNA-binding domain,K Homology domain; KH_1,K Homology domain,
type 1; RNA-BINDING PROTEIN,CUFF.29135.1
(281 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G38610.2 | Symbols: | RNA-binding KH domain-containing prote... 450 e-127
AT2G38610.1 | Symbols: | RNA-binding KH domain-containing prote... 450 e-127
AT3G08620.1 | Symbols: | RNA-binding KH domain-containing prote... 410 e-115
AT4G26480.1 | Symbols: | RNA-binding KH domain-containing prote... 270 7e-73
AT5G56140.1 | Symbols: | RNA-binding KH domain-containing prote... 268 4e-72
AT1G09660.1 | Symbols: | RNA-binding KH domain-containing prote... 243 1e-64
AT1G09660.2 | Symbols: | RNA-binding KH domain-containing prote... 212 2e-55
AT5G51300.3 | Symbols: | splicing factor-related | chr5:2084988... 102 3e-22
AT5G51300.2 | Symbols: | splicing factor-related | chr5:2084988... 102 3e-22
AT5G51300.1 | Symbols: | splicing factor-related | chr5:2084988... 102 3e-22
>AT2G38610.2 | Symbols: | RNA-binding KH domain-containing protein
| chr2:16147552-16149638 REVERSE LENGTH=286
Length = 286
Score = 450 bits (1158), Expect = e-127, Method: Compositional matrix adjust.
Identities = 225/263 (85%), Positives = 241/263 (91%), Gaps = 6/263 (2%)
Query: 1 MSGLYNPN--YSPARAASPQIRSTPE--DSQYLQELLAEHQKLGPFTQVLPICNRLINQE 56
MSGLYN + +SPARAASPQIRSTPE SQYL ELLAEHQKL PF QVLPIC+RL+NQE
Sbjct: 1 MSGLYNNSSYFSPARAASPQIRSTPEIDSSQYLTELLAEHQKLTPFMQVLPICSRLLNQE 60
Query: 57 ILRVSRMLSNQGFGDFDRLRHRSPSPMASSNIMSNVSGTGLGGWNSLQQEQRFSGPPGMT 116
+ RVS M+SNQGFGDFDRLRHRSPSPMASSN+MSNVS TGLGGWN L QE R SG PGMT
Sbjct: 61 MFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVSNTGLGGWNGLSQE-RLSGTPGMT 119
Query: 117 MDWQGAPASPSSFTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRG 176
MDWQGAP SPSS+TVKRILRLEIPVD YPNFNFVGRLLGPRGNSLKRVEATTGCRV+IRG
Sbjct: 120 MDWQGAPGSPSSYTVKRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRG 179
Query: 177 KGSIKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANVVDVRLRQAQEIIEELLKPVDES 236
KGSIKDP+KE+KLRGRPGYEHLNE LHILIEADLPA++V++RLRQAQEIIEELLKPVDES
Sbjct: 180 KGSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELLKPVDES 239
Query: 237 QDFIKRQQLRELAMLNS-NFREE 258
QDFIKRQQLRELA+LNS N REE
Sbjct: 240 QDFIKRQQLRELALLNSNNLREE 262
>AT2G38610.1 | Symbols: | RNA-binding KH domain-containing protein
| chr2:16147552-16149638 REVERSE LENGTH=286
Length = 286
Score = 450 bits (1158), Expect = e-127, Method: Compositional matrix adjust.
Identities = 225/263 (85%), Positives = 241/263 (91%), Gaps = 6/263 (2%)
Query: 1 MSGLYNPN--YSPARAASPQIRSTPE--DSQYLQELLAEHQKLGPFTQVLPICNRLINQE 56
MSGLYN + +SPARAASPQIRSTPE SQYL ELLAEHQKL PF QVLPIC+RL+NQE
Sbjct: 1 MSGLYNNSSYFSPARAASPQIRSTPEIDSSQYLTELLAEHQKLTPFMQVLPICSRLLNQE 60
Query: 57 ILRVSRMLSNQGFGDFDRLRHRSPSPMASSNIMSNVSGTGLGGWNSLQQEQRFSGPPGMT 116
+ RVS M+SNQGFGDFDRLRHRSPSPMASSN+MSNVS TGLGGWN L QE R SG PGMT
Sbjct: 61 MFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVSNTGLGGWNGLSQE-RLSGTPGMT 119
Query: 117 MDWQGAPASPSSFTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRG 176
MDWQGAP SPSS+TVKRILRLEIPVD YPNFNFVGRLLGPRGNSLKRVEATTGCRV+IRG
Sbjct: 120 MDWQGAPGSPSSYTVKRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRG 179
Query: 177 KGSIKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANVVDVRLRQAQEIIEELLKPVDES 236
KGSIKDP+KE+KLRGRPGYEHLNE LHILIEADLPA++V++RLRQAQEIIEELLKPVDES
Sbjct: 180 KGSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELLKPVDES 239
Query: 237 QDFIKRQQLRELAMLNS-NFREE 258
QDFIKRQQLRELA+LNS N REE
Sbjct: 240 QDFIKRQQLRELALLNSNNLREE 262
>AT3G08620.1 | Symbols: | RNA-binding KH domain-containing protein
| chr3:2617925-2620314 FORWARD LENGTH=283
Length = 283
Score = 410 bits (1053), Expect = e-115, Method: Compositional matrix adjust.
Identities = 215/284 (75%), Positives = 240/284 (84%), Gaps = 4/284 (1%)
Query: 1 MSGLYN-PNYSPARAASPQIR--STPEDSQYLQELLAEHQKLGPFTQVLPICNRLINQEI 57
MSGLYN N+SP+RAASPQIR S+ DSQY+ +LLAEHQKLGPF QVLPIC+RL+NQEI
Sbjct: 1 MSGLYNYNNFSPSRAASPQIRTPSSDVDSQYISQLLAEHQKLGPFMQVLPICSRLLNQEI 60
Query: 58 LRVSRMLSNQGFGDFDRLRHRSPSPMASSNIMSNVSGTGLGGWNSLQQEQRFSGPPGMTM 117
R++ M+ NQGF DFDRLRHRSPSPMAS N+MSNVSG GLGGWN L E R GP GM M
Sbjct: 61 FRITGMMPNQGFTDFDRLRHRSPSPMASPNLMSNVSGGGLGGWNGLPPE-RIGGPHGMAM 119
Query: 118 DWQGAPASPSSFTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 177
+WQGAPASPSS+ VKRILRL++PVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGK
Sbjct: 120 EWQGAPASPSSYPVKRILRLDLPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 179
Query: 178 GSIKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANVVDVRLRQAQEIIEELLKPVDESQ 237
GSIKDP+KEEKL+G+PGYEHLNE LHILIEADLP ++VD++LRQAQEIIEEL+KPVDESQ
Sbjct: 180 GSIKDPEKEEKLKGKPGYEHLNEQLHILIEADLPIDIVDIKLRQAQEIIEELVKPVDESQ 239
Query: 238 DFIKRQQLRELAMLNSNFREEXXXXXXXXXXXXXXXMKRAKPGR 281
D+IKRQQLRELA+LNSN RE MKR K GR
Sbjct: 240 DYIKRQQLRELALLNSNLRENSPGPSGSVSPFNSNAMKRPKTGR 283
>AT4G26480.1 | Symbols: | RNA-binding KH domain-containing protein
| chr4:13372885-13375793 REVERSE LENGTH=308
Length = 308
Score = 270 bits (690), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 146/274 (53%), Positives = 180/274 (65%), Gaps = 10/274 (3%)
Query: 6 NPNYSPARAASPQIRSTPEDSQYLQELLAEHQKLGPFTQVLPICNRLINQEILRVSRMLS 65
+PN+S + P E +YL ELLAE KL PF VLP RL+NQEILRV+ +L
Sbjct: 41 SPNFSGGLRSQPSFLV--EQEKYLSELLAERHKLTPFLPVLPHVCRLMNQEILRVTTLLE 98
Query: 66 NQGFGDFDRLRHRSPSPMASSNIMSNVSGTGLGGWNS-LQQEQRFSGPPGMTMDWQGAPA 124
N + R PSP+AS I N S + GW S E+ S P +W +P
Sbjct: 99 NA----LSQSRFDHPSPLASGGIFQN-SRADMNGWASQFPSERSVSSSPAP--NWLNSPG 151
Query: 125 SPSSFTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPD 184
S S VKR +R++IPVD YPN+NFVGRLLGPRGNSLKRVEA+T CRV IRG+GSIKDP
Sbjct: 152 SSSGLIVKRTIRVDIPVDKYPNYNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPI 211
Query: 185 KEEKLRGRPGYEHLNEPLHILIEADLPANVVDVRLRQAQEIIEELLKPVDESQDFIKRQQ 244
KE+ +RG+PGYEHLNEPLHIL+EA+LP +VD RL QA+EI+++LL PV+E+ DF K+QQ
Sbjct: 212 KEDMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPVEETHDFYKKQQ 271
Query: 245 LRELAMLNSNFREEXXXXXXXXXXXXXXXMKRAK 278
LRELA+LN + REE MKRAK
Sbjct: 272 LRELALLNGSLREEGSPMSGSISPYNSLGMKRAK 305
>AT5G56140.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:22725462-22727932 FORWARD LENGTH=315
Length = 315
Score = 268 bits (684), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 145/273 (53%), Positives = 176/273 (64%), Gaps = 6/273 (2%)
Query: 6 NPNYSPARAASPQIRSTPEDSQYLQELLAEHQKLGPFTQVLPICNRLINQEILRVSRMLS 65
+PNYS + + E +YL ELLAE KL PF VLP RL+NQEILRV+ +L
Sbjct: 45 SPNYSGGLRSQSSVFV--EQEKYLSELLAERHKLTPFLPVLPHAFRLLNQEILRVTTLLE 102
Query: 66 NQGFGDFDRLRHRSPSPMASSNIMSNVSGTGLGGWNSLQQEQRFSGPPGMTMDWQGAPAS 125
N L H PSP+AS I N + GW S +R S P +W +P S
Sbjct: 103 NATVLSQSGLDH--PSPLASGGIFQNARAD-MNGWASQFPSER-SVPSSPGPNWLNSPGS 158
Query: 126 PSSFTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDK 185
S KR +R++IPVD YPNFNFVGRLLGPRGNSLKRVEA+T CRV IRG+GSIKDP K
Sbjct: 159 SSGLIAKRTIRVDIPVDNYPNFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIK 218
Query: 186 EEKLRGRPGYEHLNEPLHILIEADLPANVVDVRLRQAQEIIEELLKPVDESQDFIKRQQL 245
EE +RG+PGYEHLNEPLHIL+EA+LP +VD RL QA+EI+++LL P++E+ D K+QQL
Sbjct: 219 EEMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPMEETHDMYKKQQL 278
Query: 246 RELAMLNSNFREEXXXXXXXXXXXXXXXMKRAK 278
RELA+LN REE MKRAK
Sbjct: 279 RELALLNGTLREEGSPMSGSVSPYNSLGMKRAK 311
>AT1G09660.1 | Symbols: | RNA-binding KH domain-containing protein
| chr1:3128032-3130791 REVERSE LENGTH=298
Length = 298
Score = 243 bits (620), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 134/258 (51%), Positives = 167/258 (64%), Gaps = 25/258 (9%)
Query: 10 SPARAASPQIRSTPEDSQ-YLQELLAEHQKLGPFTQVLPICNRLINQEILRVSRMLSNQG 68
SP R+ P P D + YL ELL E QKLGPF QV+P C RL+N EI RVS
Sbjct: 31 SPNRSPCP-----PSDRERYLTELLQERQKLGPFLQVMPNCCRLLNHEIRRVS------S 79
Query: 69 FGDFDRLRHRSPSPMASSNIMSNVSGTGLGGWNSLQQEQR--------FSGPPGMTMDWQ 120
F D DR H SP S +N L GW+ +Q E+ F GP + W
Sbjct: 80 FPDLDRYEHGSP--FRSLGQPTN-GKLDLEGWSMMQAEENCHLQRASPFRGP--SPVGWI 134
Query: 121 GAPASPSSFTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSI 180
G P P+ VK+++RL++PVD YP++NFVGR+LGPRGNSLKRVE T CRV+IRG+GS+
Sbjct: 135 GMPGLPNPPIVKKVIRLDVPVDKYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGRGSV 194
Query: 181 KDPDKEEKLRGRPGYEHLNEPLHILIEADLPANVVDVRLRQAQEIIEELLKPVDESQDFI 240
KD KEEKL+G+PGYEHL EPLH+LIEA+LP ++++ RL A +E LLKP+DES D
Sbjct: 195 KDTVKEEKLKGKPGYEHLCEPLHVLIEAELPEDIINSRLEHAVHFLESLLKPMDESMDHY 254
Query: 241 KRQQLRELAMLNSNFREE 258
KR+QL+ELA LN REE
Sbjct: 255 KREQLKELAALNGTLREE 272
>AT1G09660.2 | Symbols: | RNA-binding KH domain-containing protein
| chr1:3128205-3130791 REVERSE LENGTH=264
Length = 264
Score = 212 bits (540), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 119/236 (50%), Positives = 150/236 (63%), Gaps = 25/236 (10%)
Query: 10 SPARAASPQIRSTPEDSQ-YLQELLAEHQKLGPFTQVLPICNRLINQEILRVSRMLSNQG 68
SP R+ P P D + YL ELL E QKLGPF QV+P C RL+N EI RVS
Sbjct: 31 SPNRSPCP-----PSDRERYLTELLQERQKLGPFLQVMPNCCRLLNHEIRRVS------S 79
Query: 69 FGDFDRLRHRSPSPMASSNIMSNVSGTGLGGWNSLQQEQR--------FSGPPGMTMDWQ 120
F D DR H SP S +N L GW+ +Q E+ F GP + W
Sbjct: 80 FPDLDRYEHGSP--FRSLGQPTN-GKLDLEGWSMMQAEENCHLQRASPFRGP--SPVGWI 134
Query: 121 GAPASPSSFTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSI 180
G P P+ VK+++RL++PVD YP++NFVGR+LGPRGNSLKRVE T CRV+IRG+GS+
Sbjct: 135 GMPGLPNPPIVKKVIRLDVPVDKYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGRGSV 194
Query: 181 KDPDKEEKLRGRPGYEHLNEPLHILIEADLPANVVDVRLRQAQEIIEELLKPVDES 236
KD KEEKL+G+PGYEHL EPLH+LIEA+LP ++++ RL A +E LLKP+ S
Sbjct: 195 KDTVKEEKLKGKPGYEHLCEPLHVLIEAELPEDIINSRLEHAVHFLESLLKPMVHS 250
>AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 81/125 (64%), Gaps = 10/125 (8%)
Query: 136 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEK--LRGRP 193
+L IP+ +P +NF+G ++GPRGN+ KR+E TG ++ IRGKGS+K+ ++K L+ P
Sbjct: 244 KLFIPMKEFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRHQQKKDLKYDP 303
Query: 194 GYEHLNEPLHILIEADLPANVVDVRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLNS 253
NE LH+L+EA+ L A ++E+LL+PVDE + KRQQLRELA LN
Sbjct: 304 SE---NEDLHVLVEAE-----TQEALEAAAGMVEKLLQPVDEVLNEHKRQQLRELATLNG 355
Query: 254 NFREE 258
R+E
Sbjct: 356 TIRDE 360
>AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 81/125 (64%), Gaps = 10/125 (8%)
Query: 136 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEK--LRGRP 193
+L IP+ +P +NF+G ++GPRGN+ KR+E TG ++ IRGKGS+K+ ++K L+ P
Sbjct: 244 KLFIPMKEFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRHQQKKDLKYDP 303
Query: 194 GYEHLNEPLHILIEADLPANVVDVRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLNS 253
NE LH+L+EA+ L A ++E+LL+PVDE + KRQQLRELA LN
Sbjct: 304 SE---NEDLHVLVEAE-----TQEALEAAAGMVEKLLQPVDEVLNEHKRQQLRELATLNG 355
Query: 254 NFREE 258
R+E
Sbjct: 356 TIRDE 360
>AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 81/125 (64%), Gaps = 10/125 (8%)
Query: 136 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEK--LRGRP 193
+L IP+ +P +NF+G ++GPRGN+ KR+E TG ++ IRGKGS+K+ ++K L+ P
Sbjct: 244 KLFIPMKEFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRHQQKKDLKYDP 303
Query: 194 GYEHLNEPLHILIEADLPANVVDVRLRQAQEIIEELLKPVDESQDFIKRQQLRELAMLNS 253
NE LH+L+EA+ L A ++E+LL+PVDE + KRQQLRELA LN
Sbjct: 304 SE---NEDLHVLVEAE-----TQEALEAAAGMVEKLLQPVDEVLNEHKRQQLRELATLNG 355
Query: 254 NFREE 258
R+E
Sbjct: 356 TIRDE 360