Miyakogusa Predicted Gene

Lj1g3v2536150.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2536150.1 Non Chatacterized Hit- tr|I1L6X3|I1L6X3_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,83.54,0,PPR:
pentatricopeptide repeat domain,Pentatricopeptide repeat;
PPR,Pentatricopeptide repeat; PENTATR,CUFF.29122.1
         (707 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G56690.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   931   0.0  
AT1G09410.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   888   0.0  
AT4G02750.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   702   0.0  
AT4G16835.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   519   e-147
AT2G22070.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   474   e-133
AT5G46460.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   467   e-131
AT5G09950.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   459   e-129
AT4G33990.1 | Symbols: EMB2758 | Tetratricopeptide repeat (TPR)-...   450   e-126
AT4G30700.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   443   e-124
AT1G20230.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   441   e-124
AT5G16860.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   438   e-123
AT3G02010.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   438   e-123
AT2G27610.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   437   e-123
AT4G18750.1 | Symbols: DOT4 | Pentatricopeptide repeat (PPR) sup...   434   e-121
AT1G25360.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   432   e-121
AT1G68930.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   429   e-120
AT3G26782.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   425   e-119
AT2G29760.1 | Symbols: OTP81 | Tetratricopeptide repeat (TPR)-li...   424   e-118
AT1G11290.1 | Symbols: CRR22 | Pentatricopeptide repeat (PPR) su...   422   e-118
AT3G03580.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   418   e-117
AT1G08070.1 | Symbols: OTP82 | Tetratricopeptide repeat (TPR)-li...   417   e-116
AT3G12770.1 | Symbols: MEF22 | mitochondrial editing factor  22 ...   415   e-116
AT3G49142.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   415   e-116
AT4G13650.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   412   e-115
AT4G33170.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   407   e-113
AT4G37380.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   406   e-113
AT2G03880.1 | Symbols: REME1 | Pentatricopeptide repeat (PPR) su...   406   e-113
AT3G22690.2 | Symbols:  | INVOLVED IN: photosystem II assembly, ...   403   e-112
AT3G08820.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   402   e-112
AT4G37170.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   402   e-112
AT1G62260.1 | Symbols: MEF9 | mitochondrial editing factor 9 | c...   401   e-111
AT3G24000.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   400   e-111
AT1G16480.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   399   e-111
AT3G22690.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Protein of...   399   e-111
AT4G14820.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   395   e-110
AT2G35030.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   395   e-110
AT3G13770.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   394   e-109
AT3G57430.1 | Symbols: OTP84 | Tetratricopeptide repeat (TPR)-li...   393   e-109
AT4G21065.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   392   e-109
AT4G01030.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   392   e-109
AT4G14850.1 | Symbols: LOI1, MEF11 | Pentatricopeptide repeat (P...   392   e-109
AT4G14050.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   391   e-109
AT5G04780.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   390   e-108
AT3G49710.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   390   e-108
AT1G18485.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   389   e-108
AT5G39680.1 | Symbols: EMB2744 | Pentatricopeptide repeat (PPR) ...   387   e-107
AT4G21065.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   387   e-107
AT3G46790.1 | Symbols: CRR2 | Tetratricopeptide repeat (TPR)-lik...   384   e-106
AT5G13230.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   382   e-106
AT3G14330.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   382   e-106
AT3G49170.1 | Symbols: EMB2261 | Tetratricopeptide repeat (TPR)-...   381   e-106
AT1G16480.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   380   e-105
AT1G53600.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   379   e-105
AT3G23330.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   375   e-104
AT1G74630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   375   e-104
AT5G40405.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   375   e-104
AT3G15130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   373   e-103
AT2G13600.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   373   e-103
AT5G65570.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   372   e-103
AT1G15510.1 | Symbols: ATECB2, ECB2, VAC1 | Tetratricopeptide re...   371   e-102
AT5G06540.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   370   e-102
AT5G48910.1 | Symbols: LPA66 | Pentatricopeptide repeat (PPR) su...   369   e-102
AT3G62890.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   369   e-102
AT3G11460.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   367   e-101
AT4G35130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   365   e-101
AT2G02980.1 | Symbols: OTP85 | Pentatricopeptide repeat (PPR) su...   364   e-100
AT1G04840.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   363   e-100
AT2G01510.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   363   e-100
AT5G40410.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   360   2e-99
AT1G32415.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   358   1e-98
AT5G66520.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   353   2e-97
AT3G61170.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   352   7e-97
AT5G50390.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   350   1e-96
AT2G41080.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   350   2e-96
AT1G31920.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   348   6e-96
AT1G71420.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   348   7e-96
AT5G52630.1 | Symbols: MEF1 | mitochondrial RNAediting factor 1 ...   344   2e-94
AT2G33760.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   342   4e-94
AT3G56550.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   342   8e-94
AT5G44230.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   341   1e-93
AT5G15340.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   339   3e-93
AT1G59720.1 | Symbols: CRR28 | Tetratricopeptide repeat (TPR)-li...   337   1e-92
AT5G50990.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   335   8e-92
AT5G13270.1 | Symbols: RARE1 | Pentatricopeptide repeat (PPR) su...   333   2e-91
AT1G77010.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   332   8e-91
AT1G34160.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   327   2e-89
AT2G45350.1 | Symbols: CRR4 | Pentatricopeptide repeat (PPR) sup...   325   8e-89
AT3G29230.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   320   3e-87
AT4G15720.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   318   9e-87
AT3G47530.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   318   1e-86
AT4G21300.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   317   2e-86
AT3G09040.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   316   3e-86
AT1G19720.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   315   8e-86
AT5G03800.1 | Symbols: EMB175, emb1899, EMB166 | Pentatricopepti...   308   7e-84
AT1G13410.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   307   1e-83
AT3G15930.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   298   6e-81
AT1G17630.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   297   2e-80
AT2G33680.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   296   3e-80
AT3G53360.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   295   9e-80
AT2G21090.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   295   9e-80
AT1G06150.1 | Symbols: EMB1444 | basic helix-loop-helix (bHLH) D...   294   2e-79
AT3G63370.1 | Symbols: OTP86 | Tetratricopeptide repeat (TPR)-li...   293   2e-79
AT3G05340.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   292   4e-79
AT2G37310.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   292   6e-79
AT5G39350.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   292   7e-79
AT4G39530.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   291   1e-78
AT5G55740.1 | Symbols: CRR21 | Tetratricopeptide repeat (TPR)-li...   286   4e-77
AT1G56570.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   286   4e-77
AT5G37570.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   282   6e-76
AT5G19020.1 | Symbols: MEF18 | mitochondrial editing factor  18 ...   282   7e-76
AT3G14730.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   281   1e-75
AT4G19191.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   278   9e-75
AT4G22760.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   278   1e-74
AT2G36980.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   277   2e-74
AT3G25970.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   276   3e-74
AT2G44880.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   276   3e-74
AT3G47840.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   276   4e-74
AT1G05750.1 | Symbols: PDE247, CLB19 | Tetratricopeptide repeat ...   274   1e-73
AT3G22150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   274   2e-73
AT3G01580.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   273   3e-73
AT1G69350.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   269   4e-72
AT4G04370.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   269   6e-72
AT3G21470.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   269   6e-72
AT3G04750.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   268   1e-71
AT1G33350.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   267   1e-71
AT3G16610.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   267   2e-71
AT5G59200.1 | Symbols: OTP80 | Tetratricopeptide repeat (TPR)-li...   266   3e-71
AT2G03380.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   266   5e-71
AT5G15300.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   264   2e-70
AT2G34400.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   264   2e-70
AT5G59600.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   264   2e-70
AT2G20540.1 | Symbols: MEF21 | mitochondrial editing factor  21 ...   263   2e-70
AT5G08490.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   263   4e-70
AT4G20770.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   262   6e-70
AT4G31070.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   262   6e-70
AT5G52850.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   261   9e-70
AT1G50270.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   260   2e-69
AT5G27110.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   260   3e-69
AT4G32430.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   260   3e-69
AT2G04860.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   260   3e-69
AT3G25060.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   259   6e-69
AT1G06140.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   258   1e-68
AT1G28690.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   257   2e-68
AT2G22410.1 | Symbols: SLO1 | SLOW GROWTH 1 | chr2:9509035-95110...   257   2e-68
AT3G50420.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   256   4e-68
AT3G18840.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   255   6e-68
AT3G02330.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   255   6e-68
AT5G56310.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   254   1e-67
AT4G08210.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   253   2e-67
AT2G02750.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   252   7e-67
AT3G13880.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   251   1e-66
AT4G18840.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   249   4e-66
AT1G03540.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   246   3e-65
AT3G05240.1 | Symbols: MEF19 | mitochondrial editing factor  19 ...   246   4e-65
AT2G42920.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   246   4e-65
AT2G40720.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   246   5e-65
AT1G09190.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   244   1e-64
AT1G31430.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   244   2e-64
AT1G74600.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   242   6e-64
AT5G08510.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   239   4e-63
AT4G39952.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   239   5e-63
AT2G37320.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   238   1e-62
AT1G71490.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   234   2e-61
AT5G42450.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   234   2e-61
AT1G43980.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   233   4e-61
AT4G16470.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   229   5e-60
AT5G43790.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   229   7e-60
AT1G03510.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   226   3e-59
AT2G15690.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   226   4e-59
AT2G17210.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   225   7e-59
AT1G77170.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   223   3e-58
AT5G08305.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   223   3e-58
AT2G39620.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   223   3e-58
AT4G38010.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   221   1e-57
AT3G26540.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   221   1e-57
AT1G74400.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   220   3e-57
AT1G64310.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   219   5e-57
AT5G66500.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   219   7e-57
AT3G20730.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   218   1e-56
AT4G19220.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   216   5e-56
AT2G25580.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   215   7e-56
AT1G26900.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   213   4e-55
AT3G49740.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   211   1e-54
AT1G14470.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   210   3e-54
AT2G46050.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   209   6e-54
AT4G25270.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   207   3e-53
AT5G61800.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   206   3e-53
AT4G32450.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   204   2e-52
AT5G47460.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   203   4e-52
AT1G22830.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   202   9e-52
AT1G22830.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   202   9e-52
AT1G10330.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   200   3e-51
AT1G09220.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   199   4e-51
AT3G28640.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   198   1e-50
AT3G28660.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   197   3e-50
AT3G51320.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   191   1e-48
AT3G18970.1 | Symbols: MEF20 | mitochondrial editing factor  20 ...   185   8e-47
AT4G14170.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   184   2e-46
AT2G36730.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   184   2e-46
AT1G23450.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   181   2e-45
AT3G58590.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   177   2e-44
AT4G18520.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   173   3e-43
AT1G29710.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   169   7e-42
AT3G26630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   166   5e-41
AT1G71460.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   162   1e-39
AT2G34370.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   159   8e-39
AT1G47580.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   145   8e-35
AT1G62930.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   129   8e-30
AT5G39710.1 | Symbols: EMB2745 | Tetratricopeptide repeat (TPR)-...   125   8e-29
AT5G55840.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   124   2e-28
AT1G63400.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   122   7e-28
AT1G09900.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   122   8e-28
AT1G63080.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   121   1e-27
AT5G57250.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   121   2e-27
AT5G65560.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   120   2e-27
AT1G63130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   119   6e-27
AT1G62670.1 | Symbols: RPF2 | rna processing factor 2 | chr1:232...   119   8e-27
AT3G22470.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   118   1e-26
AT5G01110.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   116   4e-26
AT1G12300.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   115   7e-26
AT1G62910.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   114   2e-25
AT5G16640.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   114   2e-25
AT1G64100.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   114   2e-25
AT1G62720.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   114   2e-25
AT1G64100.2 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   114   3e-25
AT5G61990.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   114   3e-25
AT1G06710.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   113   6e-25
AT1G63150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   113   6e-25
AT5G41170.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   111   1e-24
AT3G16710.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   111   2e-24
AT1G62590.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   111   2e-24
AT1G31840.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   111   2e-24
AT3G53700.1 | Symbols: MEE40 | Pentatricopeptide repeat (PPR) su...   110   2e-24
AT1G63330.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   109   7e-24
AT5G64320.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   108   9e-24
AT1G12775.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   108   1e-23
AT3G06920.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   108   1e-23
AT1G63230.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   108   2e-23
AT1G62680.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   107   2e-23
AT1G05670.2 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   107   3e-23
AT1G05670.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   107   3e-23
AT2G16880.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   107   3e-23
AT4G28010.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   107   4e-23
AT1G12700.1 | Symbols:  | ATP binding;nucleic acid binding;helic...   106   7e-23
AT1G64580.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   104   2e-22
AT1G12620.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   104   2e-22
AT1G19290.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   104   3e-22
AT2G01740.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   103   4e-22
AT1G74580.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   103   5e-22
AT3G54980.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   102   1e-21
AT1G03560.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   101   2e-21
AT1G64583.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   100   3e-21
AT5G59900.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   100   5e-21
AT5G04810.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   100   6e-21
AT4G11690.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   100   6e-21
AT1G22960.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    99   7e-21
AT4G19890.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    98   2e-20
AT1G09680.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    98   2e-20
AT4G26800.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    98   2e-20
AT1G13800.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    98   2e-20
AT4G31850.1 | Symbols: PGR3 | proton gradient regulation 3 | chr...    98   2e-20
AT1G31840.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    97   3e-20
AT2G32630.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    97   4e-20
AT1G63070.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    97   6e-20
AT2G17140.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    96   7e-20
AT2G39230.1 | Symbols: LOJ | LATERAL ORGAN JUNCTION | chr2:16381...    96   7e-20
AT4G19440.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    96   9e-20
AT4G19440.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    96   9e-20
AT1G63630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    95   2e-19
AT2G06000.2 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    94   2e-19
AT2G06000.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    94   2e-19
AT2G18940.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    94   3e-19
AT1G09820.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    94   4e-19
AT5G12100.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    93   5e-19
AT5G61400.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    93   6e-19
AT3G09060.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    93   6e-19
AT1G13040.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    92   1e-18
AT1G74850.1 | Symbols: PTAC2 | plastid transcriptionally active ...    92   1e-18
AT1G62914.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    91   3e-18
AT1G79540.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    90   5e-18
AT3G23020.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    90   5e-18
AT5G39980.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    90   5e-18
AT5G16420.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    90   6e-18
AT2G02150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    89   8e-18
AT2G17525.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    89   8e-18
AT2G31400.1 | Symbols: GUN1 | genomes uncoupled 1 | chr2:1338720...    89   9e-18
AT3G48810.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    89   1e-17
AT3G13160.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    89   2e-17
AT4G20090.1 | Symbols: EMB1025 | Pentatricopeptide repeat (PPR) ...    88   2e-17
AT1G52620.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    88   2e-17
AT2G35130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    87   3e-17
AT2G35130.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    87   3e-17
AT3G16010.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    87   3e-17
AT5G02860.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    87   3e-17
AT5G42310.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    87   6e-17
AT3G59040.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    86   9e-17
AT3G59040.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    86   1e-16
AT3G04760.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    85   2e-16
AT5G14770.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    84   4e-16
AT3G07290.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    84   4e-16
AT2G26790.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    84   5e-16
AT2G15630.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    83   5e-16
AT2G37230.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    82   1e-15
AT1G02060.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    82   1e-15
AT3G62470.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    82   2e-15
AT5G27270.1 | Symbols: EMB976 | Tetratricopeptide repeat (TPR)-l...    82   2e-15
AT5G38730.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    81   2e-15
AT1G73710.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    80   4e-15
AT1G13630.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    80   5e-15
AT1G13630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    80   6e-15
AT2G41720.2 | Symbols: EMB2654 | Tetratricopeptide repeat (TPR)-...    80   7e-15
AT1G55890.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    79   1e-14
AT3G62540.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    79   1e-14
AT5G14820.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    79   1e-14
AT3G13150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    78   2e-14
AT4G01570.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    78   2e-14
AT2G41720.1 | Symbols: EMB2654 | Tetratricopeptide repeat (TPR)-...    78   2e-14
AT5G40400.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    77   3e-14
AT1G74900.1 | Symbols: OTP43 | Pentatricopeptide repeat (PPR) su...    77   3e-14
AT1G77340.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    77   4e-14
AT5G46100.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    77   4e-14
AT5G62370.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    76   8e-14
AT1G30290.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    76   1e-13
AT5G46680.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    76   1e-13
AT1G79080.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    75   1e-13
AT4G16390.1 | Symbols: SVR7 | pentatricopeptide (PPR) repeat-con...    75   2e-13
AT5G18475.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    74   4e-13
AT4G01400.3 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    73   9e-13
AT1G07740.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    72   9e-13
AT3G49730.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    72   1e-12
AT1G51965.1 | Symbols: ABO5 | ABA Overly-Sensitive 5 | chr1:1931...    72   1e-12
AT3G22670.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    72   1e-12
AT4G39620.2 | Symbols: EMB2453 | Tetratricopeptide repeat (TPR)-...    72   1e-12
AT2G19280.2 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    72   1e-12
AT2G19280.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    72   1e-12
AT1G11710.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    72   2e-12
AT4G39620.1 | Symbols: EMB2453, ATPPR5 | Tetratricopeptide repea...    72   2e-12
AT1G06580.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    71   2e-12
AT5G46580.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    71   3e-12
AT5G21222.1 | Symbols:  | protein kinase family protein | chr5:7...    71   3e-12
AT1G20300.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    70   4e-12
AT4G26680.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    70   6e-12
AT4G26680.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    70   6e-12
AT1G74750.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    69   1e-11
AT1G63630.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    69   1e-11
AT5G43820.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    69   2e-11
AT3G18110.1 | Symbols: EMB1270 | Pentatricopeptide repeat (PPR) ...    68   2e-11
AT5G25630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    68   2e-11
AT5G24830.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    67   5e-11
AT5G47360.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    66   7e-11
AT1G10910.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    66   8e-11
AT1G18900.3 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    65   1e-10
AT1G18900.2 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    65   1e-10
AT1G18900.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    65   1e-10
AT5G28460.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    65   2e-10
AT3G61520.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    65   2e-10
AT1G26500.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    65   2e-10
AT1G77150.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    65   2e-10
AT1G16830.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    65   2e-10
AT5G28370.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    64   3e-10
AT1G63320.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    64   4e-10
AT5G65820.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    64   5e-10
AT3G09650.1 | Symbols: HCF152, CRM3 | Tetratricopeptide repeat (...    63   8e-10
AT2G18520.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    62   1e-09
AT2G17670.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    62   1e-09
AT4G30825.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    62   2e-09
AT5G11310.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    61   2e-09
AT1G77360.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    61   2e-09
AT4G20740.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    61   3e-09
AT1G31790.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    60   4e-09
AT3G16890.1 | Symbols: PPR40 | pentatricopeptide (PPR) domain pr...    60   7e-09
AT1G53330.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    59   9e-09
AT5G25630.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    59   1e-08
AT3G18020.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    59   1e-08
AT2G36240.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    59   1e-08
AT1G08610.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    59   1e-08
AT5G18950.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    59   2e-08
AT1G77405.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    58   2e-08
AT1G52640.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    58   2e-08
AT3G14580.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    58   3e-08
AT2G15980.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    57   5e-08
AT3G49240.1 | Symbols: emb1796 | Pentatricopeptide repeat (PPR) ...    57   6e-08
AT1G66345.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    57   6e-08
AT1G71060.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    57   6e-08
AT1G11900.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    56   7e-08
AT5G08310.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    56   9e-08
AT1G55630.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    56   1e-07
AT3G60050.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    56   1e-07
AT4G34830.1 | Symbols: MRL1 | Pentatricopeptide repeat (PPR) sup...    55   2e-07
AT1G79490.1 | Symbols: EMB2217 | Pentatricopeptide repeat (PPR) ...    55   2e-07
AT4G01400.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    55   2e-07
AT3G02650.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    53   6e-07
AT5G15010.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    53   6e-07
AT5G61370.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    53   7e-07
AT1G19520.1 | Symbols: NFD5 | pentatricopeptide (PPR) repeat-con...    53   7e-07
AT1G61870.1 | Symbols: PPR336 | pentatricopeptide repeat 336 | c...    53   8e-07
AT2G28050.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    52   1e-06
AT3G29290.1 | Symbols: emb2076 | Pentatricopeptide repeat (PPR) ...    52   1e-06
AT3G04130.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    52   2e-06
AT3G04130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    52   2e-06
AT5G50280.1 | Symbols: EMB1006 | Pentatricopeptide repeat (PPR) ...    52   2e-06
AT5G14080.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    51   2e-06
AT3G17370.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    51   2e-06
AT1G11630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    50   5e-06
AT4G38150.2 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    50   7e-06
AT4G38150.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    50   7e-06
AT1G10270.1 | Symbols: GRP23 | glutamine-rich protein 23 | chr1:...    50   7e-06

>AT1G56690.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:21253817-21255931 FORWARD
           LENGTH=704
          Length = 704

 Score =  931 bits (2406), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/704 (61%), Positives = 549/704 (77%), Gaps = 7/704 (0%)

Query: 9   RVCMVQVRFQCTSTGA-----ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQ 63
           R+ ++  R   TSTG      ISR +RIG+I  ARK FD      +   SWN++V+ YF 
Sbjct: 3   RLKLILRRTYLTSTGVNCSFEISRLSRIGKINEARKFFDSLQF--KAIGSWNSIVSGYFS 60

Query: 64  AHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGY 123
              P +A  LF+   E+N+VSWNG+VSG++KN M+ EAR VF+ MP RNVVSWT+MV+GY
Sbjct: 61  NGLPKEARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGY 120

Query: 124 VQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIG 183
           +QEG V EAE LFWRMPE+N VSWTVM GGL+ D R++ ARKL+DMMPVKDVVA TNMIG
Sbjct: 121 MQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIG 180

Query: 184 GYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAM 243
           G C EGR++EAR +FDEM +RNVVTWTTM++GY +N RVDVARKLFEVMPE+ EVSWT+M
Sbjct: 181 GLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSM 240

Query: 244 LMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWS 303
           L+GYT SGR+ +A EFF+ MP+KPV+ACN MI+GFG  G++ +A+ VF+ M +RD+ TW 
Sbjct: 241 LLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWR 300

Query: 304 AMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRS 363
            MIK YERKGFELEAL LFA+MQ++G   +FP                +GRQVHA LVR 
Sbjct: 301 GMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRC 360

Query: 364 EFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVF 423
           +FD D+YVAS L+TMYVKCG+LV+AK +F+R+  KD++MWNS+I+GY+ HGLGEEAL +F
Sbjct: 361 QFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIF 420

Query: 424 RDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGR 483
            +M  SG  P+ ++ I +L+ACSY+GK++EG EIFESM+ K+ V P +EHY+C VD+LGR
Sbjct: 421 HEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGR 480

Query: 484 AGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLL 543
           AGQV+ A+E++E M ++PDA VWG+LLGAC+TH +LDLAEVA +KL + EP NAG YVLL
Sbjct: 481 AGQVDKAMELIESMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVLL 540

Query: 544 SHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKM 603
           S + AS+ +W DV VVR+ ++T +V K PG SWIEV KK HMF  G    HPEQ +I+ M
Sbjct: 541 SSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKNHPEQAMILMM 600

Query: 604 LERLDGLLRDAGYSPDHSFVLHDVEEEEKTHSLGYHSEKLAIAYGLLKVPEGMPIRVMKN 663
           LE+ DGLLR+AGYSPD S VLHDV+EEEK  SL  HSE+LA+AYGLLK+PEG+PIRVMKN
Sbjct: 601 LEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPIRVMKN 660

Query: 664 LRVCGDCHSAIKLIAKVTGREIIVRDANRFHHFKDGYCSCKDYW 707
           LRVCGDCH+AIKLI+KVT REII+RDANRFHHF +G CSC+DYW
Sbjct: 661 LRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDYW 704


>AT1G09410.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:3035443-3037560 FORWARD LENGTH=705
          Length = 705

 Score =  888 bits (2295), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/689 (59%), Positives = 536/689 (77%), Gaps = 3/689 (0%)

Query: 20  TSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPE 79
           T+   I+  +RIG+I  ARK+FD      ++ SSWN+MVA YF    P  A  LF+  P+
Sbjct: 19  TANVRITHLSRIGKIHEARKLFDSCDS--KSISSWNSMVAGYFANLMPRDARKLFDEMPD 76

Query: 80  KNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM 139
           +NI+SWNG+VSG++KNG + EAR+VFD MP RNVVSWT++V+GYV  G V+ AE LFW+M
Sbjct: 77  RNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKM 136

Query: 140 PEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFD 199
           PEKN VSWTVML G L+D R++DA KL++M+P KD +A T+MI G C+EGR++EAR +FD
Sbjct: 137 PEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFD 196

Query: 200 EMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEF 259
           EM +R+V+TWTTMV+GY +N RVD ARK+F+VMPE+ EVSWT+MLMGY  +GR+ +A E 
Sbjct: 197 EMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEEL 256

Query: 260 FDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEAL 319
           F+ MPVKPV+ACN MI G G  G++ +A+ VF+ M+ER+D +W  +IK++ER GFELEAL
Sbjct: 257 FEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEAL 316

Query: 320 GLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMY 379
            LF  MQ++G    FP                HG+QVHA+LVR +FD D+YVAS L+TMY
Sbjct: 317 DLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMY 376

Query: 380 VKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSG-VPPDDISF 438
           +KCG+LV++K IF+R+P KD++MWNS+I+GY+ HGLGEEAL VF +M LSG   P++++F
Sbjct: 377 IKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTF 436

Query: 439 IGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMP 498
           +  LSACSY+G V+EG +I+ESM+  + V+P   HYACMVD+LGRAG+ N+A+E+++ M 
Sbjct: 437 VATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMT 496

Query: 499 MEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEV 558
           +EPDA VWGSLLGACRTH +LD+AE   +KL ++EP+N+G Y+LLS+MYAS+GRW DV  
Sbjct: 497 VEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAE 556

Query: 559 VREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSP 618
           +R+ +KTR V K PG SW EVE K H F  G  N HPEQ  I+K+L+ LDGLLR+AGY+P
Sbjct: 557 LRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKILDELDGLLREAGYNP 616

Query: 619 DHSFVLHDVEEEEKTHSLGYHSEKLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIA 678
           D S+ LHDV+EEEK +SL YHSE+LA+AY LLK+ EG+PIRVMKNLRVC DCH+AIK+I+
Sbjct: 617 DCSYALHDVDEEEKVNSLKYHSERLAVAYALLKLSEGIPIRVMKNLRVCSDCHTAIKIIS 676

Query: 679 KVTGREIIVRDANRFHHFKDGYCSCKDYW 707
           KV  REII+RDANRFHHF++G CSCKDYW
Sbjct: 677 KVKEREIILRDANRFHHFRNGECSCKDYW 705


>AT4G02750.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:1221116-1223461 REVERSE
           LENGTH=781
          Length = 781

 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/702 (49%), Positives = 455/702 (64%), Gaps = 4/702 (0%)

Query: 7   TLRVCMVQVRFQCTS-TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAH 65
            LRV     R+   S  G IS Y R G+ E ARK+FDE P   R   SWN M+  Y +  
Sbjct: 83  ALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPE--RDLVSWNVMIKGYVRNR 140

Query: 66  QPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQ 125
              +A  LFE  PE+++ SWN M+SG+ +NG V +AR VFD MP +N VSW +++  YVQ
Sbjct: 141 NLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQ 200

Query: 126 EGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGY 185
              +EEA  LF       +VSW  +LGG +K  ++ +AR+ FD M V+DVV+   +I GY
Sbjct: 201 NSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGY 260

Query: 186 CEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLM 245
            + G+++EAR LFDE P ++V TWT MVSGY +NR V+ AR+LF+ MPERNEVSW AML 
Sbjct: 261 AQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLA 320

Query: 246 GYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAM 305
           GY    RM  A E FD MP + V   N MI G+   G +  AK +F+KM +RD  +W+AM
Sbjct: 321 GYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAM 380

Query: 306 IKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEF 365
           I  Y + G   EAL LF +M+REG  LN                 + G+Q+H RLV+  +
Sbjct: 381 IAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGY 440

Query: 366 DQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRD 425
           +   +V +AL+ MY KCG +  A  +F     KD+V WN+MI GYS+HG GE AL  F  
Sbjct: 441 ETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFES 500

Query: 426 MCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAG 485
           M   G+ PDD + + VLSACS++G V +GR+ F +M   Y V P  +HYACMVDLLGRAG
Sbjct: 501 MKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAG 560

Query: 486 QVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSH 545
            + DA  +++ MP EPDA +WG+LLGA R H   +LAE A +K+  +EP+N+G YVLLS+
Sbjct: 561 LLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSN 620

Query: 546 MYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLE 605
           +YAS GRW DV  +R +++ + V K+PGYSWIE++ K H F  GD   HPE+  I   LE
Sbjct: 621 LYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGD-EFHPEKDEIFAFLE 679

Query: 606 RLDGLLRDAGYSPDHSFVLHDVEEEEKTHSLGYHSEKLAIAYGLLKVPEGMPIRVMKNLR 665
            LD  ++ AGY    S VLHDVEEEEK   + YHSE+LA+AYG+++V  G PIRV+KNLR
Sbjct: 680 ELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLR 739

Query: 666 VCGDCHSAIKLIAKVTGREIIVRDANRFHHFKDGYCSCKDYW 707
           VC DCH+AIK +A++TGR II+RD NRFHHFKDG CSC DYW
Sbjct: 740 VCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781



 Score =  234 bits (596), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 150/507 (29%), Positives = 261/507 (51%), Gaps = 35/507 (6%)

Query: 55  NAMVAAYFQA--HQPHQAVTLFETTP-----EKNIVSWNGMVSGFVKNGMVAEARRVFDA 107
           NA  AA F +        +   +T P     + +I  WN  +S +++ G   EA RVF  
Sbjct: 30  NAHGAANFHSLKRATQTQIQKSQTKPLLKCGDSDIKEWNVAISSYMRTGRCNEALRVFKR 89

Query: 108 MPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLF 167
           MP  + VS+  M+ GY++ G  E A +LF  MPE+++VSW VM+ G +++  +  AR+LF
Sbjct: 90  MPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELF 149

Query: 168 DMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARK 227
           ++MP +DV +   M+ GY + G +++AR++FD MP++N V+W  ++S Y +N +++ A  
Sbjct: 150 EIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACM 209

Query: 228 LFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRA 287
           LF+       VSW  +L G+    ++ EA +FFD+M V+ VV+ N +I G+   G +D A
Sbjct: 210 LFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEA 269

Query: 288 KAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARM-QREGAALNFPXXXXXXXXXXX 346
           + +F++   +D  TW+AM+  Y +     EA  LF +M +R   + N             
Sbjct: 270 RQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWN------------- 316

Query: 347 XXXXDHGRQVHARLVRSEFD----QDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVM 402
                + +     + +  FD    +++   + +IT Y +CG +  AK +F++ P +D V 
Sbjct: 317 AMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVS 376

Query: 403 WNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMK 462
           W +MI GYSQ G   EAL +F  M   G   +  SF   LS C+    ++ G+++   + 
Sbjct: 377 WAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRL- 435

Query: 463 CKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLA 522
            K   E G      ++ +  + G + +A ++ ++M  + D + W +++     H      
Sbjct: 436 VKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGK-DIVSWNTMIAGYSRH---GFG 491

Query: 523 EVAVE-----KLAQLEPKNAGPYVLLS 544
           EVA+      K   L+P +A    +LS
Sbjct: 492 EVALRFFESMKREGLKPDDATMVAVLS 518


>AT4G16835.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:9472763-9474803 FORWARD
           LENGTH=656
          Length = 656

 Score =  519 bits (1336), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 267/586 (45%), Positives = 372/586 (63%), Gaps = 3/586 (0%)

Query: 124 VQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKD-SRVEDARKLFDMMPVKDVVAVTNMI 182
           V+ G+++ A R+F  M  KN ++W  +L G+ KD SR+ +A +LFD +P  D  +   M+
Sbjct: 72  VRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIPEPDTFSYNIML 131

Query: 183 GGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTA 242
             Y      E+A++ FD MP ++  +W TM++GYAR   ++ AR+LF  M E+NEVSW A
Sbjct: 132 SCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEKNEVSWNA 191

Query: 243 MLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMR-ERDDGT 301
           M+ GY   G + +AS FF   PV+ VVA   MI G+     V+ A+A+F+ M   ++  T
Sbjct: 192 MISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVT 251

Query: 302 WSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLV 361
           W+AMI  Y       + L LF  M  EG   N                   GRQ+H  + 
Sbjct: 252 WNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVS 311

Query: 362 RSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALN 421
           +S    D+   ++LI+MY KCG+L  A  +F     KDVV WN+MI+GY+QHG  ++AL 
Sbjct: 312 KSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALC 371

Query: 422 VFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLL 481
           +FR+M  + + PD I+F+ VL AC+++G V  G   FESM   Y+VEP  +HY CMVDLL
Sbjct: 372 LFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLL 431

Query: 482 GRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYV 541
           GRAG++ +A++++  MP  P A V+G+LLGACR H  ++LAE A EKL QL  +NA  YV
Sbjct: 432 GRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYV 491

Query: 542 LLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIM 601
            L+++YASK RWEDV  VR+++K  +V+K+PGYSWIE+  K H F   D   HPE   I 
Sbjct: 492 QLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSD-RIHPELDSIH 550

Query: 602 KMLERLDGLLRDAGYSPDHSFVLHDVEEEEKTHSLGYHSEKLAIAYGLLKVPEGMPIRVM 661
           K L+ L+  ++ AGY P+  F LH+VEEE+K   L +HSEKLA+A+G +K+P+G  I+V 
Sbjct: 551 KKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVF 610

Query: 662 KNLRVCGDCHSAIKLIAKVTGREIIVRDANRFHHFKDGYCSCKDYW 707
           KNLR+CGDCH AIK I+++  REIIVRD  RFHHFKDG CSC DYW
Sbjct: 611 KNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 656



 Score =  166 bits (421), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 104/317 (32%), Positives = 164/317 (51%), Gaps = 24/317 (7%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMV-------AAYFQAHQPHQAVTLFETT 77
           I+R  R G I+ A +VF       + T +WN+++       +   +AHQ      LF+  
Sbjct: 68  IARCVRSGDIDGALRVFHGMRA--KNTITWNSLLIGISKDPSRMMEAHQ------LFDEI 119

Query: 78  PEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFW 137
           PE +  S+N M+S +V+N    +A+  FD MP ++  SW +M+ GY + G +E+A  LF+
Sbjct: 120 PEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFY 179

Query: 138 RMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARAL 197
            M EKN VSW  M+ G ++   +E A   F + PV+ VVA T MI GY +  ++E A A+
Sbjct: 180 SMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAM 239

Query: 198 FDEMP-KRNVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGR 252
           F +M   +N+VTW  M+SGY  N R +   KLF  M E     N    ++ L+G +    
Sbjct: 240 FKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSA 299

Query: 253 MREASEFFDAMP----VKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKV 308
           ++   +    +        V A   +I  +   G++  A  +FE M+++D   W+AMI  
Sbjct: 300 LQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISG 359

Query: 309 YERKGFELEALGLFARM 325
           Y + G   +AL LF  M
Sbjct: 360 YAQHGNADKALCLFREM 376



 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/266 (21%), Positives = 109/266 (40%), Gaps = 54/266 (20%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEK- 80
           T  I+ Y +  ++E A  +F +   +++   +WNAM++ Y +  +P   + LF    E+ 
Sbjct: 221 TAMITGYMKAKKVELAEAMFKDMT-VNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEG 279

Query: 81  --------------------------------------NIVSWNGMVSGFVKNGMVAEAR 102
                                                 ++ +   ++S + K G + +A 
Sbjct: 280 IRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAW 339

Query: 103 RVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV-VSWTVMLGGLLKDSRV- 160
           ++F+ M  ++VV+W +M+ GY Q GN ++A  LF  M +  +   W   +  LL  +   
Sbjct: 340 KLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAG 399

Query: 161 ---------EDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKR-NVVTWT 210
                    E   + + + P  D    T M+      G+LEEA  L   MP R +   + 
Sbjct: 400 LVNIGMAYFESMVRDYKVEPQPD--HYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFG 457

Query: 211 TMVSGYARNRRVDVARKLFEVMPERN 236
           T++     ++ V++A    E + + N
Sbjct: 458 TLLGACRVHKNVELAEFAAEKLLQLN 483


>AT2G22070.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr2:9383602-9385962 FORWARD LENGTH=786
          Length = 786

 Score =  474 bits (1219), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 262/731 (35%), Positives = 405/731 (55%), Gaps = 54/731 (7%)

Query: 28  YARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNG 87
           Y++ G   +ARK+FDE P   RT  SWN +++AY +          F+  P+++ VSW  
Sbjct: 59  YSKTGYALHARKLFDEMPL--RTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTT 116

Query: 88  MVSGFVKNGMVAEARRVFDAMPVRNV----VSWTSMVRGYVQEGNVEEAERLFWRMPE-- 141
           M+ G+   G   +A RV   M    +     + T+++        +E  +++   + +  
Sbjct: 117 MIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLG 176

Query: 142 --KNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFD 199
              NV     +L    K      A+ +FD M V+D+ +   MI  + + G+++ A A F+
Sbjct: 177 LRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFE 236

Query: 200 EMPKRNVVTWTTMVSGYARN----RRVDVARKLFE---VMPER----------------- 235
           +M +R++VTW +M+SG+ +     R +D+  K+     + P+R                 
Sbjct: 237 QMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLC 296

Query: 236 ----------------NEVSWTAMLMGYTHSGRMREASEFFDAMPVK--PVVACNEMIMG 277
                           + +   A++  Y+  G +  A    +    K   +     ++ G
Sbjct: 297 IGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDG 356

Query: 278 FGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXX 337
           +   GD+++AK +F  +++RD   W+AMI  YE+ G   EA+ LF  M   G   N    
Sbjct: 357 YIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTL 416

Query: 338 XXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPL 397
                         HG+Q+H   V+S     + V++ALITMY K G++  A   F+    
Sbjct: 417 AAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRC 476

Query: 398 -KDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGRE 456
            +D V W SMI   +QHG  EEAL +F  M + G+ PD I+++GV SAC+++G V +GR+
Sbjct: 477 ERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQ 536

Query: 457 IFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTH 516
            F+ MK   ++ P + HYACMVDL GRAG + +A E +EKMP+EPD + WGSLL ACR H
Sbjct: 537 YFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVH 596

Query: 517 MKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSW 576
             +DL +VA E+L  LEP+N+G Y  L+++Y++ G+WE+   +R+ +K   V K  G+SW
Sbjct: 597 KNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSW 656

Query: 577 IEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDVEEEEKTHSL 636
           IEV+ K H+F G ++  HPE+  I   ++++   ++  GY PD + VLHD+EEE K   L
Sbjct: 657 IEVKHKVHVF-GVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQIL 715

Query: 637 GYHSEKLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIVRDANRFHHF 696
            +HSEKLAIA+GL+  P+   +R+MKNLRVC DCH+AIK I+K+ GREIIVRD  RFHHF
Sbjct: 716 RHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHF 775

Query: 697 KDGYCSCKDYW 707
           KDG+CSC+DYW
Sbjct: 776 KDGFCSCRDYW 786



 Score =  158 bits (400), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 123/458 (26%), Positives = 206/458 (44%), Gaps = 47/458 (10%)

Query: 103 RVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVED 162
           RV  +  + +V    +++  Y + G    A +LF  MP +   SW  +L    K   ++ 
Sbjct: 39  RVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDS 98

Query: 163 ARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNV----VTWTTMVSGYAR 218
             + FD +P +D V+ T MI GY   G+  +A  +  +M K  +     T T +++  A 
Sbjct: 99  TCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAA 158

Query: 219 NRRVDVARKLFEVMPE---RNEVSWTAMLMG-YTHSGRMREASEFFDAMPVKPVVACNEM 274
            R ++  +K+   + +   R  VS +  L+  Y   G    A   FD M V+ + + N M
Sbjct: 159 TRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAM 218

Query: 275 IMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNF 334
           I      G +D A A FE+M ERD  TW++MI  + ++G++L AL +F++M R+  +L  
Sbjct: 219 IALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRD--SLLS 276

Query: 335 PXXXXXXXXXXXXXXXDH---GRQVHARLVRSEFDQDLYVASALITMYVKC--------- 382
           P               +    G+Q+H+ +V + FD    V +ALI+MY +C         
Sbjct: 277 PDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRL 336

Query: 383 ------------------------GDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEE 418
                                   GD+ +AK IF     +DVV W +MI GY QHG   E
Sbjct: 337 IEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGE 396

Query: 419 ALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMV 478
           A+N+FR M   G  P+  +   +LS  S    +  G++I  S     ++   +     ++
Sbjct: 397 AINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYS-VSVSNALI 455

Query: 479 DLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTH 516
            +  +AG +  A    + +  E D + W S++ A   H
Sbjct: 456 TMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQH 493



 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 91/199 (45%), Gaps = 24/199 (12%)

Query: 21  STGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEK 80
           S   I+ YA+ G I +A + FD      R T SW +M+ A  Q     +A+ LFET   +
Sbjct: 451 SNALITMYAKAGNITSASRAFD-LIRCERDTVSWTSMIIALAQHGHAEEALELFETMLME 509

Query: 81  NI----VSWNGMVSGFVKNGMVAEARRVFDAMP-----VRNVVSWTSMVRGYVQEGNVEE 131
            +    +++ G+ S     G+V + R+ FD M      +  +  +  MV  + + G ++E
Sbjct: 510 GLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQE 569

Query: 132 AERLFWRMP-EKNVVSWTVMLGGLLKDSRVED--------ARKLFDMMPVKDVVAVTNMI 182
           A+    +MP E +VV+W    G LL   RV          A +L  + P ++  A + + 
Sbjct: 570 AQEFIEKMPIEPDVVTW----GSLLSACRVHKNIDLGKVAAERLLLLEP-ENSGAYSALA 624

Query: 183 GGYCEEGRLEEARALFDEM 201
             Y   G+ EEA  +   M
Sbjct: 625 NLYSACGKWEEAAKIRKSM 643


>AT5G46460.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:18840305-18842398 FORWARD
           LENGTH=697
          Length = 697

 Score =  467 bits (1201), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 242/666 (36%), Positives = 380/666 (57%), Gaps = 24/666 (3%)

Query: 57  MVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSW 116
           ++  +  + +  +A  +F   P  ++  +  M++G+ ++  + +A  +FD MPVR+VVSW
Sbjct: 41  LICNHLLSRRIDEAREVFNQVPSPHVSLYTKMITGYTRSNRLVDALNLFDEMPVRDVVSW 100

Query: 117 TSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVV 176
            SM+ G V+ G++  A +LF  MPE++VVSWT M+ G  +  +V+ A +LF  MPVKD  
Sbjct: 101 NSMISGCVECGDMNTAVKLFDEMPERSVVSWTAMVNGCFRSGKVDQAERLFYQMPVKDTA 160

Query: 177 AVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVM---- 232
           A  +M+ GY + G++++A  LF +MP +NV++WTTM+ G  +N R   A  LF+ M    
Sbjct: 161 AWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCC 220

Query: 233 PERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVV----------ACNEMIMGFGFDG 282
            +     +T ++    +      A  F   + V  ++              +I  +    
Sbjct: 221 IKSTSRPFTCVITACAN------APAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCK 274

Query: 283 DVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXX 342
            +  ++ VF++        W+A++  Y       +AL +F+ M R     N         
Sbjct: 275 RIGDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLN 334

Query: 343 XXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVM 402
                   D G+++H   V+   + D +V ++L+ MY   G++  A  +F +   K +V 
Sbjct: 335 SCSALGTLDWGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIVS 394

Query: 403 WNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMK 462
           WNS+I G +QHG G+ A  +F  M      PD+I+F G+LSACS+ G +++GR++F  M 
Sbjct: 395 WNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRKLFYYMS 454

Query: 463 CKY-QVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDL 521
                ++  I+HY CMVD+LGR G++ +A E++E+M ++P+ +VW +LL ACR H  +D 
Sbjct: 455 SGINHIDRKIQHYTCMVDILGRCGKLKEAEELIERMVVKPNEMVWLALLSACRMHSDVDR 514

Query: 522 AEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEK 581
            E A   +  L+ K++  YVLLS++YAS GRW +V  +R K+K   ++K PG SW+ +  
Sbjct: 515 GEKAAAAIFNLDSKSSAAYVLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGSSWVVIRG 574

Query: 582 KAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDVEEEEKTHSLGYHSE 641
           K H F  GD    P    I + LE L   L++ GY+PD+   LHDVE+E+K   L YHSE
Sbjct: 575 KKHEFFSGD---QPHCSRIYEKLEFLREKLKELGYAPDYRSALHDVEDEQKEEMLWYHSE 631

Query: 642 KLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIVRDANRFHHFKDGYC 701
           +LAIA+GL+   EG  + VMKNLRVC DCH+ IKLI+ V GREI++RD  RFHHFK+G C
Sbjct: 632 RLAIAFGLINTVEGSAVTVMKNLRVCEDCHTVIKLISGVVGREIVLRDPIRFHHFKNGTC 691

Query: 702 SCKDYW 707
           SC DYW
Sbjct: 692 SCGDYW 697



 Score =  197 bits (501), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 125/398 (31%), Positives = 204/398 (51%), Gaps = 4/398 (1%)

Query: 149 VMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVT 208
           V++   L   R+++AR++F+ +P   V   T MI GY    RL +A  LFDEMP R+VV+
Sbjct: 40  VLICNHLLSRRIDEAREVFNQVPSPHVSLYTKMITGYTRSNRLVDALNLFDEMPVRDVVS 99

Query: 209 WTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPV 268
           W +M+SG      ++ A KLF+ MPER+ VSWTAM+ G   SG++ +A   F  MPVK  
Sbjct: 100 WNSMISGCVECGDMNTAVKLFDEMPERSVVSWTAMVNGCFRSGKVDQAERLFYQMPVKDT 159

Query: 269 VACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQRE 328
            A N M+ G+   G VD A  +F++M  ++  +W+ MI   ++     EAL LF  M R 
Sbjct: 160 AAWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRC 219

Query: 329 GAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRA 388
                                   G QVH  +++  F  + YV+++LIT Y  C  +  +
Sbjct: 220 CIKSTSRPFTCVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIGDS 279

Query: 389 KWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYS 448
           + +F+    + V +W ++++GYS +   E+AL++F  M  + + P+  +F   L++CS  
Sbjct: 280 RKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSAL 339

Query: 449 GKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGS 508
           G +  G+E+   +  K  +E        +V +   +G VNDAV +  K+  +   + W S
Sbjct: 340 GTLDWGKEM-HGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKI-FKKSIVSWNS 397

Query: 509 LLGACRTHMKLDLAEVAVEKLAQL--EPKNAGPYVLLS 544
           ++  C  H +   A V   ++ +L  EP       LLS
Sbjct: 398 IIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLS 435



 Score =  153 bits (387), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 112/443 (25%), Positives = 205/443 (46%), Gaps = 54/443 (12%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKN 81
           T  I+ Y R  ++ +A  +FDE P   R   SWN+M++   +    + AV LF+  PE++
Sbjct: 70  TKMITGYTRSNRLVDALNLFDEMP--VRDVVSWNSMISGCVECGDMNTAVKLFDEMPERS 127

Query: 82  IVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPE 141
           +VSW  MV+G  ++G V +A R+F  MPV++  +W SMV GY+Q G V++A +LF +MP 
Sbjct: 128 VVSWTAMVNGCFRSGKVDQAERLFYQMPVKDTAAWNSMVHGYLQFGKVDDALKLFKQMPG 187

Query: 142 KNVVSWTVMLGGLLKDSRVEDARKLFDMM----------PVKDVVAV------------- 178
           KNV+SWT M+ GL ++ R  +A  LF  M          P   V+               
Sbjct: 188 KNVISWTTMICGLDQNERSGEALDLFKNMLRCCIKSTSRPFTCVITACANAPAFHMGIQV 247

Query: 179 ----------------TNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRV 222
                            ++I  Y    R+ ++R +FDE     V  WT ++SGY+ N++ 
Sbjct: 248 HGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVFDEKVHEQVAVWTALLSGYSLNKKH 307

Query: 223 DVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAMPVK-----PVVACNE 273
           + A  +F  M       N+ ++ + L   +  G +    E    + VK          N 
Sbjct: 308 EDALSIFSGMLRNSILPNQSTFASGLNSCSALGTLDWGKE-MHGVAVKLGLETDAFVGNS 366

Query: 274 MIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALN 333
           +++ +   G+V+ A +VF K+ ++   +W+++I    + G    A  +F +M R     +
Sbjct: 367 LVVMYSDSGNVNDAVSVFIKIFKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPD 426

Query: 334 FPXXXXXXXXXXXXXXXDHGRQVHARLVR--SEFDQDLYVASALITMYVKCGDLVRAKWI 391
                            + GR++   +    +  D+ +   + ++ +  +CG L  A+ +
Sbjct: 427 EITFTGLLSACSHCGFLEKGRKLFYYMSSGINHIDRKIQHYTCMVDILGRCGKLKEAEEL 486

Query: 392 FNRYPLK-DVVMWNSMITGYSQH 413
             R  +K + ++W ++++    H
Sbjct: 487 IERMVVKPNEMVWLALLSACRMH 509



 Score = 66.6 bits (161), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 108/243 (44%), Gaps = 21/243 (8%)

Query: 21  STGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEK 80
           S   I+ YA   +I ++RKVFDE   +H   + W A+++ Y    +   A+++F      
Sbjct: 263 SASLITFYANCKRIGDSRKVFDEK--VHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRN 320

Query: 81  NIV-SWNGMVSGFVKNGMVAEAR--RVFDAMPVR-----NVVSWTSMVRGYVQEGNVEEA 132
           +I+ + +   SG      +      +    + V+     +     S+V  Y   GNV +A
Sbjct: 321 SILPNQSTFASGLNSCSALGTLDWGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDA 380

Query: 133 ERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMM----PVKDVVAVTNMIGGYCEE 188
             +F ++ +K++VSW  ++ G  +  R + A  +F  M       D +  T ++      
Sbjct: 381 VSVFIKIFKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHC 440

Query: 189 GRLEEARALFDEMPK------RNVVTWTTMVSGYARNRRVDVARKLFEVMPER-NEVSWT 241
           G LE+ R LF  M        R +  +T MV    R  ++  A +L E M  + NE+ W 
Sbjct: 441 GFLEKGRKLFYYMSSGINHIDRKIQHYTCMVDILGRCGKLKEAEELIERMVVKPNEMVWL 500

Query: 242 AML 244
           A+L
Sbjct: 501 ALL 503


>AT5G09950.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:3102877-3105864 REVERSE
           LENGTH=995
          Length = 995

 Score =  459 bits (1181), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 272/753 (36%), Positives = 411/753 (54%), Gaps = 71/753 (9%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLF------- 74
           +G +S +A+ G +  ARKVF++     R   + N ++    +     +A  LF       
Sbjct: 247 SGLVSAFAKSGSLSYARKVFNQMET--RNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMI 304

Query: 75  ETTPEKNIVSW-------------------------------------NGMVSGFVKNGM 97
           + +PE  ++                                       NG+V+ + K G 
Sbjct: 305 DVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGS 364

Query: 98  VAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKD 157
           +A+ARRVF  M  ++ VSW SM+ G  Q G   EA   +  M   +++  +  L   L  
Sbjct: 365 IADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSS 424

Query: 158 SRVEDARKLFDMMPVKDV-------VAVTN-MIGGYCEEGRLEEARALFDEMPKRNVVTW 209
                  KL   +  + +       V+V+N ++  Y E G L E R +F  MP+ + V+W
Sbjct: 425 CASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSW 484

Query: 210 TTMVSGYARNRRVDVARKLFEVMPER-----NEVSWTAMLMGYTHSGRMREASEFFDAMP 264
            +++   AR+ R      +  +  +R     N ++++++L   +      E  +    + 
Sbjct: 485 NSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSL-SFGELGKQIHGLA 543

Query: 265 VKPVVAC-----NEMIMGFGFDGDVDRAKAVFEKMRER-DDGTWSAMIKVYERKGFELEA 318
           +K  +A      N +I  +G  G++D  + +F +M ER D+ TW++MI  Y       +A
Sbjct: 544 LKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKA 603

Query: 319 LGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITM 378
           L L   M + G  L+                 + G +VHA  VR+  + D+ V SAL+ M
Sbjct: 604 LDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDM 663

Query: 379 YVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSG-VPPDDIS 437
           Y KCG L  A   FN  P+++   WNSMI+GY++HG GEEAL +F  M L G  PPD ++
Sbjct: 664 YSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVT 723

Query: 438 FIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKM 497
           F+GVLSACS++G ++EG + FESM   Y + P IEH++CM D+LGRAG+++   + +EKM
Sbjct: 724 FVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKM 783

Query: 498 PMEPDAIVWGSLLGAC--RTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWED 555
           PM+P+ ++W ++LGAC      K +L + A E L QLEP+NA  YVLL +MYA+ GRWED
Sbjct: 784 PMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWED 843

Query: 556 VEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAG 615
           +   R+K+K   V K  GYSW+ ++   HMFV GD + HP+  +I K L+ L+  +RDAG
Sbjct: 844 LVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKS-HPDADVIYKKLKELNRKMRDAG 902

Query: 616 YSPDHSFVLHDVEEEEKTHSLGYHSEKLAIAYGL-LKVPEGMPIRVMKNLRVCGDCHSAI 674
           Y P   F L+D+E+E K   L YHSEKLA+A+ L  +    +PIR+MKNLRVCGDCHSA 
Sbjct: 903 YVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAF 962

Query: 675 KLIAKVTGREIIVRDANRFHHFKDGYCSCKDYW 707
           K I+K+ GR+II+RD+NRFHHF+DG CSC D+W
Sbjct: 963 KYISKIEGRQIILRDSNRFHHFQDGACSCSDFW 995



 Score =  127 bits (320), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 113/475 (23%), Positives = 210/475 (44%), Gaps = 46/475 (9%)

Query: 73  LFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEA 132
           L++   +K++   N +++ +++ G    AR+VFD MP+RN VSW  +V GY + G  +EA
Sbjct: 27  LYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHKEA 86

Query: 133 ERLFWRMPEKNVVSWTVMLGGLLKDSR------VEDARK----LFDMMPVKDVVAVTNMI 182
                 M ++ + S       +L+  +      +   R+    +F +    D V    +I
Sbjct: 87  LVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVLI 146

Query: 183 GGYCE-EGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVM----PERNE 237
             Y +  G +  A   F ++  +N V+W +++S Y++      A ++F  M        E
Sbjct: 147 SMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTE 206

Query: 238 VSWTAMLMGYTHSGRMREAS---------EFFDAMPVKPVVACNEMIMGFGFDGDVDRAK 288
            ++ +++   T +  + E               +  +  +   + ++  F   G +  A+
Sbjct: 207 YTFGSLV---TTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYAR 263

Query: 289 AVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQR------EGAAL---NFPXXXX 339
            VF +M  R+  T + ++    R+ +  EA  LF  M        E   +   +FP    
Sbjct: 264 KVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESYVILLSSFP---- 319

Query: 340 XXXXXXXXXXXDHGRQVHARLVRSEF-DQDLYVASALITMYVKCGDLVRAKWIFNRYPLK 398
                        GR+VH  ++ +   D  + + + L+ MY KCG +  A+ +F     K
Sbjct: 320 -EYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDK 378

Query: 399 DVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIF 458
           D V WNSMITG  Q+G   EA+  ++ M    + P   + I  LS+C+     K G++I 
Sbjct: 379 DSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIH 438

Query: 459 -ESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGA 512
            ES+K    +   + +   ++ L    G +N+  +I   MP E D + W S++GA
Sbjct: 439 GESLKLGIDLNVSVSN--ALMTLYAETGYLNECRKIFSSMP-EHDQVSWNSIIGA 490



 Score = 82.8 bits (203), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 126/297 (42%), Gaps = 50/297 (16%)

Query: 353 GRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQ 412
            R  H+RL ++  D+D+Y+ + LI  Y++ GD V A+ +F+  PL++ V W  +++GYS+
Sbjct: 20  ARFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSR 79

Query: 413 HGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVK--EGREIFESM-KCKYQVEP 469
           +G  +EAL   RDM   G+  +  +F+ VL AC   G V    GR+I   M K  Y V+ 
Sbjct: 80  NGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDA 139

Query: 470 GIE------HYAC------------------------MVDLLGRAGQVNDAVEIVEKMPM 499
            +       ++ C                        ++ +  +AG    A  I   M  
Sbjct: 140 VVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQY 199

Query: 500 E---PDAIVWGSLL-GACR-THMKLDLAE---VAVEKLAQLEPKNAGPYVLLSHMYASKG 551
           +   P    +GSL+  AC  T   + L E     ++K   L     G    L   +A  G
Sbjct: 200 DGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSG--LVSAFAKSG 257

Query: 552 RWEDVEVVREKIKTRSVIKLPGY-------SWIEVEKKAHMFVGGDNNCHPEQPIIM 601
                  V  +++TR+ + L G         W E   K  M +    +  PE  +I+
Sbjct: 258 SLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESYVIL 314


>AT4G33990.1 | Symbols: EMB2758 | Tetratricopeptide repeat
           (TPR)-like superfamily protein | chr4:16290141-16292612
           REVERSE LENGTH=823
          Length = 823

 Score =  450 bits (1158), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 260/746 (34%), Positives = 402/746 (53%), Gaps = 56/746 (7%)

Query: 14  QVRFQCTSTGAISRYARIGQIENARKVFDETPHI-HRTTSSWNAMVAAYFQAHQPHQAVT 72
           Q++  C S   ++ Y  +G +  AR  FD   HI +R   +WN M++ Y +A    + + 
Sbjct: 82  QIQNVCISAKLVNLYCYLGNVALARHTFD---HIQNRDVYAWNLMISGYGRAGNSSEVIR 138

Query: 73  LFET-------TPE-----------KNIVSWNGMVSGFVKNGM----------------- 97
            F         TP+           + ++  N +    +K G                  
Sbjct: 139 CFSLFMLSSGLTPDYRTFPSVLKACRTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRY 198

Query: 98  --VAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLL 155
             V  AR +FD MPVR++ SW +M+ GY Q GN +EA  L   +   + V+   +L    
Sbjct: 199 KAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMDSVTVVSLLSACT 258

Query: 156 KDSRVEDARKLFDMM---PVKDVVAVTN-MIGGYCEEGRLEEARALFDEMPKRNVVTWTT 211
           +         +        ++  + V+N +I  Y E GRL + + +FD M  R++++W +
Sbjct: 259 EAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNS 318

Query: 212 MVSGYARNRRVDVARKLFEVM------PE-RNEVSWTAML--MGYTHSGRMREASEFFDA 262
           ++  Y  N +   A  LF+ M      P+    +S  ++L  +G   + R  +       
Sbjct: 319 IIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKG 378

Query: 263 MPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLF 322
             ++ +   N +++ +   G VD A+AVF  +   D  +W+ +I  Y + GF  EA+ ++
Sbjct: 379 WFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMY 438

Query: 323 ARMQREG-AALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVK 381
             M+ EG  A N                   G ++H RL+++    D++V ++L  MY K
Sbjct: 439 NIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGK 498

Query: 382 CGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGV 441
           CG L  A  +F + P  + V WN++I  +  HG GE+A+ +F++M   GV PD I+F+ +
Sbjct: 499 CGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTL 558

Query: 442 LSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEP 501
           LSACS+SG V EG+  FE M+  Y + P ++HY CMVD+ GRAGQ+  A++ ++ M ++P
Sbjct: 559 LSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQP 618

Query: 502 DAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVRE 561
           DA +WG+LL ACR H  +DL ++A E L ++EP++ G +VLLS+MYAS G+WE V+ +R 
Sbjct: 619 DASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRS 678

Query: 562 KIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHS 621
               + + K PG+S +EV+ K  +F  G N  HP    + + L  L   L+  GY PDH 
Sbjct: 679 IAHGKGLRKTPGWSSMEVDNKVEVFYTG-NQTHPMYEEMYRELTALQAKLKMIGYVPDHR 737

Query: 622 FVLHDVEEEEKTHSLGYHSEKLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVT 681
           FVL DVE++EK H L  HSE+LAIA+ L+  P    IR+ KNLRVCGDCHS  K I+K+T
Sbjct: 738 FVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKIT 797

Query: 682 GREIIVRDANRFHHFKDGYCSCKDYW 707
            REIIVRD+NRFHHFK+G CSC DYW
Sbjct: 798 EREIIVRDSNRFHHFKNGVCSCGDYW 823



 Score =  100 bits (249), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 158/369 (42%), Gaps = 48/369 (13%)

Query: 179 TNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEV 238
           TN+    C   RL  ++ +      +NV     +V+ Y     V +AR  F+ +  R+  
Sbjct: 65  TNLQSAKCLHARLVVSKQI------QNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVY 118

Query: 239 SWTAMLMGYTHSGRMREASEFFDAMPVK----------PVV--ACNEMIMG--------- 277
           +W  M+ GY  +G   E    F    +           P V  AC  +I G         
Sbjct: 119 AWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVIDGNKIHCLALK 178

Query: 278 FGFDGDV----------DRAKAV------FEKMRERDDGTWSAMIKVYERKGFELEALGL 321
           FGF  DV           R KAV      F++M  RD G+W+AMI  Y + G   EAL L
Sbjct: 179 FGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTL 238

Query: 322 FARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVK 381
              ++    A++                 + G  +H+  ++   + +L+V++ LI +Y +
Sbjct: 239 SNGLR----AMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAE 294

Query: 382 CGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGV 441
            G L   + +F+R  ++D++ WNS+I  Y  +     A+++F++M LS + PD ++ I +
Sbjct: 295 FGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISL 354

Query: 442 LSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEP 501
            S  S  G ++  R +      K      I     +V +  + G V+ A  +   +P   
Sbjct: 355 ASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLP-NT 413

Query: 502 DAIVWGSLL 510
           D I W +++
Sbjct: 414 DVISWNTII 422



 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 84/162 (51%), Gaps = 7/162 (4%)

Query: 356 VHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGL 415
           +HARLV S+  Q++ +++ L+ +Y   G++  A+  F+    +DV  WN MI+GY + G 
Sbjct: 73  LHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGN 132

Query: 416 GEEALNVFRDMCL-SGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHY 474
             E +  F    L SG+ PD  +F  VL AC     V +G +I   +  K+     +   
Sbjct: 133 SSEVIRCFSLFMLSSGLTPDYRTFPSVLKACR---TVIDGNKI-HCLALKFGFMWDVYVA 188

Query: 475 ACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLL-GACRT 515
           A ++ L  R   V +A  + ++MP+  D   W +++ G C++
Sbjct: 189 ASLIHLYSRYKAVGNARILFDEMPVR-DMGSWNAMISGYCQS 229


>AT4G30700.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:14962617-14964995 REVERSE
           LENGTH=792
          Length = 792

 Score =  443 bits (1140), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 259/759 (34%), Positives = 398/759 (52%), Gaps = 95/759 (12%)

Query: 22  TGAISRYARIGQIENARKVF--DETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLF----- 74
           T    R + +G I  AR +F   + P +      +N ++  +     PH ++++F     
Sbjct: 56  TKLTQRLSDLGAIYYARDIFLSVQRPDVFL----FNVLMRGFSVNESPHSSLSVFAHLRK 111

Query: 75  --ETTPEKNIVSWN-GMVSGFVKN--GMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNV 129
             +  P  +  ++     SGF  +  G V   + V D      ++  +++V+ Y +   V
Sbjct: 112 STDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCD-SELLLGSNIVKMYFKFWRV 170

Query: 130 EEAERLFWRMPEKNVVSWTVMLGGLLKDSR-VE----------------DARKLFDMMPV 172
           E+A ++F RMPEK+ + W  M+ G  K+   VE                D   L D++P 
Sbjct: 171 EDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPA 230

Query: 173 ------------------------KDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVT 208
                                    D V +T  I  Y + G+++   ALF E  K ++V 
Sbjct: 231 VAELQELRLGMQIHSLATKTGCYSHDYV-LTGFISLYSKCGKIKMGSALFREFRKPDIVA 289

Query: 209 WTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPV 268
           +  M+ GY  N   +++  LF+ +          ML G     R+R +S     +PV   
Sbjct: 290 YNAMIHGYTSNGETELSLSLFKEL----------MLSG----ARLR-SSTLVSLVPVSGH 334

Query: 269 VACNEMIMGFGFDGD--------------------VDRAKAVFEKMRERDDGTWSAMIKV 308
           +     I G+    +                    ++ A+ +F++  E+   +W+AMI  
Sbjct: 335 LMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISG 394

Query: 309 YERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQD 368
           Y + G   +A+ LF  MQ+   + N                   G+ VH  +  ++F+  
Sbjct: 395 YTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESS 454

Query: 369 LYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCL 428
           +YV++ALI MY KCG +  A+ +F+    K+ V WN+MI+GY  HG G+EALN+F +M  
Sbjct: 455 IYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLN 514

Query: 429 SGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVN 488
           SG+ P  ++F+ VL ACS++G VKEG EIF SM  +Y  EP ++HYACMVD+LGRAG + 
Sbjct: 515 SGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQ 574

Query: 489 DAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYA 548
            A++ +E M +EP + VW +LLGACR H   +LA    EKL +L+P N G +VLLS++++
Sbjct: 575 RALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHS 634

Query: 549 SKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLD 608
           +   +     VR+  K R + K PGY+ IE+ +  H+F  GD + HP+   I + LE+L+
Sbjct: 635 ADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQS-HPQVKEIYEKLEKLE 693

Query: 609 GLLRDAGYSPDHSFVLHDVEEEEKTHSLGYHSEKLAIAYGLLKVPEGMPIRVMKNLRVCG 668
           G +R+AGY P+    LHDVEEEE+   +  HSE+LAIA+GL+    G  IR++KNLRVC 
Sbjct: 694 GKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCL 753

Query: 669 DCHSAIKLIAKVTGREIIVRDANRFHHFKDGYCSCKDYW 707
           DCH+  KLI+K+T R I+VRDANRFHHFKDG CSC DYW
Sbjct: 754 DCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792



 Score = 90.1 bits (222), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 122/272 (44%), Gaps = 65/272 (23%)

Query: 21  STGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLF------ 74
           ST   + Y+++ +IE+ARK+FDE+P   ++  SWNAM++ Y Q      A++LF      
Sbjct: 357 STALTTVYSKLNEIESARKLFDESP--EKSLPSWNAMISGYTQNGLTEDAISLFREMQKS 414

Query: 75  ETTP---------------------------------EKNIVSWNGMVSGFVKNGMVAEA 101
           E +P                                 E +I     ++  + K G +AEA
Sbjct: 415 EFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEA 474

Query: 102 RRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV----VSWTVMLGGLLKD 157
           RR+FD M  +N V+W +M+ GY   G  +EA  +F+ M    +    V++  +L      
Sbjct: 475 RRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHA 534

Query: 158 SRVEDARKLFDMM--------PVKDVVAVTNMIGGYCEEGRLEEARALFDEM---PKRNV 206
             V++  ++F+ M         VK    + +++G     G L+ A    + M   P  +V
Sbjct: 535 GLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILG---RAGHLQRALQFIEAMSIEPGSSV 591

Query: 207 VTWTTMVSGYARNRRVDVAR----KLFEVMPE 234
             W T++     ++  ++AR    KLFE+ P+
Sbjct: 592 --WETLLGACRIHKDTNLARTVSEKLFELDPD 621


>AT1G20230.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:7009570-7011852 FORWARD
           LENGTH=760
          Length = 760

 Score =  441 bits (1135), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 238/706 (33%), Positives = 384/706 (54%), Gaps = 56/706 (7%)

Query: 57  MVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSW 116
           ++A+Y   +  + A  + ++ P+  I S++ ++    K  +  ++  VF  M    ++  
Sbjct: 56  LIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPD 115

Query: 117 TSMVRGYVQEGNVEEAERLFWRMPEKNVVSWT--------VMLGGLLKDSRVEDARKLFD 168
           + ++    +      A ++  ++   + VS           M    ++  R+ DARK+FD
Sbjct: 116 SHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFD 175

Query: 169 MMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRRVDV 224
            M  KDVV  + ++  Y  +G LEE   +  EM       N+V+W  ++SG+ R+     
Sbjct: 176 RMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKE 235

Query: 225 ARKLFE----------------VMPE-----------------------RNEVSWTAMLM 245
           A  +F+                V+P                        +++   +AM+ 
Sbjct: 236 AVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMID 295

Query: 246 GYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRER----DDGT 301
            Y  SG +      F+   +     CN  I G   +G VD+A  +FE  +E+    +  +
Sbjct: 296 MYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVS 355

Query: 302 WSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLV 361
           W+++I    + G ++EAL LF  MQ  G   N                  HGR  H   V
Sbjct: 356 WTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAV 415

Query: 362 RSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALN 421
           R     +++V SALI MY KCG +  ++ +FN  P K++V WNS++ G+S HG  +E ++
Sbjct: 416 RVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMS 475

Query: 422 VFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLL 481
           +F  +  + + PD ISF  +LSAC   G   EG + F+ M  +Y ++P +EHY+CMV+LL
Sbjct: 476 IFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLL 535

Query: 482 GRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYV 541
           GRAG++ +A +++++MP EPD+ VWG+LL +CR    +DLAE+A EKL  LEP+N G YV
Sbjct: 536 GRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYV 595

Query: 542 LLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIM 601
           LLS++YA+KG W +V+ +R K+++  + K PG SWI+V+ + +  + GD + HP+   I 
Sbjct: 596 LLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKS-HPQIDQIT 654

Query: 602 KMLERLDGLLRDAGYSPDHSFVLHDVEEEEKTHSLGYHSEKLAIAYGLLKVPEGMPIRVM 661
           + ++ +   +R +G+ P+  F LHDVEE+E+   L  HSEKLA+ +GLL  P+G P++V+
Sbjct: 655 EKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVI 714

Query: 662 KNLRVCGDCHSAIKLIAKVTGREIIVRDANRFHHFKDGYCSCKDYW 707
           KNLR+CGDCH+ IK I+   GREI +RD NRFHHFKDG CSC D+W
Sbjct: 715 KNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760



 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 98/495 (19%), Positives = 192/495 (38%), Gaps = 100/495 (20%)

Query: 3   YGYSTLRVCMVQVRFQCTSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYF 62
           Y +S+L   + + +    S G  SR    G I ++  +    P++ +  +  +A     F
Sbjct: 82  YSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVL----PNLFKVCAELSA-----F 132

Query: 63  QAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRG 122
           +  +    V+          V    M   +++ G + +AR+VFD M  ++VV+ ++++  
Sbjct: 133 KVGKQIHCVSCVSGLDMDAFVQ-GSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCA 191

Query: 123 YVQEGNVEEAERLFWRMP----EKNVVSWTVMLGGLLKDSRVEDARKLF----------- 167
           Y ++G +EE  R+   M     E N+VSW  +L G  +    ++A  +F           
Sbjct: 192 YARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPD 251

Query: 168 -----DMMP-----------------------VKDVVAVTNMIGGYCEEGRLEEARALFD 199
                 ++P                       +KD   ++ MI  Y + G +    +LF+
Sbjct: 252 QVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFN 311

Query: 200 EMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMRE 255
           +            ++G +RN  VD A ++FE+  E+    N VSWT+++ G   +G+  E
Sbjct: 312 QFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIE 371

Query: 256 ASEFFDAMP---VKP--------VVAC-NEMIMGFGFD---------------------- 281
           A E F  M    VKP        + AC N   +G G                        
Sbjct: 372 ALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALID 431

Query: 282 -----GDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPX 336
                G ++ ++ VF  M  ++   W++++  +   G   E + +F  + R     +F  
Sbjct: 432 MYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFIS 491

Query: 337 XXXXXXXXXXXXXXDHGRQVHARLVRSEF--DQDLYVASALITMYVKCGDLVRAKWIFNR 394
                         D G + + +++  E+     L   S ++ +  + G L  A  +   
Sbjct: 492 FTSLLSACGQVGLTDEGWK-YFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKE 550

Query: 395 YPLK-DVVMWNSMIT 408
            P + D  +W +++ 
Sbjct: 551 MPFEPDSCVWGALLN 565



 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 70/158 (44%), Gaps = 2/158 (1%)

Query: 355 QVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHG 414
           Q HAR+++S    D Y+++ LI  Y        A  +    P   +  ++S+I   ++  
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95

Query: 415 LGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHY 474
           L  +++ VF  M   G+ PD      +   C+     K G++I   + C   ++      
Sbjct: 96  LFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQI-HCVSCVSGLDMDAFVQ 154

Query: 475 ACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGA 512
             M  +  R G++ DA ++ ++M  + D +   +LL A
Sbjct: 155 GSMFHMYMRCGRMGDARKVFDRMS-DKDVVTCSALLCA 191


>AT5G16860.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:5543834-5546386 FORWARD
           LENGTH=850
          Length = 850

 Score =  438 bits (1126), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 266/786 (33%), Positives = 400/786 (50%), Gaps = 104/786 (13%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFET------TP 78
           IS Y  +G + +A  +    P        WN+++ +Y      ++ + LF        TP
Sbjct: 66  ISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTP 125

Query: 79  EKNIVSWN-------------------GMVSGFVKNGMV--------------AEARRVF 105
           +     +                     +V+GF+ N  V              ++AR+VF
Sbjct: 126 DNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVF 185

Query: 106 DAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEK------NVVSWTVM--------- 150
           D M V +VVSW S++  Y + G  + A  +F RM  +      N+    V+         
Sbjct: 186 DEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTH 245

Query: 151 --------------------LGGLLKD-----SRVEDARKLFDMMPVKDVVAVTNMIGGY 185
                               +G  L D       +++A  +F  M VKDVV+   M+ GY
Sbjct: 246 SLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGY 305

Query: 186 CEEGRLEEARALFDEMP----KRNVVTWTTMVSGYARN----RRVDVARKLFEVMPERNE 237
            + GR E+A  LF++M     K +VVTW+  +SGYA+       + V R++     + NE
Sbjct: 306 SQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNE 365

Query: 238 VSWTAMLMGYTHSGRMREASEFFDAMPVKPV-----------VACNEMIMGFGFDGDVDR 286
           V+  ++L G    G +    E        P+           +  N++I  +     VD 
Sbjct: 366 VTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDT 425

Query: 287 AKAVFEKM--RERDDGTWSAMIKVYERKGFELEALGLFARMQREGAAL--NFPXXXXXXX 342
           A+A+F+ +  +ERD  TW+ MI  Y + G   +AL L + M  E      N         
Sbjct: 426 ARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALV 485

Query: 343 XXXXXXXXDHGRQVHARLVRSEFDQ-DLYVASALITMYVKCGDLVRAKWIFNRYPLKDVV 401
                     G+Q+HA  +R++ +   L+V++ LI MY KCG +  A+ +F+    K+ V
Sbjct: 486 ACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEV 545

Query: 402 MWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESM 461
            W S++TGY  HG GEEAL +F +M   G   D ++ + VL ACS+SG + +G E F  M
Sbjct: 546 TWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRM 605

Query: 462 KCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDL 521
           K  + V PG EHYAC+VDLLGRAG++N A+ ++E+MPMEP  +VW + L  CR H K++L
Sbjct: 606 KTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVEL 665

Query: 522 AEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEK 581
            E A EK+ +L   + G Y LLS++YA+ GRW+DV  +R  ++ + V K PG SW+E  K
Sbjct: 666 GEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIK 725

Query: 582 KAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDVEEEEKTHSLGYHSE 641
               F  GD   HP    I ++L      ++D GY P+  F LHDV++EEK   L  HSE
Sbjct: 726 GTTTFFVGDKT-HPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSE 784

Query: 642 KLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIVRDANRFHHFKDGYC 701
           KLA+AYG+L  P+G  IR+ KNLRVCGDCH+A   ++++   +II+RD++RFHHFK+G C
Sbjct: 785 KLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSC 844

Query: 702 SCKDYW 707
           SCK YW
Sbjct: 845 SCKGYW 850



 Score =  141 bits (355), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 119/490 (24%), Positives = 201/490 (41%), Gaps = 70/490 (14%)

Query: 88  MVSGFVKNGMVAEARRVFDAMPVRN--VVSWTSMVRGYVQEGNVEEAERLFWRM------ 139
           ++S ++  G ++ A  +    P  +  V  W S++R Y   G   +   LF  M      
Sbjct: 65  LISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWT 124

Query: 140 PEKNVVSWTVMLGGLLKDSRVEDARKLFDMMP--VKDVVAVTNMIGGYCEEGRLEEARAL 197
           P+     +     G +   R  ++     ++   + +V     ++  Y     L +AR +
Sbjct: 125 PDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKV 184

Query: 198 FDEMPKRNVVTWTTMVSGYARNRRVDVARKLF-----------------EVMPE------ 234
           FDEM   +VV+W +++  YA+  +  VA ++F                  V+P       
Sbjct: 185 FDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGT 244

Query: 235 -----------------RNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMG 277
                            +N      ++  Y   G M EA+  F  M VK VV+ N M+ G
Sbjct: 245 HSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAG 304

Query: 278 FGFDGDVDRAKAVFEKMRER----DDGTWSAMIKVYERKGFELEALGLFARMQREGAALN 333
           +   G  + A  +FEKM+E     D  TWSA I  Y ++G   EALG+  +M   G   N
Sbjct: 305 YSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPN 364

Query: 334 FPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFD-------QDLYVASALITMYVKCGDLV 386
                             HG+++H   ++   D        +  V + LI MY KC  + 
Sbjct: 365 EVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVD 424

Query: 387 RAKWIFNRYPLK--DVVMWNSMITGYSQHGLGEEALNVFRDM----CLSGVPPDDISFIG 440
            A+ +F+    K  DVV W  MI GYSQHG   +AL +  +M    C +   P+  +   
Sbjct: 425 TARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQT--RPNAFTISC 482

Query: 441 VLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPME 500
            L AC+    ++ G++I        Q    +    C++D+  + G ++DA  + + M M 
Sbjct: 483 ALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNM-MA 541

Query: 501 PDAIVWGSLL 510
            + + W SL+
Sbjct: 542 KNEVTWTSLM 551



 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 174/409 (42%), Gaps = 58/409 (14%)

Query: 178 VTNMIGGYCEEGRLEEARALFDEMPKRN--VVTWTTMVSGYARNRRVDVARKLFEVM--- 232
            +++I  Y   G L  A +L    P  +  V  W +++  Y  N   +    LF +M   
Sbjct: 62  TSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSL 121

Query: 233 ---PERNEVSWTAMLMGYTHSGRMREASEFFDAMP--VKPVVACNEMIMGFGFDGDVDRA 287
              P+     +     G   S R  E++     +   +  V   N ++  +     +  A
Sbjct: 122 SWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDA 181

Query: 288 KAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQRE-GAALNFPXXXXXXXXXXX 346
           + VF++M   D  +W+++I+ Y + G    AL +F+RM  E G   +             
Sbjct: 182 RKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCAS 241

Query: 347 XXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSM 406
                 G+Q+H   V SE  Q+++V + L+ MY KCG +  A  +F+   +KDVV WN+M
Sbjct: 242 LGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAM 301

Query: 407 ITGYS-----------------------------------QHGLGEEALNVFRDMCLSGV 431
           + GYS                                   Q GLG EAL V R M  SG+
Sbjct: 302 VAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGI 361

Query: 432 PPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVE-----PGIEHYAC--MVDLLGRA 484
            P++++ I VLS C+  G +  G+EI      KY ++      G E+     ++D+  + 
Sbjct: 362 KPNEVTLISVLSGCASVGALMHGKEI-HCYAIKYPIDLRKNGHGDENMVINQLIDMYAKC 420

Query: 485 GQVNDAVEIVEKM-PMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQL 532
            +V+ A  + + + P E D + W  ++G    H     A  A+E L+++
Sbjct: 421 KKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGD---ANKALELLSEM 466


>AT3G02010.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:337965-340442 FORWARD
           LENGTH=825
          Length = 825

 Score =  438 bits (1126), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 264/812 (32%), Positives = 397/812 (48%), Gaps = 158/812 (19%)

Query: 19  CTSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTP 78
           C S   +    R GQ+  ARKV+DE PH                                
Sbjct: 49  CRSNFIVEDLLRRGQVSAARKVYDEMPH-------------------------------- 76

Query: 79  EKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWR 138
            KN VS N M+SG VK G V+ AR +FDAMP R VV+WT ++  Y +  + +EA +LF +
Sbjct: 77  -KNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQ 135

Query: 139 MPEKNV------VSWTVMLGG---------------------------------LLKD-- 157
           M   +       V++T +L G                                 LLK   
Sbjct: 136 MCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYC 195

Query: 158 --SRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPK------------ 203
              R++ A  LF+ +P KD V    +I GY ++G   E+  LF +M +            
Sbjct: 196 EVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSG 255

Query: 204 ---------------------------RNVVTWTTMVSGYARNRRVDVARKLFEVMPERN 236
                                      R+      ++  Y+++ RV   R LF+ MPE +
Sbjct: 256 VLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELD 315

Query: 237 EVSWTAMLMGYTHSGRMREASEFFDAMPV------------------------------- 265
            VS+  ++  Y+ + +   +  FF  M                                 
Sbjct: 316 FVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHC 375

Query: 266 KPVVACNEMIMGFGFDGDVD---------RAKAVFEKMRERDDGTWSAMIKVYERKGFEL 316
           + ++A  + I+  G +  VD          A+ +F+ + +R   +W+A+I  Y +KG   
Sbjct: 376 QALLATADSILHVG-NSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHG 434

Query: 317 EALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALI 376
             L LF +M+      +                   G+Q+HA ++RS   ++++  S L+
Sbjct: 435 AGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLV 494

Query: 377 TMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDI 436
            MY KCG +  A  +F   P ++ V WN++I+ ++ +G GE A+  F  M  SG+ PD +
Sbjct: 495 DMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSV 554

Query: 437 SFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEK 496
           S +GVL+ACS+ G V++G E F++M   Y + P  +HYACM+DLLGR G+  +A +++++
Sbjct: 555 SILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDE 614

Query: 497 MPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEP-KNAGPYVLLSHMYASKGRWED 555
           MP EPD I+W S+L ACR H    LAE A EKL  +E  ++A  YV +S++YA+ G WE 
Sbjct: 615 MPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEK 674

Query: 556 VEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAG 615
           V  V++ ++ R + K+P YSW+EV  K H+F   D   HP    I++ +  L   +   G
Sbjct: 675 VRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQT-HPNGDEIVRKINELTAEIEREG 733

Query: 616 YSPDHSFVLHDVEEEEKTHSLGYHSEKLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIK 675
           Y PD S V+ DV+E+ K  SL YHSE+LA+A+ L+  PEG PI VMKNLR C DCH+AIK
Sbjct: 734 YKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIK 793

Query: 676 LIAKVTGREIIVRDANRFHHFKDGYCSCKDYW 707
           LI+K+  REI VRD +RFHHF +G CSC DYW
Sbjct: 794 LISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825


>AT2G27610.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:11783927-11786533 REVERSE
           LENGTH=868
          Length = 868

 Score =  437 bits (1125), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 256/741 (34%), Positives = 392/741 (52%), Gaps = 59/741 (7%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLF------E 75
           T  +  Y +    ++ RKVFDE     R   +W  +++ Y +     + +TLF       
Sbjct: 132 TSLVDTYMKGSNFKDGRKVFDEMKE--RNVVTWTTLISGYARNSMNDEVLTLFMRMQNEG 189

Query: 76  TTP---------------------------------EKNIVSWNGMVSGFVKNGMVAEAR 102
           T P                                 +K I   N +++ ++K G V +AR
Sbjct: 190 TQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKAR 249

Query: 103 RVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFW-------RMPEKNVVSWTVMLGGLL 155
            +FD   V++VV+W SM+ GY   G   EA  +F+       R+ E +  S  + L   L
Sbjct: 250 ILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFAS-VIKLCANL 308

Query: 156 KDSRVEDAR--KLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMP-KRNVVTWTTM 212
           K+ R  +     +     + D    T ++  Y +   + +A  LF E+    NVV+WT M
Sbjct: 309 KELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAM 368

Query: 213 VSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAMPVKPV 268
           +SG+ +N   + A  LF  M  +    NE +++ +L            ++       +  
Sbjct: 369 ISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSS 428

Query: 269 VACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQRE 328
                ++  +   G V+ A  VF  + ++D   WSAM+  Y + G    A+ +F  + + 
Sbjct: 429 TVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKG 488

Query: 329 GAALN-FPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVR 387
           G   N F                  G+Q H   ++S  D  L V+SAL+TMY K G++  
Sbjct: 489 GIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIES 548

Query: 388 AKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSY 447
           A+ +F R   KD+V WNSMI+GY+QHG   +AL+VF++M    V  D ++FIGV +AC++
Sbjct: 549 AEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTH 608

Query: 448 SGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWG 507
           +G V+EG + F+ M    ++ P  EH +CMVDL  RAGQ+  A++++E MP    + +W 
Sbjct: 609 AGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWR 668

Query: 508 SLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRS 567
           ++L ACR H K +L  +A EK+  ++P+++  YVLLS+MYA  G W++   VR+ +  R+
Sbjct: 669 TILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERN 728

Query: 568 VIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDV 627
           V K PGYSWIEV+ K + F+ GD + HP +  I   LE L   L+D GY PD S+VL D+
Sbjct: 729 VKKEPGYSWIEVKNKTYSFLAGDRS-HPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDI 787

Query: 628 EEEEKTHSLGYHSEKLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIV 687
           ++E K   L  HSE+LAIA+GL+  P+G P+ ++KNLRVCGDCH  IKLIAK+  REI+V
Sbjct: 788 DDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVV 847

Query: 688 RDANRFHHF-KDGYCSCKDYW 707
           RD+NRFHHF  DG CSC D+W
Sbjct: 848 RDSNRFHHFSSDGVCSCGDFW 868



 Score =  144 bits (364), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 116/468 (24%), Positives = 214/468 (45%), Gaps = 30/468 (6%)

Query: 91  GFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMP------EKNV 144
           G V +  +  A  +FD  P R+  S+ S++ G+ ++G  +EA+RLF  +       + ++
Sbjct: 36  GTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSI 95

Query: 145 VSWTVMLGGLLKDSRVEDARKL----FDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDE 200
            S  + +   L D      R+L         + DV   T+++  Y +    ++ R +FDE
Sbjct: 96  FSSVLKVSATLCDELF--GRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDE 153

Query: 201 MPKRNVVTWTTMVSGYARNRRVDVARKLFEVM----PERNEVSWTAMLMGYTHSGRMREA 256
           M +RNVVTWTT++SGYARN   D    LF  M     + N  ++ A L      G     
Sbjct: 154 MKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRG 213

Query: 257 SEFFDAMPV----KPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERK 312
            +    +      K +   N +I  +   G+V +A+ +F+K   +   TW++MI  Y   
Sbjct: 214 LQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAAN 273

Query: 313 GFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVA 372
           G +LEALG+F  M+     L+                     Q+H  +V+  F  D  + 
Sbjct: 274 GLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIR 333

Query: 373 SALITMYVKCGDLVRAKWIFNRYP-LKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGV 431
           +AL+  Y KC  ++ A  +F     + +VV W +MI+G+ Q+   EEA+++F +M   GV
Sbjct: 334 TALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGV 393

Query: 432 PPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAV 491
            P++ ++  +L+A       +   ++   +K  Y+    +     ++D   + G+V +A 
Sbjct: 394 RPNEFTYSVILTALPVISPSEVHAQV---VKTNYERSSTVG--TALLDAYVKLGKVEEAA 448

Query: 492 EIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGP 539
           ++   +  + D + W ++L     + +    E A++   +L      P
Sbjct: 449 KVFSGID-DKDIVAWSAMLAG---YAQTGETEAAIKMFGELTKGGIKP 492



 Score =  139 bits (351), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 121/547 (22%), Positives = 239/547 (43%), Gaps = 114/547 (20%)

Query: 68  HQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVF---------------------- 105
           + A  LF+ +P ++  S+  ++ GF ++G   EA+R+F                      
Sbjct: 44  YNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVS 103

Query: 106 ----DAMPVR-------------NVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWT 148
               D +  R             +V   TS+V  Y++  N ++  ++F  M E+NVV+WT
Sbjct: 104 ATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWT 163

Query: 149 VMLGGLLKDSRVEDARKLFDMMP------------------------------------- 171
            ++ G  ++S  ++   LF  M                                      
Sbjct: 164 TLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKN 223

Query: 172 -VKDVVAVTN-MIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLF 229
            +   + V+N +I  Y + G + +AR LFD+   ++VVTW +M+SGYA N     A  +F
Sbjct: 224 GLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMF 283

Query: 230 EVMP----ERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDV- 284
             M       +E S+ +++    +   +R   +          + C+ +  GF FD ++ 
Sbjct: 284 YSMRLNYVRLSESSFASVIKLCANLKELRFTEQ----------LHCSVVKYGFLFDQNIR 333

Query: 285 -------DRAKAVFEKMRE-RDDG------TWSAMIKVYERKGFELEALGLFARMQREGA 330
                   +  A+ + +R  ++ G      +W+AMI  + +   + EA+ LF+ M+R+G 
Sbjct: 334 TALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGV 393

Query: 331 ALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKW 390
             N                     +VHA++V++ +++   V +AL+  YVK G +  A  
Sbjct: 394 RPN----EFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAK 449

Query: 391 IFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYS-G 449
           +F+    KD+V W++M+ GY+Q G  E A+ +F ++   G+ P++ +F  +L+ C+ +  
Sbjct: 450 VFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNA 509

Query: 450 KVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSL 509
            + +G++ F     K +++  +   + ++ +  + G +  A E+  K   E D + W S+
Sbjct: 510 SMGQGKQ-FHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVF-KRQREKDLVSWNSM 567

Query: 510 LGACRTH 516
           +     H
Sbjct: 568 ISGYAQH 574



 Score =  134 bits (336), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 114/444 (25%), Positives = 200/444 (45%), Gaps = 59/444 (13%)

Query: 184 GYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAM 243
           G     RL  A  LFD+ P R+  ++ +++ G++R+ R   A++LF              
Sbjct: 36  GTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLF-------------- 81

Query: 244 LMGYTHSGRMREASEFFDAMPVKPVVACNEMI--------MGFGFDGDVD---------- 285
            +     G   + S F   + V   + C+E+         + FGF  DV           
Sbjct: 82  -LNIHRLGMEMDCSIFSSVLKVSATL-CDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYM 139

Query: 286 ------RAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXX 339
                   + VF++M+ER+  TW+ +I  Y R     E L LF RMQ EG   N      
Sbjct: 140 KGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAA 199

Query: 340 XXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKD 399
                        G QVH  +V++  D+ + V+++LI +Y+KCG++ +A+ +F++  +K 
Sbjct: 200 ALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKS 259

Query: 400 VVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFE 459
           VV WNSMI+GY+ +GL  EAL +F  M L+ V   + SF  V+  C+    +KE R   E
Sbjct: 260 VVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCA---NLKELR-FTE 315

Query: 460 SMKC---KYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTH 516
            + C   KY           ++    +   + DA+ + +++    + + W +++      
Sbjct: 316 QLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISG---F 372

Query: 517 MKLDLAEVAVEKLAQLEPKNAGP-----YVLLSHMYASKGRWEDVEVVR---EKIKTRSV 568
           ++ D  E AV+  ++++ K   P      V+L+ +          +VV+   E+  T   
Sbjct: 373 LQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGT 432

Query: 569 IKLPGYSWI-EVEKKAHMFVGGDN 591
             L  Y  + +VE+ A +F G D+
Sbjct: 433 ALLDAYVKLGKVEEAAKVFSGIDD 456



 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 91/202 (45%), Gaps = 17/202 (8%)

Query: 19  CTSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTP 78
           C S+  ++ YA+ G IE+A +VF       +   SWN+M++ Y Q  Q  +A+ +F+   
Sbjct: 531 CVSSALLTMYAKKGNIESAEEVFKR--QREKDLVSWNSMISGYAQHGQAMKALDVFKEMK 588

Query: 79  EKNI----VSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTS-----MVRGYVQEGNV 129
           ++ +    V++ G+ +     G+V E  + FD M     ++ T      MV  Y + G +
Sbjct: 589 KRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQL 648

Query: 130 EEAERLFWRMPE-KNVVSWTVMLGGLLKDSRVEDAR----KLFDMMPVKDVVAVTNMIGG 184
           E+A ++   MP       W  +L       + E  R    K+  M P +D  A   +   
Sbjct: 649 EKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKP-EDSAAYVLLSNM 707

Query: 185 YCEEGRLEEARALFDEMPKRNV 206
           Y E G  +E   +   M +RNV
Sbjct: 708 YAESGDWQERAKVRKLMNERNV 729


>AT4G18750.1 | Symbols: DOT4 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:10304850-10307465 FORWARD
           LENGTH=871
          Length = 871

 Score =  434 bits (1116), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 241/647 (37%), Positives = 371/647 (57%), Gaps = 21/647 (3%)

Query: 79  EKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWR 138
           E+N V  N +V+ ++KN  V  AR+VFD M  R+V+SW S++ GYV  G  E+   +F +
Sbjct: 228 ERNSVG-NSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQ 286

Query: 139 M----PEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVA-----VTNMIGGYCEEG 189
           M     E ++ +   +  G   DSR+    +    + VK   +        ++  Y + G
Sbjct: 287 MLVSGIEIDLATIVSVFAGC-ADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCG 345

Query: 190 RLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLM 245
            L+ A+A+F EM  R+VV++T+M++GYAR      A KLFE M E     +  + TA+L 
Sbjct: 346 DLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLN 405

Query: 246 GYTHSGRMREASEFFDAMPVKP----VVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGT 301
                  + E     + +        +   N ++  +   G +  A+ VF +MR +D  +
Sbjct: 406 CCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIIS 465

Query: 302 WSAMIKVYERKGFELEALGLFARMQREGA-ALNFPXXXXXXXXXXXXXXXDHGRQVHARL 360
           W+ +I  Y +  +  EAL LF  +  E   + +                 D GR++H  +
Sbjct: 466 WNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYI 525

Query: 361 VRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEAL 420
           +R+ +  D +VA++L+ MY KCG L+ A  +F+    KD+V W  MI GY  HG G+EA+
Sbjct: 526 MRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAI 585

Query: 421 NVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDL 480
            +F  M  +G+  D+ISF+ +L ACS+SG V EG   F  M+ + ++EP +EHYAC+VD+
Sbjct: 586 ALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDM 645

Query: 481 LGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPY 540
           L R G +  A   +E MP+ PDA +WG+LL  CR H  + LAE   EK+ +LEP+N G Y
Sbjct: 646 LARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYY 705

Query: 541 VLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPII 600
           VL++++YA   +WE V+ +R++I  R + K PG SWIE++ + ++FV GD++ +PE   I
Sbjct: 706 VLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSS-NPETENI 764

Query: 601 MKMLERLDGLLRDAGYSPDHSFVLHDVEEEEKTHSLGYHSEKLAIAYGLLKVPEGMPIRV 660
              L ++   + + GYSP   + L D EE EK  +L  HSEKLA+A G++    G  IRV
Sbjct: 765 EAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRV 824

Query: 661 MKNLRVCGDCHSAIKLIAKVTGREIIVRDANRFHHFKDGYCSCKDYW 707
            KNLRVCGDCH   K ++K+T REI++RD+NRFH FKDG+CSC+ +W
Sbjct: 825 TKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  145 bits (365), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 119/488 (24%), Positives = 212/488 (43%), Gaps = 89/488 (18%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVS 84
           + R+   G +ENA K+          +  W+           P    ++ +   +   + 
Sbjct: 68  LRRFCESGNLENAVKLL-------CVSGKWDI---------DPRTLCSVLQLCADSKSLK 111

Query: 85  WNGMVSGFVK-NGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKN 143
               V  F++ NG V ++          N+ S  S++  Y   G+++EA R+F  +  + 
Sbjct: 112 DGKEVDNFIRGNGFVIDS----------NLGSKLSLM--YTNCGDLKEASRVFDEVKIEK 159

Query: 144 VVSWTVMLGGLLKDSRVEDARKLFDMM--------------PVKDVVAVTNMIGGYCEEG 189
            + W +++  L K      +  LF  M                K   ++ ++ GG    G
Sbjct: 160 ALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHG 219

Query: 190 RLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTH 249
            +     L     +RN V   ++V+ Y +N+RVD ARK+F+ M ER+ +SW +++ GY  
Sbjct: 220 FI-----LKSGFGERNSVG-NSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVS 273

Query: 250 SGRMREASEFF----------DAMPVKPVVA----------------------------- 270
           +G   +    F          D   +  V A                             
Sbjct: 274 NGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRF 333

Query: 271 CNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGA 330
           CN ++  +   GD+D AKAVF +M +R   ++++MI  Y R+G   EA+ LF  M+ EG 
Sbjct: 334 CNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGI 393

Query: 331 ALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKW 390
           + +                 D G++VH  +  ++   D++V++AL+ MY KCG +  A+ 
Sbjct: 394 SPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAEL 453

Query: 391 IFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSG-VPPDDISFIGVLSACSYSG 449
           +F+   +KD++ WN++I GYS++    EAL++F  +       PD+ +   VL AC+   
Sbjct: 454 VFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLS 513

Query: 450 KVKEGREI 457
              +GREI
Sbjct: 514 AFDKGREI 521



 Score =  107 bits (267), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 100/454 (22%), Positives = 192/454 (42%), Gaps = 74/454 (16%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQA-------------- 70
           ++ Y +  ++++ARKVFDE     R   SWN+++  Y       +               
Sbjct: 237 VAFYLKNQRVDSARKVFDEMT--ERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEI 294

Query: 71  -----VTLFETTPEKNIVSW--------------------NGMVSGFVKNGMVAEARRVF 105
                V++F    +  ++S                     N ++  + K G +  A+ VF
Sbjct: 295 DLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVF 354

Query: 106 DAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEK----NVVSWTVMLGGLLKDSRVE 161
             M  R+VVS+TSM+ GY +EG   EA +LF  M E+    +V + T +L    +   ++
Sbjct: 355 REMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLD 414

Query: 162 DARKLFDMMPVKDV---VAVTN-MIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYA 217
           + +++ + +   D+   + V+N ++  Y + G ++EA  +F EM  +++++W T++ GY+
Sbjct: 415 EGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYS 474

Query: 218 RNRRVDVARKLFEVMPERNE---------------VSWTAMLMGYTHSGRMREASEFFDA 262
           +N   + A  LF ++ E                   S +A   G    G +     F D 
Sbjct: 475 KNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDR 534

Query: 263 MPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLF 322
                    N ++  +   G +  A  +F+ +  +D  +W+ MI  Y   GF  EA+ LF
Sbjct: 535 H------VANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALF 588

Query: 323 ARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVA--SALITMYV 380
            +M++ G   +                 D G +    ++R E   +  V   + ++ M  
Sbjct: 589 NQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFF-NIMRHECKIEPTVEHYACIVDMLA 647

Query: 381 KCGDLVRAKWIFNRYPL-KDVVMWNSMITGYSQH 413
           + GDL++A       P+  D  +W +++ G   H
Sbjct: 648 RTGDLIKAYRFIENMPIPPDATIWGALLCGCRIH 681



 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/380 (22%), Positives = 163/380 (42%), Gaps = 58/380 (15%)

Query: 282 GDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXX 341
           GD+  A  VF++++      W+ ++    + G    ++GLF +M   G  ++        
Sbjct: 143 GDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVS 202

Query: 342 XXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVV 401
                      G Q+H  +++S F +   V ++L+  Y+K   +  A+ +F+    +DV+
Sbjct: 203 KSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVI 262

Query: 402 MWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREI---- 457
            WNS+I GY  +GL E+ L+VF  M +SG+  D  + + V + C+ S  +  GR +    
Sbjct: 263 SWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIG 322

Query: 458 ------------------------FESMKCKYQ--VEPGIEHYACMVDLLGRAGQVNDAV 491
                                    +S K  ++   +  +  Y  M+    R G   +AV
Sbjct: 323 VKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAV 382

Query: 492 EIVEKMPME---PDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSH--- 545
           ++ E+M  E   PD     ++L  C  +  LD  +   E    ++  + G  + +S+   
Sbjct: 383 KLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHE---WIKENDLGFDIFVSNALM 439

Query: 546 -MYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGG-DNNCHPEQPIIMKM 603
            MYA  G  ++ E+V  +++ + +I     SW       +  +GG   NC+  + + +  
Sbjct: 440 DMYAKCGSMQEAELVFSEMRVKDII-----SW-------NTIIGGYSKNCYANEALSLFN 487

Query: 604 LERLDGLLRDAGYSPDHSFV 623
           L     LL +  +SPD   V
Sbjct: 488 L-----LLEEKRFSPDERTV 502



 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 82/181 (45%), Gaps = 7/181 (3%)

Query: 353 GRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQ 412
           G++V   +  + F  D  + S L  MY  CGDL  A  +F+   ++  + WN ++   ++
Sbjct: 113 GKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAK 172

Query: 413 HGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFE-SMKCKYQVEPGI 471
            G    ++ +F+ M  SGV  D  +F  V  + S    V  G ++    +K  +     +
Sbjct: 173 SGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSV 232

Query: 472 EHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQ 531
            +   +V    +  +V+ A ++ ++M  E D I W S++     ++   LAE  +    Q
Sbjct: 233 GN--SLVAFYLKNQRVDSARKVFDEMT-ERDVISWNSIING---YVSNGLAEKGLSVFVQ 286

Query: 532 L 532
           +
Sbjct: 287 M 287


>AT1G25360.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:8894428-8896800 FORWARD
           LENGTH=790
          Length = 790

 Score =  432 bits (1111), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 240/708 (33%), Positives = 386/708 (54%), Gaps = 23/708 (3%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKN 81
           T  +S Y   G I  AR VF++ P   R T  +NAM+  +   +  + A+ LF     + 
Sbjct: 84  TTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEG 143

Query: 82  IVSWNGMVSGFVKN-GMVAEARRV---FDAMPVRNVVSWTSMVRGYV---------QEGN 128
               N   +  +    +VA+  +    F A  +++   + + V   +             
Sbjct: 144 FKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSL 203

Query: 129 VEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVK-DVVAVTNMIGGYCE 187
           +  A ++F  + EK+  SWT M+ G +K+   +   +L + M     +VA   MI GY  
Sbjct: 204 LHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVN 263

Query: 188 EGRLEEARALFDEMPKRNV----VTWTTMVSGYARNRRVDVARKLFEVMPERNEVSW--- 240
            G  +EA  +   M    +     T+ +++   A    + + +++   +  R + S+   
Sbjct: 264 RGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFD 323

Query: 241 TAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDG 300
            +++  Y   G+  EA   F+ MP K +V+ N ++ G+   G +  AK +F++M+E++  
Sbjct: 324 NSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNIL 383

Query: 301 TWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARL 360
           +W  MI      GF  E L LF+ M+REG                      +G+Q HA+L
Sbjct: 384 SWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQL 443

Query: 361 VRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEAL 420
           ++  FD  L   +ALITMY KCG +  A+ +F   P  D V WN++I    QHG G EA+
Sbjct: 444 LKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAV 503

Query: 421 NVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDL 480
           +V+ +M   G+ PD I+ + VL+ACS++G V +GR+ F+SM+  Y++ PG +HYA ++DL
Sbjct: 504 DVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDL 563

Query: 481 LGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPY 540
           L R+G+ +DA  ++E +P +P A +W +LL  CR H  ++L  +A +KL  L P++ G Y
Sbjct: 564 LCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTY 623

Query: 541 VLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPII 600
           +LLS+M+A+ G+WE+V  VR+ ++ R V K    SWIE+E + H F+  D+  HPE   +
Sbjct: 624 MLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFL-VDDTSHPEAEAV 682

Query: 601 MKMLERLDGLLRDAGYSPDHSFVLHDVEEE-EKTHSLGYHSEKLAIAYGLLKVPEGMPIR 659
              L+ L   +R  GY PD SFVLHDVE +  K   L  HSEK+A+A+GL+K+P G  IR
Sbjct: 683 YIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIR 742

Query: 660 VMKNLRVCGDCHSAIKLIAKVTGREIIVRDANRFHHFKDGYCSCKDYW 707
           + KNLR CGDCH+  + ++ V  R+II+RD  RFHHF++G CSC ++W
Sbjct: 743 IFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRFHHFRNGECSCGNFW 790



 Score = 94.4 bits (233), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 97/428 (22%), Positives = 174/428 (40%), Gaps = 78/428 (18%)

Query: 205 NVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMP 264
           N++T+      +  NR +DV                      Y  S  +  A + FD + 
Sbjct: 39  NIITFGFQPRAHILNRLIDV----------------------YCKSSELNYARQLFDEIS 76

Query: 265 VKPVVACNEMIMGFGFDGDVDRAKAVFEK--MRERDDGTWSAMIKVYERKGFELEALGLF 322
               +A   M+ G+   GD+  A+ VFEK  +  RD   ++AMI  +        A+ LF
Sbjct: 77  EPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLF 136

Query: 323 ARMQREG-AALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVK 381
            +M+ EG    NF                    Q HA  ++S       V++AL+++Y K
Sbjct: 137 CKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSK 196

Query: 382 CGD----LVRAKWIFNRYPLKD--------------------------------VVMWNS 405
           C      L  A+ +F+    KD                                +V +N+
Sbjct: 197 CASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNA 256

Query: 406 MITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKY 465
           MI+GY   G  +EAL + R M  SG+  D+ ++  V+ AC+ +G ++ G+++   +  + 
Sbjct: 257 MISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRRE 316

Query: 466 QVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVA 525
                 ++   +V L  + G+ ++A  I EKMP + D + W +LL    +   +  A++ 
Sbjct: 317 DFSFHFDN--SLVSLYYKCGKFDEARAIFEKMPAK-DLVSWNALLSGYVSSGHIGEAKLI 373

Query: 526 VEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHM 585
            +   +++ KN   ++++    A  G  E      E +K  S +K  G+     E   + 
Sbjct: 374 FK---EMKEKNILSWMIMISGLAENGFGE------EGLKLFSCMKREGF-----EPCDYA 419

Query: 586 FVGGDNNC 593
           F G   +C
Sbjct: 420 FSGAIKSC 427


>AT1G68930.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:25918314-25920545 FORWARD LENGTH=743
          Length = 743

 Score =  429 bits (1103), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 255/747 (34%), Positives = 389/747 (52%), Gaps = 63/747 (8%)

Query: 13  VQVRFQCTSTGA--ISRYARI--GQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPH 68
           VQ++ QC   GA   SRY ++  G I  A          +  T  +N +V AY       
Sbjct: 8   VQIK-QCIGLGARNQSRYVKMIHGNIIRALP--------YPETFLYNNIVHAYALMKSST 58

Query: 69  QAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGN 128
            A  +F+  P+ N+ SWN ++  + K G+++E    F+ +P R+ V+W  ++ GY   G 
Sbjct: 59  YARRVFDRIPQPNLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGL 118

Query: 129 VEEAERLFWRMPEKNVVSWT-VMLGGLLKDSRVEDARKLFDMMPVKDV--------VAVT 179
           V  A + +  M      + T V L  +LK S       L   +  + +        +  +
Sbjct: 119 VGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGS 178

Query: 180 NMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVS 239
            ++  Y   G + +A+ +F  +  RN V + +++ G      ++ A +LF  M E++ VS
Sbjct: 179 PLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGM-EKDSVS 237

Query: 240 WTAMLMGYTHSGRMREASEFF----------DAMPVKPVV-ACNEM------------IM 276
           W AM+ G   +G  +EA E F          D  P   V+ AC  +            I+
Sbjct: 238 WAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACII 297

Query: 277 GFGFDGDV----------------DRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALG 320
              F   +                  AK VF++M++++  +W+AM+  Y + G   EA+ 
Sbjct: 298 RTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVK 357

Query: 321 LFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYV 380
           +F  MQR G   +                 + G Q H + + S     + V+++L+T+Y 
Sbjct: 358 IFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYG 417

Query: 381 KCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIG 440
           KCGD+  +  +FN   ++D V W +M++ Y+Q G   E + +F  M   G+ PD ++  G
Sbjct: 418 KCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTG 477

Query: 441 VLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPME 500
           V+SACS +G V++G+  F+ M  +Y + P I HY+CM+DL  R+G++ +A+  +  MP  
Sbjct: 478 VISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFP 537

Query: 501 PDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVR 560
           PDAI W +LL ACR    L++ + A E L +L+P +   Y LLS +YASKG+W+ V  +R
Sbjct: 538 PDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLR 597

Query: 561 EKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDH 620
             ++ ++V K PG SWI+ + K H F   D+   P    I   LE L+  + D GY PD 
Sbjct: 598 RGMREKNVKKEPGQSWIKWKGKLHSF-SADDESSPYLDQIYAKLEELNNKIIDNGYKPDT 656

Query: 621 SFVLHDVEEEEKTHSLGYHSEKLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKV 680
           SFV HDVEE  K   L YHSE+LAIA+GL+ VP G PIRV KNLRVC DCH+A K I+ V
Sbjct: 657 SFVHHDVEEAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSV 716

Query: 681 TGREIIVRDANRFHHFKDGYCSCKDYW 707
           TGREI+VRDA RFH FKDG CSC D+W
Sbjct: 717 TGREILVRDAVRFHRFKDGTCSCGDFW 743



 Score = 80.1 bits (196), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 127/317 (40%), Gaps = 59/317 (18%)

Query: 8   LRVCMVQVRFQ---CTSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQA 64
           +  C+++  FQ      +  I  Y +   +  A+ VFD      +   SW AMV  Y Q 
Sbjct: 292 IHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQ--KNVVSWTAMVVGYGQT 349

Query: 65  HQPHQAVTLF-----------------ETTPEKNIVSW---------------------- 85
            +  +AV +F                   +   N+ S                       
Sbjct: 350 GRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVS 409

Query: 86  NGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVV 145
           N +V+ + K G + ++ R+F+ M VR+ VSWT+MV  Y Q G   E  +LF +M +  + 
Sbjct: 410 NSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLK 469

Query: 146 SWTVMLGGLL----KDSRVEDARKLFDMMP-----VKDVVAVTNMIGGYCEEGRLEEARA 196
              V L G++    +   VE  ++ F +M      V  +   + MI  +   GRLEEA  
Sbjct: 470 PDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMR 529

Query: 197 LFDEMP-KRNVVTWTTMVSGYARNRRVDV----ARKLFEVMPERNEVSWTAMLMGYTHSG 251
             + MP   + + WTT++S       +++    A  L E+ P  +   +T +   Y   G
Sbjct: 530 FINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPH-HPAGYTLLSSIYASKG 588

Query: 252 RMREASEFFDAMPVKPV 268
           +    ++    M  K V
Sbjct: 589 KWDSVAQLRRGMREKNV 605


>AT3G26782.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:9850594-9852682 FORWARD
           LENGTH=659
          Length = 659

 Score =  425 bits (1092), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 238/637 (37%), Positives = 361/637 (56%), Gaps = 58/637 (9%)

Query: 112 NVVSWTSMVRGYVQEGNVEEAERLFWRM------PEKNVVSWTVMLGGLLKD--SRVEDA 163
           +V SW S++    + G+  EA   F  M      P ++     +     L D  S  +  
Sbjct: 40  DVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTH 99

Query: 164 RKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVD 223
           ++ F      D+   + +I  Y   G+LE+AR +FDE+PKRN+V+WT+M+ GY  N    
Sbjct: 100 QQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNAL 159

Query: 224 VARKLF-EVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVV-ACN--------E 273
            A  LF +++ + N+                 + + F D+M +  V+ AC+        E
Sbjct: 160 DAVSLFKDLLVDEND----------------DDDAMFLDSMGLVSVISACSRVPAKGLTE 203

Query: 274 MIMGF----GFD------------------GDVDRAKAVFEKMRERDDGTWSAMIKVYER 311
            I  F    GFD                  G V  A+ +F+++ ++D  ++++++ VY +
Sbjct: 204 SIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQ 263

Query: 312 KGFELEALGLFARM-QREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLY 370
            G   EA  +F R+ + +    N                   G+ +H +++R   + D+ 
Sbjct: 264 SGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVI 323

Query: 371 VASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSG 430
           V +++I MY KCG +  A+  F+R   K+V  W +MI GY  HG   +AL +F  M  SG
Sbjct: 324 VGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSG 383

Query: 431 VPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDA 490
           V P+ I+F+ VL+ACS++G   EG   F +MK ++ VEPG+EHY CMVDLLGRAG +  A
Sbjct: 384 VRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKA 443

Query: 491 VEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASK 550
            +++++M M+PD+I+W SLL ACR H  ++LAE++V +L +L+  N G Y+LLSH+YA  
Sbjct: 444 YDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADA 503

Query: 551 GRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGL 610
           GRW+DVE VR  +K R ++K PG+S +E+  + H+F+ GD   HP++  I + L  L+  
Sbjct: 504 GRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEE-HPQREKIYEFLAELNRK 562

Query: 611 LRDAGYSPDHSFVLHDVEEEEKTHSLGYHSEKLAIAYGLLKVPEGMPIRVMKNLRVCGDC 670
           L +AGY  + S V HDV+EEEK  +L  HSEKLAIA+G++    G  + V+KNLRVC DC
Sbjct: 563 LLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDC 622

Query: 671 HSAIKLIAKVTGREIIVRDANRFHHFKDGYCSCKDYW 707
           H+ IKLI+K+  RE +VRDA RFHHFKDG CSC DYW
Sbjct: 623 HNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659



 Score =  109 bits (272), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 160/357 (44%), Gaps = 76/357 (21%)

Query: 20  TSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFET--- 76
            S+  I  Y+  G++E+ARKVFDE P   R   SW +M+  Y        AV+LF+    
Sbjct: 113 VSSALIVMYSTCGKLEDARKVFDEIPK--RNIVSWTSMIRGYDLNGNALDAVSLFKDLLV 170

Query: 77  -------------------------TPEKNIVS-----------------WNGMVSGFVK 94
                                     P K +                    N ++  + K
Sbjct: 171 DENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAK 230

Query: 95  NGM--VAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSW----- 147
            G   VA AR++FD +  ++ VS+ S++  Y Q G   EA  +F R+ +  VV++     
Sbjct: 231 GGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITL 290

Query: 148 -TVML-----GGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEM 201
            TV+L     G L     + D  ++  M    DV+  T++I  YC+ GR+E AR  FD M
Sbjct: 291 STVLLAVSHSGALRIGKCIHD--QVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRM 348

Query: 202 PKRNVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREAS 257
             +NV +WT M++GY  +     A +LF  M +     N +++ ++L   +H+G   E  
Sbjct: 349 KNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGW 408

Query: 258 EFFDAMP----VKPVV---ACNEMIMGFGFDGDVDRAKAVFEKMRERDDG-TWSAMI 306
            +F+AM     V+P +    C  M+   G  G + +A  + ++M+ + D   WS+++
Sbjct: 409 RWFNAMKGRFGVEPGLEHYGC--MVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLL 463



 Score = 98.2 bits (243), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 106/443 (23%), Positives = 175/443 (39%), Gaps = 75/443 (16%)

Query: 25  ISRYARIGQIENARKVFDETPHI--HRTTSSWNAMVAA------YFQAHQPHQAVTLFET 76
           I+  AR G    A   F     +  + T SS+   + A       F   Q HQ   +F  
Sbjct: 48  IADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGY 107

Query: 77  TPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLF 136
             + +I   + ++  +   G + +AR+VFD +P RN+VSWTSM+RGY   GN  +A  LF
Sbjct: 108 --QSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLF 165

Query: 137 WRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMI--GGYCEEGRLEEA 194
                            LL D   +D     D M +  V++  + +   G  E       
Sbjct: 166 ---------------KDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVI 210

Query: 195 RALFDEMPKRNVVTWTTMVSGYARNRR--VDVARKLFEVMPERNEVSWTAMLMGYTHSGR 252
           +  FD    R V    T++  YA+     V VARK+F+ + +++ VS+ +++  Y  SG 
Sbjct: 211 KRGFD----RGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGM 266

Query: 253 MREASEFFDAMPVKPVVACN------------------------EMIMGFGFDGDV---- 284
             EA E F  +    VV  N                        + ++  G + DV    
Sbjct: 267 SNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGT 326

Query: 285 ------------DRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAAL 332
                       + A+  F++M+ ++  +W+AMI  Y   G   +AL LF  M   G   
Sbjct: 327 SIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRP 386

Query: 333 NFPXXXXXXXXXXXXXXXDHG-RQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWI 391
           N+                  G R  +A   R   +  L     ++ +  + G L +A  +
Sbjct: 387 NYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDL 446

Query: 392 FNRYPLK-DVVMWNSMITGYSQH 413
             R  +K D ++W+S++     H
Sbjct: 447 IQRMKMKPDSIIWSSLLAACRIH 469


>AT2G29760.1 | Symbols: OTP81 | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:12712884-12715100 FORWARD
           LENGTH=738
          Length = 738

 Score =  424 bits (1089), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 250/699 (35%), Positives = 380/699 (54%), Gaps = 45/699 (6%)

Query: 24  AISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIV 83
           A++  +    +E ARKVFDE P     + +WN ++ AY     P  ++  F         
Sbjct: 70  AMAALSSFASLEYARKVFDEIPK--PNSFAWNTLIRAYASGPDPVLSIWAFL-------- 119

Query: 84  SWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKN 143
                        MV+E++      P  N  ++  +++   +  ++   + L   M  K+
Sbjct: 120 ------------DMVSESQ----CYP--NKYTFPFLIKAAAEVSSLSLGQSLHG-MAVKS 160

Query: 144 VVSWTVMLGGLL-----KDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALF 198
            V   V +   L         ++ A K+F  +  KDVV+  +MI G+ ++G  ++A  LF
Sbjct: 161 AVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELF 220

Query: 199 DEMPKRNV----VTWTTMVSGYARNRRVDVARKLFEVMPE-RNEVSWT---AMLMGYTHS 250
            +M   +V    VT   ++S  A+ R ++  R++   + E R  V+ T   AML  YT  
Sbjct: 221 KKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKC 280

Query: 251 GRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYE 310
           G + +A   FDAM  K  V    M+ G+    D + A+ V   M ++D   W+A+I  YE
Sbjct: 281 GSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYE 340

Query: 311 RKGFELEALGLFARMQ-REGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDL 369
           + G   EAL +F  +Q ++   LN                 + GR +H+ + +     + 
Sbjct: 341 QNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNF 400

Query: 370 YVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLS 429
           +V SALI MY KCGDL +++ +FN    +DV +W++MI G + HG G EA+++F  M  +
Sbjct: 401 HVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEA 460

Query: 430 GVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVND 489
            V P+ ++F  V  ACS++G V E   +F  M+  Y + P  +HYAC+VD+LGR+G +  
Sbjct: 461 NVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEK 520

Query: 490 AVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYAS 549
           AV+ +E MP+ P   VWG+LLGAC+ H  L+LAE+A  +L +LEP+N G +VLLS++YA 
Sbjct: 521 AVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAK 580

Query: 550 KGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDG 609
            G+WE+V  +R+ ++   + K PG S IE++   H F+ GD N HP    +   L  +  
Sbjct: 581 LGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGD-NAHPMSEKVYGKLHEVME 639

Query: 610 LLRDAGYSPDHSFVLHDVEEEE-KTHSLGYHSEKLAIAYGLLKVPEGMPIRVMKNLRVCG 668
            L+  GY P+ S VL  +EEEE K  SL  HSEKLAI YGL+       IRV+KNLRVCG
Sbjct: 640 KLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCG 699

Query: 669 DCHSAIKLIAKVTGREIIVRDANRFHHFKDGYCSCKDYW 707
           DCHS  KLI+++  REIIVRD  RFHHF++G CSC D+W
Sbjct: 700 DCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738



 Score = 98.2 bits (243), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 140/310 (45%), Gaps = 25/310 (8%)

Query: 20  TSTGAISRYARIGQIENARKV--FDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETT 77
           T  G +S  A+I  +E  R+V  + E   ++   +  NAM+  Y +      A  LF+  
Sbjct: 234 TMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAM 293

Query: 78  PEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFW 137
            EK+ V+W  M+ G+  +     AR V ++MP +++V+W +++  Y Q G   EA  +F 
Sbjct: 294 EEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFH 353

Query: 138 RMPEK-----NVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVV----AVTNMIGGYCEE 188
            +  +     N ++    L    +   +E  R +   +    +       + +I  Y + 
Sbjct: 354 ELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKC 413

Query: 189 GRLEEARALFDEMPKRNVVTWTTMVSGYAR----NRRVDVARKLFEVMPERNEVSWTAML 244
           G LE++R +F+ + KR+V  W+ M+ G A     N  VD+  K+ E   + N V++T + 
Sbjct: 414 GDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVF 473

Query: 245 MGYTHSGRMREASEFFDAM-------PVKPVVACNEMIMGFGFDGDVDRAKAVFEKMR-E 296
              +H+G + EA   F  M       P +   AC  ++   G  G +++A    E M   
Sbjct: 474 CACSHTGLVDEAESLFHQMESNYGIVPEEKHYAC--IVDVLGRSGYLEKAVKFIEAMPIP 531

Query: 297 RDDGTWSAMI 306
                W A++
Sbjct: 532 PSTSVWGALL 541


>AT1G11290.1 | Symbols: CRR22 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:3791454-3793883 REVERSE
           LENGTH=809
          Length = 809

 Score =  422 bits (1085), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 235/648 (36%), Positives = 361/648 (55%), Gaps = 28/648 (4%)

Query: 81  NIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMP 140
           ++ +  G+ + + K   V EAR+VFD MP R++VSW ++V GY Q G    A  +   M 
Sbjct: 169 DLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMC 228

Query: 141 EKNVVSWTVMLGGLL------------KDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEE 188
           E+N+    + +  +L            K+      R  FD +    V   T ++  Y + 
Sbjct: 229 EENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSL----VNISTALVDMYAKC 284

Query: 189 GRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYT 248
           G LE AR LFD M +RNVV+W +M+  Y +N     A  +F+ M +         +MG  
Sbjct: 285 GSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGAL 344

Query: 249 HS----GRMREASEFFDAMPV-----KPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDD 299
           H+    G + E   F   + V     + V   N +I  +    +VD A ++F K++ R  
Sbjct: 345 HACADLGDL-ERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTL 403

Query: 300 GTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHAR 359
            +W+AMI  + + G  ++AL  F++M+      +                  H + +H  
Sbjct: 404 VSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGV 463

Query: 360 LVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEA 419
           ++RS  D++++V +AL+ MY KCG ++ A+ IF+    + V  WN+MI GY  HG G+ A
Sbjct: 464 VMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAA 523

Query: 420 LNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVD 479
           L +F +M    + P+ ++F+ V+SACS+SG V+ G + F  MK  Y +E  ++HY  MVD
Sbjct: 524 LELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVD 583

Query: 480 LLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGP 539
           LLGRAG++N+A + + +MP++P   V+G++LGAC+ H  ++ AE A E+L +L P + G 
Sbjct: 584 LLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGY 643

Query: 540 YVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPI 599
           +VLL+++Y +   WE V  VR  +  + + K PG S +E++ + H F  G +  HP+   
Sbjct: 644 HVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSG-STAHPDSKK 702

Query: 600 IMKMLERLDGLLRDAGYSPDHSFVLHDVEEEEKTHSLGYHSEKLAIAYGLLKVPEGMPIR 659
           I   LE+L   +++AGY PD + VL  VE + K   L  HSEKLAI++GLL    G  I 
Sbjct: 703 IYAFLEKLICHIKEAGYVPDTNLVL-GVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIH 761

Query: 660 VMKNLRVCGDCHSAIKLIAKVTGREIIVRDANRFHHFKDGYCSCKDYW 707
           V KNLRVC DCH+A K I+ VTGREI+VRD  RFHHFK+G CSC DYW
Sbjct: 762 VRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809



 Score =  132 bits (333), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 112/477 (23%), Positives = 210/477 (44%), Gaps = 66/477 (13%)

Query: 117 TSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLF------DMM 170
           T +V  + + G+V+EA R+F  +  K  V +  ML G  K S ++ A + F      D+ 
Sbjct: 73  TKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVE 132

Query: 171 PV---------------------------------KDVVAVTNMIGGYCEEGRLEEARAL 197
           PV                                  D+ A+T +   Y +  ++ EAR +
Sbjct: 133 PVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKV 192

Query: 198 FDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNE----VSWTAMLMGYT----- 248
           FD MP+R++V+W T+V+GY++N    +A ++ + M E N     ++  ++L   +     
Sbjct: 193 FDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLI 252

Query: 249 ------HSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTW 302
                 H   MR     FD++    V     ++  +   G ++ A+ +F+ M ER+  +W
Sbjct: 253 SVGKEIHGYAMRSG---FDSL----VNISTALVDMYAKCGSLETARQLFDGMLERNVVSW 305

Query: 303 SAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVR 362
           ++MI  Y +     EA+ +F +M  EG                     + GR +H   V 
Sbjct: 306 NSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVE 365

Query: 363 SEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNV 422
              D+++ V ++LI+MY KC ++  A  +F +   + +V WN+MI G++Q+G   +ALN 
Sbjct: 366 LGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNY 425

Query: 423 FRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLG 482
           F  M    V PD  +++ V++A +        + I   +  +  ++  +     +VD+  
Sbjct: 426 FSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWI-HGVVMRSCLDKNVFVTTALVDMYA 484

Query: 483 RAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGP 539
           + G +  A  I + M  E     W +++    TH      + A+E   +++     P
Sbjct: 485 KCGAIMIARLIFDMMS-ERHVTTWNAMIDGYGTH---GFGKAALELFEEMQKGTIKP 537



 Score =  120 bits (300), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 159/362 (43%), Gaps = 59/362 (16%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKN 81
           TG  + YA+  Q+  ARKVFD  P   R   SWN +VA Y Q      A+ + ++  E+N
Sbjct: 174 TGLENMYAKCRQVNEARKVFDRMP--ERDLVSWNTIVAGYSQNGMARMALEMVKSMCEEN 231

Query: 82  I-------------------------VSWNGMVSGF--------------VKNGMVAEAR 102
           +                         +    M SGF               K G +  AR
Sbjct: 232 LKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETAR 291

Query: 103 RVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTV-MLGGLLKDSRVE 161
           ++FD M  RNVVSW SM+  YVQ  N +EA  +F +M ++ V    V ++G L   + + 
Sbjct: 292 QLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLG 351

Query: 162 DAR--KLFDMMPV-----KDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVS 214
           D    +    + V     ++V  V ++I  YC+   ++ A ++F ++  R +V+W  M+ 
Sbjct: 352 DLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMIL 411

Query: 215 GYARNRRVDVARKLFEVMPER----NEVSWTAML-----MGYTHSGRMREASEFFDAMPV 265
           G+A+N R   A   F  M  R    +  ++ +++     +  TH  +          +  
Sbjct: 412 GFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLD- 470

Query: 266 KPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARM 325
           K V     ++  +   G +  A+ +F+ M ER   TW+AMI  Y   GF   AL LF  M
Sbjct: 471 KNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEM 530

Query: 326 QR 327
           Q+
Sbjct: 531 QK 532



 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 144/331 (43%), Gaps = 29/331 (8%)

Query: 21  STGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEK 80
           ST  +  YA+ G +E AR++FD    + R   SWN+M+ AY Q   P +A+ +F+   ++
Sbjct: 274 STALVDMYAKCGSLETARQLFDGM--LERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDE 331

Query: 81  NI----VSWNGMVSGFVKNGMVAEARRVFDAMPV-----RNVVSWTSMVRGYVQEGNVEE 131
            +    VS  G +      G + E  R    + V     RNV    S++  Y +   V+ 
Sbjct: 332 GVKPTDVSVMGALHACADLGDL-ERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDT 390

Query: 132 AERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVK----DVVAVTNMIGGYCE 187
           A  +F ++  + +VSW  M+ G  ++ R  DA   F  M  +    D     ++I    E
Sbjct: 391 AASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAE 450

Query: 188 EGRLEEAR----ALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAM 243
                 A+     +      +NV   T +V  YA+   + +AR +F++M ER+  +W AM
Sbjct: 451 LSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAM 510

Query: 244 LMGYTHSGRMREASEFFDAM---PVKPV-VACNEMIMGFGFDGDVDRAKAVFEKMRERDD 299
           + GY   G  + A E F+ M    +KP  V    +I      G V+     F  M+E   
Sbjct: 511 IDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYS 570

Query: 300 -----GTWSAMIKVYERKGFELEALGLFARM 325
                  + AM+ +  R G   EA     +M
Sbjct: 571 IELSMDHYGAMVDLLGRAGRLNEAWDFIMQM 601



 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 148/330 (44%), Gaps = 23/330 (6%)

Query: 23  GAISRYARIGQIENARKVFDETPHI--HRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEK 80
           GA+   A +G +E  R +   +  +   R  S  N++++ Y +  +   A ++F     +
Sbjct: 342 GALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSR 401

Query: 81  NIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNV----VSWTSMVRGYVQEGNVEEAE--- 133
            +VSWN M+ GF +NG   +A   F  M  R V     ++ S++    +      A+   
Sbjct: 402 TLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIH 461

Query: 134 -RLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLE 192
             +     +KNV   T ++    K   +  AR +FDMM  + V     MI GY   G  +
Sbjct: 462 GVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGK 521

Query: 193 EARALFDEMPKRNV----VTWTTMVSGYARNRRVDVARKLFEVMPERNEVS-----WTAM 243
            A  LF+EM K  +    VT+ +++S  + +  V+   K F +M E   +      + AM
Sbjct: 522 AALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAM 581

Query: 244 LMGYTHSGRMREASEFFDAMPVKPVVACNEMIMG-FGFDGDVDRAKAVFEKMRER--DDG 300
           +     +GR+ EA +F   MPVKP V     ++G      +V+ A+   E++ E   DDG
Sbjct: 582 VDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDG 641

Query: 301 TWSAMIKVYERKGFELEALG-LFARMQREG 329
            +  ++    R     E +G +   M R+G
Sbjct: 642 GYHVLLANIYRAASMWEKVGQVRVSMLRQG 671


>AT3G03580.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:860695-863343 REVERSE
           LENGTH=882
          Length = 882

 Score =  418 bits (1075), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 262/740 (35%), Positives = 392/740 (52%), Gaps = 62/740 (8%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVS 84
           +  Y+R+G +  AR+VFDE P   R   SWN++++ Y       +A+ ++       IV 
Sbjct: 148 VDMYSRMGLLTRARQVFDEMP--VRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVP 205

Query: 85  WNGMVSG---------FVKNG---------------------MVA---------EARRVF 105
            +  VS           VK G                     +VA         +ARRVF
Sbjct: 206 DSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVF 265

Query: 106 DAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWR-----MPEKNVVSWTVMLGGLLKDSRV 160
           D M VR+ VS+ +M+ GY++   VEE+ R+F        P+   VS  +   G L+D  +
Sbjct: 266 DEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQFKPDLLTVSSVLRACGHLRDLSL 325

Query: 161 EDARKLFDMMPVKDVV---AVTN-MIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGY 216
             A+ +++ M     V    V N +I  Y + G +  AR +F+ M  ++ V+W +++SGY
Sbjct: 326 --AKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGY 383

Query: 217 ARNRRVDVARKLFEVMPERNE-VSWTAMLMGYTHSGRMREA-------SEFFDAMPVKPV 268
            ++  +  A KLF++M    E       LM  + S R+ +        S    +     +
Sbjct: 384 IQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDL 443

Query: 269 VACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQRE 328
              N +I  +   G+V  +  +F  M   D  TW+ +I    R G     L +  +M++ 
Sbjct: 444 SVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKS 503

Query: 329 GAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRA 388
               +                   G+++H  L+R  ++ +L + +ALI MY KCG L  +
Sbjct: 504 EVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENS 563

Query: 389 KWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYS 448
             +F R   +DVV W  MI  Y  +G GE+AL  F DM  SG+ PD + FI ++ ACS+S
Sbjct: 564 SRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHS 623

Query: 449 GKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGS 508
           G V EG   FE MK  Y+++P IEHYAC+VDLL R+ +++ A E ++ MP++PDA +W S
Sbjct: 624 GLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWAS 683

Query: 509 LLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSV 568
           +L ACRT   ++ AE    ++ +L P + G  +L S+ YA+  +W+ V ++R+ +K + +
Sbjct: 684 VLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDKHI 743

Query: 569 IKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDV- 627
            K PGYSWIEV K  H+F  GD++  P+   I K LE L  L+   GY PD   V  ++ 
Sbjct: 744 TKNPGYSWIEVGKNVHVFSSGDDSA-PQSEAIYKSLEILYSLMAKEGYIPDPREVSQNLE 802

Query: 628 EEEEKTHSLGYHSEKLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIV 687
           EEEEK   +  HSE+LAIA+GLL    G P++VMKNLRVCGDCH   KLI+K+ GREI+V
Sbjct: 803 EEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCGDCHEVTKLISKIVGREILV 862

Query: 688 RDANRFHHFKDGYCSCKDYW 707
           RDANRFH FKDG CSCKD W
Sbjct: 863 RDANRFHLFKDGTCSCKDRW 882



 Score =  137 bits (344), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 137/600 (22%), Positives = 250/600 (41%), Gaps = 97/600 (16%)

Query: 57  MVAAYFQAHQPHQAVTLFE-TTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNV-- 113
           ++  Y    +P  ++++F   +P KN+  WN ++  F KNG+  EA   +  +    V  
Sbjct: 45  LIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSP 104

Query: 114 --VSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKD--SR---VEDARKL 166
              ++ S+++      + E  + ++ ++ +    S  + +G  L D  SR   +  AR++
Sbjct: 105 DKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFES-DLFVGNALVDMYSRMGLLTRARQV 163

Query: 167 FDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSG----------- 215
           FD MPV+D+V+  ++I GY   G  EEA  ++ E+    +V  +  VS            
Sbjct: 164 FDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVV 223

Query: 216 ----------------------------YARNRRVDVARKLFEVMPERNEVSWTAMLMGY 247
                                       Y + RR   AR++F+ M  R+ VS+  M+ GY
Sbjct: 224 KQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGY 283

Query: 248 THSGRMREASEFF---------DAMPVKPVV-AC-------------------------- 271
                + E+   F         D + V  V+ AC                          
Sbjct: 284 LKLEMVEESVRMFLENLDQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLEST 343

Query: 272 --NEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREG 329
             N +I  +   GD+  A+ VF  M  +D  +W+++I  Y + G  +EA+ LF  M    
Sbjct: 344 VRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIME 403

Query: 330 AALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAK 389
              +                   G+ +H+  ++S    DL V++ALI MY KCG++  + 
Sbjct: 404 EQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSL 463

Query: 390 WIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSG 449
            IF+     D V WN++I+   + G     L V   M  S V PD  +F+  L  C+   
Sbjct: 464 KIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLA 523

Query: 450 KVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSL 509
             + G+EI   +  ++  E  ++    ++++  + G + ++  + E+M    D + W  +
Sbjct: 524 AKRLGKEIHCCL-LRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRR-DVVTWTGM 581

Query: 510 LGACRTHMKLDLAEVAVEKLAQLEPKNAGP--YVLLSHMYAS--KGRWEDVEVVREKIKT 565
           + A   + +    E A+E  A +E     P   V ++ +YA    G  ++     EK+KT
Sbjct: 582 IYAYGMYGE---GEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKT 638



 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 3/164 (1%)

Query: 354 RQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRY-PLKDVVMWNSMITGYSQ 412
           R++HA ++    D   + +  LI  Y    +   +  +F R  P K+V +WNS+I  +S+
Sbjct: 24  RRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIRAFSK 83

Query: 413 HGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIE 472
           +GL  EAL  +  +  S V PD  +F  V+ AC+     + G  ++E +      E  + 
Sbjct: 84  NGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQI-LDMGFESDLF 142

Query: 473 HYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTH 516
               +VD+  R G +  A ++ ++MP+  D + W SL+    +H
Sbjct: 143 VGNALVDMYSRMGLLTRARQVFDEMPVR-DLVSWNSLISGYSSH 185


>AT1G08070.1 | Symbols: OTP82 | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:2514374-2516599 REVERSE
           LENGTH=741
          Length = 741

 Score =  417 bits (1071), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 240/656 (36%), Positives = 354/656 (53%), Gaps = 50/656 (7%)

Query: 101 ARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRV 160
           A  VF  +   N++ W +M RG+    +   A +L+  M    ++  +     +LK    
Sbjct: 87  AISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAK 146

Query: 161 EDARK--------LFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTM 212
             A K        +  +    D+   T++I  Y + GRLE+A  +FD+ P R+VV++T +
Sbjct: 147 SKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTAL 206

Query: 213 VSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAM---PVKP-- 267
           + GYA    ++ A+KLF+ +P ++ VSW AM+ GY  +G  +EA E F  M    V+P  
Sbjct: 207 IKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDE 266

Query: 268 ------VVAC----------------------------NEMIMGFGFDGDVDRAKAVFEK 293
                 V AC                            N +I  +   G+++ A  +FE+
Sbjct: 267 STMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFER 326

Query: 294 MRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHG 353
           +  +D  +W+ +I  Y       EAL LF  M R G   N                 D G
Sbjct: 327 LPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIG 386

Query: 354 RQVHARLVR--SEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYS 411
           R +H  + +          + ++LI MY KCGD+  A  +FN    K +  WN+MI G++
Sbjct: 387 RWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFA 446

Query: 412 QHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGI 471
            HG  + + ++F  M   G+ PDDI+F+G+LSACS+SG +  GR IF +M   Y++ P +
Sbjct: 447 MHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKL 506

Query: 472 EHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQ 531
           EHY CM+DLLG +G   +A E++  M MEPD ++W SLL AC+ H  ++L E   E L +
Sbjct: 507 EHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIK 566

Query: 532 LEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDN 591
           +EP+N G YVLLS++YAS GRW +V   R  +  + + K+PG S IE++   H F+ GD 
Sbjct: 567 IEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGD- 625

Query: 592 NCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDVEEEEKTHSLGYHSEKLAIAYGLLK 651
             HP    I  MLE ++ LL  AG+ PD S VL ++EEE K  +L +HSEKLAIA+GL+ 
Sbjct: 626 KFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLIS 685

Query: 652 VPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIVRDANRFHHFKDGYCSCKDYW 707
              G  + ++KNLRVC +CH A KLI+K+  REII RD  RFHHF+DG CSC DYW
Sbjct: 686 TKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741



 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 151/314 (48%), Gaps = 24/314 (7%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKN 81
           T  IS Y + G++E+A KVFD++PH  R   S+ A++  Y        A  LF+  P K+
Sbjct: 173 TSLISMYVQNGRLEDAHKVFDKSPH--RDVVSYTALIKGYASRGYIENAQKLFDEIPVKD 230

Query: 82  IVSWNGMVSGFVKNGMVAEARRVFDAMPVRNV----VSWTSMVRGYVQEGNVEEAERLFW 137
           +VSWN M+SG+ + G   EA  +F  M   NV     +  ++V    Q G++E   ++  
Sbjct: 231 VVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHL 290

Query: 138 RMPEKNVVSWTVMLGGLL----KDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEE 193
            + +    S   ++  L+    K   +E A  LF+ +P KDV++   +IGGY      +E
Sbjct: 291 WIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKE 350

Query: 194 ARALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMPER-----NEVSW-TAM 243
           A  LF EM +     N VT  +++   A    +D+ R +   + +R     N  S  T++
Sbjct: 351 ALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSL 410

Query: 244 LMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMR----ERDD 299
           +  Y   G +  A + F+++  K + + N MI GF   G  D +  +F +MR    + DD
Sbjct: 411 IDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDD 470

Query: 300 GTWSAMIKVYERKG 313
            T+  ++      G
Sbjct: 471 ITFVGLLSACSHSG 484



 Score =  122 bits (305), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 145/294 (49%), Gaps = 20/294 (6%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVV 114
            ++++ Y Q  +   A  +F+ +P +++VS+  ++ G+   G +  A+++FD +PV++VV
Sbjct: 173 TSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVV 232

Query: 115 SWTSMVRGYVQEGNVEEAERLFWRMPEKNV----VSWTVMLGGLLKDSRVEDARKLF--- 167
           SW +M+ GY + GN +EA  LF  M + NV     +   ++    +   +E  R++    
Sbjct: 233 SWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWI 292

Query: 168 -DMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVAR 226
            D     ++  V  +I  Y + G LE A  LF+ +P ++V++W T++ GY        A 
Sbjct: 293 DDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEAL 352

Query: 227 KLFEVMPER----NEVSWTAMLMGYTHSGRM---REASEFFDAMPVKPVVACN----EMI 275
            LF+ M       N+V+  ++L    H G +   R    + D   +K V   +     +I
Sbjct: 353 LLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKR-LKGVTNASSLRTSLI 411

Query: 276 MGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREG 329
             +   GD++ A  VF  +  +   +W+AMI  +   G    +  LF+RM++ G
Sbjct: 412 DMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIG 465


>AT3G12770.1 | Symbols: MEF22 | mitochondrial editing factor  22 |
           chr3:4057027-4059193 REVERSE LENGTH=694
          Length = 694

 Score =  415 bits (1067), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/633 (35%), Positives = 364/633 (57%), Gaps = 26/633 (4%)

Query: 96  GMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLL 155
           G +  AR+VFD +P   +  W +++RGY +  + ++A  ++  M    V   +     LL
Sbjct: 67  GDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLL 126

Query: 156 KD----SRVEDAR----KLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFD--EMPKRN 205
           K     S ++  R    ++F +    DV     +I  Y +  RL  AR +F+   +P+R 
Sbjct: 127 KACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERT 186

Query: 206 VVTWTTMVSGYARNRRVDVARKLFEVMPERN-EVSWTAM---LMGYT-----HSGRMREA 256
           +V+WT +VS YA+N     A ++F  M + + +  W A+   L  +T       GR   A
Sbjct: 187 IVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHA 246

Query: 257 SEFFDAMPVKP--VVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGF 314
           S     + ++P  +++ N M   +   G V  AK +F+KM+  +   W+AMI  Y + G+
Sbjct: 247 SVVKMGLEIEPDLLISLNTM---YAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGY 303

Query: 315 ELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASA 374
             EA+ +F  M  +    +                 +  R ++  + RS++  D++++SA
Sbjct: 304 AREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSA 363

Query: 375 LITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPD 434
           LI M+ KCG +  A+ +F+R   +DVV+W++MI GY  HG   EA++++R M   GV P+
Sbjct: 364 LIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPN 423

Query: 435 DISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIV 494
           D++F+G+L AC++SG V+EG   F  M   +++ P  +HYAC++DLLGRAG ++ A E++
Sbjct: 424 DVTFLGLLMACNHSGMVREGWWFFNRM-ADHKINPQQQHYACVIDLLGRAGHLDQAYEVI 482

Query: 495 EKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWE 554
           + MP++P   VWG+LL AC+ H  ++L E A ++L  ++P N G YV LS++YA+   W+
Sbjct: 483 KCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWD 542

Query: 555 DVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDA 614
            V  VR ++K + + K  G SW+EV  +   F  GD + HP    I + +E ++  L++ 
Sbjct: 543 RVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKS-HPRYEEIERQVEWIESRLKEG 601

Query: 615 GYSPDHSFVLHDVEEEEKTHSLGYHSEKLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAI 674
           G+  +    LHD+ +EE   +L  HSE++AIAYGL+  P+G P+R+ KNLR C +CH+A 
Sbjct: 602 GFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAAT 661

Query: 675 KLIAKVTGREIIVRDANRFHHFKDGYCSCKDYW 707
           KLI+K+  REI+VRD NRFHHFKDG CSC DYW
Sbjct: 662 KLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  141 bits (355), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 175/350 (50%), Gaps = 26/350 (7%)

Query: 178 VTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMP---- 233
           +T +I      G +  AR +FD++P+  +  W  ++ GY+RN     A  ++  M     
Sbjct: 56  ITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARV 115

Query: 234 ERNEVSWTAML-----MGYTHSGRMREASEF---FDAMPVKPVVACNEMIMGFGFDGDVD 285
             +  ++  +L     + +   GR   A  F   FDA     V   N +I  +     + 
Sbjct: 116 SPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDA----DVFVQNGLIALYAKCRRLG 171

Query: 286 RAKAVFE--KMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXX 343
            A+ VFE   + ER   +W+A++  Y + G  +EAL +F++M++     ++         
Sbjct: 172 SARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNA 231

Query: 344 XXXXXXXDHGRQVHARLVRS--EFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVV 401
                    GR +HA +V+   E + DL +  +L TMY KCG +  AK +F++    +++
Sbjct: 232 FTCLQDLKQGRSIHASVVKMGLEIEPDLLI--SLNTMYAKCGQVATAKILFDKMKSPNLI 289

Query: 402 MWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESM 461
           +WN+MI+GY+++G   EA+++F +M    V PD IS    +SAC+  G +++ R ++E +
Sbjct: 290 LWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYV 349

Query: 462 -KCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLL 510
            +  Y+ +  I   + ++D+  + G V  A  + ++  ++ D +VW +++
Sbjct: 350 GRSDYRDDVFIS--SALIDMFAKCGSVEGARLVFDR-TLDRDVVVWSAMI 396



 Score =  117 bits (294), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/349 (27%), Positives = 157/349 (44%), Gaps = 62/349 (17%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKN 81
            G I+ YA+  ++ +AR VF+  P   RT  SW A+V+AY Q  +P +A+ +F    + +
Sbjct: 158 NGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMD 217

Query: 82  I-VSWNGMVS--------------------------------------GFVKNGMVAEAR 102
           +   W  +VS                                       + K G VA A+
Sbjct: 218 VKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAK 277

Query: 103 RVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV----VSWTVMLGGLLKDS 158
            +FD M   N++ W +M+ GY + G   EA  +F  M  K+V    +S T  +    +  
Sbjct: 278 ILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVG 337

Query: 159 RVEDARKLFDMMPVK----DVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVS 214
            +E AR +++ +       DV   + +I  + + G +E AR +FD    R+VV W+ M+ 
Sbjct: 338 SLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIV 397

Query: 215 GYARNRRVDVARKLFEVMPER-----NEVSWTAMLMGYTHSGRMREASEFFDAM------ 263
           GY  + R   A  L+  M ER     N+V++  +LM   HSG +RE   FF+ M      
Sbjct: 398 GYGLHGRAREAISLYRAM-ERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMADHKIN 456

Query: 264 PVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGT-WSAMIKVYER 311
           P +   AC  +I   G  G +D+A  V + M  +   T W A++   ++
Sbjct: 457 PQQQHYAC--VIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKK 503



 Score =  107 bits (267), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 107/461 (23%), Positives = 190/461 (41%), Gaps = 67/461 (14%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFE------ 75
           T  I   +  G I  AR+VFD+ P        WNA++  Y + +    A+ ++       
Sbjct: 57  TKLIHASSSFGDITFARQVFDDLPRPQ--IFPWNAIIRGYSRNNHFQDALLMYSNMQLAR 114

Query: 76  ------TTP---------------------------EKNIVSWNGMVSGFVKNGMVAEAR 102
                 T P                           + ++   NG+++ + K   +  AR
Sbjct: 115 VSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSAR 174

Query: 103 RVFDAMPV--RNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV-VSWTVMLGGL----- 154
            VF+ +P+  R +VSWT++V  Y Q G   EA  +F +M + +V   W  ++  L     
Sbjct: 175 TVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTC 234

Query: 155 ---LKDSRVEDARKLFDMMPVK-DVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWT 210
              LK  R   A  +   + ++ D++   N +   C  G++  A+ LFD+M   N++ W 
Sbjct: 235 LQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKC--GQVATAKILFDKMKSPNLILWN 292

Query: 211 TMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAMPVK 266
            M+SGYA+N     A  +F  M  +    + +S T+ +      G + +A   ++ +   
Sbjct: 293 AMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRS 352

Query: 267 ----PVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLF 322
                V   + +I  F   G V+ A+ VF++  +RD   WSAMI  Y   G   EA+ L+
Sbjct: 353 DYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLY 412

Query: 323 ARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKC 382
             M+R G   N                   G     R+   + +      + +I +  + 
Sbjct: 413 RAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMADHKINPQQQHYACVIDLLGRA 472

Query: 383 GDLVRAKWIFNRYPLK-DVVMWNSMITGYSQH---GLGEEA 419
           G L +A  +    P++  V +W ++++   +H    LGE A
Sbjct: 473 GHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYA 513



 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 118/255 (46%), Gaps = 42/255 (16%)

Query: 354 RQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQH 413
           +Q+HARL+        ++ + LI      GD+  A+ +F+  P   +  WN++I GYS++
Sbjct: 38  KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRN 97

Query: 414 GLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESM------------ 461
              ++AL ++ +M L+ V PD  +F  +L ACS    ++ GR +   +            
Sbjct: 98  NHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQ 157

Query: 462 --------KCKY------------QVEPGIEHYACMVDLLGRAGQVNDAVEI---VEKMP 498
                   KC+               E  I  +  +V    + G+  +A+EI   + KM 
Sbjct: 158 NGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMD 217

Query: 499 MEPDAIVWGSLLGA--CRTHMKLDLA-EVAVEKLA-QLEPKNAGPYVLLSHMYASKGRWE 554
           ++PD +   S+L A  C   +K   +   +V K+  ++EP      + L+ MYA  G+  
Sbjct: 218 VKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPD---LLISLNTMYAKCGQVA 274

Query: 555 DVEVVREKIKTRSVI 569
             +++ +K+K+ ++I
Sbjct: 275 TAKILFDKMKSPNLI 289



 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 105/264 (39%), Gaps = 64/264 (24%)

Query: 28  YARIGQIENARKVFDE--TPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNI--- 82
           YA+ GQ+  A+ +FD+  +P++      WNAM++ Y +     +A+ +F     K++   
Sbjct: 267 YAKCGQVATAKILFDKMKSPNL----ILWNAMISGYAKNGYAREAIDMFHEMINKDVRPD 322

Query: 83  -VSWNGMVSG-----------------------------------FVKNGMVAEARRVFD 106
            +S    +S                                    F K G V  AR VFD
Sbjct: 323 TISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFD 382

Query: 107 AMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLL----KDSRVED 162
               R+VV W++M+ GY   G   EA  L+  M    V    V   GLL        V +
Sbjct: 383 RTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVRE 442

Query: 163 ARKLFDMMPVKDV-------VAVTNMIGGYCEEGRLEEARALFDEMP-KRNVVTWTTMVS 214
               F+ M    +         V +++G     G L++A  +   MP +  V  W  ++S
Sbjct: 443 GWWFFNRMADHKINPQQQHYACVIDLLG---RAGHLDQAYEVIKCMPVQPGVTVWGALLS 499

Query: 215 GYARNRRVDV----ARKLFEVMPE 234
              ++R V++    A++LF + P 
Sbjct: 500 ACKKHRHVELGEYAAQQLFSIDPS 523


>AT3G49142.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:18215788-18217848 REVERSE
           LENGTH=686
          Length = 686

 Score =  415 bits (1066), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 235/623 (37%), Positives = 348/623 (55%), Gaps = 39/623 (6%)

Query: 98  VAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV----VSWTVMLGG 153
           VA AR+VFD +P RNV+    M+R YV  G   E  ++F  M   NV     ++  +L  
Sbjct: 90  VASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKA 149

Query: 154 LLKDSRVEDARKLF---DMMPVKDVVAVTN-MIGGYCEEGRLEEARALFDEMPKRNVVTW 209
                 +   RK+      + +   + V N ++  Y + G L EAR + DEM +R+VV+W
Sbjct: 150 CSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSW 209

Query: 210 TTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVV 269
            ++V GYA+N+R D A ++   M E  ++S  A  M           +E           
Sbjct: 210 NSLVVGYAQNQRFDDALEVCREM-ESVKISHDAGTMASLLPAVSNTTTE----------- 257

Query: 270 ACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREG 329
                        +V   K +F KM ++   +W+ MI VY +    +EA+ L++RM+ +G
Sbjct: 258 -------------NVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADG 304

Query: 330 AALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAK 389
              +                   G+++H  + R +   +L + +ALI MY KCG L +A+
Sbjct: 305 FEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKAR 364

Query: 390 WIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSG 449
            +F     +DVV W +MI+ Y   G G +A+ +F  +  SG+ PD I+F+  L+ACS++G
Sbjct: 365 DVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAG 424

Query: 450 KVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSL 509
            ++EGR  F+ M   Y++ P +EH ACMVDLLGRAG+V +A   ++ M MEP+  VWG+L
Sbjct: 425 LLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGAL 484

Query: 510 LGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVI 569
           LGACR H   D+  +A +KL QL P+ +G YVLLS++YA  GRWE+V  +R  +K++ + 
Sbjct: 485 LGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLK 544

Query: 570 KLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDVEE 629
           K PG S +EV +  H F+ GD + HP+   I + L+ L   +++ GY PD    LHDVEE
Sbjct: 545 KNPGASNVEVNRIIHTFLVGDRS-HPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEE 603

Query: 630 EEKTHSLGYHSEKLAIAYGLLKVPE-----GMPIRVMKNLRVCGDCHSAIKLIAKVTGRE 684
           E+K   L  HSEKLAI + L+   E        IR+ KNLR+CGDCH A KLI+++T RE
Sbjct: 604 EDKETHLAVHSEKLAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSRE 663

Query: 685 IIVRDANRFHHFKDGYCSCKDYW 707
           II+RD NRFH F+ G CSC DYW
Sbjct: 664 IIIRDTNRFHVFRFGVCSCGDYW 686



 Score = 95.5 bits (236), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 95/408 (23%), Positives = 162/408 (39%), Gaps = 98/408 (24%)

Query: 17  FQCTSTGAIS---RYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTL 73
            +C S+  +     YA +  + +ARKVFDE P   R     N M+ +Y       + V +
Sbjct: 70  LRCNSSLGVKLMRAYASLKDVASARKVFDEIP--ERNVIIINVMIRSYVNNGFYGEGVKV 127

Query: 74  FETTPEKNI---------------------------------------VSWNGMVSGFVK 94
           F T    N+                                          NG+VS + K
Sbjct: 128 FGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGK 187

Query: 95  NGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEA---------------------- 132
            G ++EAR V D M  R+VVSW S+V GY Q    ++A                      
Sbjct: 188 CGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASL 247

Query: 133 ---------------ERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVK---- 173
                          + +F++M +K++VSW VM+G  +K++   +A +L+  M       
Sbjct: 248 LPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEP 307

Query: 174 DVVAVTNMIGGYCEEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLF 229
           D V++T+++    +   L   + +   + ++    N++    ++  YA+   ++ AR +F
Sbjct: 308 DAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVF 367

Query: 230 EVMPERNEVSWTAMLMGYTHSGRMREASEFF----DAMPVKPVVACNEMIMGFGFDGDVD 285
           E M  R+ VSWTAM+  Y  SGR  +A   F    D+  V   +A    +      G ++
Sbjct: 368 ENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLE 427

Query: 286 RAKAVFEKMRERDDGT-----WSAMIKVYERKGFELEALGLFARMQRE 328
             ++ F+ M +    T      + M+ +  R G   EA      M  E
Sbjct: 428 EGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSME 475



 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 134/299 (44%), Gaps = 23/299 (7%)

Query: 283 DVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARM---QREGAALNFPXXXX 339
           DV  A+ VF+++ ER+    + MI+ Y   GF  E + +F  M           FP    
Sbjct: 89  DVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLK 148

Query: 340 XXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKD 399
                        GR++H    +      L+V + L++MY KCG L  A+ + +    +D
Sbjct: 149 ACSCSGTIVI---GRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRD 205

Query: 400 VVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSG--KVKEGREI 457
           VV WNS++ GY+Q+   ++AL V R+M    +  D  +   +L A S +    V   +++
Sbjct: 206 VVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDM 265

Query: 458 FESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMP---MEPDAIVWGSLLGACR 514
           F  M  K  V      +  M+ +  +     +AVE+  +M     EPDA+   S+L AC 
Sbjct: 266 FFKMGKKSLVS-----WNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACG 320

Query: 515 THMKLDLAEVAVEKLAQLEPKNAGPYVLLSH----MYASKGRWEDVEVVREKIKTRSVI 569
               L L +   +    +E K   P +LL +    MYA  G  E    V E +K+R V+
Sbjct: 321 DTSALSLGK---KIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVV 376



 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 84/169 (49%), Gaps = 2/169 (1%)

Query: 354 RQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQH 413
           R VH+R++  +   +  +   L+  Y    D+  A+ +F+  P ++V++ N MI  Y  +
Sbjct: 59  RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118

Query: 414 GLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEH 473
           G   E + VF  MC   V PD  +F  VL ACS SG +  GR+I  S   K  +   +  
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSAT-KVGLSSTLFV 177

Query: 474 YACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLA 522
              +V + G+ G +++A  ++++M    D + W SL+     + + D A
Sbjct: 178 GNGLVSMYGKCGFLSEARLVLDEMSRR-DVVSWNSLVVGYAQNQRFDDA 225



 Score = 60.1 bits (144), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/275 (21%), Positives = 111/275 (40%), Gaps = 62/275 (22%)

Query: 49  RTTSSWNAMVAAYFQAHQPHQAVTLFETT------PEK---------------------- 80
           ++  SWN M+  Y +   P +AV L+         P+                       
Sbjct: 272 KSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKI 331

Query: 81  -----------NIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNV 129
                      N++  N ++  + K G + +AR VF+ M  R+VVSWT+M+  Y   G  
Sbjct: 332 HGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRG 391

Query: 130 EEAERLFWRMPEKNVV----SWTVMLGGLLKDSRVEDARKLFDMMP--------VKDVVA 177
            +A  LF ++ +  +V    ++   L        +E+ R  F +M         ++ +  
Sbjct: 392 CDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLAC 451

Query: 178 VTNMIGGYCEEGRLEEARALFDEMP-KRNVVTWTTMVSGYARNRRVDV----ARKLFEVM 232
           + +++G     G+++EA     +M  + N   W  ++     +   D+    A KLF++ 
Sbjct: 452 MVDLLG---RAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLA 508

Query: 233 PERNEVSWTAMLMG-YTHSGRMREASEFFDAMPVK 266
           PE++   +  +L   Y  +GR  E +   + M  K
Sbjct: 509 PEQS--GYYVLLSNIYAKAGRWEEVTNIRNIMKSK 541


>AT4G13650.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfamily
            protein | chr4:7939611-7942898 REVERSE LENGTH=1064
          Length = 1064

 Score =  412 bits (1059), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 246/746 (32%), Positives = 378/746 (50%), Gaps = 101/746 (13%)

Query: 55   NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAM------ 108
            NA+V+ YF       A  +F    +++ V++N +++G  + G   +A  +F  M      
Sbjct: 327  NALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLE 386

Query: 109  PVRNVVSWT--------SMVRG-------------------------YVQEGNVEEAERL 135
            P  N ++          ++ RG                         Y +  ++E A   
Sbjct: 387  PDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDY 446

Query: 136  FWRMPEKNVVSWTVML--GGLLKDSRVEDARKLFDMMPVKDVV----------------- 176
            F     +NVV W VML   GLL D R  ++ ++F  M ++++V                 
Sbjct: 447  FLETEVENVVLWNVMLVAYGLLDDLR--NSFRIFRQMQIEEIVPNQYTYPSILKTCIRLG 504

Query: 177  ----------------------AVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVS 214
                                    + +I  Y + G+L+ A  +      ++VV+WTTM++
Sbjct: 505  DLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIA 564

Query: 215  GYARNRRVDVARKLFEVMPER----------NEVSWTAMLMGYTHSGRMRE---ASEFFD 261
            GY +    D A   F  M +R          N VS  A L       ++      S F  
Sbjct: 565  GYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSS 624

Query: 262  AMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGL 321
             +P +     N ++  +   G ++ +   FE+    D+  W+A++  +++ G   EAL +
Sbjct: 625  DLPFQ-----NALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRV 679

Query: 322  FARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVK 381
            F RM REG   N                   G+QVHA + ++ +D +  V +ALI+MY K
Sbjct: 680  FVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAK 739

Query: 382  CGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGV 441
            CG +  A+  F     K+ V WN++I  YS+HG G EAL+ F  M  S V P+ ++ +GV
Sbjct: 740  CGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGV 799

Query: 442  LSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEP 501
            LSACS+ G V +G   FESM  +Y + P  EHY C+VD+L RAG ++ A E +++MP++P
Sbjct: 800  LSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKP 859

Query: 502  DAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVRE 561
            DA+VW +LL AC  H  +++ E A   L +LEP+++  YVLLS++YA   +W+  ++ R+
Sbjct: 860  DALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQ 919

Query: 562  KIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHS 621
            K+K + V K PG SWIEV+   H F  GD N HP    I +  + L     + GY  D  
Sbjct: 920  KMKEKGVKKEPGQSWIEVKNSIHSFYVGDQN-HPLADEIHEYFQDLTKRASEIGYVQDCF 978

Query: 622  FVLHDVEEEEKTHSLGYHSEKLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVT 681
             +L++++ E+K   +  HSEKLAI++GLL +P  +PI VMKNLRVC DCH+ IK ++KV+
Sbjct: 979  SLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVS 1038

Query: 682  GREIIVRDANRFHHFKDGYCSCKDYW 707
             REIIVRDA RFHHF+ G CSCKDYW
Sbjct: 1039 NREIIVRDAYRFHHFEGGACSCKDYW 1064



 Score =  153 bits (386), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 132/553 (23%), Positives = 225/553 (40%), Gaps = 66/553 (11%)

Query: 19  CTSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTP 78
           C S      Y   G +  A KVFDE P   RT  +WN M+      +   +   LF    
Sbjct: 121 CLSEKLFDFYLFKGDLYGAFKVFDEMPE--RTIFTWNKMIKELASRNLIGEVFGLFVRMV 178

Query: 79  EKNIVSWNGMVSG----------------------------------------FVKNGMV 98
            +N+    G  SG                                        + +NG V
Sbjct: 179 SENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFV 238

Query: 99  AEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVV----SWTVMLGGL 154
             ARRVFD + +++  SW +M+ G  +     EA RLF  M    ++    +++ +L   
Sbjct: 239 DLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSAC 298

Query: 155 LKDSRVEDARKLFDMMP----VKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWT 210
            K   +E   +L  ++       D      ++  Y   G L  A  +F  M +R+ VT+ 
Sbjct: 299 KKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYN 358

Query: 211 TMVSGYARNRRVDVARKLFEVM------PERNEVSWTAMLMGYTHSGRMREASEFFDAMP 264
           T+++G ++    + A +LF+ M      P+ N ++  ++++  +  G +    +   A  
Sbjct: 359 TLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLA--SLVVACSADGTLFRGQQ-LHAYT 415

Query: 265 VKPVVACNEMIMG-----FGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEAL 319
            K   A N  I G     +    D++ A   F +    +   W+ M+  Y        + 
Sbjct: 416 TKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSF 475

Query: 320 GLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMY 379
            +F +MQ E    N                 + G Q+H++++++ F  + YV S LI MY
Sbjct: 476 RIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMY 535

Query: 380 VKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFI 439
            K G L  A  I  R+  KDVV W +MI GY+Q+   ++AL  FR M   G+  D++   
Sbjct: 536 AKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLT 595

Query: 440 GVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPM 499
             +SAC+    +KEG++I  +  C       +     +V L  R G++ ++    E+   
Sbjct: 596 NAVSACAGLQALKEGQQI-HAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTE- 653

Query: 500 EPDAIVWGSLLGA 512
             D I W +L+  
Sbjct: 654 AGDNIAWNALVSG 666



 Score =  137 bits (344), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 105/405 (25%), Positives = 178/405 (43%), Gaps = 25/405 (6%)

Query: 125 QEGNVEEAERLFWRMPEKNVVSWTVMLGGLLK-DSRVEDARKLFDMMPV----KDVVAVT 179
           QE  ++  E    R P    + W  +L G LK +  +++ RKL   +       +     
Sbjct: 68  QEKRIDSVENRGIR-PNHQTLKW--LLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSE 124

Query: 180 NMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVS 239
            +   Y  +G L  A  +FDEMP+R + TW  M+   A    +     LF  M   N   
Sbjct: 125 KLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTP 184

Query: 240 WTAMLMGYTHSGRMREASEFFDAMPV-----------KPVVACNEMIMGFGFDGDVDRAK 288
                 G   +   R  S  FD +                V CN +I  +  +G VD A+
Sbjct: 185 NEGTFSGVLEA--CRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLAR 242

Query: 289 AVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXX 348
            VF+ +R +D  +W AMI    +   E EA+ LF  M   G                   
Sbjct: 243 RVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIE 302

Query: 349 XXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMIT 408
             + G Q+H  +++  F  D YV +AL+++Y   G+L+ A+ IF+    +D V +N++I 
Sbjct: 303 SLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLIN 362

Query: 409 GYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFE-SMKCKYQV 467
           G SQ G GE+A+ +F+ M L G+ PD  +   ++ ACS  G +  G+++   + K  +  
Sbjct: 363 GLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFAS 422

Query: 468 EPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGA 512
              IE    +++L  +   +  A++   +  +E + ++W  +L A
Sbjct: 423 NNKIE--GALLNLYAKCADIETALDYFLETEVE-NVVLWNVMLVA 464



 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 133/337 (39%), Gaps = 85/337 (25%)

Query: 12  MVQVRFQCTS---TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPH 68
           +++  FQ  +   +  I  YA++G+++ A  +        +   SW  M+A Y Q +   
Sbjct: 516 IIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDIL--IRFAGKDVVSWTTMIAGYTQYNFDD 573

Query: 69  QAVTLFETTPEKNIVS---------------------------------------WNGMV 89
           +A+T F    ++ I S                                        N +V
Sbjct: 574 KALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALV 633

Query: 90  SGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTV 149
           + + + G + E+   F+     + ++W ++V G+ Q GN EEA R+F RM  + + +   
Sbjct: 634 TLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNF 693

Query: 150 MLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTW 209
             G     S V+ A +  +M   K V AV     GY  E  +  A               
Sbjct: 694 TFG-----SAVKAASETANMKQGKQVHAVITKT-GYDSETEVCNA--------------- 732

Query: 210 TTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAM---PVK 266
             ++S YA+   +  A K F  +  +NEVSW A++  Y+  G   EA + FD M    V+
Sbjct: 733 --LISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVR 790

Query: 267 P--------VVACNEMIMGFGFDGDVDRAKAVFEKMR 295
           P        + AC+ +       G VD+  A FE M 
Sbjct: 791 PNHVTLVGVLSACSHI-------GLVDKGIAYFESMN 820


>AT4G33170.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:15995701-15998673 REVERSE
           LENGTH=990
          Length = 990

 Score =  407 bits (1047), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 232/645 (35%), Positives = 345/645 (53%), Gaps = 31/645 (4%)

Query: 86  NGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVV 145
           N +++ + K      AR VFD M  R+++SW S++ G  Q G   EA  LF ++    + 
Sbjct: 354 NSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLK 413

Query: 146 SWTVMLGGLLKD-SRVEDARKL--------FDMMPVKDVVAVTNMIGGYCEEGRLEEARA 196
                +  +LK  S + +   L          +  V D    T +I  Y     ++EA  
Sbjct: 414 PDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEI 473

Query: 197 LFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREA 256
           LF E    ++V W  M++GY ++       KLF +M ++ E S    L        + + 
Sbjct: 474 LF-ERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTL------ATVFKT 526

Query: 257 SEFFDAMPVKPVVACNEMIMGFGFD--------------GDVDRAKAVFEKMRERDDGTW 302
             F  A+     V    +  G+  D              GD+  A+  F+ +   DD  W
Sbjct: 527 CGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAW 586

Query: 303 SAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVR 362
           + MI      G E  A  +F++M+  G   +                 + GRQ+HA  ++
Sbjct: 587 TTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALK 646

Query: 363 SEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNV 422
                D +V ++L+ MY KCG +  A  +F R  + ++  WN+M+ G +QHG G+E L +
Sbjct: 647 LNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQL 706

Query: 423 FRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLG 482
           F+ M   G+ PD ++FIGVLSACS+SG V E  +   SM   Y ++P IEHY+C+ D LG
Sbjct: 707 FKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALG 766

Query: 483 RAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVL 542
           RAG V  A  ++E M ME  A ++ +LL ACR     +  +    KL +LEP ++  YVL
Sbjct: 767 RAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVL 826

Query: 543 LSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMK 602
           LS+MYA+  +W+++++ R  +K   V K PG+SWIEV+ K H+FV  D+  + +  +I +
Sbjct: 827 LSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFV-VDDRSNRQTELIYR 885

Query: 603 MLERLDGLLRDAGYSPDHSFVLHDVEEEEKTHSLGYHSEKLAIAYGLLKVPEGMPIRVMK 662
            ++ +   ++  GY P+  F L DVEEEEK  +L YHSEKLA+A+GLL  P   PIRV+K
Sbjct: 886 KVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIK 945

Query: 663 NLRVCGDCHSAIKLIAKVTGREIIVRDANRFHHFKDGYCSCKDYW 707
           NLRVCGDCH+A+K IAKV  REI++RDANRFH FKDG CSC DYW
Sbjct: 946 NLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990



 Score =  155 bits (392), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 124/526 (23%), Positives = 246/526 (46%), Gaps = 49/526 (9%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTL---FETT---P 78
           ++ Y + G+++  + +F+E P+  R    WN M+ AY +     +A+ L   F ++   P
Sbjct: 187 VNIYLKFGKVKEGKVLFEEMPY--RDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNP 244

Query: 79  EKNIVSWNGMVSGFVKN-GMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFW 137
            +  +     +SG   + G V       DA  V  ++     +  Y+  G      + F 
Sbjct: 245 NEITLRLLARISGDDSDAGQVKSFANGNDASSVSEIIFRNKGLSEYLHSGQYSALLKCFA 304

Query: 138 RMPEKNV----VSWTVMLGGLLKDSRVEDARKLFDM---MPVKDVVAVTN-MIGGYCEEG 189
            M E +V    V++ +ML   +K   +   +++  M   + +  ++ V+N +I  YC+  
Sbjct: 305 DMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLR 364

Query: 190 RLEEARALFDEMPKRNVVTWTTMVSGYARN----RRVDVARKLFEVMPERNEVSWTAMLM 245
           +   AR +FD M +R++++W ++++G A+N      V +  +L     + ++ + T++L 
Sbjct: 365 KFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLK 424

Query: 246 G--------------YTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVF 291
                          + H+ ++   S+ F             +I  +  +  +  A+ +F
Sbjct: 425 AASSLPEGLSLSKQVHVHAIKINNVSDSF---------VSTALIDAYSRNRCMKEAEILF 475

Query: 292 EKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXD 351
           E+    D   W+AM+  Y +     + L LFA M ++G   +                 +
Sbjct: 476 ER-HNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAIN 534

Query: 352 HGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYS 411
            G+QVHA  ++S +D DL+V+S ++ MYVKCGD+  A++ F+  P+ D V W +MI+G  
Sbjct: 535 QGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCI 594

Query: 412 QHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIF-ESMKCKYQVEPG 470
           ++G  E A +VF  M L GV PD+ +   +  A S    +++GR+I   ++K     +P 
Sbjct: 595 ENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPF 654

Query: 471 IEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTH 516
           +     +VD+  + G ++DA  + +++ M  +   W ++L     H
Sbjct: 655 VG--TSLVDMYAKCGSIDDAYCLFKRIEM-MNITAWNAMLVGLAQH 697



 Score =  124 bits (311), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 101/399 (25%), Positives = 175/399 (43%), Gaps = 53/399 (13%)

Query: 68  HQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEG 127
           H  +  FE  PE+ ++  N ++S + K G +  ARRVFD MP R++VSW S++  Y Q  
Sbjct: 62  HARILTFEENPERFLI--NNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSS 119

Query: 128 -----NVEEAERLFWRMPEKNVVSWTVMLGGLLK---DSRVEDARKLFDMMPVK-----D 174
                N+++A  LF  + +  V +  + L  +LK    S    A + F     K     D
Sbjct: 120 ECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGD 179

Query: 175 VVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYA----RNRRVDVARKLFE 230
                 ++  Y + G+++E + LF+EMP R+VV W  M+  Y     +   +D++     
Sbjct: 180 EFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHS 239

Query: 231 VMPERNEVS--WTAMLMG-YTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRA 287
                NE++    A + G  + +G+++  +   DA  V  ++  N+ +  +   G     
Sbjct: 240 SGLNPNEITLRLLARISGDDSDAGQVKSFANGNDASSVSEIIFRNKGLSEYLHSGQYSAL 299

Query: 288 KAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXX 347
              F  M E D         +      ++++L L                          
Sbjct: 300 LKCFADMVESDVECDQVTFILMLATAVKVDSLAL-------------------------- 333

Query: 348 XXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMI 407
                G+QVH   ++   D  L V+++LI MY K      A+ +F+    +D++ WNS+I
Sbjct: 334 -----GQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVI 388

Query: 408 TGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACS 446
            G +Q+GL  EA+ +F  +   G+ PD  +   VL A S
Sbjct: 389 AGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAAS 427



 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 98/193 (50%), Gaps = 12/193 (6%)

Query: 353 GRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQ 412
           G+  HAR++  E + + ++ + LI+MY KCG L  A+ +F++ P +D+V WNS++  Y+Q
Sbjct: 58  GKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQ 117

Query: 413 HGLG-----EEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQV 467
                    ++A  +FR +    V    ++   +L  C +SG V    E F    CK  +
Sbjct: 118 SSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYV-WASESFHGYACKIGL 176

Query: 468 EPGIEHYA-CMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAV 526
           + G E  A  +V++  + G+V +   + E+MP   D ++W  +L A   ++++   E A+
Sbjct: 177 D-GDEFVAGALVNIYLKFGKVKEGKVLFEEMPYR-DVVLWNLMLKA---YLEMGFKEEAI 231

Query: 527 EKLAQLEPKNAGP 539
           +  +        P
Sbjct: 232 DLSSAFHSSGLNP 244



 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 116/289 (40%), Gaps = 68/289 (23%)

Query: 21  STGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEK 80
           ST  I  Y+R   ++ A  +F+     +    +WNAM+A Y Q+H  H+ + LF    ++
Sbjct: 455 STALIDAYSRNRCMKEAEILFERH---NFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQ 511

Query: 81  -------------------------------------NIVSW--NGMVSGFVKNGMVAEA 101
                                                ++  W  +G++  +VK G ++ A
Sbjct: 512 GERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAA 571

Query: 102 RRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVE 161
           +  FD++PV + V+WT+M+ G ++ G  E A  +F +M    V+     +  L K S   
Sbjct: 572 QFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCL 631

Query: 162 DARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRR 221
            A                       E+GR   A AL         V  T++V  YA+   
Sbjct: 632 TA----------------------LEQGRQIHANALKLNCTNDPFVG-TSLVDMYAKCGS 668

Query: 222 VDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMP---VKP 267
           +D A  LF+ +   N  +W AML+G    G  +E  + F  M    +KP
Sbjct: 669 IDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKP 717


>AT4G37380.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:17572040-17573938 REVERSE
           LENGTH=632
          Length = 632

 Score =  406 bits (1043), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/563 (38%), Positives = 316/563 (56%), Gaps = 42/563 (7%)

Query: 184 GYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLF------EVMPERNE 237
            Y   G++  + ALF +    ++  +T  ++  + N   D A  L+      E+ P  NE
Sbjct: 73  AYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINP--NE 130

Query: 238 VSWTAMLMG-------------------------------YTHSGRMREASEFFDAMPVK 266
            +++++L                                 Y   G +  A + FD MP +
Sbjct: 131 FTFSSLLKSCSTKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPER 190

Query: 267 PVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQ 326
            +V+   MI  +   G+V+ A+A+F+ M ERD  +W+ MI  Y + GF  +AL LF ++ 
Sbjct: 191 SLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLL 250

Query: 327 REGAAL-NFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDL 385
            EG    +                 + GR +H  +  S    ++ V + LI MY KCG L
Sbjct: 251 AEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSL 310

Query: 386 VRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDM-CLSGVPPDDISFIGVLSA 444
             A  +FN  P KD+V WN+MI GY+ HG  ++AL +F +M  ++G+ P DI+FIG L A
Sbjct: 311 EEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQA 370

Query: 445 CSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAI 504
           C+++G V EG  IFESM  +Y ++P IEHY C+V LLGRAGQ+  A E ++ M M+ D++
Sbjct: 371 CAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSV 430

Query: 505 VWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIK 564
           +W S+LG+C+ H    L +   E L  L  KN+G YVLLS++YAS G +E V  VR  +K
Sbjct: 431 LWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMK 490

Query: 565 TRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVL 624
            + ++K PG S IE+E K H F  GD   H +   I  ML ++   ++  GY P+ + VL
Sbjct: 491 EKGIVKEPGISTIEIENKVHEFRAGDRE-HSKSKEIYTMLRKISERIKSHGYVPNTNTVL 549

Query: 625 HDVEEEEKTHSLGYHSEKLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGRE 684
            D+EE EK  SL  HSE+LAIAYGL+    G P+++ KNLRVC DCH+  KLI+K+TGR+
Sbjct: 550 QDLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRK 609

Query: 685 IIVRDANRFHHFKDGYCSCKDYW 707
           I++RD NRFHHF DG CSC D+W
Sbjct: 610 IVMRDRNRFHHFTDGSCSCGDFW 632



 Score =  106 bits (264), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 130/274 (47%), Gaps = 24/274 (8%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVV 114
             +V  Y +      A  +F+  PE+++VS   M++ + K G V  AR +FD+M  R++V
Sbjct: 165 TGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIV 224

Query: 115 SWTSMVRGYVQEGNVEEAERLFWRM-----PEKNVVSWTVMLGGLLKDSRVEDARKLFDM 169
           SW  M+ GY Q G   +A  LF ++     P+ + ++    L    +   +E  R +   
Sbjct: 225 SWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVF 284

Query: 170 MPVK----DVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVA 225
           +       +V   T +I  Y + G LEEA  +F++ P++++V W  M++GYA +     A
Sbjct: 285 VKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDA 344

Query: 226 RKLFEVMP-----ERNEVSWTAMLMGYTHSGRMREASEFFDAM----PVKPVV---ACNE 273
            +LF  M      +  ++++   L    H+G + E    F++M     +KP +    C  
Sbjct: 345 LRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGC-- 402

Query: 274 MIMGFGFDGDVDRAKAVFEKMR-ERDDGTWSAMI 306
           ++   G  G + RA    + M  + D   WS+++
Sbjct: 403 LVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVL 436



 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 145/318 (45%), Gaps = 18/318 (5%)

Query: 28  YARIGQIENARKVFDET--PHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVSW 85
           YA  G+I ++  +F +T  P +   T++ N       +       V L  +    N  ++
Sbjct: 74  YASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTF 133

Query: 86  NGMV-SGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV 144
           + ++ S   K+G +     +   + +   V+ T +V  Y + G+V  A+++F RMPE+++
Sbjct: 134 SSLLKSCSTKSGKLIHTHVLKFGLGIDPYVA-TGLVDVYAKGGDVVSAQKVFDRMPERSL 192

Query: 145 VSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEM--- 201
           VS T M+    K   VE AR LFD M  +D+V+   MI GY + G   +A  LF ++   
Sbjct: 193 VSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAE 252

Query: 202 --PKRNVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMRE 255
             PK + +T    +S  ++   ++  R +   +       N    T ++  Y+  G + E
Sbjct: 253 GKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEE 312

Query: 256 ASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMR-----ERDDGTWSAMIKVYE 310
           A   F+  P K +VA N MI G+   G    A  +F +M+     +  D T+   ++   
Sbjct: 313 AVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACA 372

Query: 311 RKGFELEALGLFARMQRE 328
             G   E + +F  M +E
Sbjct: 373 HAGLVNEGIRIFESMGQE 390



 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 11/164 (6%)

Query: 16  RFQCTSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLF- 74
           R   +ST  I+ YA+ G +E AR +FD      R   SWN M+  Y Q   P+ A+ LF 
Sbjct: 190 RSLVSSTAMITCYAKQGNVEAARALFDSM--CERDIVSWNVMIDGYAQHGFPNDALMLFQ 247

Query: 75  ----ETTPEKNIVSWNGMVSGFVKNGMVAEAR--RVF-DAMPVR-NVVSWTSMVRGYVQE 126
               E  P+ + ++    +S   + G +   R   VF  +  +R NV   T ++  Y + 
Sbjct: 248 KLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKC 307

Query: 127 GNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMM 170
           G++EEA  +F   P K++V+W  M+ G       +DA +LF+ M
Sbjct: 308 GSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEM 351



 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 11/134 (8%)

Query: 18  QCTSTGAISRYARIGQIENAR--KVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFE 75
           + T   A+S  ++IG +E  R   VF ++  I         ++  Y +     +AV +F 
Sbjct: 259 EITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFN 318

Query: 76  TTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAM-------PVRNVVSWTSMVRGYVQEGN 128
            TP K+IV+WN M++G+  +G   +A R+F+ M       P    +++   ++     G 
Sbjct: 319 DTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTD--ITFIGTLQACAHAGL 376

Query: 129 VEEAERLFWRMPEK 142
           V E  R+F  M ++
Sbjct: 377 VNEGIRIFESMGQE 390


>AT2G03880.1 | Symbols: REME1 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:1181560-1183452 FORWARD
           LENGTH=630
          Length = 630

 Score =  406 bits (1043), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/540 (39%), Positives = 324/540 (60%), Gaps = 18/540 (3%)

Query: 178 VTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNE 237
           V  +I  Y +   L +A  LFD+MP+RNV++WTTM+S Y++ +    A +L  +M  R+ 
Sbjct: 99  VNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLML-RDN 157

Query: 238 VSWTAMLMGYTHSGRMREASEFFDAMPV----------KPVVACNEMIMGFGFDGDVDRA 287
           V        YT+S  +R  +   D   +            V   + +I  F   G+ + A
Sbjct: 158 VRPNV----YTYSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDA 213

Query: 288 KAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXX 347
            +VF++M   D   W+++I  + +      AL LF RM+R G                  
Sbjct: 214 LSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGL 273

Query: 348 XXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMI 407
              + G Q H  +V+  +DQDL + +AL+ MY KCG L  A  +FN+   +DV+ W++MI
Sbjct: 274 ALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMI 331

Query: 408 TGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQV 467
           +G +Q+G  +EAL +F  M  SG  P+ I+ +GVL ACS++G +++G   F SMK  Y +
Sbjct: 332 SGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGI 391

Query: 468 EPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVE 527
           +P  EHY CM+DLLG+AG+++DAV+++ +M  EPDA+ W +LLGACR    + LAE A +
Sbjct: 392 DPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAK 451

Query: 528 KLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFV 587
           K+  L+P++AG Y LLS++YA+  +W+ VE +R +++ R + K PG SWIEV K+ H F+
Sbjct: 452 KVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFI 511

Query: 588 GGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDVEEEEKTHSLGYHSEKLAIAY 647
            GDN+ HP+   + K L +L   L   GY P+ +FVL D+E E+   SL +HSEKLA+A+
Sbjct: 512 IGDNS-HPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAF 570

Query: 648 GLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIVRDANRFHHFKDGYCSCKDYW 707
           GL+ +P    IR+ KNLR+CGDCH   KL +K+  R I++RD  R+HHF+DG CSC DYW
Sbjct: 571 GLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630



 Score =  112 bits (279), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 131/285 (45%), Gaps = 24/285 (8%)

Query: 61  YFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMV 120
           YF  H+P   +              N +++ +VK  ++ +A ++FD MP RNV+SWT+M+
Sbjct: 88  YFNGHRPMMFLV-------------NVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMI 134

Query: 121 RGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVK-----DV 175
             Y +    ++A  L   M   NV         +L+        ++     +K     DV
Sbjct: 135 SAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLESDV 194

Query: 176 VAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPER 235
              + +I  + + G  E+A ++FDEM   + + W +++ G+A+N R DVA +LF+ M   
Sbjct: 195 FVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRA 254

Query: 236 NEVSWTAMLMGYTHSGRMREASEFFDAMPV------KPVVACNEMIMGFGFDGDVDRAKA 289
             ++  A L     +       E      V      + ++  N ++  +   G ++ A  
Sbjct: 255 GFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALR 314

Query: 290 VFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNF 334
           VF +M+ERD  TWS MI    + G+  EAL LF RM+  G   N+
Sbjct: 315 VFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNY 359



 Score =  105 bits (263), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 142/336 (42%), Gaps = 58/336 (17%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNI-- 82
           I+ Y +   + +A ++FD+ P   R   SW  M++AY +     +A+ L       N+  
Sbjct: 103 INMYVKFNLLNDAHQLFDQMPQ--RNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRP 160

Query: 83  ---------VSWNGM-------------------------VSGFVKNGMVAEARRVFDAM 108
                     S NGM                         +  F K G   +A  VFD M
Sbjct: 161 NVYTYSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEM 220

Query: 109 PVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFD 168
              + + W S++ G+ Q    + A  LF RM     ++    L  +L+        +L  
Sbjct: 221 VTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGM 280

Query: 169 MMPV------KDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRV 222
              V      +D++    ++  YC+ G LE+A  +F++M +R+V+TW+TM+SG A+N   
Sbjct: 281 QAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYS 340

Query: 223 DVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAM-------PVKPVVAC 271
             A KLFE M       N ++   +L   +H+G + +   +F +M       PV+    C
Sbjct: 341 QEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGC 400

Query: 272 NEMIMGFGFDGDVDRAKAVFEKMR-ERDDGTWSAMI 306
             MI   G  G +D A  +  +M  E D  TW  ++
Sbjct: 401 --MIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLL 434



 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 85/162 (52%), Gaps = 21/162 (12%)

Query: 369 LYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCL 428
           +++ + LI MYVK   L  A  +F++ P ++V+ W +MI+ YS+  + ++AL +   M  
Sbjct: 96  MFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLR 155

Query: 429 SGVPPDDISFIGVLSACS--------YSGKVKEGREIFESMKCKYQVEPGIEHYACMVDL 480
             V P+  ++  VL +C+        + G +KEG            +E  +   + ++D+
Sbjct: 156 DNVRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEG------------LESDVFVRSALIDV 203

Query: 481 LGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLA 522
             + G+  DA+ + ++M +  DAIVW S++G    + + D+A
Sbjct: 204 FAKLGEPEDALSVFDEM-VTGDAIVWNSIIGGFAQNSRSDVA 244


>AT3G22690.2 | Symbols:  | INVOLVED IN: photosystem II assembly,
           regulation of chlorophyll biosynthetic process,
           photosystem I assembly, thylakoid membrane organization,
           RNA modification; LOCATED IN: chloroplast; EXPRESSED IN:
           13 plant structures; EXPRESSED DURING: LP.04 four leaves
           visible, 4 anthesis, petal differentiation and expansion
           stage, E expanded cotyledon stage, D bilateral stage;
           CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat
           (InterPro:IPR002885); BEST Arabidopsis thaliana protein
           match is: Tetratricopeptide repeat (TPR)-like
           superfamily protein (TAIR:AT2G29760.1). |
           chr3:8022006-8024534 REVERSE LENGTH=842
          Length = 842

 Score =  403 bits (1035), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 241/678 (35%), Positives = 355/678 (52%), Gaps = 52/678 (7%)

Query: 80  KNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM 139
           K++   N +V  + + G +  AR+VFD M  RNVVSWTSM+ GY +    ++A  LF+RM
Sbjct: 167 KDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRM 226

Query: 140 PEK-----NVVSWTVMLGGLLKDSRVEDARKLFDMM-----PVKDVVAVTNMIGGYCEEG 189
                   N V+   ++    K   +E   K++  +      V D++ V+ ++  Y +  
Sbjct: 227 VRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLM-VSALVDMYMKCN 285

Query: 190 RLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVM------PERNEV----- 238
            ++ A+ LFDE    N+     M S Y R      A  +F +M      P+R  +     
Sbjct: 286 AIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAIS 345

Query: 239 ------------------------SW----TAMLMGYTHSGRMREASEFFDAMPVKPVVA 270
                                   SW     A++  Y    R   A   FD M  K VV 
Sbjct: 346 SCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVT 405

Query: 271 CNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQ-REG 329
            N ++ G+  +G+VD A   FE M E++  +W+ +I    +     EA+ +F  MQ +EG
Sbjct: 406 WNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEG 465

Query: 330 AALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAK 389
              +                 D  + ++  + ++    D+ + + L+ M+ +CGD   A 
Sbjct: 466 VNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAM 525

Query: 390 WIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSG 449
            IFN    +DV  W + I   +  G  E A+ +F DM   G+ PD ++F+G L+ACS+ G
Sbjct: 526 SIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGG 585

Query: 450 KVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSL 509
            V++G+EIF SM   + V P   HY CMVDLLGRAG + +AV+++E MPMEP+ ++W SL
Sbjct: 586 LVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSL 645

Query: 510 LGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVI 569
           L ACR    +++A  A EK+  L P+  G YVLLS++YAS GRW D+  VR  +K + + 
Sbjct: 646 LAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLR 705

Query: 570 KLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDVEE 629
           K PG S I++  K H F  GD + HPE P I  ML+ +       G+ PD S VL DV+E
Sbjct: 706 KPPGTSSIQIRGKTHEFTSGDES-HPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDE 764

Query: 630 EEKTHSLGYHSEKLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIVRD 689
           +EK   L  HSEKLA+AYGL+   +G  IR++KNLRVC DCHS  K  +KV  REII+RD
Sbjct: 765 KEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRD 824

Query: 690 ANRFHHFKDGYCSCKDYW 707
            NRFH+ + G CSC D+W
Sbjct: 825 NNRFHYIRQGKCSCGDFW 842



 Score =  128 bits (322), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 113/431 (26%), Positives = 182/431 (42%), Gaps = 50/431 (11%)

Query: 116 WTSMVRGYVQEGNVEEAERLFWRM------PEKNVVSW--TVMLGGLLKDSRVEDARKLF 167
           + S++RGY   G   EA  LF RM      P+K    +  +       K + ++    + 
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161

Query: 168 DMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARK 227
            M   KD+    +++  Y E G L+ AR +FDEM +RNVV+WT+M+ GYAR      A  
Sbjct: 162 KMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVD 221

Query: 228 LFEVMPERNEVSWTAMLMGYTHSGRMR----EASEFFDAMPVKPVVACNEMIMGFGFD-- 281
           LF  M    EV+  ++ M    S   +    E  E   A      +  N++++    D  
Sbjct: 222 LFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMY 281

Query: 282 ---GDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXX 338
                +D AK +F++    +    +AM   Y R+G   EALG+F  M   G   +     
Sbjct: 282 MKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISML 341

Query: 339 XXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLK 398
                         G+  H  ++R+ F+    + +ALI MY+KC     A  IF+R   K
Sbjct: 342 SAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNK 401

Query: 399 DVVMWNSMITGYSQHG-------------------------------LGEEALNVFRDM- 426
            VV WNS++ GY ++G                               L EEA+ VF  M 
Sbjct: 402 TVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQ 461

Query: 427 CLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQ 486
              GV  D ++ + + SAC + G +   + I+  ++ K  ++  +     +VD+  R G 
Sbjct: 462 SQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIE-KNGIQLDVRLGTTLVDMFSRCGD 520

Query: 487 VNDAVEIVEKM 497
              A+ I   +
Sbjct: 521 PESAMSIFNSL 531



 Score = 92.8 bits (229), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 151/313 (48%), Gaps = 28/313 (8%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVS 84
           I  Y +  + + A ++FD   +  +T  +WN++VA Y +  +   A   FET PEKNIVS
Sbjct: 379 IDMYMKCHRQDTAFRIFDRMSN--KTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVS 436

Query: 85  WNGMVSGFVKNGMVAEARRVFDAMPVR-----NVVSWTSMVRGYVQEGNVEEAERLFWRM 139
           WN ++SG V+  +  EA  VF +M  +     + V+  S+       G ++ A+ +++ +
Sbjct: 437 WNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYI 496

Query: 140 PEKNVVSWTVMLGGLLKD--SRV---EDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEA 194
            EKN +   V LG  L D  SR    E A  +F+ +  +DV A T  IG     G  E A
Sbjct: 497 -EKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERA 555

Query: 195 RALFDEMPKRNV----VTWTTMVSGYARNRRVDVARKLFEVMPERNEVS-----WTAMLM 245
             LFD+M ++ +    V +   ++  +    V   +++F  M + + VS     +  M+ 
Sbjct: 556 IELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVD 615

Query: 246 GYTHSGRMREASEFFDAMPVKPV-VACNEMIMGFGFDGDVDRAKAVFEKMR----ERDDG 300
               +G + EA +  + MP++P  V  N ++      G+V+ A    EK++    ER  G
Sbjct: 616 LLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPER-TG 674

Query: 301 TWSAMIKVYERKG 313
           ++  +  VY   G
Sbjct: 675 SYVLLSNVYASAG 687



 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 108/215 (50%), Gaps = 11/215 (5%)

Query: 287 AKAVFEKMRERDDGT---WSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXX 343
           AK VFE       GT   ++++I+ Y   G   EA+ LF RM   G + +          
Sbjct: 86  AKEVFENSESY--GTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSA 143

Query: 344 XXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMW 403
                   +G Q+H  +V+  + +DL+V ++L+  Y +CG+L  A+ +F+    ++VV W
Sbjct: 144 CAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSW 203

Query: 404 NSMITGYSQHGLGEEALNVFRDMCLS-GVPPDDISFIGVLSACSYSGKVKEGREIFESMK 462
            SMI GY++    ++A+++F  M     V P+ ++ + V+SAC+    ++ G +++  ++
Sbjct: 204 TSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIR 263

Query: 463 CKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKM 497
                  GIE    MV  L       +A+++ +++
Sbjct: 264 -----NSGIEVNDLMVSALVDMYMKCNAIDVAKRL 293


>AT3G08820.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:2677122-2679179 REVERSE
           LENGTH=685
          Length = 685

 Score =  402 bits (1033), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/544 (39%), Positives = 309/544 (56%), Gaps = 40/544 (7%)

Query: 203 KRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDA 262
             +V   T+++S Y+ + R++ A KLF+ +P+R+ V+WTA+  GYT SGR REA + F  
Sbjct: 143 NHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKK 202

Query: 263 M---PVKP--------VVAC----------------------------NEMIMGFGFDGD 283
           M    VKP        + AC                              ++  +   G 
Sbjct: 203 MVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGK 262

Query: 284 VDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXX 343
           +++A++VF+ M E+D  TWS MI+ Y    F  E + LF +M +E    +          
Sbjct: 263 MEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSS 322

Query: 344 XXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMW 403
                  D G    + + R EF  +L++A+ALI MY KCG + R   +F     KD+V+ 
Sbjct: 323 CASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIM 382

Query: 404 NSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKC 463
           N+ I+G +++G  + +  VF      G+ PD  +F+G+L  C ++G +++G   F ++ C
Sbjct: 383 NAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISC 442

Query: 464 KYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAE 523
            Y ++  +EHY CMVDL GRAG ++DA  ++  MPM P+AIVWG+LL  CR      LAE
Sbjct: 443 VYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAE 502

Query: 524 VAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKA 583
             +++L  LEP NAG YV LS++Y+  GRW++   VR+ +  + + K+PGYSWIE+E K 
Sbjct: 503 TVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKV 562

Query: 584 HMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDVEEEEKTHSLGYHSEKL 643
           H F+  D+  HP    I   LE L   +R  G+ P   FV  DVEEEEK   LGYHSEKL
Sbjct: 563 HEFL-ADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKL 621

Query: 644 AIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIVRDANRFHHFKDGYCSC 703
           A+A GL+    G  IRV+KNLRVCGDCH  +KLI+K+T REI+VRD NRFH F +G CSC
Sbjct: 622 AVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSC 681

Query: 704 KDYW 707
            DYW
Sbjct: 682 NDYW 685



 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 130/274 (47%), Gaps = 30/274 (10%)

Query: 81  NIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMP 140
           ++ +   ++S +  +G + +A ++FD +P R+VV+WT++  GY   G   EA  LF +M 
Sbjct: 145 DVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMV 204

Query: 141 EK----------NVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGR 190
           E            V+S  V +G L  DS     + + +M   K+    T ++  Y + G+
Sbjct: 205 EMGVKPDSYFIVQVLSACVHVGDL--DSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGK 262

Query: 191 LEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHS 250
           +E+AR++FD M ++++VTW+TM+ GYA N       +LF  M + N       ++G+  S
Sbjct: 263 MEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSS 322

Query: 251 G-------------RMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRER 297
                          + +  EF     +  +   N +I  +   G + R   VF++M+E+
Sbjct: 323 CASLGALDLGEWGISLIDRHEF-----LTNLFMANALIDMYAKCGAMARGFEVFKEMKEK 377

Query: 298 DDGTWSAMIKVYERKGFELEALGLFARMQREGAA 331
           D    +A I    + G    +  +F + ++ G +
Sbjct: 378 DIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGIS 411



 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/296 (21%), Positives = 129/296 (43%), Gaps = 57/296 (19%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLF------- 74
           T  +S Y+  G++ +A K+FDE P   R+  +W A+ + Y  + +  +A+ LF       
Sbjct: 150 TSLLSIYSGSGRLNDAHKLFDEIPD--RSVVTWTALFSGYTTSGRHREAIDLFKKMVEMG 207

Query: 75  --------------------------------ETTPEKNIVSWNGMVSGFVKNGMVAEAR 102
                                           E   +KN      +V+ + K G + +AR
Sbjct: 208 VKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKAR 267

Query: 103 RVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVED 162
            VFD+M  +++V+W++M++GY      +E   LF +M ++N+      + G L       
Sbjct: 268 SVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLG 327

Query: 163 ARKL----FDMMP----VKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVS 214
           A  L      ++     + ++     +I  Y + G +     +F EM ++++V     +S
Sbjct: 328 ALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAIS 387

Query: 215 GYARNRRVDVARKLF------EVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMP 264
           G A+N  V ++  +F       + P+ +  ++  +L G  H+G +++   FF+A+ 
Sbjct: 388 GLAKNGHVKLSFAVFGQTEKLGISPDGS--TFLGLLCGCVHAGLIQDGLRFFNAIS 441



 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 118/270 (43%), Gaps = 21/270 (7%)

Query: 52  SSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVR 111
           ++  ++++ Y  + + + A  LF+  P++++V+W  + SG+  +G   EA  +F  M   
Sbjct: 147 AAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEM 206

Query: 112 NV----VSWTSMVRGYVQEGNVEEAERLFWRMPE----KNVVSWTVMLGGLLKDSRVEDA 163
            V         ++   V  G+++  E +   M E    KN    T ++    K  ++E A
Sbjct: 207 GVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKA 266

Query: 164 RKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVD 223
           R +FD M  KD+V  + MI GY      +E   LF +M + N+      + G+  +    
Sbjct: 267 RSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASL 326

Query: 224 VARKLFE---VMPERNEVSWTAMLMG------YTHSGRMREASEFFDAMPVKPVVACNEM 274
            A  L E    + +R+E   T + M       Y   G M    E F  M  K +V  N  
Sbjct: 327 GALDLGEWGISLIDRHEF-LTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAA 385

Query: 275 IMGFGFDGDVDRAKAVF---EKMRERDDGT 301
           I G   +G V  + AVF   EK+    DG+
Sbjct: 386 ISGLAKNGHVKLSFAVFGQTEKLGISPDGS 415


>AT4G37170.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:17498580-17500655 REVERSE
           LENGTH=691
          Length = 691

 Score =  402 bits (1032), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/623 (34%), Positives = 342/623 (54%), Gaps = 45/623 (7%)

Query: 129 VEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMP----VKDVVAVTNMIGG 184
           + EA +L  R  +    ++  ++    +   +E+ +K+ + +     V  +V    ++  
Sbjct: 70  LREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRM 129

Query: 185 YCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAML 244
           Y + G L +AR +FDEMP R++ +W  MV+GYA    ++ ARKLF+ M E++  SWTAM+
Sbjct: 130 YAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMV 189

Query: 245 MGYTHSGRMREASEFFDAMPVKPVVACNEM------------------------IMGFGF 280
            GY    +  EA   +  M   P    N                          I+  G 
Sbjct: 190 TGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGL 249

Query: 281 DGD----------------VDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFAR 324
           D D                +D A+ +F+K+ E+D  +W++MI  Y +     E   LF+ 
Sbjct: 250 DSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSE 309

Query: 325 MQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGD 384
           +       N                 + G+QVH  + R  FD   + +S+L+ MY KCG+
Sbjct: 310 LVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGN 369

Query: 385 LVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSA 444
           +  AK + +  P  D+V W S+I G +Q+G  +EAL  F  +  SG  PD ++F+ VLSA
Sbjct: 370 IESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSA 429

Query: 445 CSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAI 504
           C+++G V++G E F S+  K+++    +HY C+VDLL R+G+      ++ +MPM+P   
Sbjct: 430 CTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVISEMPMKPSKF 489

Query: 505 VWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIK 564
           +W S+LG C T+  +DLAE A ++L ++EP+N   YV ++++YA+ G+WE+   +R++++
Sbjct: 490 LWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQ 549

Query: 565 TRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVL 624
              V K PG SW E+++K H+F+  D + HP    I++ L  L   +++ GY P  S VL
Sbjct: 550 EIGVTKRPGSSWTEIKRKRHVFIAADTS-HPMYNQIVEFLRELRKKMKEEGYVPATSLVL 608

Query: 625 HDVEEEEKTHSLGYHSEKLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGRE 684
           HDVE+E+K  +L YHSEKLA+A+ +L   EG  I+V KNLR C DCH AIK I+ +T R+
Sbjct: 609 HDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIKVFKNLRSCVDCHGAIKFISNITKRK 668

Query: 685 IIVRDANRFHHFKDGYCSCKDYW 707
           I VRD+ RFH F++G CSC DYW
Sbjct: 669 ITVRDSTRFHCFENGQCSCGDYW 691



 Score =  114 bits (286), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/427 (23%), Positives = 188/427 (44%), Gaps = 61/427 (14%)

Query: 82  IVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPE 141
           IV WN ++  + K G + +AR+VFD MP R++ SW  MV GY + G +EEA +LF  M E
Sbjct: 120 IVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTE 179

Query: 142 KNVVSWTVMLGGLLKDSRVEDARKLFDMM-----PVKDVVAVTNMIGGYCEEGRLEEARA 196
           K+  SWT M+ G +K  + E+A  L+ +M        ++  V+  +        +   + 
Sbjct: 180 KDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKE 239

Query: 197 LFDEMPKRNV----VTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGR 252
           +   + +  +    V W++++  Y +   +D AR +F+ + E++ VSWT+M+  Y  S R
Sbjct: 240 IHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSR 299

Query: 253 MREASEFFDAM---PVKP--------VVACNEM--------IMGF----GFD-------- 281
            RE    F  +     +P        + AC ++        + G+    GFD        
Sbjct: 300 WREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSS 359

Query: 282 --------GDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALN 333
                   G+++ AK V +   + D  +W+++I    + G   EAL  F  + + G   +
Sbjct: 360 LVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPD 419

Query: 334 FPXXXXXXXXXXXXXXXDHGRQVHARLV---RSEFDQDLYVASALITMYVKCGDLVRAKW 390
                            + G +    +    R     D Y  + L+ +  + G   + K 
Sbjct: 420 HVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHY--TCLVDLLARSGRFEQLKS 477

Query: 391 IFNRYPLK-DVVMWNSMITGYSQHG---LGEEALNVFRDMCLSGVPPDDISFIGVLSACS 446
           + +  P+K    +W S++ G S +G   L EEA      +     P + ++++ + +  +
Sbjct: 478 VISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKI----EPENPVTYVTMANIYA 533

Query: 447 YSGKVKE 453
            +GK +E
Sbjct: 534 AAGKWEE 540



 Score = 99.0 bits (245), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 135/300 (45%), Gaps = 54/300 (18%)

Query: 19  CTSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLF---- 74
           C+    ++ YA +G +E ARK+FDE     + + SW AMV  Y +  QP +A+ L+    
Sbjct: 152 CSWNVMVNGYAEVGLLEEARKLFDEM--TEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQ 209

Query: 75  ---ETTPEKNIVS---------------------------------WNGMVSGFVKNGMV 98
               + P    VS                                 W+ ++  + K G +
Sbjct: 210 RVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCI 269

Query: 99  AEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM----PEKNVVSWTVMLGGL 154
            EAR +FD +  ++VVSWTSM+  Y +     E   LF  +       N  ++  +L   
Sbjct: 270 DEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNAC 329

Query: 155 LKDSRVEDARKLFDMMPVKDV----VAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWT 210
              +  E  +++   M          A ++++  Y + G +E A+ + D  PK ++V+WT
Sbjct: 330 ADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWT 389

Query: 211 TMVSGYARNRRVDVARKLFEVM----PERNEVSWTAMLMGYTHSGRMREASEFFDAMPVK 266
           +++ G A+N + D A K F+++     + + V++  +L   TH+G + +  EFF ++  K
Sbjct: 390 SLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEK 449


>AT1G62260.1 | Symbols: MEF9 | mitochondrial editing factor 9 |
           chr1:22997826-22999796 REVERSE LENGTH=656
          Length = 656

 Score =  401 bits (1030), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/610 (35%), Positives = 338/610 (55%), Gaps = 59/610 (9%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVS 84
           +++  R G I  AR +F++     R T +WN M++ Y +  + +QA  LF+  P++++V+
Sbjct: 47  LNQMIRSGYIAEARDIFEKLEA--RNTVTWNTMISGYVKRREMNQARKLFDVMPKRDVVT 104

Query: 85  WNGMVSGFVKNG---MVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPE 141
           WN M+SG+V  G    + EAR++FD MP R+  SW +M+ GY +   + EA  LF +MPE
Sbjct: 105 WNTMISGYVSCGGIRFLEEARKLFDEMPSRDSFSWNTMISGYAKNRRIGEALLLFEKMPE 164

Query: 142 KNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKD--------------------------- 174
           +N VSW+ M+ G  ++  V+ A  LF  MPVKD                           
Sbjct: 165 RNAVSWSAMITGFCQNGEVDSAVVLFRKMPVKDSSPLCALVAGLIKNERLSEAAWVLGQY 224

Query: 175 ----------VVAVTNMIGGYCEEGRLEEARALFDEMPK---------------RNVVTW 209
                     V A   +I GY + G++E AR LFD++P                +NVV+W
Sbjct: 225 GSLVSGREDLVYAYNTLIVGYGQRGQVEAARCLFDQIPDLCGDDHGGEFRERFCKNVVSW 284

Query: 210 TTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVV 269
            +M+  Y +   V  AR LF+ M +R+ +SW  M+ GY H  RM +A   F  MP +   
Sbjct: 285 NSMIKAYLKVGDVVSARLLFDQMKDRDTISWNTMIDGYVHVSRMEDAFALFSEMPNRDAH 344

Query: 270 ACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREG 329
           + N M+ G+   G+V+ A+  FEK  E+   +W+++I  YE+     EA+ LF RM  EG
Sbjct: 345 SWNMMVSGYASVGNVELARHYFEKTPEKHTVSWNSIIAAYEKNKDYKEAVDLFIRMNIEG 404

Query: 330 AALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAK 389
              +                   G Q+H  +V++    D+ V +ALITMY +CG+++ ++
Sbjct: 405 EKPDPHTLTSLLSASTGLVNLRLGMQMHQIVVKTVI-PDVPVHNALITMYSRCGEIMESR 463

Query: 390 WIFNRYPLK-DVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYS 448
            IF+   LK +V+ WN+MI GY+ HG   EALN+F  M  +G+ P  I+F+ VL+AC+++
Sbjct: 464 RIFDEMKLKREVITWNAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVSVLNACAHA 523

Query: 449 GKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGS 508
           G V E +  F SM   Y++EP +EHY+ +V++    GQ  +A+ I+  MP EPD  VWG+
Sbjct: 524 GLVDEAKAQFVSMMSVYKIEPQMEHYSSLVNVTSGQGQFEEAMYIITSMPFEPDKTVWGA 583

Query: 509 LLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSV 568
           LL ACR +  + LA VA E +++LEP+++ PYVLL +MYA  G W++   VR  ++++ +
Sbjct: 584 LLDACRIYNNVGLAHVAAEAMSRLEPESSTPYVLLYNMYADMGLWDEASQVRMNMESKRI 643

Query: 569 IKLPGYSWIE 578
            K  G SW++
Sbjct: 644 KKERGSSWVD 653


>AT3G24000.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:8672774-8674881 FORWARD
           LENGTH=665
          Length = 665

 Score =  400 bits (1027), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 227/599 (37%), Positives = 337/599 (56%), Gaps = 50/599 (8%)

Query: 126 EGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGY 185
           EG+   A+R F+    K    + +++ G     R+  A  L  +    D+V    ++  Y
Sbjct: 52  EGSYIPADRRFYNTLLKKCTVFKLLIQG-----RIVHAHILQSIFR-HDIVMGNTLLNMY 105

Query: 186 CEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLM 245
            + G LEEAR +F++MP+R+ VTWTT++SGY+++ R   A   F  M          +  
Sbjct: 106 AKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQM----------LRF 155

Query: 246 GYTHSGRMREASEFFDAMPVKPVVA-----CNEMIMGF----GFDGDV------------ 284
           GY+        +EF  +  +K   A     C   + GF    GFD +V            
Sbjct: 156 GYS-------PNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTR 208

Query: 285 ----DRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXX 340
               D A+ VF+ +  R+D +W+A+I  + R+    +AL LF  M R+G   +       
Sbjct: 209 YGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASL 268

Query: 341 XXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDV 400
                     + G+ VHA +++S      +  + L+ MY K G +  A+ IF+R   +DV
Sbjct: 269 FGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDV 328

Query: 401 VMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFES 460
           V WNS++T Y+QHG G+EA+  F +M   G+ P++ISF+ VL+ACS+SG + EG   +E 
Sbjct: 329 VSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYEL 388

Query: 461 MKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLD 520
           MK K  + P   HY  +VDLLGRAG +N A+  +E+MP+EP A +W +LL ACR H   +
Sbjct: 389 MK-KDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTE 447

Query: 521 LAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVE 580
           L   A E + +L+P + GP+V+L ++YAS GRW D   VR+K+K   V K P  SW+E+E
Sbjct: 448 LGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIE 507

Query: 581 KKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDVEEEEKTHSLGYHS 640
              HMFV  D   HP++  I +  E +   +++ GY PD S V+  V+++E+  +L YHS
Sbjct: 508 NAIHMFVANDER-HPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHS 566

Query: 641 EKLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIVRDANRFHHFKDG 699
           EK+A+A+ LL  P G  I + KN+RVCGDCH+AIKL +KV GREIIVRD NRFHHFKD 
Sbjct: 567 EKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDA 625



 Score =  102 bits (254), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 85/384 (22%), Positives = 164/384 (42%), Gaps = 27/384 (7%)

Query: 73  LFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEA 132
           + ++    +IV  N +++ + K G + EAR+VF+ MP R+ V+WT+++ GY Q     +A
Sbjct: 86  ILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDA 145

Query: 133 ERLFWRMPEKNVVSWTVMLGGLLKDSRVED------------ARKLFDMMPVKDVVAVTN 180
              F +M           L  ++K +  E              +  FD     +V   + 
Sbjct: 146 LLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFD----SNVHVGSA 201

Query: 181 MIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPE---RNE 237
           ++  Y   G +++A+ +FD +  RN V+W  +++G+AR    + A +LF+ M     R  
Sbjct: 202 LLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPS 261

Query: 238 VSWTAMLMGYTHSGRMREASEFFDAMPVKP-----VVACNEMIMGFGFDGDVDRAKAVFE 292
               A L G   S    E  ++  A  +K        A N ++  +   G +  A+ +F+
Sbjct: 262 HFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFD 321

Query: 293 KMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDH 352
           ++ +RD  +W++++  Y + GF  EA+  F  M+R G   N                 D 
Sbjct: 322 RLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDE 381

Query: 353 GRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLK-DVVMWNSMITGYS 411
           G   +  + +     + +    ++ +  + GDL RA       P++    +W +++    
Sbjct: 382 GWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACR 441

Query: 412 QHGLGEEALNVFRDMCLSGVPPDD 435
            H   E  L  +    +  + PDD
Sbjct: 442 MHKNTE--LGAYAAEHVFELDPDD 463



 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 148/339 (43%), Gaps = 60/339 (17%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFET------TP 78
           ++ YA+ G +E ARKVF++ P   R   +W  +++ Y Q  +P  A+  F        +P
Sbjct: 102 LNMYAKCGSLEEARKVFEKMP--QRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSP 159

Query: 79  ---------------------------------EKNIVSWNGMVSGFVKNGMVAEARRVF 105
                                            + N+   + ++  + + G++ +A+ VF
Sbjct: 160 NEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVF 219

Query: 106 DAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV----VSWTVMLGGLLKDSRVE 161
           DA+  RN VSW +++ G+ +    E+A  LF  M          S+  + G       +E
Sbjct: 220 DALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLE 279

Query: 162 DARKLFDMMPVKD-----VVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGY 216
             + +   M +K        A   ++  Y + G + +AR +FD + KR+VV+W ++++ Y
Sbjct: 280 QGKWVHAYM-IKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAY 338

Query: 217 ARNRRVDVARKLFEVMP----ERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVA-- 270
           A++     A   FE M       NE+S+ ++L   +HSG + E   +++ M    +V   
Sbjct: 339 AQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEA 398

Query: 271 --CNEMIMGFGFDGDVDRAKAVFEKMR-ERDDGTWSAMI 306
                ++   G  GD++RA    E+M  E     W A++
Sbjct: 399 WHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALL 437


>AT1G16480.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:5625843-5628656 REVERSE
           LENGTH=937
          Length = 937

 Score =  399 bits (1025), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 228/739 (30%), Positives = 372/739 (50%), Gaps = 59/739 (7%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFE--------- 75
           IS    +G ++ A  +FD+     R T SWN++ AAY Q     ++  +F          
Sbjct: 202 ISMLGSMGNVDYANYIFDQMSE--RDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEV 259

Query: 76  -TTPEKNIVS---------WNGMVSGFVKN--------------------GMVAEARRVF 105
            +T    ++S         W   + G V                      G   EA  VF
Sbjct: 260 NSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVF 319

Query: 106 DAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEK----NVVSWTVMLGGLLKDSRVE 161
             MP ++++SW S++  +V +G   +A  L   M       N V++T  L         E
Sbjct: 320 KQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFE 379

Query: 162 DARKLFDMMPVKDV----VAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYA 217
             R L  ++ V  +    +    ++  Y + G + E+R +  +MP+R+VV W  ++ GYA
Sbjct: 380 KGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYA 439

Query: 218 RNRRVDVARKLFEVM----PERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNE 273
            +   D A   F+ M       N ++  ++L      G + E  +   A  V      +E
Sbjct: 440 EDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDE 499

Query: 274 -----MIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQRE 328
                +I  +   GD+  ++ +F  +  R+  TW+AM+      G   E L L ++M+  
Sbjct: 500 HVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSF 559

Query: 329 GAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRA 388
           G +L+                 + G+Q+H   V+  F+ D ++ +A   MY KCG++   
Sbjct: 560 GVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEV 619

Query: 389 KWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYS 448
             +      + +  WN +I+   +HG  EE    F +M   G+ P  ++F+ +L+ACS+ 
Sbjct: 620 VKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHG 679

Query: 449 GKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGS 508
           G V +G   ++ +   + +EP IEH  C++DLLGR+G++ +A   + KMPM+P+ +VW S
Sbjct: 680 GLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRS 739

Query: 509 LLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSV 568
           LL +C+ H  LD    A E L++LEP++   YVL S+M+A+ GRWEDVE VR+++  +++
Sbjct: 740 LLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNI 799

Query: 569 IKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDVE 628
            K    SW++++ K   F  GD   HP+   I   LE +  L++++GY  D S  L D +
Sbjct: 800 KKKQACSWVKLKDKVSSFGIGDRT-HPQTMEIYAKLEDIKKLIKESGYVADTSQALQDTD 858

Query: 629 EEEKTHSLGYHSEKLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIVR 688
           EE+K H+L  HSE+LA+AY L+  PEG  +R+ KNLR+C DCHS  K +++V GR I++R
Sbjct: 859 EEQKEHNLWNHSERLALAYALMSTPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLR 918

Query: 689 DANRFHHFKDGYCSCKDYW 707
           D  RFHHF+ G CSCKDYW
Sbjct: 919 DQYRFHHFERGLCSCKDYW 937



 Score =  167 bits (422), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 135/559 (24%), Positives = 241/559 (43%), Gaps = 74/559 (13%)

Query: 21  STGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFE----- 75
           ST  +  Y   G +  +RKVF+E P   R   SW +++  Y    +P + + +++     
Sbjct: 97  STAILHLYGVYGLVSCSRKVFEEMPD--RNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGE 154

Query: 76  ----------------------------------TTPEKNIVSWNGMVSGFVKNGMVAEA 101
                                             +  E  +   N ++S     G V  A
Sbjct: 155 GVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYA 214

Query: 102 RRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM----PEKNVVSWTVMLGGLLKD 157
             +FD M  R+ +SW S+   Y Q G++EE+ R+F  M     E N  + + +L  L   
Sbjct: 215 NYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHV 274

Query: 158 SRVEDARKLFDM---MPVKDVVAVTN-MIGGYCEEGRLEEARALFDEMPKRNVVTWTTMV 213
              +  R +  +   M    VV V N ++  Y   GR  EA  +F +MP +++++W +++
Sbjct: 275 DHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLM 334

Query: 214 SGYARNRRVDVARKLFEVMPER----NEVSWTAMLMG-----YTHSGRMREASEFFDAMP 264
           + +  + R   A  L   M       N V++T+ L       +   GR+         + 
Sbjct: 335 ASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLF 394

Query: 265 VKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFAR 324
              ++  N ++  +G  G++  ++ V  +M  RD   W+A+I  Y       +AL  F  
Sbjct: 395 YNQIIG-NALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQT 453

Query: 325 MQREGAALNF-PXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCG 383
           M+ EG + N+                 + G+ +HA +V + F+ D +V ++LITMY KCG
Sbjct: 454 MRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCG 513

Query: 384 DLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLS 443
           DL  ++ +FN    ++++ WN+M+   + HG GEE L +   M   GV  D  SF   LS
Sbjct: 514 DLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLS 573

Query: 444 ACSYSGKVKEGREIFESMKCKYQVEPGIEH----YACMVDLLGRAGQVNDAVEIVEKMPM 499
           A +    ++EG+++         V+ G EH    +    D+  + G++    E+V+ +P 
Sbjct: 574 AAAKLAVLEEGQQLH-----GLAVKLGFEHDSFIFNAAADMYSKCGEIG---EVVKMLPP 625

Query: 500 EPDAIV--WGSLLGACRTH 516
             +  +  W  L+ A   H
Sbjct: 626 SVNRSLPSWNILISALGRH 644



 Score =  166 bits (420), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 137/551 (24%), Positives = 251/551 (45%), Gaps = 71/551 (12%)

Query: 28  YARIGQIENARKVFDETPHIHRTTSSWNAM------VAAYFQAHQPHQAVTLFETTPEK- 80
           Y + G+++ AR +FD  P   R   SWN M      V  Y +  +  + +      P   
Sbjct: 2   YTKFGRVKPARHLFDIMPV--RNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSF 59

Query: 81  ---NIVSWNG----------MVSGFVKN--------------------GMVAEARRVFDA 107
              ++V+  G           V GFV                      G+V+ +R+VF+ 
Sbjct: 60  VIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEE 119

Query: 108 MPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMP------EKNVVSWTVMLGGLLKDSRVE 161
           MP RNVVSWTS++ GY  +G  EE   ++  M        +N +S  +   GLLKD  + 
Sbjct: 120 MPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESL- 178

Query: 162 DARKLFDMM---PVKDVVAVTN-MIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYA 217
             R++   +    ++  +AV N +I      G ++ A  +FD+M +R+ ++W ++ + YA
Sbjct: 179 -GRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYA 237

Query: 218 RNRRVDVARKLFEVM----PERNEVSWTAML--MGYT-HSGRMREASEFFDAMPVKPVVA 270
           +N  ++ + ++F +M     E N  + + +L  +G+  H    R        M    VV 
Sbjct: 238 QNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVC 297

Query: 271 -CNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREG 329
            CN ++  +   G    A  VF++M  +D  +W++++  +   G  L+ALGL   M   G
Sbjct: 298 VCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSG 357

Query: 330 AALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAK 389
            ++N+                + GR +H  +V S    +  + +AL++MY K G++  ++
Sbjct: 358 KSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESR 417

Query: 390 WIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSG 449
            +  + P +DVV WN++I GY++    ++AL  F+ M + GV  + I+ + VLSAC   G
Sbjct: 418 RVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPG 477

Query: 450 KVKEGREIFESMKCKYQVEPGIEH----YACMVDLLGRAGQVNDAVEIVEKMPMEPDAIV 505
            + E  +   +    Y V  G E        ++ +  + G ++ + ++   +    + I 
Sbjct: 478 DLLERGKPLHA----YIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLD-NRNIIT 532

Query: 506 WGSLLGACRTH 516
           W ++L A   H
Sbjct: 533 WNAMLAANAHH 543



 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/348 (18%), Positives = 139/348 (39%), Gaps = 62/348 (17%)

Query: 18  QCTSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETT 77
           Q      +S Y +IG++  +R+V  + P   R   +WNA++  Y +   P +A+  F+T 
Sbjct: 397 QIIGNALVSMYGKIGEMSESRRVLLQMP--RRDVVAWNALIGGYAEDEDPDKALAAFQTM 454

Query: 78  PEKNIVS----------------------------------------WNGMVSGFVKNGM 97
             + + S                                         N +++ + K G 
Sbjct: 455 RVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGD 514

Query: 98  VAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV----VSWTVMLGG 153
           ++ ++ +F+ +  RN+++W +M+      G+ EE  +L  +M    V     S++  L  
Sbjct: 515 LSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSA 574

Query: 154 LLKDSRVEDARKLFDMMPVK-----DVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVT 208
             K + +E+ ++L   + VK     D          Y + G + E   +      R++ +
Sbjct: 575 AAKLAVLEEGQQLHG-LAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPS 633

Query: 209 WTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAMP 264
           W  ++S   R+   +     F  M E       V++ ++L   +H G + +   ++D + 
Sbjct: 634 WNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIA 693

Query: 265 ----VKPVVA-CNEMIMGFGFDGDVDRAKAVFEKMRER-DDGTWSAMI 306
               ++P +  C  +I   G  G +  A+    KM  + +D  W +++
Sbjct: 694 RDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLL 741



 Score = 62.8 bits (151), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 71/134 (52%), Gaps = 3/134 (2%)

Query: 378 MYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDIS 437
           MY K G +  A+ +F+  P+++ V WN+M++G  + GL  E +  FR MC  G+ P    
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 60

Query: 438 FIGVLSACSYSGKV-KEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEK 496
              +++AC  SG + +EG ++      K  +   +     ++ L G  G V+ + ++ E+
Sbjct: 61  IASLVTACGRSGSMFREGVQV-HGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEE 119

Query: 497 MPMEPDAIVWGSLL 510
           MP + + + W SL+
Sbjct: 120 MP-DRNVVSWTSLM 132


>AT3G22690.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Protein of
           unknown function DUF1685 (InterPro:IPR012881),
           Pentatricopeptide repeat (InterPro:IPR002885); BEST
           Arabidopsis thaliana protein match is: Tetratricopeptide
           repeat (TPR)-like superfamily protein
           (TAIR:AT2G29760.1); Has 49784 Blast hits to 14716
           proteins in 280 species: Archae - 2; Bacteria - 10;
           Metazoa - 107; Fungi - 167; Plants - 48594; Viruses - 0;
           Other Eukaryotes - 904 (source: NCBI BLink). |
           chr3:8021347-8024534 REVERSE LENGTH=938
          Length = 938

 Score =  399 bits (1024), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 240/677 (35%), Positives = 354/677 (52%), Gaps = 52/677 (7%)

Query: 80  KNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM 139
           K++   N +V  + + G +  AR+VFD M  RNVVSWTSM+ GY +    ++A  LF+RM
Sbjct: 167 KDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRM 226

Query: 140 PEK-----NVVSWTVMLGGLLKDSRVEDARKLFDMM-----PVKDVVAVTNMIGGYCEEG 189
                   N V+   ++    K   +E   K++  +      V D++ V+ ++  Y +  
Sbjct: 227 VRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLM-VSALVDMYMKCN 285

Query: 190 RLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVM------PERNEV----- 238
            ++ A+ LFDE    N+     M S Y R      A  +F +M      P+R  +     
Sbjct: 286 AIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAIS 345

Query: 239 ------------------------SW----TAMLMGYTHSGRMREASEFFDAMPVKPVVA 270
                                   SW     A++  Y    R   A   FD M  K VV 
Sbjct: 346 SCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVT 405

Query: 271 CNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQ-REG 329
            N ++ G+  +G+VD A   FE M E++  +W+ +I    +     EA+ +F  MQ +EG
Sbjct: 406 WNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEG 465

Query: 330 AALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAK 389
              +                 D  + ++  + ++    D+ + + L+ M+ +CGD   A 
Sbjct: 466 VNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAM 525

Query: 390 WIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSG 449
            IFN    +DV  W + I   +  G  E A+ +F DM   G+ PD ++F+G L+ACS+ G
Sbjct: 526 SIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGG 585

Query: 450 KVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSL 509
            V++G+EIF SM   + V P   HY CMVDLLGRAG + +AV+++E MPMEP+ ++W SL
Sbjct: 586 LVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSL 645

Query: 510 LGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVI 569
           L ACR    +++A  A EK+  L P+  G YVLLS++YAS GRW D+  VR  +K + + 
Sbjct: 646 LAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLR 705

Query: 570 KLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDVEE 629
           K PG S I++  K H F  GD + HPE P I  ML+ +       G+ PD S VL DV+E
Sbjct: 706 KPPGTSSIQIRGKTHEFTSGDES-HPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDE 764

Query: 630 EEKTHSLGYHSEKLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIVRD 689
           +EK   L  HSEKLA+AYGL+   +G  IR++KNLRVC DCHS  K  +KV  REII+RD
Sbjct: 765 KEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRD 824

Query: 690 ANRFHHFKDGYCSCKDY 706
            NRFH+ + G CSC D+
Sbjct: 825 NNRFHYIRQGKCSCGDF 841



 Score =  129 bits (323), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 113/431 (26%), Positives = 182/431 (42%), Gaps = 50/431 (11%)

Query: 116 WTSMVRGYVQEGNVEEAERLFWRM------PEKNVVSW--TVMLGGLLKDSRVEDARKLF 167
           + S++RGY   G   EA  LF RM      P+K    +  +       K + ++    + 
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161

Query: 168 DMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARK 227
            M   KD+    +++  Y E G L+ AR +FDEM +RNVV+WT+M+ GYAR      A  
Sbjct: 162 KMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVD 221

Query: 228 LFEVMPERNEVSWTAMLMGYTHSGRMR----EASEFFDAMPVKPVVACNEMIMGFGFD-- 281
           LF  M    EV+  ++ M    S   +    E  E   A      +  N++++    D  
Sbjct: 222 LFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMY 281

Query: 282 ---GDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXX 338
                +D AK +F++    +    +AM   Y R+G   EALG+F  M   G   +     
Sbjct: 282 MKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISML 341

Query: 339 XXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLK 398
                         G+  H  ++R+ F+    + +ALI MY+KC     A  IF+R   K
Sbjct: 342 SAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNK 401

Query: 399 DVVMWNSMITGYSQHG-------------------------------LGEEALNVFRDM- 426
            VV WNS++ GY ++G                               L EEA+ VF  M 
Sbjct: 402 TVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQ 461

Query: 427 CLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQ 486
              GV  D ++ + + SAC + G +   + I+  ++ K  ++  +     +VD+  R G 
Sbjct: 462 SQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIE-KNGIQLDVRLGTTLVDMFSRCGD 520

Query: 487 VNDAVEIVEKM 497
              A+ I   +
Sbjct: 521 PESAMSIFNSL 531



 Score = 93.2 bits (230), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 151/315 (47%), Gaps = 32/315 (10%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVS 84
           I  Y +  + + A ++FD   +  +T  +WN++VA Y +  +   A   FET PEKNIVS
Sbjct: 379 IDMYMKCHRQDTAFRIFDRMSN--KTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVS 436

Query: 85  WNGMVSGFVKNGMVAEARRVFDAMPVR-----NVVSWTSMVRGYVQEGNVEEAERLFWRM 139
           WN ++SG V+  +  EA  VF +M  +     + V+  S+       G ++ A+ +++ +
Sbjct: 437 WNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYI 496

Query: 140 PEKNVVSWTVMLGGLLKD--SRV---EDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEA 194
            EKN +   V LG  L D  SR    E A  +F+ +  +DV A T  IG     G  E A
Sbjct: 497 -EKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERA 555

Query: 195 RALFDEMPKRNV----VTWTTMVSGYARNRRVDVARKLFEVM-------PERNEVSWTAM 243
             LFD+M ++ +    V +   ++  +    V   +++F  M       PE  +V +  M
Sbjct: 556 IELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPE--DVHYGCM 613

Query: 244 LMGYTHSGRMREASEFFDAMPVKPV-VACNEMIMGFGFDGDVDRAKAVFEKMR----ERD 298
           +     +G + EA +  + MP++P  V  N ++      G+V+ A    EK++    ER 
Sbjct: 614 VDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPER- 672

Query: 299 DGTWSAMIKVYERKG 313
            G++  +  VY   G
Sbjct: 673 TGSYVLLSNVYASAG 687



 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 108/215 (50%), Gaps = 11/215 (5%)

Query: 287 AKAVFEKMRERDDGT---WSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXX 343
           AK VFE       GT   ++++I+ Y   G   EA+ LF RM   G + +          
Sbjct: 86  AKEVFENSESY--GTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSA 143

Query: 344 XXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMW 403
                   +G Q+H  +V+  + +DL+V ++L+  Y +CG+L  A+ +F+    ++VV W
Sbjct: 144 CAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSW 203

Query: 404 NSMITGYSQHGLGEEALNVFRDMCLS-GVPPDDISFIGVLSACSYSGKVKEGREIFESMK 462
            SMI GY++    ++A+++F  M     V P+ ++ + V+SAC+    ++ G +++  ++
Sbjct: 204 TSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIR 263

Query: 463 CKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKM 497
                  GIE    MV  L       +A+++ +++
Sbjct: 264 -----NSGIEVNDLMVSALVDMYMKCNAIDVAKRL 293


>AT4G14820.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:8507794-8510038 REVERSE
           LENGTH=722
          Length = 722

 Score =  395 bits (1016), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/564 (38%), Positives = 323/564 (57%), Gaps = 17/564 (3%)

Query: 159 RVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVV----TWTTMVS 214
           R+  AR +FD M  +DVV    MI  YC  G ++EA  LF+EM   NV+        +VS
Sbjct: 161 RINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVS 220

Query: 215 GYARNRRVDVARKLFEVMPERNEVS-----WTAMLMGYTHSGRMREASEFFDAMPVKPVV 269
              R   +   R ++E + E N+V       TA++  Y  +G M  A EFF  M V+ + 
Sbjct: 221 ACGRTGNMRYNRAIYEFLIE-NDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLF 279

Query: 270 ACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREG 329
               M+ G+   G +D A+ +F++  ++D   W+ MI  Y    +  EAL +F  M   G
Sbjct: 280 VSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSG 339

Query: 330 AALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAK 389
              +                 D  + VH+ +  +  + +L + +ALI MY KCG L   +
Sbjct: 340 IKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATR 399

Query: 390 WIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSG 449
            +F + P ++VV W+SMI   S HG   +AL++F  M    V P++++F+GVL  CS+SG
Sbjct: 400 DVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSG 459

Query: 450 KVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSL 509
            V+EG++IF SM  +Y + P +EHY CMVDL GRA  + +A+E++E MP+  + ++WGSL
Sbjct: 460 LVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSL 519

Query: 510 LGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVI 569
           + ACR H +L+L + A +++ +LEP + G  VL+S++YA + RWEDV  +R  ++ ++V 
Sbjct: 520 MSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVF 579

Query: 570 KLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDVEE 629
           K  G S I+   K+H F+ GD   H +   I   L+ +   L+ AGY PD   VL DVEE
Sbjct: 580 KEKGLSRIDQNGKSHEFLIGDKR-HKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEE 638

Query: 630 EEKTHSLGYHSEKLAIAYGLLKVPEGMP------IRVMKNLRVCGDCHSAIKLIAKVTGR 683
           EEK   + +HSEKLA+ +GL+   +         IR++KNLRVC DCH   KL++KV  R
Sbjct: 639 EEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVYER 698

Query: 684 EIIVRDANRFHHFKDGYCSCKDYW 707
           EIIVRD  RFH +K+G CSC+DYW
Sbjct: 699 EIIVRDRTRFHCYKNGLCSCRDYW 722



 Score =  112 bits (279), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 95/360 (26%), Positives = 153/360 (42%), Gaps = 58/360 (16%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKN 81
           TG +  YA  G+I  AR VFDE  H  R   +WN M+  Y +     +A  LFE   + N
Sbjct: 150 TGFMDMYASCGRINYARNVFDEMSH--RDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSN 207

Query: 82  IVS----WNGMVSGFVKNGMVAEARRVFDAMPVRNVVS----WTSMVRGYVQEGNVEEAE 133
           ++        +VS   + G +   R +++ +   +V       T++V  Y   G ++ A 
Sbjct: 208 VMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAR 267

Query: 134 RLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEE 193
             F +M  +N+   T M+ G  K  R++DA+ +FD    KD+V  T MI  Y E    +E
Sbjct: 268 EFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQE 327

Query: 194 ARALFDEMP----KRNVVTWTTMVSG---------------------------------- 215
           A  +F+EM     K +VV+  +++S                                   
Sbjct: 328 ALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALIN 387

Query: 216 -YARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPV----VA 270
            YA+   +D  R +FE MP RN VSW++M+   +  G   +A   F  M  + V    V 
Sbjct: 388 MYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVT 447

Query: 271 CNEMIMGFGFDGDVDRAKAVFEKMRERDDGT-----WSAMIKVYERKGFELEALGLFARM 325
              ++ G    G V+  K +F  M +  + T     +  M+ ++ R     EAL +   M
Sbjct: 448 FVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESM 507



 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 87/176 (49%), Gaps = 2/176 (1%)

Query: 353 GRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQ 412
           G ++H    +     D +V +  + MY  CG +  A+ +F+    +DVV WN+MI  Y +
Sbjct: 130 GMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCR 189

Query: 413 HGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIE 472
            GL +EA  +F +M  S V PD++    ++SAC  +G ++  R I+E +  +  V     
Sbjct: 190 FGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFL-IENDVRMDTH 248

Query: 473 HYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEK 528
               +V +   AG ++ A E   KM +  +  V  +++       +LD A+V  ++
Sbjct: 249 LLTALVTMYAGAGCMDMAREFFRKMSVR-NLFVSTAMVSGYSKCGRLDDAQVIFDQ 303


>AT2G35030.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:14761080-14762963 REVERSE
           LENGTH=627
          Length = 627

 Score =  395 bits (1015), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 206/568 (36%), Positives = 338/568 (59%), Gaps = 13/568 (2%)

Query: 69  QAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVR-NVVSWTSMVRGYVQEG 127
           +A  LF+  PE+++V+W  +++G++K G + EAR +FD +  R NVV+WT+MV GY++  
Sbjct: 64  EARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSRKNVVTWTAMVSGYLRSK 123

Query: 128 NVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCE 187
            +  AE LF  MPE+NVVSW  M+ G  +  R++ A +LFD MP +++V+  +M+    +
Sbjct: 124 QLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMPERNIVSWNSMVKALVQ 183

Query: 188 EGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGY 247
            GR++EA  LF+ MP+R+VV+WT MV G A+N +VD AR+LF+ MPERN +SW AM+ GY
Sbjct: 184 RGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPERNIISWNAMITGY 243

Query: 248 THSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIK 307
             + R+ EA + F  MP +   + N MI GF  + ++++A  +F++M E++  +W+ MI 
Sbjct: 244 AQNNRIDEADQLFQVMPERDFASWNTMITGFIRNREMNKACGLFDRMPEKNVISWTTMIT 303

Query: 308 VYERKGFELEALGLFARMQREGAAL-NFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFD 366
            Y       EAL +F++M R+G+   N                   G+Q+H  + +S   
Sbjct: 304 GYVENKENEEALNVFSKMLRDGSVKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQ 363

Query: 367 QDLYVASALITMYVKCGDLVRAKWIFNRYPL--KDVVMWNSMITGYSQHGLGEEALNVFR 424
           ++  V SAL+ MY K G+L+ A+ +F+   +  +D++ WNSMI  Y+ HG G+EA+ ++ 
Sbjct: 364 KNEIVTSALLNMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYN 423

Query: 425 DMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRA 484
            M   G  P  ++++ +L ACS++G V++G E F+ +     +    EHY C+VDL GRA
Sbjct: 424 QMRKHGFKPSAVTYLNLLFACSHAGLVEKGMEFFKDLVRDESLPLREEHYTCLVDLCGRA 483

Query: 485 GQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLS 544
           G++ D    +           +G++L AC  H ++ +A+  V+K+ +    +AG YVL+S
Sbjct: 484 GRLKDVTNFINCDDARLSRSFYGAILSACNVHNEVSIAKEVVKKVLETGSDDAGTYVLMS 543

Query: 545 HMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKML 604
           ++YA+ G+ E+   +R K+K + + K PG SW++V K+ H+FV GD + HP+        
Sbjct: 544 NIYAANGKREEAAEMRMKMKEKGLKKQPGCSWVKVGKQNHLFVVGDKS-HPQ-------F 595

Query: 605 ERLDGLLRDA-GYSPDHSFVLHDVEEEE 631
           E LD +L D       +  V  D EE E
Sbjct: 596 EALDSILSDLRNKMRKNKNVTSDAEEAE 623



 Score =  239 bits (611), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 155/499 (31%), Positives = 255/499 (51%), Gaps = 53/499 (10%)

Query: 20  TSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPE 79
           T T  I+ Y ++G +  AR++FD      +   +W AMV+ Y ++ Q   A  LF+  PE
Sbjct: 79  TWTHVITGYIKLGDMREARELFDRVDS-RKNVVTWTAMVSGYLRSKQLSIAEMLFQEMPE 137

Query: 80  KNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM 139
           +N+VSWN M+ G+ ++G + +A  +FD MP RN+VSW SMV+  VQ G ++EA  LF RM
Sbjct: 138 RNVVSWNTMIDGYAQSGRIDKALELFDEMPERNIVSWNSMVKALVQRGRIDEAMNLFERM 197

Query: 140 PEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFD 199
           P ++VVSWT M+ GL K+ +V++AR+LFD MP +++++   MI GY +  R++EA  LF 
Sbjct: 198 PRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPERNIISWNAMITGYAQNNRIDEADQLFQ 257

Query: 200 EMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEF 259
            MP+R+  +W TM++G+ RNR ++ A  LF+ MPE+N +SWT M+ GY  +    EA   
Sbjct: 258 VMPERDFASWNTMITGFIRNREMNKACGLFDRMPEKNVISWTTMITGYVENKENEEALNV 317

Query: 260 FDAM----PVKPVV--------AC-----------------------NEMIMG-----FG 279
           F  M     VKP V        AC                       NE++       + 
Sbjct: 318 FSKMLRDGSVKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQKNEIVTSALLNMYS 377

Query: 280 FDGDVDRAKAVFEK--MRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXX 337
             G++  A+ +F+   + +RD  +W++MI VY   G   EA+ ++ +M++ G   +    
Sbjct: 378 KSGELIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYNQMRKHGFKPSAVTY 437

Query: 338 XXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVK-CGDLVRAKWIFNRYP 396
                        + G +    LVR   D+ L +     T  V  CG   R K + N   
Sbjct: 438 LNLLFACSHAGLVEKGMEFFKDLVR---DESLPLREEHYTCLVDLCGRAGRLKDVTNFIN 494

Query: 397 LKDVVM----WNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVK 452
             D  +    + ++++  + H     A  V + +  +G   D  +++ + +  + +GK +
Sbjct: 495 CDDARLSRSFYGAILSACNVHNEVSIAKEVVKKVLETG-SDDAGTYVLMSNIYAANGKRE 553

Query: 453 EGREIFESMKCK-YQVEPG 470
           E  E+   MK K  + +PG
Sbjct: 554 EAAEMRMKMKEKGLKKQPG 572



 Score =  172 bits (437), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 113/370 (30%), Positives = 186/370 (50%), Gaps = 43/370 (11%)

Query: 181 MIGGYCEEGRLEEARALFDEMPKRNVVTWTT----------------------------- 211
           +IG  C+ G++ EAR LFD +P+R+VVTWT                              
Sbjct: 52  LIGELCKVGKIAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSRKNVVT 111

Query: 212 ---MVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPV 268
              MVSGY R++++ +A  LF+ MPERN VSW  M+ GY  SGR+ +A E FD MP + +
Sbjct: 112 WTAMVSGYLRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMPERNI 171

Query: 269 VACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQRE 328
           V+ N M+      G +D A  +FE+M  RD  +W+AM+    + G   EA  LF  M  E
Sbjct: 172 VSWNSMVKALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRLFDCMP-E 230

Query: 329 GAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRA 388
              +++                D   QV         ++D    + +IT +++  ++ +A
Sbjct: 231 RNIISWNAMITGYAQNNRIDEADQLFQVMP-------ERDFASWNTMITGFIRNREMNKA 283

Query: 389 KWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSG-VPPDDISFIGVLSACSY 447
             +F+R P K+V+ W +MITGY ++   EEALNVF  M   G V P+  +++ +LSACS 
Sbjct: 284 CGLFDRMPEKNVISWTTMITGYVENKENEEALNVFSKMLRDGSVKPNVGTYVSILSACSD 343

Query: 448 SGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEK-MPMEPDAIVW 506
              + EG++I + +      +  I   A ++++  ++G++  A ++ +  +  + D I W
Sbjct: 344 LAGLVEGQQIHQLISKSVHQKNEIVTSA-LLNMYSKSGELIAARKMFDNGLVCQRDLISW 402

Query: 507 GSLLGACRTH 516
            S++     H
Sbjct: 403 NSMIAVYAHH 412


>AT3G13770.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:4519647-4521533 FORWARD
           LENGTH=628
          Length = 628

 Score =  394 bits (1011), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/620 (35%), Positives = 338/620 (54%), Gaps = 47/620 (7%)

Query: 134 RLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMM-PVKDVVAVTNMIGGYCEEGRLE 192
           R F   P   V+   + +  L  + R+++A     M+ P         ++    ++  L 
Sbjct: 10  RSFSSSPTNYVLQTILPISQLCSNGRLQEALLEMAMLGPEMGFHGYDALLNACLDKRALR 69

Query: 193 EARALFDEMPKRNVVTWTTMVSG----YARNRRVDVARKLFEVMPERNEVSWTAMLMGYT 248
           + + +   M K   +  T + +     Y +   ++ ARK+ + MPE+N VSWTAM+  Y+
Sbjct: 70  DGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYS 129

Query: 249 HSGRMREASEFFDAM---PVKP--------VVAC------------NEMIMGFGFD---- 281
            +G   EA   F  M     KP        + +C            + +I+ + +D    
Sbjct: 130 QTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIF 189

Query: 282 ------------GDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREG 329
                       G +  A+ +FE + ERD  + +A+I  Y + G + EAL +F R+  EG
Sbjct: 190 VGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEG 249

Query: 330 AALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAK 389
            + N+                DHG+Q H  ++R E      + ++LI MY KCG+L  A+
Sbjct: 250 MSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAR 309

Query: 390 WIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSG-VPPDDISFIGVLSACSYS 448
            +F+  P +  + WN+M+ GYS+HGLG E L +FR M     V PD ++ + VLS CS+ 
Sbjct: 310 RLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHG 369

Query: 449 GKVKEGREIFESMKC-KYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWG 507
                G  IF+ M   +Y  +PG EHY C+VD+LGRAG++++A E +++MP +P A V G
Sbjct: 370 RMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLG 429

Query: 508 SLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRS 567
           SLLGACR H+ +D+ E    +L ++EP+NAG YV+LS++YAS GRW DV  VR  +  ++
Sbjct: 430 SLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNVRAMMMQKA 489

Query: 568 VIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDV 627
           V K PG SWI+ E+  H F   D   HP +  ++  ++ +   ++ AGY PD S VL+DV
Sbjct: 490 VTKEPGRSWIQHEQTLHYFHANDRT-HPRREEVLAKMKEISIKMKQAGYVPDLSCVLYDV 548

Query: 628 EEEEKTHSLGYHSEKLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIV 687
           +EE+K   L  HSEKLA+ +GL+   EG+PIRV KNLR+C DCH+  K+ +KV  RE+ +
Sbjct: 549 DEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSL 608

Query: 688 RDANRFHHFKDGYCSCKDYW 707
           RD NRFH   DG CSC DYW
Sbjct: 609 RDKNRFHQIVDGICSCGDYW 628



 Score =  105 bits (263), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 129/290 (44%), Gaps = 58/290 (20%)

Query: 28  YARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKN------ 81
           Y +   +E+ARKV DE P   +   SW AM++ Y Q     +A+T+F      +      
Sbjct: 97  YGKCDCLEDARKVLDEMPE--KNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEF 154

Query: 82  ------------------------IVSWN---------GMVSGFVKNGMVAEARRVFDAM 108
                                   IV WN          ++  + K G + EAR +F+ +
Sbjct: 155 TFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECL 214

Query: 109 PVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEK----NVVSWTVMLG-----GLLKDSR 159
           P R+VVS T+++ GY Q G  EEA  +F R+  +    N V++  +L       LL   +
Sbjct: 215 PERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGK 274

Query: 160 VEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARN 219
                 L   +P   V+   ++I  Y + G L  AR LFD MP+R  ++W  M+ GY+++
Sbjct: 275 QAHCHVLRRELPFYAVLQ-NSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKH 333

Query: 220 RRVDVARKLFEVMPER-----NEVSWTAMLMGYTHSGRMREAS-EFFDAM 263
                  +LF +M +      + V+  A+L G +H GRM +     FD M
Sbjct: 334 GLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSH-GRMEDTGLNIFDGM 382



 Score = 96.3 bits (238), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 132/323 (40%), Gaps = 89/323 (27%)

Query: 98  VAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKN-------------- 143
           + +AR+V D MP +NVVSWT+M+  Y Q G+  EA  +F  M   +              
Sbjct: 103 LEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTS 162

Query: 144 ----------------VVSWT----VMLGGLLKD-----SRVEDARKLFDMMPVKDVVAV 178
                           +V W     + +G  L D      ++++AR++F+ +P +DVV+ 
Sbjct: 163 CIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSC 222

Query: 179 TNMIGGYCEEGRLEEARALFDEMPKR----NVVTWTTMVSG------------------- 215
           T +I GY + G  EEA  +F  +       N VT+ ++++                    
Sbjct: 223 TAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLR 282

Query: 216 ----------------YARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEF 259
                           Y++   +  AR+LF+ MPER  +SW AML+GY+  G  RE  E 
Sbjct: 283 RELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLEL 342

Query: 260 F----DAMPVKP-VVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGT------WSAMIKV 308
           F    D   VKP  V    ++ G       D    +F+ M   + GT      +  ++ +
Sbjct: 343 FRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDM 402

Query: 309 YERKGFELEALGLFARMQREGAA 331
             R G   EA     RM  +  A
Sbjct: 403 LGRAGRIDEAFEFIKRMPSKPTA 425


>AT3G57430.1 | Symbols: OTP84 | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:21255731-21258403 REVERSE
           LENGTH=890
          Length = 890

 Score =  393 bits (1010), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 237/660 (35%), Positives = 349/660 (52%), Gaps = 33/660 (5%)

Query: 79  EKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWR 138
           E N    N +V+ + K G +A ++ +  +   R++V+W +++    Q   + EA      
Sbjct: 233 ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLRE 292

Query: 139 M------PEKNVVSWTVMLGG---LLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEG 189
           M      P++  +S  +       +L+  +   A  L +    ++    + ++  YC   
Sbjct: 293 MVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCK 352

Query: 190 RLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPER-----NEVSWTAML 244
           ++   R +FD M  R +  W  M++GY++N     A  LF  M E      N  +   ++
Sbjct: 353 QVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVV 412

Query: 245 MGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFD-----GDVDRAKAVFEKMRERDD 299
                SG      E      VK  +  +  +     D     G +D A  +F KM +RD 
Sbjct: 413 PACVRSGAFSR-KEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDL 471

Query: 300 GTWSAMIKVYERKGFELEALGLFARMQR------EGAAL-----NFPXXXXXXXXXXXXX 348
            TW+ MI  Y       +AL L  +MQ       +GA+      N               
Sbjct: 472 VTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALS 531

Query: 349 XXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMIT 408
               G+++HA  +++    D+ V SAL+ MY KCG L  ++ +F++ P K+V+ WN +I 
Sbjct: 532 ALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIM 591

Query: 409 GYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVE 468
            Y  HG G+EA+++ R M + GV P++++FI V +ACS+SG V EG  IF  MK  Y VE
Sbjct: 592 AYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVE 651

Query: 469 PGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPD-AIVWGSLLGACRTHMKLDLAEVAVE 527
           P  +HYAC+VDLLGRAG++ +A +++  MP + + A  W SLLGA R H  L++ E+A +
Sbjct: 652 PSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQ 711

Query: 528 KLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFV 587
            L QLEP  A  YVLL+++Y+S G W+    VR  +K + V K PG SWIE   + H FV
Sbjct: 712 NLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFV 771

Query: 588 GGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDVEEEEKTHSLGYHSEKLAIAY 647
            GD++ HP+   +   LE L   +R  GY PD S VLH+VEE+EK   L  HSEKLAIA+
Sbjct: 772 AGDSS-HPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAF 830

Query: 648 GLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIVRDANRFHHFKDGYCSCKDYW 707
           G+L    G  IRV KNLRVC DCH A K I+K+  REII+RD  RFH FK+G CSC DYW
Sbjct: 831 GILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890



 Score =  112 bits (280), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 106/474 (22%), Positives = 197/474 (41%), Gaps = 57/474 (12%)

Query: 86  NGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVV 145
           N +V+ + K G      +VFD +  RN VSW S++         E A   F  M ++NV 
Sbjct: 137 NTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVE 196

Query: 146 SWTVMLGGLLKDSRVEDARKLFDMMPVKDVVA------------VTNMIGGYCEEGRLEE 193
             +  L  ++  +   +      +M  K V A            +  ++  Y + G+L  
Sbjct: 197 PSSFTLVSVV--TACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLAS 254

Query: 194 ARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVM----PERNEVSWTAMLMGYTH 249
           ++ L      R++VTW T++S   +N ++  A +    M     E +E + +++L   +H
Sbjct: 255 SKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSH 314

Query: 250 SGRMREASE---------------FFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKM 294
              +R   E               F  +  V     C +++ G          + VF+ M
Sbjct: 315 LEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSG----------RRVFDGM 364

Query: 295 RERDDGTWSAMIKVYERKGFELEALGLFARMQREGAAL-NFPXXXXXXXXXXXXXXXDHG 353
            +R  G W+AMI  Y +   + EAL LF  M+     L N                    
Sbjct: 365 FDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRK 424

Query: 354 RQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQH 413
             +H  +V+   D+D +V + L+ MY + G +  A  IF +   +D+V WN+MITGY   
Sbjct: 425 EAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFS 484

Query: 414 GLGEEALNVFRDM-----------CLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMK 462
              E+AL +   M               + P+ I+ + +L +C+    + +G+EI  +  
Sbjct: 485 EHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEI-HAYA 543

Query: 463 CKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTH 516
            K  +   +   + +VD+  + G +  + ++ +++P + + I W  ++ A   H
Sbjct: 544 IKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIMAYGMH 596



 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/390 (22%), Positives = 165/390 (42%), Gaps = 42/390 (10%)

Query: 172 VKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEV 231
           V  V     ++  Y + G       +FD + +RN V+W +++S      + ++A + F  
Sbjct: 130 VDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRC 189

Query: 232 MPERN--EVSWT---------------AMLMG---YTHSGRMREASEFFDAMPVKPVVAC 271
           M + N    S+T                ++MG   + +  R  E + F            
Sbjct: 190 MLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFI----------I 239

Query: 272 NEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAA 331
           N ++  +G  G +  +K +      RD  TW+ ++    +    LEAL     M  EG  
Sbjct: 240 NTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVE 299

Query: 332 LNFPXXXXXXXXXXXXXXXDHGRQVHARLVRS-EFDQDLYVASALITMYVKCGDLVRAKW 390
            +                   G+++HA  +++   D++ +V SAL+ MY  C  ++  + 
Sbjct: 300 PDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRR 359

Query: 391 IFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLS-GVPPDDISFIGVLSACSYSG 449
           +F+    + + +WN+MI GYSQ+   +EAL +F  M  S G+  +  +  GV+ AC  SG
Sbjct: 360 VFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSG 419

Query: 450 KVKEGREIFESMKCKYQVEPGIEH----YACMVDLLGRAGQVNDAVEIVEKMPMEPDAIV 505
                  I       + V+ G++        ++D+  R G+++ A+ I  KM  + D + 
Sbjct: 420 AFSRKEAIH-----GFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKME-DRDLVT 473

Query: 506 WGSLLGACRTHMKLDLAEVAVEKLAQLEPK 535
           W +++         + A + + K+  LE K
Sbjct: 474 WNTMITGYVFSEHHEDALLLLHKMQNLERK 503



 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/344 (21%), Positives = 141/344 (40%), Gaps = 39/344 (11%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEK- 80
           +  +  Y    Q+ + R+VFD      R    WNAM+A Y Q     +A+ LF    E  
Sbjct: 342 SALVDMYCNCKQVLSGRRVFDGM--FDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESA 399

Query: 81  ----NIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNV----VSWTSMVRGYVQEGNVEEA 132
               N  +  G+V   V++G  +    +   +  R +        +++  Y + G ++ A
Sbjct: 400 GLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIA 459

Query: 133 ERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMP---------------VKDVVA 177
            R+F +M ++++V+W  M+ G +     EDA  L   M                  + + 
Sbjct: 460 MRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSIT 519

Query: 178 VTNMIGGYCEEGRLEEARALFDEMPKRNVVT----WTTMVSGYARNRRVDVARKLFEVMP 233
           +  ++        L + + +     K N+ T     + +V  YA+   + ++RK+F+ +P
Sbjct: 520 LMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP 579

Query: 234 ERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPV----VACNEMIMGFGFDGDVDRAKA 289
           ++N ++W  ++M Y   G  +EA +    M V+ V    V    +       G VD    
Sbjct: 580 QKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLR 639

Query: 290 VFEKMR-----ERDDGTWSAMIKVYERKGFELEALGLFARMQRE 328
           +F  M+     E     ++ ++ +  R G   EA  L   M R+
Sbjct: 640 IFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRD 683


>AT4G21065.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:11245976-11247763 FORWARD
           LENGTH=595
          Length = 595

 Score =  392 bits (1008), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/526 (39%), Positives = 313/526 (59%), Gaps = 14/526 (2%)

Query: 194 ARALFDEMPKR-NVVTWTTMVSGYARNRRVDVARKLFEVM-----PERNEVSWTAMLMGY 247
           A  +F ++ K  NV  W T++ GYA       A  L+  M      E +  ++  ++   
Sbjct: 72  AHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAV 131

Query: 248 THSGRMREASEFFDAMPVKP-----VVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTW 302
           T    +R   E   ++ ++      +   N ++  +   GDV  A  VF+KM E+D   W
Sbjct: 132 TTMADVR-LGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAW 190

Query: 303 SAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVR 362
           +++I  +   G   EAL L+  M  +G   +                   G++VH  +++
Sbjct: 191 NSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIK 250

Query: 363 SEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNV 422
               ++L+ ++ L+ +Y +CG +  AK +F+    K+ V W S+I G + +G G+EA+ +
Sbjct: 251 VGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIEL 310

Query: 423 FRDM-CLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLL 481
           F+ M    G+ P +I+F+G+L ACS+ G VKEG E F  M+ +Y++EP IEH+ CMVDLL
Sbjct: 311 FKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLL 370

Query: 482 GRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYV 541
            RAGQV  A E ++ MPM+P+ ++W +LLGAC  H   DLAE A  ++ QLEP ++G YV
Sbjct: 371 ARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYV 430

Query: 542 LLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIM 601
           LLS+MYAS+ RW DV+ +R+++    V K+PG+S +EV  + H F+ GD + HP+   I 
Sbjct: 431 LLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKS-HPQSDAIY 489

Query: 602 KMLERLDGLLRDAGYSPDHSFVLHDVEEEEKTHSLGYHSEKLAIAYGLLKVPEGMPIRVM 661
             L+ + G LR  GY P  S V  DVEEEEK +++ YHSEK+AIA+ L+  PE  PI V+
Sbjct: 490 AKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVV 549

Query: 662 KNLRVCGDCHSAIKLIAKVTGREIIVRDANRFHHFKDGYCSCKDYW 707
           KNLRVC DCH AIKL++KV  REI+VRD +RFHHFK+G CSC+DYW
Sbjct: 550 KNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595



 Score = 90.9 bits (224), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 97/193 (50%), Gaps = 17/193 (8%)

Query: 86  NGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV- 144
           N ++  +   G VA A +VFD MP +++V+W S++ G+ + G  EEA  L+  M  K + 
Sbjct: 160 NSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIK 219

Query: 145 ---------VSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEAR 195
                    +S    +G L    RV     +  +   +++ +   ++  Y   GR+EEA+
Sbjct: 220 PDGFTIVSLLSACAKIGALTLGKRVH--VYMIKVGLTRNLHSSNVLLDLYARCGRVEEAK 277

Query: 196 ALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERN-----EVSWTAMLMGYTHS 250
            LFDEM  +N V+WT+++ G A N     A +LF+ M         E+++  +L   +H 
Sbjct: 278 TLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHC 337

Query: 251 GRMREASEFFDAM 263
           G ++E  E+F  M
Sbjct: 338 GMVKEGFEYFRRM 350



 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 117/283 (41%), Gaps = 56/283 (19%)

Query: 101 ARRVFDAM--PVRNVVSWTSMVRGYVQEGNVEEAERLFWRM-------PEKNVVSWTVML 151
           A +VF  +  P+ NV  W +++RGY + GN   A  L+  M       P+ +   + +  
Sbjct: 72  AHKVFSKIEKPI-NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKA 130

Query: 152 GGLLKDSR---------------------------------VEDARKLFDMMPVKDVVAV 178
              + D R                                 V  A K+FD MP KD+VA 
Sbjct: 131 VTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAW 190

Query: 179 TNMIGGYCEEGRLEEARALFDEMPKRNV----VTWTTMVSGYARNRRVDVARK----LFE 230
            ++I G+ E G+ EEA AL+ EM  + +     T  +++S  A+   + + ++    + +
Sbjct: 191 NSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIK 250

Query: 231 VMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAV 290
           V   RN  S   +L  Y   GR+ EA   FD M  K  V+   +I+G   +G    A  +
Sbjct: 251 VGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIEL 310

Query: 291 FEKMRERD-----DGTWSAMIKVYERKGFELEALGLFARMQRE 328
           F+ M   +     + T+  ++      G   E    F RM+ E
Sbjct: 311 FKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREE 353



 Score = 73.6 bits (179), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 119/253 (47%), Gaps = 19/253 (7%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNV- 113
           N+++  Y        A  +F+  PEK++V+WN +++GF +NG   EA  ++  M  + + 
Sbjct: 160 NSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIK 219

Query: 114 ---VSWTSMVRGYVQEGNVEEAERLFWRMPE----KNVVSWTVMLGGLLKDSRVEDARKL 166
               +  S++    + G +   +R+   M +    +N+ S  V+L    +  RVE+A+ L
Sbjct: 220 PDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTL 279

Query: 167 FDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRN-----VVTWTTMVSGYARNRR 221
           FD M  K+ V+ T++I G    G  +EA  LF  M          +T+  ++   +    
Sbjct: 280 FDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGM 339

Query: 222 VDVARKLFEVMPERNEVS-----WTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIM 276
           V    + F  M E  ++      +  M+     +G++++A E+  +MP++P V     ++
Sbjct: 340 VKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLL 399

Query: 277 G-FGFDGDVDRAK 288
           G     GD D A+
Sbjct: 400 GACTVHGDSDLAE 412



 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 109/243 (44%), Gaps = 21/243 (8%)

Query: 28  YARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNI----V 83
           YA  G + +A KVFD+ P   +   +WN+++  + +  +P +A+ L+     K I     
Sbjct: 166 YANCGDVASAYKVFDKMP--EKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGF 223

Query: 84  SWNGMVSGFVKNGMVAEARRVFDAMP----VRNVVSWTSMVRGYVQEGNVEEAERLFWRM 139
           +   ++S   K G +   +RV   M      RN+ S   ++  Y + G VEEA+ LF  M
Sbjct: 224 TIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEM 283

Query: 140 PEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKD-----VVAVTNMIGGYCEEGRLEEA 194
            +KN VSWT ++ GL  +   ++A +LF  M   +      +    ++      G ++E 
Sbjct: 284 VDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEG 343

Query: 195 RALFDEMPKR-----NVVTWTTMVSGYARNRRVDVARKLFEVMP-ERNEVSWTAMLMGYT 248
              F  M +       +  +  MV   AR  +V  A +  + MP + N V W  +L   T
Sbjct: 344 FEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACT 403

Query: 249 HSG 251
             G
Sbjct: 404 VHG 406


>AT4G01030.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr4:448336-450642 REVERSE LENGTH=768
          Length = 768

 Score =  392 bits (1006), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 225/745 (30%), Positives = 380/745 (51%), Gaps = 62/745 (8%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTP--- 78
           + ++  Y R   +  A K+FDE P   R   +WN +V    ++    +AV LF       
Sbjct: 27  SASMGFYGRCVSLGFANKLFDEMPK--RDDLAWNEIVMVNLRSGNWEKAVELFREMQFSG 84

Query: 79  ------------------------------------EKNIVSWNGMVSGFVKNGMVAEAR 102
                                               E N+   N ++  + +NG +  +R
Sbjct: 85  AKAYDSTMVKLLQVCSNKEGFAEGRQIHGYVLRLGLESNVSMCNSLIVMYSRNGKLELSR 144

Query: 103 RVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMP----EKNVVSWTVMLGGLLKDS 158
           +VF++M  RN+ SW S++  Y + G V++A  L   M     + ++V+W  +L G     
Sbjct: 145 KVFNSMKDRNLSSWNSILSSYTKLGYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYASKG 204

Query: 159 RVEDARKLFDMMPVK----DVVAVTNMIGGYCEEGRLEEARALFDEMPKR----NVVTWT 210
             +DA  +   M +        ++++++    E G L+  +A+   + +     +V   T
Sbjct: 205 LSKDAIAVLKRMQIAGLKPSTSSISSLLQAVAEPGHLKLGKAIHGYILRNQLWYDVYVET 264

Query: 211 TMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMP---VKP 267
           T++  Y +   +  AR +F++M  +N V+W +++ G +++  +++A      M    +KP
Sbjct: 265 TLIDMYIKTGYLPYARMVFDMMDAKNIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKP 324

Query: 268 -VVACNEMIMGFGFDGDVDRAKAVFEKMRERDDG----TWSAMIKVYERKGFELEALGLF 322
             +  N +  G+   G  ++A  V  KM+E+       +W+A+     + G    AL +F
Sbjct: 325 DAITWNSLASGYATLGKPEKALDVIGKMKEKGVAPNVVSWTAIFSGCSKNGNFRNALKVF 384

Query: 323 ARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKC 382
            +MQ EG   N                   G++VH   +R     D YVA+AL+ MY K 
Sbjct: 385 IKMQEEGVGPNAATMSTLLKILGCLSLLHSGKEVHGFCLRKNLICDAYVATALVDMYGKS 444

Query: 383 GDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVL 442
           GDL  A  IF     K +  WN M+ GY+  G GEE +  F  M  +G+ PD I+F  VL
Sbjct: 445 GDLQSAIEIFWGIKNKSLASWNCMLMGYAMFGRGEEGIAAFSVMLEAGMEPDAITFTSVL 504

Query: 443 SACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPD 502
           S C  SG V+EG + F+ M+ +Y + P IEH +CMVDLLGR+G +++A + ++ M ++PD
Sbjct: 505 SVCKNSGLVQEGWKYFDLMRSRYGIIPTIEHCSCMVDLLGRSGYLDEAWDFIQTMSLKPD 564

Query: 503 AIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREK 562
           A +WG+ L +C+ H  L+LAE+A ++L  LEP N+  Y+++ ++Y++  RWEDVE +R  
Sbjct: 565 ATIWGAFLSSCKIHRDLELAEIAWKRLQVLEPHNSANYMMMINLYSNLNRWEDVERIRNL 624

Query: 563 IKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSF 622
           ++   V     +SWI++++  H+F   +   HP++  I   L +L   ++ +GY PD S 
Sbjct: 625 MRNNRVRVQDLWSWIQIDQTVHIFY-AEGKTHPDEGDIYFELYKLVSEMKKSGYVPDTSC 683

Query: 623 VLHDVEEEEKTHSLGYHSEKLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTG 682
           +  D+ + EK   L  H+EKLA+ YGL+K     PIRV+KN  +C D H+  K ++ +  
Sbjct: 684 IHQDISDSEKEKLLMGHTEKLAMTYGLIKKKGLAPIRVVKNTNICSDSHTVAKYMSVLRN 743

Query: 683 REIIVRDANRFHHFKDGYCSCKDYW 707
           REI++++  R HHF+DG CSC D W
Sbjct: 744 REIVLQEGARVHHFRDGKCSCNDSW 768



 Score =  113 bits (282), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 167/383 (43%), Gaps = 47/383 (12%)

Query: 174 DVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMP 233
           D   V+  +G Y     L  A  LFDEMPKR+ + W  +V    R+   + A +LF  M 
Sbjct: 22  DTRVVSASMGFYGRCVSLGFANKLFDEMPKRDDLAWNEIVMVNLRSGNWEKAVELFREMQ 81

Query: 234 ---------------------------------------ERNEVSWTAMLMGYTHSGRMR 254
                                                  E N     ++++ Y+ +G++ 
Sbjct: 82  FSGAKAYDSTMVKLLQVCSNKEGFAEGRQIHGYVLRLGLESNVSMCNSLIVMYSRNGKLE 141

Query: 255 EASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMR----ERDDGTWSAMIKVYE 310
            + + F++M  + + + N ++  +   G VD A  + ++M     + D  TW++++  Y 
Sbjct: 142 LSRKVFNSMKDRNLSSWNSILSSYTKLGYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYA 201

Query: 311 RKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLY 370
            KG   +A+ +  RMQ  G   +                   G+ +H  ++R++   D+Y
Sbjct: 202 SKGLSKDAIAVLKRMQIAGLKPSTSSISSLLQAVAEPGHLKLGKAIHGYILRNQLWYDVY 261

Query: 371 VASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSG 430
           V + LI MY+K G L  A+ +F+    K++V WNS+++G S   L ++A  +   M   G
Sbjct: 262 VETTLIDMYIKTGYLPYARMVFDMMDAKNIVAWNSLVSGLSYACLLKDAEALMIRMEKEG 321

Query: 431 VPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDA 490
           + PD I++  + S  +  GK ++  ++   MK K  V P +  +  +     + G   +A
Sbjct: 322 IKPDAITWNSLASGYATLGKPEKALDVIGKMKEK-GVAPNVVSWTAIFSGCSKNGNFRNA 380

Query: 491 VEIVEKMPME---PDAIVWGSLL 510
           +++  KM  E   P+A    +LL
Sbjct: 381 LKVFIKMQEEGVGPNAATMSTLL 403



 Score =  105 bits (262), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 169/386 (43%), Gaps = 64/386 (16%)

Query: 3   YGYSTLRVCMVQVRFQCTSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYF 62
           +GY  LR+ +      C S   I  Y+R G++E +RKVF+      R  SSWN+++++Y 
Sbjct: 112 HGY-VLRLGLESNVSMCNSL--IVMYSRNGKLELSRKVFNSMK--DRNLSSWNSILSSYT 166

Query: 63  QAHQPHQAVTLFETTP----EKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVR----NVV 114
           +      A+ L +       + +IV+WN ++SG+   G+  +A  V   M +     +  
Sbjct: 167 KLGYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYASKGLSKDAIAVLKRMQIAGLKPSTS 226

Query: 115 SWTSMVRGYVQEGNVEEAERLFWRMPEK----NVVSWTVMLGGLLKDSRVEDARKLFDMM 170
           S +S+++   + G+++  + +   +       +V   T ++   +K   +  AR +FDMM
Sbjct: 227 SISSLLQAVAEPGHLKLGKAIHGYILRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMM 286

Query: 171 PVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNV----VTWTTMVSGYAR----NRRV 222
             K++VA  +++ G      L++A AL   M K  +    +TW ++ SGYA      + +
Sbjct: 287 DAKNIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKPEKAL 346

Query: 223 DVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMP---VKP----------VV 269
           DV  K+ E     N VSWTA+  G + +G  R A + F  M    V P          ++
Sbjct: 347 DVIGKMKEKGVAPNVVSWTAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLLKIL 406

Query: 270 ACNEMIMG--------------------------FGFDGDVDRAKAVFEKMRERDDGTWS 303
            C  ++                            +G  GD+  A  +F  ++ +   +W+
Sbjct: 407 GCLSLLHSGKEVHGFCLRKNLICDAYVATALVDMYGKSGDLQSAIEIFWGIKNKSLASWN 466

Query: 304 AMIKVYERKGFELEALGLFARMQREG 329
            M+  Y   G   E +  F+ M   G
Sbjct: 467 CMLMGYAMFGRGEEGIAAFSVMLEAG 492



 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 114/245 (46%), Gaps = 8/245 (3%)

Query: 244 LMGYT-HSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTW 302
            +G T H G ++   +  D   V   +      +  GF      A  +F++M +RDD  W
Sbjct: 4   FLGLTIHGGLIKRGLDNSDTRVVSASMGFYGRCVSLGF------ANKLFDEMPKRDDLAW 57

Query: 303 SAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVR 362
           + ++ V  R G   +A+ LF  MQ  GA                      GRQ+H  ++R
Sbjct: 58  NEIVMVNLRSGNWEKAVELFREMQFSGAKAYDSTMVKLLQVCSNKEGFAEGRQIHGYVLR 117

Query: 363 SEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNV 422
              + ++ + ++LI MY + G L  ++ +FN    +++  WNS+++ Y++ G  ++A+ +
Sbjct: 118 LGLESNVSMCNSLIVMYSRNGKLELSRKVFNSMKDRNLSSWNSILSSYTKLGYVDDAIGL 177

Query: 423 FRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLG 482
             +M + G+ PD +++  +LS  +  G  K+   + + M+    ++P     + ++  + 
Sbjct: 178 LDEMEICGLKPDIVTWNSLLSGYASKGLSKDAIAVLKRMQIA-GLKPSTSSISSLLQAVA 236

Query: 483 RAGQV 487
             G +
Sbjct: 237 EPGHL 241


>AT4G14850.1 | Symbols: LOI1, MEF11 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:8513947-8516275 FORWARD
           LENGTH=684
          Length = 684

 Score =  392 bits (1006), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 234/680 (34%), Positives = 357/680 (52%), Gaps = 68/680 (10%)

Query: 86  NGMVSGFVKNGMVAEAR--RVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKN 143
           N + +  ++ G V  AR  +  D+ P   + ++  ++  Y +  + E A  +    P +N
Sbjct: 15  NAISASSMRLGRVVHARIVKTLDSPPPPFLANY--LINMYSKLDHPESARLVLRLTPARN 72

Query: 144 VVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVV-----------AVTNM----IGGYCEE 188
           VVSWT ++ GL ++     A   F  M  + VV           AV ++     G     
Sbjct: 73  VVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQIHA 132

Query: 189 GRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYT 248
             ++  R L       +V    +    Y + R  D ARKLF+ +PERN  +W A +    
Sbjct: 133 LAVKCGRIL-------DVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSV 185

Query: 249 HSGRMREASEFF------DAMPVKPVV-----ACNE------------MIMGFGFDGDVD 285
             GR REA E F      D  P          AC++            +++  GFD DV 
Sbjct: 186 TDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVS 245

Query: 286 ----------------RAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREG 329
                            ++ +F +M  ++  +W +++  Y +   + +A  L+ R +++ 
Sbjct: 246 VCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDI 305

Query: 330 AALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAK 389
              +                 + GR +HA  V++  ++ ++V SAL+ MY KCG +  ++
Sbjct: 306 VETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSE 365

Query: 390 WIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGV--PPDDISFIGVLSACSY 447
             F+  P K++V  NS+I GY+  G  + AL +F +M   G    P+ ++F+ +LSACS 
Sbjct: 366 QAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSR 425

Query: 448 SGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWG 507
           +G V+ G +IF+SM+  Y +EPG EHY+C+VD+LGRAG V  A E ++KMP++P   VWG
Sbjct: 426 AGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWG 485

Query: 508 SLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRS 567
           +L  ACR H K  L  +A E L +L+PK++G +VLLS+ +A+ GRW +   VRE++K   
Sbjct: 486 ALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVG 545

Query: 568 VIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDV 627
           + K  GYSWI V+ + H F   D + H     I   L +L   +  AGY PD    L+D+
Sbjct: 546 IKKGAGYSWITVKNQVHAFQAKDRS-HILNKEIQTTLAKLRNEMEAAGYKPDLKLSLYDL 604

Query: 628 EEEEKTHSLGYHSEKLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIV 687
           EEEEK   + +HSEKLA+A+GLL +P  +PIR+ KNLR+CGDCHS  K ++    REIIV
Sbjct: 605 EEEEKAAEVSHHSEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIV 664

Query: 688 RDANRFHHFKDGYCSCKDYW 707
           RD NRFH FKDG CSCKDYW
Sbjct: 665 RDNNRFHRFKDGICSCKDYW 684



 Score = 94.0 bits (232), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 134/338 (39%), Gaps = 95/338 (28%)

Query: 24  AISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLF--------- 74
           A   Y +    ++ARK+FDE P   R   +WNA ++      +P +A+  F         
Sbjct: 149 AFDMYCKTRLRDDARKLFDEIP--ERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGH 206

Query: 75  ------------------------------ETTPEKNIVSWNGMVSGFVKNGMVAEARRV 104
                                          +  + ++   NG++  + K   +  +  +
Sbjct: 207 PNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEII 266

Query: 105 FDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPE----------------------- 141
           F  M  +N VSW S+V  YVQ    E+A  L+ R  +                       
Sbjct: 267 FTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGL 326

Query: 142 -----------KNVVSWTVMLGGLLKD-----SRVEDARKLFDMMPVKDVVAVTNMIGGY 185
                      K  V  T+ +G  L D       +ED+ + FD MP K++V   ++IGGY
Sbjct: 327 ELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGY 386

Query: 186 CEEGRLEEARALFDEM------PKRNVVTWTTMVSGYARNRRVDVARKLFEVM------- 232
             +G+++ A ALF+EM      P  N +T+ +++S  +R   V+   K+F+ M       
Sbjct: 387 AHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIE 446

Query: 233 PERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVA 270
           P     S    ++G   +G +  A EF   MP++P ++
Sbjct: 447 PGAEHYSCIVDMLG--RAGMVERAYEFIKKMPIQPTIS 482



 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 121/325 (37%), Gaps = 93/325 (28%)

Query: 61  YFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVF------DAMP----- 109
           Y +      A  LF+  PE+N+ +WN  +S  V +G   EA   F      D  P     
Sbjct: 153 YCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITF 212

Query: 110 ---VRNVVSWTSMVRGYVQEG-------------------------NVEEAERLFWRMPE 141
              +     W  +  G    G                          +  +E +F  M  
Sbjct: 213 CAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGT 272

Query: 142 KNVVSWTVMLGGLLKDSRVEDARKLF-----------DMM-------------------- 170
           KN VSW  ++   +++   E A  L+           D M                    
Sbjct: 273 KNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSI 332

Query: 171 ---PVKDVVAVTNMIGG-----YCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRV 222
               VK  V  T  +G      Y + G +E++   FDEMP++N+VT  +++ GYA   +V
Sbjct: 333 HAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQV 392

Query: 223 DVARKLFEVM------PERNEVSWTAMLMGYTHSGRMREASEFFDAM-------PVKPVV 269
           D+A  LFE M      P  N +++ ++L   + +G +    + FD+M       P     
Sbjct: 393 DMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHY 452

Query: 270 ACNEMIMGFGFDGDVDRAKAVFEKM 294
           +C  ++   G  G V+RA    +KM
Sbjct: 453 SC--IVDMLGRAGMVERAYEFIKKM 475



 Score = 66.2 bits (160), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 97/240 (40%), Gaps = 58/240 (24%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLF------- 74
            G I  Y +  QI ++  +F E     +   SW ++VAAY Q H+  +A  L+       
Sbjct: 248 NGLIDFYGKCKQIRSSEIIFTEMGT--KNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDI 305

Query: 75  -ETTP-------------------------------EKNIVSWNGMVSGFVKNGMVAEAR 102
            ET+                                E+ I   + +V  + K G + ++ 
Sbjct: 306 VETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSE 365

Query: 103 RVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM------PEKNVVSWTVMLGGLLK 156
           + FD MP +N+V+  S++ GY  +G V+ A  LF  M      P  N +++  +L    +
Sbjct: 366 QAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSR 425

Query: 157 DSRVEDARKLFDMM--------PVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVT 208
              VE+  K+FD M          +    + +M+G     G +E A     +MP +  ++
Sbjct: 426 AGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLG---RAGMVERAYEFIKKMPIQPTIS 482



 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 75/173 (43%), Gaps = 16/173 (9%)

Query: 47  IHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFD 106
           + RT    +A+V  Y +      +   F+  PEKN+V+ N ++ G+   G V  A  +F+
Sbjct: 341 VERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFE 400

Query: 107 AM------PVRNVVSWTSMVRGYVQEGNVEEAERLFWRMP-----EKNVVSWTVMLGGLL 155
            M      P  N +++ S++    + G VE   ++F  M      E     ++ ++  L 
Sbjct: 401 EMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLG 460

Query: 156 KDSRVEDARKLFDMMPVKDVVAVTNMIGGYCE-EGR----LEEARALFDEMPK 203
           +   VE A +    MP++  ++V   +   C   G+    L  A  LF   PK
Sbjct: 461 RAGMVERAYEFIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPK 513


>AT4G14050.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:8103645-8105483 REVERSE
           LENGTH=612
          Length = 612

 Score =  391 bits (1005), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 219/625 (35%), Positives = 343/625 (54%), Gaps = 57/625 (9%)

Query: 86  NGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVV 145
           N +V+ + K G  + A +VFD MP R+ ++W S++                  + + N+ 
Sbjct: 42  NTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTA----------------LNQANLS 85

Query: 146 SWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRN 205
             T+ +             +  D +    V A  N+  G  + GR      +  E     
Sbjct: 86  GKTLSV---FSSVGSSSGLRPDDFVFSALVKACANL--GSIDHGRQVHCHFIVSEYANDE 140

Query: 206 VVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPV 265
           VV  +++V  YA+   ++ A+ +F+ +  +N +SWTAM+ GY  SGR  EA E F  +PV
Sbjct: 141 VVK-SSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPV 199

Query: 266 KPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARM 325
           K +                                +W+A+I  + + G  LEA  +F  M
Sbjct: 200 KNLY-------------------------------SWTALISGFVQSGKGLEAFSVFTEM 228

Query: 326 QREGAALNFPXXXXXXXXXXXXXXXD-HGRQVHARLVRSEFDQDLYVASALITMYVKCGD 384
           +RE   +  P                  GRQVH  ++   FD  +++++ALI MY KC D
Sbjct: 229 RRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSD 288

Query: 385 LVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSA 444
           ++ AK IF+R   +DVV W S+I G +QHG  E+AL ++ DM   GV P++++F+G++ A
Sbjct: 289 VIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYA 348

Query: 445 CSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAI 504
           CS+ G V++GRE+F+SM   Y + P ++HY C++DLLGR+G +++A  ++  MP  PD  
Sbjct: 349 CSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEP 408

Query: 505 VWGSLLGACRTHMKLDLA-EVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKI 563
            W +LL AC+   +  +   +A   ++  + K+   Y+LLS++YAS   W  V   R K+
Sbjct: 409 TWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGKVSEARRKL 468

Query: 564 KTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLR-DAGYSPDHSF 622
               V K PG+S +EV K+  +F  G+ + HP +  I ++L++L+  +R   GY PD S+
Sbjct: 469 GEMEVRKDPGHSSVEVRKETEVFYAGETS-HPLKEDIFRLLKKLEEEMRIRNGYVPDTSW 527

Query: 623 VLHDVEEEEKTHSLGYHSEKLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTG 682
           +LHD++E+EK   L +HSE+ A+AYGLLK   G PIR++KNLRVCGDCH  +K I+++T 
Sbjct: 528 ILHDMDEQEKEKLLFWHSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITE 587

Query: 683 REIIVRDANRFHHFKDGYCSCKDYW 707
           REIIVRDA R+HHFK G CSC D+W
Sbjct: 588 REIIVRDATRYHHFKGGKCSCNDFW 612



 Score =  112 bits (280), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 154/311 (49%), Gaps = 31/311 (9%)

Query: 29  ARIGQIENARKVFDETPHIHRTTSSW-------NAMVAAYFQAHQPHQAVTLFETTPEKN 81
           A +G I++ R+V     H H   S +       +++V  Y +    + A  +F++   KN
Sbjct: 116 ANLGSIDHGRQV-----HCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKN 170

Query: 82  IVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPE 141
            +SW  MVSG+ K+G   EA  +F  +PV+N+ SWT+++ G+VQ G   EA  +F  M  
Sbjct: 171 TISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRR 230

Query: 142 KNV-----VSWTVMLGGLLKDSRVEDARKLFDM---MPVKDVVAVTN-MIGGYCEEGRLE 192
           + V     +  + ++G     +     R++  +   +     V ++N +I  Y +   + 
Sbjct: 231 ERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVI 290

Query: 193 EARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYT 248
            A+ +F  M  R+VV+WT+++ G A++ + + A  L++ M       NEV++  ++   +
Sbjct: 291 AAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACS 350

Query: 249 HSGRMREASEFFDAMP----VKPVVACNEMIMG-FGFDGDVDRAKAVFEKMR-ERDDGTW 302
           H G + +  E F +M     ++P +     ++   G  G +D A+ +   M    D+ TW
Sbjct: 351 HVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTW 410

Query: 303 SAMIKVYERKG 313
           +A++   +R+G
Sbjct: 411 AALLSACKRQG 421



 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 92/204 (45%), Gaps = 12/204 (5%)

Query: 353 GRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQ 412
            + +HA +V+    Q   +A+ L+ +Y KCG    A  +F+  P +D + W S++T  +Q
Sbjct: 22  AKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQ 81

Query: 413 HGL-GEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGI 471
             L G+           SG+ PDD  F  ++ AC+  G +  GR++     C + V    
Sbjct: 82  ANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQV----HCHFIVSEYA 137

Query: 472 EH---YACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEK 528
                 + +VD+  + G +N A  + + + ++ + I W +++     + K    E A+E 
Sbjct: 138 NDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVK-NTISWTAMVSG---YAKSGRKEEALEL 193

Query: 529 LAQLEPKNAGPYVLLSHMYASKGR 552
              L  KN   +  L   +   G+
Sbjct: 194 FRILPVKNLYSWTALISGFVQSGK 217


>AT5G04780.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:1384540-1386447 FORWARD
           LENGTH=635
          Length = 635

 Score =  390 bits (1003), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/548 (38%), Positives = 318/548 (58%), Gaps = 21/548 (3%)

Query: 174 DVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMP 233
           DV  +  +I  Y + G +E AR +FD M +R++V+W TM+  Y RNR    A  +F  M 
Sbjct: 95  DVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEM- 153

Query: 234 ERNEVSWTAMLMGYTHSGRMREASEFFDAMPVK-----PVVACNEMIMGFGFD------- 281
            RNE         +T S  +       DA+  K      V  C ++ +  G         
Sbjct: 154 -RNE---GFKFSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAK 209

Query: 282 -GDVDRAKAVFEKMRERDDGTWSAMIKVY-ERKGFELEALGLFARMQREGAALNFPXXXX 339
            G +  A  VFE M+++   TWS+M+  Y + K +E EAL L+ R QR     N      
Sbjct: 210 CGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYE-EALLLYRRAQRMSLEQNQFTLSS 268

Query: 340 XXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKD 399
                        G+Q+HA + +S F  +++VAS+ + MY KCG L  +  IF+    K+
Sbjct: 269 VICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKN 328

Query: 400 VVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFE 459
           + +WN++I+G+++H   +E + +F  M   G+ P++++F  +LS C ++G V+EGR  F+
Sbjct: 329 LELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFK 388

Query: 460 SMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKL 519
            M+  Y + P + HY+CMVD+LGRAG +++A E+++ +P +P A +WGSLL +CR +  L
Sbjct: 389 LMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNL 448

Query: 520 DLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEV 579
           +LAEVA EKL +LEP+NAG +VLLS++YA+  +WE++   R+ ++   V K+ G SWI++
Sbjct: 449 ELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDI 508

Query: 580 EKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDVEEEEKTHSLGYH 639
           + K H F  G++  HP    I   L+ L    R  GY P     LHDVE  +K   L  H
Sbjct: 509 KDKVHTFSVGESG-HPRIREICSTLDNLVIKFRKFGYKPSVEHELHDVEIGKKEELLMQH 567

Query: 640 SEKLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIVRDANRFHHFKDG 699
           SEKLA+ +GL+ +PE  P+R+MKNLR+C DCH  +K  +  T R IIVRD NRFHHF DG
Sbjct: 568 SEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAASMATRRFIIVRDVNRFHHFSDG 627

Query: 700 YCSCKDYW 707
           +CSC D+W
Sbjct: 628 HCSCGDFW 635



 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 136/290 (46%), Gaps = 53/290 (18%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLF---------- 74
           I+ Y++ G +E AR+VFD    + R+  SWN M+  Y +     +A+ +F          
Sbjct: 103 INAYSKCGFVELARQVFDGM--LERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKF 160

Query: 75  -----------------------------ETTPEKNIVSWNGMVSGFVKNGMVAEARRVF 105
                                        +T  + N+     ++  + K GM+ +A +VF
Sbjct: 161 SEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVF 220

Query: 106 DAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMP----EKNVVSWTVMLGGLLKDSRVE 161
           ++M  ++ V+W+SMV GYVQ  N EEA  L+ R      E+N  + + ++      + + 
Sbjct: 221 ESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALI 280

Query: 162 DARKLFDMMPV----KDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYA 217
           + +++  ++       +V   ++ +  Y + G L E+  +F E+ ++N+  W T++SG+A
Sbjct: 281 EGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFA 340

Query: 218 RNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAM 263
           ++ R      LFE M +     NEV+++++L    H+G + E   FF  M
Sbjct: 341 KHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLM 390



 Score = 84.3 bits (207), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/351 (21%), Positives = 155/351 (44%), Gaps = 22/351 (6%)

Query: 79  EKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWR 138
           E ++   N +++ + K G V  AR+VFD M  R++VSW +M+  Y +     EA  +F  
Sbjct: 93  EGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLE 152

Query: 139 MPEKNVVSWTVMLGGLLKDSRVE-DAR--KLFDMMPVKDVVAV-----TNMIGGYCEEGR 190
           M  +        +  +L    V  DA   K    + VK  + +     T ++  Y + G 
Sbjct: 153 MRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGM 212

Query: 191 LEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLF----EVMPERNEVSWTAMLMG 246
           +++A  +F+ M  ++ VTW++MV+GY +N+  + A  L+     +  E+N+ + ++++  
Sbjct: 213 IKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICA 272

Query: 247 YTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFD-----GDVDRAKAVFEKMRERDDGT 301
            ++   + E  +   A+  K     N  +     D     G +  +  +F +++E++   
Sbjct: 273 CSNLAALIEGKQ-MHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLEL 331

Query: 302 WSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLV 361
           W+ +I  + +     E + LF +MQ++G   N                 + GR+   +L+
Sbjct: 332 WNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFF-KLM 390

Query: 362 RSEFDQDLYVA--SALITMYVKCGDLVRAKWIFNRYPLKDVV-MWNSMITG 409
           R+ +     V   S ++ +  + G L  A  +    P      +W S++  
Sbjct: 391 RTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLAS 441



 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 84/160 (52%), Gaps = 2/160 (1%)

Query: 353 GRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQ 412
            +  H +++R + + D+ + + LI  Y KCG +  A+ +F+    + +V WN+MI  Y++
Sbjct: 80  AKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTR 139

Query: 413 HGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIE 472
           + +  EAL++F +M   G    + +   VLSAC  +    E +++   +  K  ++  + 
Sbjct: 140 NRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKL-HCLSVKTCIDLNLY 198

Query: 473 HYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGA 512
               ++DL  + G + DAV++ E M  +  ++ W S++  
Sbjct: 199 VGTALLDLYAKCGMIKDAVQVFESMQ-DKSSVTWSSMVAG 237



 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 110/241 (45%), Gaps = 20/241 (8%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLF----ETT 77
           T  +  YA+ G I++A +VF+      +++ +W++MVA Y Q     +A+ L+      +
Sbjct: 201 TALLDLYAKCGMIKDAVQVFESMQ--DKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMS 258

Query: 78  PEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPV----RNVVSWTSMVRGYVQEGNVEEAE 133
            E+N  + + ++        + E +++   +       NV   +S V  Y + G++ E+ 
Sbjct: 259 LEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESY 318

Query: 134 RLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDV----VAVTNMIGGYCEEG 189
            +F  + EKN+  W  ++ G  K +R ++   LF+ M    +    V  ++++      G
Sbjct: 319 IIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTG 378

Query: 190 RLEEARALFDEMPKR-----NVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVS-WTAM 243
            +EE R  F  M        NVV ++ MV    R   +  A +L + +P     S W ++
Sbjct: 379 LVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSL 438

Query: 244 L 244
           L
Sbjct: 439 L 439



 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 106/233 (45%), Gaps = 17/233 (7%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEA----RRVFDAMPV 110
            A++  Y +      AV +FE+  +K+ V+W+ MV+G+V+N    EA    RR       
Sbjct: 201 TALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLE 260

Query: 111 RNVVSWTSMVRGYVQEGNVEEAERLFWRMPE----KNVVSWTVMLGGLLKDSRVEDARKL 166
           +N  + +S++        + E +++   + +     NV   +  +    K   + ++  +
Sbjct: 261 QNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYII 320

Query: 167 FDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRRV 222
           F  +  K++     +I G+ +  R +E   LF++M +     N VT+++++S       V
Sbjct: 321 FSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLV 380

Query: 223 DVARKLFEVMPER-----NEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVA 270
           +  R+ F++M        N V ++ M+     +G + EA E   ++P  P  +
Sbjct: 381 EEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTAS 433


>AT3G49710.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:18437845-18440010 FORWARD
           LENGTH=721
          Length = 721

 Score =  390 bits (1002), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 238/686 (34%), Positives = 377/686 (54%), Gaps = 28/686 (4%)

Query: 47  IHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFD 106
           +  +T   N  V  Y +  +   A   F +T E N+ S+N +V  + K+  +  AR++FD
Sbjct: 39  VASSTYLSNHFVNLYSKCGRLSYARAAFYSTEEPNVFSYNVIVKAYAKDSKIHIARQLFD 98

Query: 107 AMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKD--SRVEDAR 164
            +P  + VS+ +++ GY        A  LF RM +         L GL+     RV+  +
Sbjct: 99  EIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGFTLSGLIAACCDRVDLIK 158

Query: 165 KL--FDMMPVKDVVAVTN--MIGGYCEEGRLEEARALFDEMPK-RNVVTWTTMVSGYARN 219
           +L  F +    D  +  N   +  Y + G L EA ++F  M + R+ V+W +M+  Y ++
Sbjct: 159 QLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDELRDEVSWNSMIVAYGQH 218

Query: 220 RRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMI 275
           +    A  L++ M  +    +  +  ++L   T    +    +F   + +K     N  +
Sbjct: 219 KEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKL-IKAGFHQNSHV 277

Query: 276 ----MGF-----GFDGDVDRAKAVFEKMRERDDGTWSAMIKVYE-RKGFELEALGLFARM 325
               + F     G DG  D  K VF+++   D   W+ MI  Y   +    EA+  F +M
Sbjct: 278 GSGLIDFYSKCGGCDGMYDSEK-VFQEILSPDLVVWNTMISGYSMNEELSEEAVKSFRQM 336

Query: 326 QREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQD-LYVASALITMYVKCGD 384
           QR G   +                    +Q+H   ++S    + + V +ALI++Y K G+
Sbjct: 337 QRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSHIPSNRISVNNALISLYYKSGN 396

Query: 385 LVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSA 444
           L  A+W+F+R P  + V +N MI GY+QHG G EAL +++ M  SG+ P+ I+F+ VLSA
Sbjct: 397 LQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSA 456

Query: 445 CSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAI 504
           C++ GKV EG+E F +MK  +++EP  EHY+CM+DLLGRAG++ +A   ++ MP +P ++
Sbjct: 457 CAHCGKVDEGQEYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSV 516

Query: 505 VWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIK 564
            W +LLGACR H  + LAE A  +L  ++P  A PYV+L++MYA   +WE++  VR+ ++
Sbjct: 517 AWAALLGACRKHKNMALAERAANELMVMQPLAATPYVMLANMYADARKWEEMASVRKSMR 576

Query: 565 TRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVL 624
            + + K PG SWIEV+KK H+FV  D + HP    + + LE +   ++  GY  D  + +
Sbjct: 577 GKRIRKKPGCSWIEVKKKKHVFVAEDWS-HPMIREVNEYLEEMMKKMKKVGYVMDKKWAM 635

Query: 625 ---HDVEEEEKTHSLGYHSEKLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVT 681
               +  E ++   LG+HSEKLA+A+GL+   +G  + V+KNLR+CGDCH+AIK ++ V 
Sbjct: 636 VKEDEAGEGDEEMRLGHHSEKLAVAFGLMSTRDGEELVVVKNLRICGDCHNAIKFMSAVA 695

Query: 682 GREIIVRDANRFHHFKDGYCSCKDYW 707
           GREIIVRD  RFH FKDG CSC DYW
Sbjct: 696 GREIIVRDNLRFHCFKDGKCSCGDYW 721



 Score = 75.9 bits (185), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/354 (22%), Positives = 148/354 (41%), Gaps = 67/354 (18%)

Query: 17  FQCTSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFET 76
           +   +   ++ Y++ G +  A  VF     + R   SWN+M+ AY Q  +  +A+ L++ 
Sbjct: 172 YSSVNNAFVTYYSKGGLLREAVSVFYGMDEL-RDEVSWNSMIVAYGQHKEGAKALALYKE 230

Query: 77  TPEKN--------------IVSWNGMV-----------SGFVKNGMVA------------ 99
              K               + S + ++           +GF +N  V             
Sbjct: 231 MIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGG 290

Query: 100 -----EARRVFDAMPVRNVVSWTSMVRGY-VQEGNVEEAERLFWRMP-------EKNVVS 146
                ++ +VF  +   ++V W +M+ GY + E   EEA + F +M        + + V 
Sbjct: 291 CDGMYDSEKVFQEILSPDLVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVC 350

Query: 147 WTVMLGGLLKDSRVEDARKLF--DMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKR 204
            T     L   S+ +    L     +P   +     +I  Y + G L++AR +FD MP+ 
Sbjct: 351 VTSACSNLSSPSQCKQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMPEL 410

Query: 205 NVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFF 260
           N V++  M+ GYA++     A  L++ M +     N++++ A+L    H G++ E  E+F
Sbjct: 411 NAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYF 470

Query: 261 DAM-------PVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDG-TWSAMI 306
           + M       P     +C  MI   G  G ++ A+   + M  +     W+A++
Sbjct: 471 NTMKETFKIEPEAEHYSC--MIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALL 522


>AT1G18485.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:6363172-6366084 FORWARD
           LENGTH=970
          Length = 970

 Score =  389 bits (1000), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 248/749 (33%), Positives = 371/749 (49%), Gaps = 100/749 (13%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAM------ 108
           NA+V+ Y        A+ LF+  PE+N+VSWN M+  F  NG   E+  +   M      
Sbjct: 226 NALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGD 285

Query: 109 --------------PV----------RNVVSWTSMVR-------------GYVQEGNVEE 131
                         PV          + V  W   +R              Y + G +  
Sbjct: 286 GAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITN 345

Query: 132 AERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMM--------PVK-DVVAVTNMI 182
           A+ +F     KNVVSW  M+GG    S   D    FD++         VK D V + N +
Sbjct: 346 AQMIFKMNNNKNVVSWNTMVGGF---SAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAV 402

Query: 183 GGYCEEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMPERNEV 238
                E  L   + L     K+    N +     V+ YA+   +  A+++F  +  +   
Sbjct: 403 PVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVN 462

Query: 239 SWTAMLMGYTHSG----------RMREASEFFDAMPVKPVV-ACNEM--------IMGFG 279
           SW A++ G+  S           +M+ +    D+  V  ++ AC+++        + GF 
Sbjct: 463 SWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFI 522

Query: 280 FD--------------------GDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEAL 319
                                 G++   +A+F+ M ++   +W+ +I  Y + GF   AL
Sbjct: 523 IRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRAL 582

Query: 320 GLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMY 379
           G+F +M   G  L                    GR+ HA  ++   + D ++A +LI MY
Sbjct: 583 GVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMY 642

Query: 380 VKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFI 439
            K G + ++  +FN    K    WN+MI GY  HGL +EA+ +F +M  +G  PDD++F+
Sbjct: 643 AKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFL 702

Query: 440 GVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIV-EKMP 498
           GVL+AC++SG + EG    + MK  + ++P ++HYAC++D+LGRAGQ++ A+ +V E+M 
Sbjct: 703 GVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMS 762

Query: 499 MEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEV 558
            E D  +W SLL +CR H  L++ E    KL +LEP+    YVLLS++YA  G+WEDV  
Sbjct: 763 EEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRK 822

Query: 559 VREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSP 618
           VR+++   S+ K  G SWIE+ +K   FV G+      +  I  +   L+  +   GY P
Sbjct: 823 VRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEE-IKSLWSILEMKISKMGYRP 881

Query: 619 DHSFVLHDVEEEEKTHSLGYHSEKLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIA 678
           D   V HD+ EEEK   L  HSEKLA+ YGL+K  EG  IRV KNLR+C DCH+A KLI+
Sbjct: 882 DTMSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLIS 941

Query: 679 KVTGREIIVRDANRFHHFKDGYCSCKDYW 707
           KV  REI+VRD  RFHHFK+G CSC DYW
Sbjct: 942 KVMEREIVVRDNKRFHHFKNGVCSCGDYW 970



 Score =  130 bits (328), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 120/576 (20%), Positives = 231/576 (40%), Gaps = 98/576 (17%)

Query: 57  MVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVF-------DAMP 109
           ++  Y     P  +  +F+    KN+  WN ++S + +N +  E    F       D +P
Sbjct: 126 IITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLP 185

Query: 110 ---------------------------------VRNVVSWTSMVRGYVQEGNVEEAERLF 136
                                            V +V    ++V  Y   G V +A +LF
Sbjct: 186 DHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLF 245

Query: 137 WRMPEKNVVSWTVM----------------LGGLLKD----SRVEDARKLFDMMPV---- 172
             MPE+N+VSW  M                LG ++++    + + D   L  ++PV    
Sbjct: 246 DIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCARE 305

Query: 173 -------------------KDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMV 213
                              K++V    ++  Y + G +  A+ +F     +NVV+W TMV
Sbjct: 306 REIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMV 365

Query: 214 SGYA----RNRRVDVARKLFEVMPE--RNEVSWTAMLMGYTHSGRMREASEF----FDAM 263
            G++     +   DV R++     +   +EV+    +    H   +    E         
Sbjct: 366 GGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQE 425

Query: 264 PVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFA 323
            V   +  N  +  +   G +  A+ VF  +R +   +W+A+I  + +      +L    
Sbjct: 426 FVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHL 485

Query: 324 RMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCG 383
           +M+  G   +                   G++VH  ++R+  ++DL+V  +++++Y+ CG
Sbjct: 486 QMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCG 545

Query: 384 DLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLS 443
           +L   + +F+    K +V WN++ITGY Q+G  + AL VFR M L G+    IS + V  
Sbjct: 546 ELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFG 605

Query: 444 ACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDA 503
           ACS    ++ GRE   +   K+ +E        ++D+  + G +  + ++   +  E   
Sbjct: 606 ACSLLPSLRLGREA-HAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLK-EKST 663

Query: 504 IVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGP 539
             W +++     H    LA+ A++   +++     P
Sbjct: 664 ASWNAMIMGYGIH---GLAKEAIKLFEEMQRTGHNP 696



 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 147/336 (43%), Gaps = 34/336 (10%)

Query: 151 LGGLLKDS----RVEDARKLFDMMP-----VKDVVAVTNMIGGYCEEGRLEEARALFDEM 201
           LG LL+ S     +E  RK+  ++        D V  T +I  Y   G  +++R +FD +
Sbjct: 87  LGLLLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDAL 146

Query: 202 PKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMG-YTHSGRMREASEFF 260
             +N+  W  ++S Y+RN   D   + F  M     +S T +L   +T+   ++  +   
Sbjct: 147 RSKNLFQWNAVISSYSRNELYDEVLETFIEM-----ISTTDLLPDHFTYPCVIKACAGMS 201

Query: 261 D-------------AMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIK 307
           D                V+ V   N ++  +G  G V  A  +F+ M ER+  +W++MI+
Sbjct: 202 DVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIR 261

Query: 308 VYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDH----GRQVHARLVRS 363
           V+   GF  E+  L   M  E     F                +     G+ VH   V+ 
Sbjct: 262 VFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKL 321

Query: 364 EFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVF 423
             D++L + +AL+ MY KCG +  A+ IF     K+VV WN+M+ G+S  G      +V 
Sbjct: 322 RLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVL 381

Query: 424 RDMCLSG--VPPDDISFIGVLSACSYSGKVKEGREI 457
           R M   G  V  D+++ +  +  C +   +   +E+
Sbjct: 382 RQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKEL 417



 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/355 (21%), Positives = 154/355 (43%), Gaps = 76/355 (21%)

Query: 18  QCTSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQP------HQAV 71
           +  +   ++ YA+ G +  A++VF       +T +SWNA++  + Q++ P      H  +
Sbjct: 430 ELVANAFVASYAKCGSLSYAQRVFHGIRS--KTVNSWNALIGGHAQSNDPRLSLDAHLQM 487

Query: 72  TLFETTP---------------------------------EKNIVSWNGMVSGFVKNGMV 98
            +    P                                 E+++  +  ++S ++  G +
Sbjct: 488 KISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGEL 547

Query: 99  AEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGL---- 154
              + +FDAM  +++VSW +++ GY+Q G  + A  +F +M     V + + L G+    
Sbjct: 548 CTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQM-----VLYGIQLCGISMMP 602

Query: 155 ----------LKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKR 204
                     L+  R   A  L  ++   D     ++I  Y + G + ++  +F+ + ++
Sbjct: 603 VFGACSLLPSLRLGREAHAYALKHLLE-DDAFIACSLIDMYAKNGSITQSSKVFNGLKEK 661

Query: 205 NVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFF 260
           +  +W  M+ GY  +     A KLFE M       +++++  +L    HSG + E   + 
Sbjct: 662 STASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYL 721

Query: 261 DAMP----VKPVV---ACNEMIMGFGFDGDVDRA-KAVFEKMRERDD-GTWSAMI 306
           D M     +KP +   AC  +I   G  G +D+A + V E+M E  D G W +++
Sbjct: 722 DQMKSSFGLKPNLKHYAC--VIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLL 774



 Score = 79.7 bits (195), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 113/252 (44%), Gaps = 13/252 (5%)

Query: 269 VACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQRE 328
           V C  +I  +   G  D ++ VF+ +R ++   W+A+I  Y R     E L  F  M   
Sbjct: 121 VLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMIST 180

Query: 329 GAAL----NFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGD 384
              L     +P                 G  VH  +V++   +D++V +AL++ Y   G 
Sbjct: 181 TDLLPDHFTYPCVIKACAGMSDVGI---GLAVHGLVVKTGLVEDVFVGNALVSFYGTHGF 237

Query: 385 LVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCL----SGVPPDDISFIG 440
           +  A  +F+  P +++V WNSMI  +S +G  EE+  +  +M          PD  + + 
Sbjct: 238 VTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVT 297

Query: 441 VLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPME 500
           VL  C+   ++  G+ +      K +++  +     ++D+  + G + +A +++ KM   
Sbjct: 298 VLPVCAREREIGLGKGV-HGWAVKLRLDKELVLNNALMDMYSKCGCITNA-QMIFKMNNN 355

Query: 501 PDAIVWGSLLGA 512
            + + W +++G 
Sbjct: 356 KNVVSWNTMVGG 367



 Score = 66.2 bits (160), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 107/238 (44%), Gaps = 29/238 (12%)

Query: 275 IMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNF 334
           I  F   GD+D++    ++    D+ +  A + V E  G  L+A G     +R+   +  
Sbjct: 50  ISNFCETGDLDKSFRTVQEFVGDDESSSDAFLLVREALGLLLQASG-----KRKDIEM-- 102

Query: 335 PXXXXXXXXXXXXXXXDHGRQVHARLVRS-EFDQDLYVASALITMYVKCGDLVRAKWIFN 393
                             GR++H  +  S     D  + + +ITMY  CG    ++++F+
Sbjct: 103 ------------------GRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFD 144

Query: 394 RYPLKDVVMWNSMITGYSQHGLGEEALNVFRDM-CLSGVPPDDISFIGVLSACSYSGKVK 452
               K++  WN++I+ YS++ L +E L  F +M   + + PD  ++  V+ AC+    V 
Sbjct: 145 ALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVG 204

Query: 453 EGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLL 510
            G  +   +  K  +   +     +V   G  G V DA+++ + MP E + + W S++
Sbjct: 205 IGLAV-HGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMP-ERNLVSWNSMI 260


>AT5G39680.1 | Symbols: EMB2744 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:15884236-15886368 REVERSE
           LENGTH=710
          Length = 710

 Score =  387 bits (994), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 230/646 (35%), Positives = 349/646 (54%), Gaps = 32/646 (4%)

Query: 86  NGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM-----P 140
           N +++ +VK      AR++FD MP RNVVSW +M++GY   G   E  +LF  M      
Sbjct: 73  NSLINLYVKCRETVRARKLFDLMPERNVVSWCAMMKGYQNSGFDFEVLKLFKSMFFSGES 132

Query: 141 EKNVVSWTVMLGGLLKDSRVEDARKL------FDMMPVKDVVAVTNMIGGYCEEGRLEEA 194
             N    TV+        R+E+ ++       + ++  + V      +   C  G  E  
Sbjct: 133 RPNEFVATVVFKSCSNSGRIEEGKQFHGCFLKYGLISHEFVRNTLVYMYSLCS-GNGEAI 191

Query: 195 RALFDEMPKRNVVTWTTMVSGY----ARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHS 250
           R L D++P  ++  +++ +SGY    A    +DV RK        N +++ + L  +++ 
Sbjct: 192 RVL-DDLPYCDLSVFSSALSGYLECGAFKEGLDVLRKTANEDFVWNNLTYLSSLRLFSNL 250

Query: 251 GRMREASEFFDAMP----VKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMI 306
             +  A +    M        V AC  +I  +G  G V  A+ VF+    ++    + ++
Sbjct: 251 RDLNLALQVHSRMVRFGFNAEVEACGALINMYGKCGKVLYAQRVFDDTHAQNIFLNTTIM 310

Query: 307 KVY-ERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEF 365
             Y + K FE EAL LF++M  +    N                   G  +H  +++S +
Sbjct: 311 DAYFQDKSFE-EALNLFSKMDTKEVPPNEYTFAILLNSIAELSLLKQGDLLHGLVLKSGY 369

Query: 366 DQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRD 425
              + V +AL+ MY K G +  A+  F+    +D+V WN+MI+G S HGLG EAL  F  
Sbjct: 370 RNHVMVGNALVNMYAKSGSIEDARKAFSGMTFRDIVTWNTMISGCSHHGLGREALEAFDR 429

Query: 426 MCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAG 485
           M  +G  P+ I+FIGVL ACS+ G V++G   F  +  K+ V+P I+HY C+V LL +AG
Sbjct: 430 MIFTGEIPNRITFIGVLQACSHIGFVEQGLHYFNQLMKKFDVQPDIQHYTCIVGLLSKAG 489

Query: 486 QVNDAVEIVEKMPMEPDAIVWGSLLGAC--RTHMKL--DLAEVAVEKLAQLEPKNAGPYV 541
              DA + +   P+E D + W +LL AC  R + +L   +AE A+EK     P ++G YV
Sbjct: 490 MFKDAEDFMRTAPIEWDVVAWRTLLNACYVRRNYRLGKKVAEYAIEKY----PNDSGVYV 545

Query: 542 LLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIM 601
           LLS+++A    WE V  VR  +  R V K PG SWI +  + H+F+  DN  HPE  +I 
Sbjct: 546 LLSNIHAKSREWEGVAKVRSLMNNRGVKKEPGVSWIGIRNQTHVFLAEDNQ-HPEITLIY 604

Query: 602 KMLERLDGLLRDAGYSPDHSFVLHDVEEEEKTHSLGYHSEKLAIAYGLLKVPEGMPIRVM 661
             ++ +   ++  GYSPD +   HDV+EE++  +L YHSEKLA+AYGL+K PE  P+ V 
Sbjct: 605 AKVKEVMSKIKPLGYSPDVAGAFHDVDEEQREDNLSYHSEKLAVAYGLIKTPEKSPLYVT 664

Query: 662 KNLRVCGDCHSAIKLIAKVTGREIIVRDANRFHHFKDGYCSCKDYW 707
           KN+R+C DCHSAIKLI+K++ R I++RD+NRFHHF DG CSC DYW
Sbjct: 665 KNVRICDDCHSAIKLISKISKRYIVIRDSNRFHHFLDGQCSCCDYW 710



 Score =  116 bits (291), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 157/354 (44%), Gaps = 13/354 (3%)

Query: 173 KDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDV-ARKLFEV 231
           +D   + ++I  Y +      AR LFD MP+RNVV+W  M+ GY +N   D    KLF+ 
Sbjct: 67  EDAYQINSLINLYVKCRETVRARKLFDLMPERNVVSWCAMMKGY-QNSGFDFEVLKLFKS 125

Query: 232 M-----PERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVAC----NEMIMGFGFDG 282
           M        NE   T +    ++SGR+ E  +F        +++     N ++  +    
Sbjct: 126 MFFSGESRPNEFVATVVFKSCSNSGRIEEGKQFHGCFLKYGLISHEFVRNTLVYMYSLCS 185

Query: 283 DVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXX 342
               A  V + +   D   +S+ +  Y   G   E L +  +   E    N         
Sbjct: 186 GNGEAIRVLDDLPYCDLSVFSSALSGYLECGAFKEGLDVLRKTANEDFVWNNLTYLSSLR 245

Query: 343 XXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVM 402
                   +   QVH+R+VR  F+ ++    ALI MY KCG ++ A+ +F+    +++ +
Sbjct: 246 LFSNLRDLNLALQVHSRMVRFGFNAEVEACGALINMYGKCGKVLYAQRVFDDTHAQNIFL 305

Query: 403 WNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMK 462
             +++  Y Q    EEALN+F  M    VPP++ +F  +L++ +    +K+G ++   + 
Sbjct: 306 NTTIMDAYFQDKSFEEALNLFSKMDTKEVPPNEYTFAILLNSIAELSLLKQG-DLLHGLV 364

Query: 463 CKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTH 516
            K      +     +V++  ++G + DA +    M    D + W +++  C  H
Sbjct: 365 LKSGYRNHVMVGNALVNMYAKSGSIEDARKAFSGMTFR-DIVTWNTMISGCSHH 417



 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 84/163 (51%), Gaps = 5/163 (3%)

Query: 353 GRQVHARLV---RSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITG 409
           G  +HA L+   +S   +D Y  ++LI +YVKC + VRA+ +F+  P ++VV W +M+ G
Sbjct: 50  GESIHAHLIVTNQSSRAEDAYQINSLINLYVKCRETVRARKLFDLMPERNVVSWCAMMKG 109

Query: 410 YSQHGLGEEALNVFRDMCLSGVP-PDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVE 468
           Y   G   E L +F+ M  SG   P++     V  +CS SG+++EG++ F     KY + 
Sbjct: 110 YQNSGFDFEVLKLFKSMFFSGESRPNEFVATVVFKSCSNSGRIEEGKQ-FHGCFLKYGLI 168

Query: 469 PGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLG 511
                   +V +        +A+ +++ +P    ++   +L G
Sbjct: 169 SHEFVRNTLVYMYSLCSGNGEAIRVLDDLPYCDLSVFSSALSG 211



 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 114/286 (39%), Gaps = 62/286 (21%)

Query: 7   TLRVCMVQVRF----QCTSTGA-ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVA-A 60
            L+V    VRF    +  + GA I+ Y + G++  A++VFD+T   H      N  +  A
Sbjct: 256 ALQVHSRMVRFGFNAEVEACGALINMYGKCGKVLYAQRVFDDT---HAQNIFLNTTIMDA 312

Query: 61  YFQAHQPHQAVTLF------ETTPEK---------------------------------N 81
           YFQ     +A+ LF      E  P +                                 +
Sbjct: 313 YFQDKSFEEALNLFSKMDTKEVPPNEYTFAILLNSIAELSLLKQGDLLHGLVLKSGYRNH 372

Query: 82  IVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPE 141
           ++  N +V+ + K+G + +AR+ F  M  R++V+W +M+ G    G   EA   F RM  
Sbjct: 373 VMVGNALVNMYAKSGSIEDARKAFSGMTFRDIVTWNTMISGCSHHGLGREALEAFDRMIF 432

Query: 142 KNVVSWTVMLGGLLKDSR-----------VEDARKLFDMMPVKDVVAVTNMIGGYCEEGR 190
              +   +   G+L+                   K FD+ P  D+   T ++G   + G 
Sbjct: 433 TGEIPNRITFIGVLQACSHIGFVEQGLHYFNQLMKKFDVQP--DIQHYTCIVGLLSKAGM 490

Query: 191 LEEARALFDEMP-KRNVVTWTTMVSGYARNRRVDVARKLFEVMPER 235
            ++A       P + +VV W T+++     R   + +K+ E   E+
Sbjct: 491 FKDAEDFMRTAPIEWDVVAWRTLLNACYVRRNYRLGKKVAEYAIEK 536


>AT4G21065.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:11246375-11247763 FORWARD
           LENGTH=462
          Length = 462

 Score =  387 bits (993), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/437 (43%), Positives = 279/437 (63%), Gaps = 2/437 (0%)

Query: 272 NEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAA 331
           N ++  +   GDV  A  VF+KM E+D   W+++I  +   G   EAL L+  M  +G  
Sbjct: 27  NSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIK 86

Query: 332 LNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWI 391
            +                   G++VH  +++    ++L+ ++ L+ +Y +CG +  AK +
Sbjct: 87  PDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTL 146

Query: 392 FNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDM-CLSGVPPDDISFIGVLSACSYSGK 450
           F+    K+ V W S+I G + +G G+EA+ +F+ M    G+ P +I+F+G+L ACS+ G 
Sbjct: 147 FDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGM 206

Query: 451 VKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLL 510
           VKEG E F  M+ +Y++EP IEH+ CMVDLL RAGQV  A E ++ MPM+P+ ++W +LL
Sbjct: 207 VKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLL 266

Query: 511 GACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIK 570
           GAC  H   DLAE A  ++ QLEP ++G YVLLS+MYAS+ RW DV+ +R+++    V K
Sbjct: 267 GACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKK 326

Query: 571 LPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDVEEE 630
           +PG+S +EV  + H F+ GD + HP+   I   L+ + G LR  GY P  S V  DVEEE
Sbjct: 327 VPGHSLVEVGNRVHEFLMGDKS-HPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEE 385

Query: 631 EKTHSLGYHSEKLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIVRDA 690
           EK +++ YHSEK+AIA+ L+  PE  PI V+KNLRVC DCH AIKL++KV  REI+VRD 
Sbjct: 386 EKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDR 445

Query: 691 NRFHHFKDGYCSCKDYW 707
           +RFHHFK+G CSC+DYW
Sbjct: 446 SRFHHFKNGSCSCQDYW 462



 Score =  105 bits (261), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 95/158 (60%), Gaps = 2/158 (1%)

Query: 353 GRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQ 412
           G  +H+ ++RS F   +YV ++L+ +Y  CGD+  A  +F++ P KD+V WNS+I G+++
Sbjct: 7   GETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAE 66

Query: 413 HGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIE 472
           +G  EEAL ++ +M   G+ PD  + + +LSAC+  G +  G+ +   M  K  +   + 
Sbjct: 67  NGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYM-IKVGLTRNLH 125

Query: 473 HYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLL 510
               ++DL  R G+V +A  + ++M ++ +++ W SL+
Sbjct: 126 SSNVLLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLI 162



 Score = 90.9 bits (224), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 97/193 (50%), Gaps = 17/193 (8%)

Query: 86  NGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV- 144
           N ++  +   G VA A +VFD MP +++V+W S++ G+ + G  EEA  L+  M  K + 
Sbjct: 27  NSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIK 86

Query: 145 ---------VSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEAR 195
                    +S    +G L    RV     +  +   +++ +   ++  Y   GR+EEA+
Sbjct: 87  PDGFTIVSLLSACAKIGALTLGKRVH--VYMIKVGLTRNLHSSNVLLDLYARCGRVEEAK 144

Query: 196 ALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERN-----EVSWTAMLMGYTHS 250
            LFDEM  +N V+WT+++ G A N     A +LF+ M         E+++  +L   +H 
Sbjct: 145 TLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHC 204

Query: 251 GRMREASEFFDAM 263
           G ++E  E+F  M
Sbjct: 205 GMVKEGFEYFRRM 217



 Score = 73.9 bits (180), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 119/253 (47%), Gaps = 19/253 (7%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNV- 113
           N+++  Y        A  +F+  PEK++V+WN +++GF +NG   EA  ++  M  + + 
Sbjct: 27  NSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIK 86

Query: 114 ---VSWTSMVRGYVQEGNVEEAERLFWRMPE----KNVVSWTVMLGGLLKDSRVEDARKL 166
               +  S++    + G +   +R+   M +    +N+ S  V+L    +  RVE+A+ L
Sbjct: 87  PDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTL 146

Query: 167 FDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRN-----VVTWTTMVSGYARNRR 221
           FD M  K+ V+ T++I G    G  +EA  LF  M          +T+  ++   +    
Sbjct: 147 FDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGM 206

Query: 222 VDVARKLFEVMPERNEVS-----WTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIM 276
           V    + F  M E  ++      +  M+     +G++++A E+  +MP++P V     ++
Sbjct: 207 VKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLL 266

Query: 277 G-FGFDGDVDRAK 288
           G     GD D A+
Sbjct: 267 GACTVHGDSDLAE 279



 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 86/182 (47%), Gaps = 13/182 (7%)

Query: 160 VEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNV----VTWTTMVSG 215
           V  A K+FD MP KD+VA  ++I G+ E G+ EEA AL+ EM  + +     T  +++S 
Sbjct: 39  VASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSA 98

Query: 216 YARNRRVDVARK----LFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVAC 271
            A+   + + ++    + +V   RN  S   +L  Y   GR+ EA   FD M  K  V+ 
Sbjct: 99  CAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSW 158

Query: 272 NEMIMGFGFDGDVDRAKAVFEKMRERD-----DGTWSAMIKVYERKGFELEALGLFARMQ 326
             +I+G   +G    A  +F+ M   +     + T+  ++      G   E    F RM+
Sbjct: 159 TSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMR 218

Query: 327 RE 328
            E
Sbjct: 219 EE 220



 Score = 71.2 bits (173), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 109/243 (44%), Gaps = 21/243 (8%)

Query: 28  YARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNI----V 83
           YA  G + +A KVFD+ P   +   +WN+++  + +  +P +A+ L+     K I     
Sbjct: 33  YANCGDVASAYKVFDKMP--EKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGF 90

Query: 84  SWNGMVSGFVKNGMVAEARRVFDAMP----VRNVVSWTSMVRGYVQEGNVEEAERLFWRM 139
           +   ++S   K G +   +RV   M      RN+ S   ++  Y + G VEEA+ LF  M
Sbjct: 91  TIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEM 150

Query: 140 PEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKD-----VVAVTNMIGGYCEEGRLEEA 194
            +KN VSWT ++ GL  +   ++A +LF  M   +      +    ++      G ++E 
Sbjct: 151 VDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEG 210

Query: 195 RALFDEMPKR-----NVVTWTTMVSGYARNRRVDVARKLFEVMP-ERNEVSWTAMLMGYT 248
              F  M +       +  +  MV   AR  +V  A +  + MP + N V W  +L   T
Sbjct: 211 FEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACT 270

Query: 249 HSG 251
             G
Sbjct: 271 VHG 273


>AT3G46790.1 | Symbols: CRR2 | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:17231975-17233948 REVERSE
           LENGTH=657
          Length = 657

 Score =  384 bits (985), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 218/613 (35%), Positives = 341/613 (55%), Gaps = 21/613 (3%)

Query: 114 VSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDA----RKLFDM 169
           +S   +++   +EG +++A R+  +    +  ++ +++      S + DA    R + D 
Sbjct: 47  ISNNQLIQSLCKEGKLKQAIRVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILDN 106

Query: 170 MPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTM-----VSGYARNRRVDV 224
              +D    T +IG Y + G ++ AR +FD+  KR +  W  +     ++G+     + +
Sbjct: 107 GSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEV-LGL 165

Query: 225 ARKLFEVMPERNEVSWTAMLMGYTHS----GRMREASEFFDAMPVKP----VVACNEMIM 276
             K+  +  E +  ++T +L     S      + +  E    +  +     V     ++ 
Sbjct: 166 YWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVD 225

Query: 277 GFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREG--AALNF 334
            +   G VD A  VF  M  R+  +WSAMI  Y + G   EAL  F  M RE   ++ N 
Sbjct: 226 MYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNS 285

Query: 335 PXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNR 394
                           + G+ +H  ++R   D  L V SAL+TMY +CG L   + +F+R
Sbjct: 286 VTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDR 345

Query: 395 YPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEG 454
              +DVV WNS+I+ Y  HG G++A+ +F +M  +G  P  ++F+ VL ACS+ G V+EG
Sbjct: 346 MHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEG 405

Query: 455 REIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACR 514
           + +FE+M   + ++P IEHYACMVDLLGRA ++++A ++V+ M  EP   VWGSLLG+CR
Sbjct: 406 KRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCR 465

Query: 515 THMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGY 574
            H  ++LAE A  +L  LEPKNAG YVLL+ +YA    W++V+ V++ ++ R + KLPG 
Sbjct: 466 IHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGR 525

Query: 575 SWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDVEEEEKTH 634
            W+EV +K + FV  D   +P    I   L +L   +++ GY P    VL+++E EEK  
Sbjct: 526 CWMEVRRKMYSFVSVD-EFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKER 584

Query: 635 SLGYHSEKLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIVRDANRFH 694
            +  HSEKLA+A+GL+   +G PIR+ KNLR+C DCH   K I+K   +EI+VRD NRFH
Sbjct: 585 IVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFH 644

Query: 695 HFKDGYCSCKDYW 707
            FK+G CSC DYW
Sbjct: 645 RFKNGVCSCGDYW 657



 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/356 (24%), Positives = 144/356 (40%), Gaps = 79/356 (22%)

Query: 21  STGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLF------ 74
           +T  I  Y+ +G ++ ARKVFD+T    RT   WNA+  A   A    + + L+      
Sbjct: 115 ATKLIGMYSDLGSVDYARKVFDKTRK--RTIYVWNALFRALTLAGHGEEVLGLYWKMNRI 172

Query: 75  -------------------ETTPE------------------KNIVSWNGMVSGFVKNGM 97
                              E T                     ++     +V  + + G 
Sbjct: 173 GVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGC 232

Query: 98  VAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM------PEKNVVSWTVML 151
           V  A  VF  MPVRNVVSW++M+  Y + G   EA R F  M         N V+   +L
Sbjct: 233 VDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVL 292

Query: 152 GGLLKDSRVEDA---------RKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMP 202
                 + +E           R L  ++PV     ++ ++  Y   G+LE  + +FD M 
Sbjct: 293 QACASLAALEQGKLIHGYILRRGLDSILPV-----ISALVTMYGRCGKLEVGQRVFDRMH 347

Query: 203 KRNVVTWTTMVSGYARNRRVDVARKLFEVM----PERNEVSWTAMLMGYTHSGRMREASE 258
            R+VV+W +++S Y  +     A ++FE M         V++ ++L   +H G + E   
Sbjct: 348 DRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKR 407

Query: 259 FFDAM----PVKPVV---ACNEMIMGFGFDGDVDRAKAVFEKMR-ERDDGTWSAMI 306
            F+ M     +KP +   AC  M+   G    +D A  + + MR E     W +++
Sbjct: 408 LFETMWRDHGIKPQIEHYAC--MVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLL 461



 Score = 82.8 bits (203), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 119/261 (45%), Gaps = 28/261 (10%)

Query: 96  GMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLL 155
           G V  AR+VFD    R +  W ++ R     G+ EE   L+W+M    V S       +L
Sbjct: 126 GSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVL 185

Query: 156 KDSRVEDARKLFDMMPVKDVVA-------------VTNMIGGYCEEGRLEEARALFDEMP 202
           K   V     +  +M  K++ A             +T ++  Y   G ++ A  +F  MP
Sbjct: 186 KAC-VASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMP 244

Query: 203 KRNVVTWTTMVSGYARNRRVDVARKLF-EVMPER-----NEVSWTAMLMGYTHSGRMREA 256
            RNVV+W+ M++ YA+N +   A + F E+M E      N V+  ++L        + + 
Sbjct: 245 VRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQG 304

Query: 257 SEFFDAM------PVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYE 310
                 +       + PV++   ++  +G  G ++  + VF++M +RD  +W+++I  Y 
Sbjct: 305 KLIHGYILRRGLDSILPVISA--LVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYG 362

Query: 311 RKGFELEALGLFARMQREGAA 331
             G+  +A+ +F  M   GA+
Sbjct: 363 VHGYGKKAIQIFEEMLANGAS 383


>AT5G13230.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:4222514-4224982 FORWARD
           LENGTH=822
          Length = 822

 Score =  382 bits (981), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 233/736 (31%), Positives = 376/736 (51%), Gaps = 57/736 (7%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYF-------------QAHQ--PH- 68
           ++ Y + G  ++A  +FDE P   R   S+  +   Y              + H+  PH 
Sbjct: 91  LNAYVKAGFDKDALNLFDEMPE--RNNVSFVTLAQGYACQDPIGLYSRLHREGHELNPHV 148

Query: 69  --QAVTLFETTPEKNIVSW------------NGMVSGFVKN-----GMVAEARRVFDAMP 109
               + LF +  +  I  W            N  V   + N     G V  AR VF+ + 
Sbjct: 149 FTSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGIL 208

Query: 110 VRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDA------ 163
            +++V W  +V  YV+ G  E++ +L   M     +         LK S    A      
Sbjct: 209 CKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKG 268

Query: 164 --RKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRR 221
              ++     V D      ++  Y + G + +A  +F+EMPK +VV W+ M++ + +N  
Sbjct: 269 VHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGF 328

Query: 222 VDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAMPVK-----PVVACN 272
            + A  LF  M E     NE + +++L G    G+     E    + VK      +   N
Sbjct: 329 CNEAVDLFIRMREAFVVPNEFTLSSILNGCA-IGKCSGLGEQLHGLVVKVGFDLDIYVSN 387

Query: 273 EMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAAL 332
            +I  +     +D A  +F ++  +++ +W+ +I  YE  G   +A  +F    R   ++
Sbjct: 388 ALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSV 447

Query: 333 NFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIF 392
                             D G QVH   +++   + + V+++LI MY KCGD+  A+ +F
Sbjct: 448 TEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVF 507

Query: 393 NRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVK 452
           N     DV  WN++I+GYS HGLG +AL +   M      P+ ++F+GVLS CS +G + 
Sbjct: 508 NEMETIDVASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLID 567

Query: 453 EGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGA 512
           +G+E FESM   + +EP +EHY CMV LLGR+GQ++ A++++E +P EP  ++W ++L A
Sbjct: 568 QGQECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAMLSA 627

Query: 513 CRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLP 572
                  + A  + E++ ++ PK+   YVL+S+MYA   +W +V  +R+ +K   V K P
Sbjct: 628 SMNQNNEEFARRSAEEILKINPKDEATYVLVSNMYAGAKQWANVASIRKSMKEMGVKKEP 687

Query: 573 GYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDVEEEEK 632
           G SWIE +   H F  G ++ HP+  +I  MLE L+     AGY PD + VL D+++EEK
Sbjct: 688 GLSWIEHQGDVHYFSVGLSD-HPDMKLINGMLEWLNMKATRAGYVPDRNAVLLDMDDEEK 746

Query: 633 THSLGYHSEKLAIAYGLLKVPEGMP-IRVMKNLRVCGDCHSAIKLIAKVTGREIIVRDAN 691
              L  HSE+LA+AYGL+++P     I +MKNLR+C DCHSA+K+I+ +  R++++RD N
Sbjct: 747 DKRLWVHSERLALAYGLVRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMN 806

Query: 692 RFHHFKDGYCSCKDYW 707
           RFHHF  G CSC D+W
Sbjct: 807 RFHHFHAGVCSCGDHW 822



 Score =  119 bits (299), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 115/506 (22%), Positives = 211/506 (41%), Gaps = 65/506 (12%)

Query: 174 DVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMP 233
           D+ A   ++  Y + G  ++A  LFDEMP+RN V++ T+  GYA    + +  +L     
Sbjct: 83  DLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSFVTLAQGYACQDPIGLYSRLHREGH 142

Query: 234 ERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACN-----EMIMGFGFDGDVDRAK 288
           E N   +T+ L  +    +  E   +  +  VK     N      +I  +   G VD A+
Sbjct: 143 ELNPHVFTSFLKLFVSLDK-AEICPWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSAR 201

Query: 289 AVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXX 348
            VFE +  +D   W+ ++  Y   G+  ++L L + M+  G   N               
Sbjct: 202 TVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLG 261

Query: 349 XXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMIT 408
             D  + VH +++++ +  D  V   L+ +Y + GD+  A  +FN  P  DVV W+ MI 
Sbjct: 262 AFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIA 321

Query: 409 GYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVE 468
            + Q+G   EA+++F  M  + V P++ +   +L+ C+  GK     E    +  K   +
Sbjct: 322 RFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAI-GKCSGLGEQLHGLVVKVGFD 380

Query: 469 PGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDA------------------------- 503
             I     ++D+  +  +++ AV++  ++  + +                          
Sbjct: 381 LDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREA 440

Query: 504 ---------IVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVL---LSHMYASKG 551
                    + + S LGAC +   +DL  V V  LA ++  NA    +   L  MYA  G
Sbjct: 441 LRNQVSVTEVTFSSALGACASLASMDLG-VQVHGLA-IKTNNAKKVAVSNSLIDMYAKCG 498

Query: 552 RWEDVEVVREKIKTRSVIK----LPGYSWIEVEKKAH--MFVGGDNNCHPEQPIIMKML- 604
             +  + V  +++T  V      + GYS   + ++A   + +  D +C P     + +L 
Sbjct: 499 DIKFAQSVFNEMETIDVASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLS 558

Query: 605 ------------ERLDGLLRDAGYSP 618
                       E  + ++RD G  P
Sbjct: 559 GCSNAGLIDQGQECFESMIRDHGIEP 584



 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/344 (21%), Positives = 145/344 (42%), Gaps = 63/344 (18%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKN 81
            G +  Y ++G + +A KVF+E P        W+ M+A + Q    ++AV LF    E  
Sbjct: 286 VGLLQLYTQLGDMSDAFKVFNEMP--KNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAF 343

Query: 82  IVS--------WNGMVSG----------------------FVKNGMV---------AEAR 102
           +V          NG   G                      +V N ++           A 
Sbjct: 344 VVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAV 403

Query: 103 RVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV----VSWTVMLGGLLKDS 158
           ++F  +  +N VSW +++ GY   G   +A  +F       V    V+++  LG     +
Sbjct: 404 KLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLA 463

Query: 159 RVEDARKLFDMM----PVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVS 214
            ++   ++  +       K V    ++I  Y + G ++ A+++F+EM   +V +W  ++S
Sbjct: 464 SMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWNALIS 523

Query: 215 GYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAM------- 263
           GY+ +     A ++ ++M +R    N +++  +L G +++G + +  E F++M       
Sbjct: 524 GYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIRDHGIE 583

Query: 264 PVKPVVACNEMIMGFGFDGDVDRAKAVFEKM-RERDDGTWSAMI 306
           P      C  M+   G  G +D+A  + E +  E     W AM+
Sbjct: 584 PCLEHYTC--MVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAML 625



 Score = 62.8 bits (151), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 96/199 (48%), Gaps = 20/199 (10%)

Query: 20  TSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPE 79
            S   I  YA+ G I+ A+ VF+E   I    +SWNA+++ Y       QA+ + +   +
Sbjct: 486 VSNSLIDMYAKCGDIKFAQSVFNEMETI--DVASWNALISGYSTHGLGRQALRILDIMKD 543

Query: 80  K----NIVSWNGMVSGFVKNGMVAEARRVFDAMPVRN------VVSWTSMVRGYVQEGNV 129
           +    N +++ G++SG    G++ + +  F++M +R+      +  +T MVR   + G +
Sbjct: 544 RDCKPNGLTFLGVLSGCSNAGLIDQGQECFESM-IRDHGIEPCLEHYTCMVRLLGRSGQL 602

Query: 130 EEAERLFWRMP-EKNVVSWTVMLGGLLKDSRVEDARK----LFDMMPVKDV--VAVTNMI 182
           ++A +L   +P E +V+ W  ML   +  +  E AR+    +  + P  +   V V+NM 
Sbjct: 603 DKAMKLIEGIPYEPSVMIWRAMLSASMNQNNEEFARRSAEEILKINPKDEATYVLVSNMY 662

Query: 183 GGYCEEGRLEEARALFDEM 201
            G  +   +   R    EM
Sbjct: 663 AGAKQWANVASIRKSMKEM 681


>AT3G14330.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:4779688-4782451 REVERSE
           LENGTH=710
          Length = 710

 Score =  382 bits (980), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/540 (36%), Positives = 312/540 (57%), Gaps = 42/540 (7%)

Query: 210 TTMVSGYARNRRVDVARKLFEVMPERN---EVSWTAMLMGYTHSGRMREA---------- 256
           + +++ ++  RR+D+ARK+F+ + + +   E  W AM +GY+ +G  R+A          
Sbjct: 171 SKLITLFSVCRRLDLARKIFDDVTDSSLLTEKVWAAMAIGYSRNGSPRDALIVYVDMLCS 230

Query: 257 ----SEFFDAMPVKPVVACNEMIMGFGFDGDV-------------------------DRA 287
                 F  ++ +K  V   ++ +G G    +                         D A
Sbjct: 231 FIEPGNFSISVALKACVDLKDLRVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDA 290

Query: 288 KAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXX 347
           + VF+ M ER+  TW+++I V  +K    E   LF +MQ E    ++             
Sbjct: 291 RKVFDGMSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQEEMIGFSWATLTTILPACSRV 350

Query: 348 XXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMI 407
                G+++HA++++S+   D+ + ++L+ MY KCG++  ++ +F+    KD+  WN M+
Sbjct: 351 AALLTGKEIHAQILKSKEKPDVPLLNSLMDMYGKCGEVEYSRRVFDVMLTKDLASWNIML 410

Query: 408 TGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQV 467
             Y+ +G  EE +N+F  M  SGV PD I+F+ +LS CS +G  + G  +FE MK +++V
Sbjct: 411 NCYAINGNIEEVINLFEWMIESGVAPDGITFVALLSGCSDTGLTEYGLSLFERMKTEFRV 470

Query: 468 EPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVE 527
            P +EHYAC+VD+LGRAG++ +AV+++E MP +P A +WGSLL +CR H  + + E+A +
Sbjct: 471 SPALEHYACLVDILGRAGKIKEAVKVIETMPFKPSASIWGSLLNSCRLHGNVSVGEIAAK 530

Query: 528 KLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFV 587
           +L  LEP N G YV++S++YA    W++V+ +RE +K R V K  G SW++V+ K  +FV
Sbjct: 531 ELFVLEPHNPGNYVMVSNIYADAKMWDNVDKIREMMKQRGVKKEAGCSWVQVKDKIQIFV 590

Query: 588 GGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDVEEEEKTHSLGYHSEKLAIAY 647
            G            K+   L   +  +GYSP+ S VLHDV+EE K + +  HSE+LA  Y
Sbjct: 591 AGGGYEFRNSDEYKKVWTELQEAIEKSGYSPNTSVVLHDVDEETKANWVCGHSERLATTY 650

Query: 648 GLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIVRDANRFHHFKDGYCSCKDYW 707
            L+   EG+PIR+ KNLRVC DCHS +K++++VT R I++RD  RFHHF DG CSCKDYW
Sbjct: 651 SLIHTGEGVPIRITKNLRVCADCHSWMKIVSQVTRRVIVLRDTKRFHHFVDGICSCKDYW 710



 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 147/342 (42%), Gaps = 62/342 (18%)

Query: 25  ISRYARIGQIENARKVFDE-TPHIHRTTSSWNAMVAAYFQAHQPHQAVTLF--------- 74
           I+ ++   +++ ARK+FD+ T     T   W AM   Y +   P  A+ ++         
Sbjct: 174 ITLFSVCRRLDLARKIFDDVTDSSLLTEKVWAAMAIGYSRNGSPRDALIVYVDMLCSFIE 233

Query: 75  ------------------------------ETTPEKNIVSWNGMVSGFVKNGMVAEARRV 104
                                         +   + + V +N ++  ++++G+  +AR+V
Sbjct: 234 PGNFSISVALKACVDLKDLRVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDARKV 293

Query: 105 FDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV-VSWTVMLGGLLKDSRV--- 160
           FD M  RNVV+W S++    ++  V E   LF +M E+ +  SW  +   L   SRV   
Sbjct: 294 FDGMSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQEEMIGFSWATLTTILPACSRVAAL 353

Query: 161 ----EDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGY 216
               E   ++       DV  + +++  Y + G +E +R +FD M  +++ +W  M++ Y
Sbjct: 354 LTGKEIHAQILKSKEKPDVPLLNSLMDMYGKCGEVEYSRRVFDVMLTKDLASWNIMLNCY 413

Query: 217 ARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAMP----VKPV 268
           A N  ++    LFE M E     + +++ A+L G + +G        F+ M     V P 
Sbjct: 414 AINGNIEEVINLFEWMIESGVAPDGITFVALLSGCSDTGLTEYGLSLFERMKTEFRVSPA 473

Query: 269 V---ACNEMIMGFGFDGDVDRAKAVFEKMRERDDGT-WSAMI 306
           +   AC   I+G    G +  A  V E M  +   + W +++
Sbjct: 474 LEHYACLVDILGRA--GKIKEAVKVIETMPFKPSASIWGSLL 513



 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 144/338 (42%), Gaps = 27/338 (7%)

Query: 101 ARRVFDAMPVRNVVS---WTSMVRGYVQEGNVEEAERLFWRM----PEKNVVSWTVMLGG 153
           AR++FD +   ++++   W +M  GY + G+  +A  ++  M     E    S +V L  
Sbjct: 186 ARKIFDDVTDSSLLTEKVWAAMAIGYSRNGSPRDALIVYVDMLCSFIEPGNFSISVALKA 245

Query: 154 L--LKDSRVEDA--RKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTW 209
              LKD RV      ++       D V    ++  Y E G  ++AR +FD M +RNVVTW
Sbjct: 246 CVDLKDLRVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDARKVFDGMSERNVVTW 305

Query: 210 TTMVSGYARNRRVDVARKLFEVMPERN-EVSW---TAMLMGYTHSGRMREASEFFDAM-- 263
            +++S  ++  RV     LF  M E     SW   T +L   +    +    E    +  
Sbjct: 306 NSLISVLSKKVRVHEMFNLFRKMQEEMIGFSWATLTTILPACSRVAALLTGKEIHAQILK 365

Query: 264 ----PVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEAL 319
               P  P++  N ++  +G  G+V+ ++ VF+ M  +D  +W+ M+  Y   G   E +
Sbjct: 366 SKEKPDVPLL--NSLMDMYGKCGEVEYSRRVFDVMLTKDLASWNIMLNCYAINGNIEEVI 423

Query: 320 GLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEF--DQDLYVASALIT 377
            LF  M   G A +                 ++G  +  R+ ++EF     L   + L+ 
Sbjct: 424 NLFEWMIESGVAPDGITFVALLSGCSDTGLTEYGLSLFERM-KTEFRVSPALEHYACLVD 482

Query: 378 MYVKCGDLVRAKWIFNRYPLK-DVVMWNSMITGYSQHG 414
           +  + G +  A  +    P K    +W S++     HG
Sbjct: 483 ILGRAGKIKEAVKVIETMPFKPSASIWGSLLNSCRLHG 520



 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 107/262 (40%), Gaps = 24/262 (9%)

Query: 28  YARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNI-VSWN 86
           Y   G  ++ARKVFD      R   +WN++++   +  + H+   LF    E+ I  SW 
Sbjct: 281 YMESGLFDDARKVFDGMS--ERNVVTWNSLISVLSKKVRVHEMFNLFRKMQEEMIGFSWA 338

Query: 87  GMVSGFVKNGMVAEA-------RRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM 139
            + +       VA          ++  +    +V    S++  Y + G VE + R+F  M
Sbjct: 339 TLTTILPACSRVAALLTGKEIHAQILKSKEKPDVPLLNSLMDMYGKCGEVEYSRRVFDVM 398

Query: 140 PEKNVVSWTVMLGGLLKDSRVEDARKLFDMM----PVKDVVAVTNMIGGYCEEGRLEEAR 195
             K++ SW +ML     +  +E+   LF+ M       D +    ++ G  + G  E   
Sbjct: 399 LTKDLASWNIMLNCYAINGNIEEVINLFEWMIESGVAPDGITFVALLSGCSDTGLTEYGL 458

Query: 196 ALFDEMPKRNVVT-----WTTMVSGYARNRRVDVARKLFEVMPERNEVS-WTAMLMGYTH 249
           +LF+ M     V+     +  +V    R  ++  A K+ E MP +   S W ++L     
Sbjct: 459 SLFERMKTEFRVSPALEHYACLVDILGRAGKIKEAVKVIETMPFKPSASIWGSLLNSCRL 518

Query: 250 SGRMR----EASEFFDAMPVKP 267
            G +      A E F   P  P
Sbjct: 519 HGNVSVGEIAAKELFVLEPHNP 540


>AT3G49170.1 | Symbols: EMB2261 | Tetratricopeptide repeat
           (TPR)-like superfamily protein | chr3:18226954-18229600
           REVERSE LENGTH=850
          Length = 850

 Score =  381 bits (979), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 243/750 (32%), Positives = 372/750 (49%), Gaps = 70/750 (9%)

Query: 25  ISRYARIGQIENARKVFDETPHI-HRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIV 83
           IS Y++ G    A  VF+       R   SW+AM+A Y    +   A+ +F    E  +V
Sbjct: 104 ISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLV 163

Query: 84  ----SWNGMV-----SGFVKNGMVA--------------------------------EAR 102
                +  ++     S FV  G V                                  A 
Sbjct: 164 PNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAY 223

Query: 103 RVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMP----EKNVVSWTVMLGGLLKDS 158
           +VFD M   NVV+WT M+   +Q G   EA R F  M     E +  + + +     +  
Sbjct: 224 KVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELE 283

Query: 159 RVEDARKLFDMMP----VKDV-VAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMV 213
            +   ++L         V DV  ++ +M      +G +++ R +FD M   +V++WT ++
Sbjct: 284 NLSLGKQLHSWAIRSGLVDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALI 343

Query: 214 SGYARNRRVDV-ARKLFEVM-----PERNEVSWTAML-----MGYTHSGRMREASEFFDA 262
           +GY +N  +   A  LF  M      E N  ++++       +     G+      F   
Sbjct: 344 TGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRG 403

Query: 263 MPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERK-GFELEALGL 321
           +     VA N +I  F     ++ A+  FE + E++  +++  +    R   FE +A  L
Sbjct: 404 LASNSSVA-NSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFE-QAFKL 461

Query: 322 FARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVK 381
            + +      ++                   G Q+H+++V+     +  V +ALI+MY K
Sbjct: 462 LSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSK 521

Query: 382 CGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGV 441
           CG +  A  +FN    ++V+ W SMITG+++HG     L  F  M   GV P++++++ +
Sbjct: 522 CGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAI 581

Query: 442 LSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEP 501
           LSACS+ G V EG   F SM   ++++P +EHYACMVDLL RAG + DA E +  MP + 
Sbjct: 582 LSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQA 641

Query: 502 DAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVRE 561
           D +VW + LGACR H   +L ++A  K+ +L+P     Y+ LS++YA  G+WE+   +R 
Sbjct: 642 DVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRR 701

Query: 562 KIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHS 621
           K+K R+++K  G SWIEV  K H F  GD   HP    I   L+RL   ++  GY PD  
Sbjct: 702 KMKERNLVKEGGCSWIEVGDKIHKFYVGD-TAHPNAHQIYDELDRLITEIKRCGYVPDTD 760

Query: 622 FVLHDVEEEEKTHS----LGYHSEKLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLI 677
            VLH +EEE         L  HSEK+A+A+GL+   +  P+RV KNLRVCGDCH+A+K I
Sbjct: 761 LVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYI 820

Query: 678 AKVTGREIIVRDANRFHHFKDGYCSCKDYW 707
           + V+GREI++RD NRFHHFKDG CSC DYW
Sbjct: 821 STVSGREIVLRDLNRFHHFKDGKCSCNDYW 850



 Score = 99.4 bits (246), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 165/373 (44%), Gaps = 35/373 (9%)

Query: 167 FDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEM---PKRNVVTWTTMVSGYARNRRVD 223
           FD+ P  D V   ++I  Y + G   +A  +F+ M    KR+VV+W+ M++ Y  N R  
Sbjct: 91  FDIEP--DSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGREL 148

Query: 224 VARKLF----EVMPERNEVSWTAMLMGYTHS----------GRMREASEFFDAMPVKPVV 269
            A K+F    E+    N+  +TA++   ++S          G + +   F         V
Sbjct: 149 DAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHF----ESDVCV 204

Query: 270 ACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREG 329
            C+ + M    +   + A  VF+KM E +  TW+ MI    + GF  EA+  F  M   G
Sbjct: 205 GCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSG 264

Query: 330 AALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKC---GDLV 386
              +                   G+Q+H+  +RS    D  V  +L+ MY KC   G + 
Sbjct: 265 FESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVD 322

Query: 387 RAKWIFNRYPLKDVVMWNSMITGYSQH-GLGEEALNVFRDMCLSG-VPPDDISFIGVLSA 444
             + +F+R     V+ W ++ITGY ++  L  EA+N+F +M   G V P+  +F     A
Sbjct: 323 DCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKA 382

Query: 445 CSYSGKVKEGREIF-ESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDA 503
           C      + G+++  ++ K        + +   ++ +  ++ ++ DA    E +  E + 
Sbjct: 383 CGNLSDPRVGKQVLGQAFKRGLASNSSVAN--SVISMFVKSDRMEDAQRAFESLS-EKNL 439

Query: 504 IVWGSLL-GACRT 515
           + + + L G CR 
Sbjct: 440 VSYNTFLDGTCRN 452



 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 111/491 (22%), Positives = 197/491 (40%), Gaps = 72/491 (14%)

Query: 73  LFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAM---PVRNVVSWTSMVRGYVQEGNV 129
           L E   E + V +N ++S + K+G  A+A  VF+ M     R+VVSW++M+  Y   G  
Sbjct: 88  LIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRE 147

Query: 130 EEAERLFWRMPEKNVV----SWT----------------VMLGGLLKDSRVEDARKLFDM 169
            +A ++F    E  +V     +T                V LG L+K    E        
Sbjct: 148 LDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFE-------- 199

Query: 170 MPVKDVVAVTNMIGGYCE-EGRLEEARALFDEMPKRNVVTWTTMV--------------- 213
               DV    ++I  + + E   E A  +FD+M + NVVTWT M+               
Sbjct: 200 ---SDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRF 256

Query: 214 ------SGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKP 267
                 SG+  ++       +F    E   +S    L    HS  +R  S   D +    
Sbjct: 257 FLDMVLSGFESDKF--TLSSVFSACAELENLSLGKQL----HSWAIR--SGLVDDVECSL 308

Query: 268 VVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERK-GFELEALGLFARMQ 326
           V    +M      DG VD  + VF++M +    +W+A+I  Y +      EA+ LF+ M 
Sbjct: 309 V----DMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMI 364

Query: 327 REG-AALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDL 385
            +G    N                   G+QV  +  +     +  VA+++I+M+VK   +
Sbjct: 365 TQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRM 424

Query: 386 VRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSAC 445
             A+  F     K++V +N+ + G  ++   E+A  +  ++    +     +F  +LS  
Sbjct: 425 EDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGV 484

Query: 446 SYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIV 505
           +  G +++G +I  S   K  +         ++ +  + G ++ A  +   M    + I 
Sbjct: 485 ANVGSIRKGEQI-HSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFME-NRNVIS 542

Query: 506 WGSLLGACRTH 516
           W S++     H
Sbjct: 543 WTSMITGFAKH 553



 Score = 85.1 bits (209), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/271 (23%), Positives = 119/271 (43%), Gaps = 23/271 (8%)

Query: 18  QCTSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQ-AHQPHQAVTLFET 76
           +C+     ++ +  G +++ RKVFD       +  SW A++  Y +  +   +A+ LF  
Sbjct: 305 ECSLVDMYAKCSADGSVDDCRKVFDRME--DHSVMSWTALITGYMKNCNLATEAINLFSE 362

Query: 77  TPEKNIVSWNGMV--SGFVKNGMVAEAR-------RVFDAMPVRNVVSWTSMVRGYVQEG 127
              +  V  N     S F   G +++ R       + F      N     S++  +V+  
Sbjct: 363 MITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSD 422

Query: 128 NVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDV----VAVTNMIG 183
            +E+A+R F  + EKN+VS+   L G  ++   E A KL   +  +++        +++ 
Sbjct: 423 RMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLS 482

Query: 184 GYCEEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVS 239
           G    G + +   +  ++ K     N      ++S Y++   +D A ++F  M  RN +S
Sbjct: 483 GVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVIS 542

Query: 240 WTAMLMGYTHSGRMREASEFFDAM---PVKP 267
           WT+M+ G+   G      E F+ M    VKP
Sbjct: 543 WTSMITGFAKHGFAIRVLETFNQMIEEGVKP 573



 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 5/165 (3%)

Query: 353 GRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFN---RYPLKDVVMWNSMITG 409
           G+ VHARL+  + + D  + ++LI++Y K GD  +A+ +F    R+  +DVV W++M+  
Sbjct: 81  GKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMAC 140

Query: 410 YSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEP 469
           Y  +G   +A+ VF +    G+ P+D  +  V+ ACS S  V  GR     +      E 
Sbjct: 141 YGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFES 200

Query: 470 GIEHYACMVDLLGRA-GQVNDAVEIVEKMPMEPDAIVWGSLLGAC 513
            +     ++D+  +      +A ++ +KM  E + + W  ++  C
Sbjct: 201 DVCVGCSLIDMFVKGENSFENAYKVFDKMS-ELNVVTWTLMITRC 244



 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/236 (21%), Positives = 96/236 (40%), Gaps = 19/236 (8%)

Query: 20  TSTGAISRYARIGQIENARKVFDETPHIHRTTSS--WNAMVAAYFQAHQPHQAVTLFETT 77
           T    +S  A +G I    ++  +   +  + +    NA+++ Y +      A  +F   
Sbjct: 476 TFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFM 535

Query: 78  PEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNV----VSWTSMVRGYVQEGNVEEAE 133
             +N++SW  M++GF K+G        F+ M    V    V++ +++      G V E  
Sbjct: 536 ENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGW 595

Query: 134 RLFWRMPEKNVVS-----WTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYC-- 186
           R F  M E + +      +  M+  L +   + DA +  + MP +  V V     G C  
Sbjct: 596 RHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRV 655

Query: 187 ----EEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEV 238
               E G+L   + L  E+       +  + + YA   + + + ++   M ERN V
Sbjct: 656 HSNTELGKLAARKIL--ELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLV 709


>AT1G16480.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:5625742-5628605 REVERSE
           LENGTH=928
          Length = 928

 Score =  380 bits (975), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 221/731 (30%), Positives = 365/731 (49%), Gaps = 59/731 (8%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFE--------- 75
           IS    +G ++ A  +FD+     R T SWN++ AAY Q     ++  +F          
Sbjct: 185 ISMLGSMGNVDYANYIFDQMSE--RDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEV 242

Query: 76  -TTPEKNIVS---------WNGMVSGFVKN--------------------GMVAEARRVF 105
            +T    ++S         W   + G V                      G   EA  VF
Sbjct: 243 NSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVF 302

Query: 106 DAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEK----NVVSWTVMLGGLLKDSRVE 161
             MP ++++SW S++  +V +G   +A  L   M       N V++T  L         E
Sbjct: 303 KQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFE 362

Query: 162 DARKLFDMMPVKDV----VAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYA 217
             R L  ++ V  +    +    ++  Y + G + E+R +  +MP+R+VV W  ++ GYA
Sbjct: 363 KGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYA 422

Query: 218 RNRRVDVARKLFEVM----PERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNE 273
            +   D A   F+ M       N ++  ++L      G + E  +   A  V      +E
Sbjct: 423 EDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDE 482

Query: 274 -----MIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQRE 328
                +I  +   GD+  ++ +F  +  R+  TW+AM+      G   E L L ++M+  
Sbjct: 483 HVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSF 542

Query: 329 GAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRA 388
           G +L+                 + G+Q+H   V+  F+ D ++ +A   MY KCG++   
Sbjct: 543 GVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEV 602

Query: 389 KWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYS 448
             +      + +  WN +I+   +HG  EE    F +M   G+ P  ++F+ +L+ACS+ 
Sbjct: 603 VKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHG 662

Query: 449 GKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGS 508
           G V +G   ++ +   + +EP IEH  C++DLLGR+G++ +A   + KMPM+P+ +VW S
Sbjct: 663 GLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRS 722

Query: 509 LLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSV 568
           LL +C+ H  LD    A E L++LEP++   YVL S+M+A+ GRWEDVE VR+++  +++
Sbjct: 723 LLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNI 782

Query: 569 IKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDVE 628
            K    SW++++ K   F  GD   HP+   I   LE +  L++++GY  D S  L D +
Sbjct: 783 KKKQACSWVKLKDKVSSFGIGDRT-HPQTMEIYAKLEDIKKLIKESGYVADTSQALQDTD 841

Query: 629 EEEKTHSLGYHSEKLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIVR 688
           EE+K H+L  HSE+LA+AY L+  PEG  +R+ KNLR+C DCHS  K +++V GR I++R
Sbjct: 842 EEQKEHNLWNHSERLALAYALMSTPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLR 901

Query: 689 DANRFHHFKDG 699
           D  RFHHF+ G
Sbjct: 902 DQYRFHHFERG 912



 Score =  167 bits (422), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 135/559 (24%), Positives = 241/559 (43%), Gaps = 74/559 (13%)

Query: 21  STGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFE----- 75
           ST  +  Y   G +  +RKVF+E P   R   SW +++  Y    +P + + +++     
Sbjct: 80  STAILHLYGVYGLVSCSRKVFEEMPD--RNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGE 137

Query: 76  ----------------------------------TTPEKNIVSWNGMVSGFVKNGMVAEA 101
                                             +  E  +   N ++S     G V  A
Sbjct: 138 GVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYA 197

Query: 102 RRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM----PEKNVVSWTVMLGGLLKD 157
             +FD M  R+ +SW S+   Y Q G++EE+ R+F  M     E N  + + +L  L   
Sbjct: 198 NYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHV 257

Query: 158 SRVEDARKLFDM---MPVKDVVAVTN-MIGGYCEEGRLEEARALFDEMPKRNVVTWTTMV 213
              +  R +  +   M    VV V N ++  Y   GR  EA  +F +MP +++++W +++
Sbjct: 258 DHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLM 317

Query: 214 SGYARNRRVDVARKLFEVMPER----NEVSWTAMLMG-----YTHSGRMREASEFFDAMP 264
           + +  + R   A  L   M       N V++T+ L       +   GR+         + 
Sbjct: 318 ASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLF 377

Query: 265 VKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFAR 324
              ++  N ++  +G  G++  ++ V  +M  RD   W+A+I  Y       +AL  F  
Sbjct: 378 YNQIIG-NALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQT 436

Query: 325 MQREGAALNF-PXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCG 383
           M+ EG + N+                 + G+ +HA +V + F+ D +V ++LITMY KCG
Sbjct: 437 MRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCG 496

Query: 384 DLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLS 443
           DL  ++ +FN    ++++ WN+M+   + HG GEE L +   M   GV  D  SF   LS
Sbjct: 497 DLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLS 556

Query: 444 ACSYSGKVKEGREIFESMKCKYQVEPGIEH----YACMVDLLGRAGQVNDAVEIVEKMPM 499
           A +    ++EG+++         V+ G EH    +    D+  + G++    E+V+ +P 
Sbjct: 557 AAAKLAVLEEGQQLH-----GLAVKLGFEHDSFIFNAAADMYSKCGEIG---EVVKMLPP 608

Query: 500 EPDAIV--WGSLLGACRTH 516
             +  +  W  L+ A   H
Sbjct: 609 SVNRSLPSWNILISALGRH 627



 Score =  141 bits (355), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 103/422 (24%), Positives = 195/422 (46%), Gaps = 19/422 (4%)

Query: 108 MPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLL-----KDSRVED 162
           MPVRN VSW +M+ G V+ G   E    F +M +  +   + ++  L+       S   +
Sbjct: 1   MPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFRE 60

Query: 163 ARKLFDMMP----VKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYAR 218
             ++   +     + DV   T ++  Y   G +  +R +F+EMP RNVV+WT+++ GY+ 
Sbjct: 61  GVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSD 120

Query: 219 NRRVDVARKLFEVM-PERNEVSWTAMLMGYTHSGRMREAS-------EFFDAMPVKPVVA 270
               +    +++ M  E    +  +M +  +  G +++ S       +   +     +  
Sbjct: 121 KGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAV 180

Query: 271 CNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGA 330
            N +I   G  G+VD A  +F++M ERD  +W+++   Y + G   E+  +F+ M+R   
Sbjct: 181 ENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHD 240

Query: 331 ALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKW 390
            +N                   GR +H  +V+  FD  + V + L+ MY   G  V A  
Sbjct: 241 EVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANL 300

Query: 391 IFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGK 450
           +F + P KD++ WNS++  +   G   +AL +   M  SG   + ++F   L+AC     
Sbjct: 301 VFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDF 360

Query: 451 VKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLL 510
            ++GR +   +         I   A +V + G+ G+++++  ++ +MP   D + W +L+
Sbjct: 361 FEKGRILHGLVVVSGLFYNQIIGNA-LVSMYGKIGEMSESRRVLLQMP-RRDVVAWNALI 418

Query: 511 GA 512
           G 
Sbjct: 419 GG 420



 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/348 (18%), Positives = 139/348 (39%), Gaps = 62/348 (17%)

Query: 18  QCTSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETT 77
           Q      +S Y +IG++  +R+V  + P   R   +WNA++  Y +   P +A+  F+T 
Sbjct: 380 QIIGNALVSMYGKIGEMSESRRVLLQMP--RRDVVAWNALIGGYAEDEDPDKALAAFQTM 437

Query: 78  PEKNIVS----------------------------------------WNGMVSGFVKNGM 97
             + + S                                         N +++ + K G 
Sbjct: 438 RVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGD 497

Query: 98  VAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV----VSWTVMLGG 153
           ++ ++ +F+ +  RN+++W +M+      G+ EE  +L  +M    V     S++  L  
Sbjct: 498 LSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSA 557

Query: 154 LLKDSRVEDARKLFDMMPVK-----DVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVT 208
             K + +E+ ++L   + VK     D          Y + G + E   +      R++ +
Sbjct: 558 AAKLAVLEEGQQLHG-LAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPS 616

Query: 209 WTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAMP 264
           W  ++S   R+   +     F  M E       V++ ++L   +H G + +   ++D + 
Sbjct: 617 WNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIA 676

Query: 265 ----VKPVVA-CNEMIMGFGFDGDVDRAKAVFEKMRER-DDGTWSAMI 306
               ++P +  C  +I   G  G +  A+    KM  + +D  W +++
Sbjct: 677 RDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLL 724


>AT1G53600.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:20001263-20003416 FORWARD
           LENGTH=717
          Length = 717

 Score =  379 bits (974), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 217/609 (35%), Positives = 337/609 (55%), Gaps = 45/609 (7%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAH-QPHQAVTLFETTPEKNIV 83
           IS YA  G++  A +VFDE P   R T+S+NAM+ A  +      +A  LF   PEKN V
Sbjct: 88  ISAYAENGKMSKAWQVFDEMPV--RVTTSYNAMITAMIKNKCDLGKAYELFCDIPEKNAV 145

Query: 84  SWNGMVSGFVKNGMVAEARRVFDAMPV--RNVVSWTSMVRGYVQEGNVEEAERLFWRMPE 141
           S+  M++GFV+ G   EA  ++   PV  R+ V+   ++ GY++ G   EA R+F  M  
Sbjct: 146 SYATMITGFVRAGRFDEAEFLYAETPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAV 205

Query: 142 KNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEM 201
           K VVS + M+ G  K  R+ DAR LFD M  ++V+  T MI GY + G  E+   LF  M
Sbjct: 206 KEVVSCSSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRM 265

Query: 202 PK------------------RNVVTW----------------------TTMVSGYARNRR 221
            +                  R+ V +                       +++S Y++   
Sbjct: 266 RQEGDVKVNSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGY 325

Query: 222 VDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFD 281
           +  A+ +F VM  ++ VSW +++ G     ++ EA E F+ MP K +V+  +MI GF   
Sbjct: 326 MGEAKAVFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGK 385

Query: 282 GDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXX 341
           G++ +   +F  M E+D+ TW+AMI  +   G+  EAL  F +M ++    N        
Sbjct: 386 GEISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVL 445

Query: 342 XXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVV 401
                      G Q+H R+V+     DL V ++L++MY KCG+   A  IF+     ++V
Sbjct: 446 SATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIV 505

Query: 402 MWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESM 461
            +N+MI+GYS +G G++AL +F  +  SG  P+ ++F+ +LSAC + G V  G + F+SM
Sbjct: 506 SYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHVGYVDLGWKYFKSM 565

Query: 462 KCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDL 521
           K  Y +EPG +HYACMVDLLGR+G ++DA  ++  MP +P + VWGSLL A +TH+++DL
Sbjct: 566 KSSYNIEPGPDHYACMVDLLGRSGLLDDASNLISTMPCKPHSGVWGSLLSASKTHLRVDL 625

Query: 522 AEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEK 581
           AE+A +KL +LEP +A PYV+LS +Y+  G+  D + +    K++ + K PG SWI ++ 
Sbjct: 626 AELAAKKLIELEPDSATPYVVLSQLYSIIGKNRDCDRIMNIKKSKRIKKDPGSSWIILKG 685

Query: 582 KAHMFVGGD 590
           + H F+ GD
Sbjct: 686 EVHNFLAGD 694



 Score =  180 bits (456), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 140/543 (25%), Positives = 243/543 (44%), Gaps = 89/543 (16%)

Query: 14  QVRFQCTSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTL 73
            +  +C ST A+S +  I Q     + F ET          N+ ++ + +     +A  +
Sbjct: 16  NICLRCNSTLAVSNHEPITQ---KTRNFLETTTTSTAIFQCNSQISKHARNGNLQEAEAI 72

Query: 74  FETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQ-EGNVEEA 132
           F     ++IVSW  M+S + +NG +++A +VFD MPVR   S+ +M+   ++ + ++ +A
Sbjct: 73  FRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPVRVTTSYNAMITAMIKNKCDLGKA 132

Query: 133 ERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVK--DVVAVTNMIGGYCEEGR 190
             LF  +PEKN VS+  M+ G ++  R ++A  L+   PVK  D VA   ++ GY   G+
Sbjct: 133 YELFCDIPEKNAVSYATMITGFVRAGRFDEAEFLYAETPVKFRDSVASNVLLSGYLRAGK 192

Query: 191 LEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHS 250
             EA  +F  M  + VV+ ++MV GY +  R+  AR LF+ M ERN ++WTAM+ GY  +
Sbjct: 193 WNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMIDGYFKA 252

Query: 251 G------------------------------------RMREASE---FFDAMPVK-PVVA 270
           G                                    R RE S+       MP++  +  
Sbjct: 253 GFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLEFDLFL 312

Query: 271 CNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIK-VYERKGFELEALGLFARMQREG 329
            N ++  +   G +  AKAVF  M+ +D  +W+++I  + +RK    EA  LF +M    
Sbjct: 313 GNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLITGLVQRKQIS-EAYELFEKMP--- 368

Query: 330 AALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAK 389
                                                +D+   + +I  +   G++ +  
Sbjct: 369 ------------------------------------GKDMVSWTDMIKGFSGKGEISKCV 392

Query: 390 WIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSG 449
            +F   P KD + W +MI+ +  +G  EEAL  F  M    V P+  +F  VLSA +   
Sbjct: 393 ELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLA 452

Query: 450 KVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSL 509
            + EG +I   +  K  +   +     +V +  + G  NDA +I   +  EP+ + + ++
Sbjct: 453 DLIEGLQIHGRV-VKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCIS-EPNIVSYNTM 510

Query: 510 LGA 512
           +  
Sbjct: 511 ISG 513


>AT3G23330.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:8347200-8349347 FORWARD
           LENGTH=715
          Length = 715

 Score =  375 bits (962), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 233/701 (33%), Positives = 358/701 (51%), Gaps = 64/701 (9%)

Query: 63  QAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRG 122
           QA Q H     F  T   +  S + ++S +    ++ EA  +F  +    V++W S++R 
Sbjct: 23  QAKQLHAQ---FIRTQSLSHTSASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRC 79

Query: 123 YVQEGNVEEAERLFWRM------PEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDV- 175
           +  +    +A   F  M      P+ NV    +    ++ D R  ++   F +    D  
Sbjct: 80  FTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCD 139

Query: 176 ----VAVTNMIGGYCEEGRLEEARALFDEMPKRNV------VTWTTMVSGYARNRRVDVA 225
                A+ NM       G       +FDEMP+R        V   T +  +     +D  
Sbjct: 140 LYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFG----IDSV 195

Query: 226 RKLFEVMPERNEVSWTAMLMGYTHSGRMREA-------------SEFFDAMPVKPV---- 268
           R++FEVMP ++ VS+  ++ GY  SG   +A              + F    V P+    
Sbjct: 196 RRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEY 255

Query: 269 --VACNEMIMGF----GFDGDV----------------DRAKAVFEKMRERDDGTWSAMI 306
             V   + I G+    G D DV                + ++ VF ++  RD  +W++++
Sbjct: 256 VDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLV 315

Query: 307 KVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFD 366
             Y + G   EAL LF +M                           G+Q+H  ++R  F 
Sbjct: 316 AGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFG 375

Query: 367 QDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDM 426
            ++++ASAL+ MY KCG++  A+ IF+R  + D V W ++I G++ HG G EA+++F +M
Sbjct: 376 SNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEM 435

Query: 427 CLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQ 486
              GV P+ ++F+ VL+ACS+ G V E    F SM   Y +   +EHYA + DLLGRAG+
Sbjct: 436 KRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGK 495

Query: 487 VNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHM 546
           + +A   + KM +EP   VW +LL +C  H  L+LAE   EK+  ++ +N G YVL+ +M
Sbjct: 496 LEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNM 555

Query: 547 YASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLER 606
           YAS GRW+++  +R +++ + + K P  SWIE++ K H FV GD + HP    I + L+ 
Sbjct: 556 YASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRS-HPSMDKINEFLKA 614

Query: 607 LDGLLRDAGYSPDHSFVLHDVEEEEKTHSLGYHSEKLAIAYGLLKVPEGMPIRVMKNLRV 666
           +   +   GY  D S VLHDV+EE K   L  HSE+LA+A+G++    G  IRV KN+R+
Sbjct: 615 VMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRI 674

Query: 667 CGDCHSAIKLIAKVTGREIIVRDANRFHHFKDGYCSCKDYW 707
           C DCH AIK I+K+T REIIVRD +RFHHF  G CSC DYW
Sbjct: 675 CTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715



 Score = 91.7 bits (226), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/367 (24%), Positives = 159/367 (43%), Gaps = 63/367 (17%)

Query: 20  TSTGAISRYARI---GQIENARKVFDETPHIHRTTSSWNAMVAA--YFQAHQPHQAVTLF 74
           T    ++ YA++   G   +   VFDE P   RT++S +  V A              +F
Sbjct: 142 TGNALMNMYAKLLGMGSKISVGNVFDEMPQ--RTSNSGDEDVKAETCIMPFGIDSVRRVF 199

Query: 75  ETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAM----------------PV-------- 110
           E  P K++VS+N +++G+ ++GM  +A R+   M                P+        
Sbjct: 200 EVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVI 259

Query: 111 ---------------RNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLL 155
                           +V   +S+V  Y +   +E++ER+F R+  ++ +SW  ++ G +
Sbjct: 260 KGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYV 319

Query: 156 KDSRVEDARKLFDMMPVKDV----VAVTNMIGGYCEEGRLEEARALFDEMPK----RNVV 207
           ++ R  +A +LF  M    V    VA +++I        L   + L   + +     N+ 
Sbjct: 320 QNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIF 379

Query: 208 TWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMP--- 264
             + +V  Y++   +  ARK+F+ M   +EVSWTA++MG+   G   EA   F+ M    
Sbjct: 380 IASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQG 439

Query: 265 VKP-VVACNEMIMGFGFDGDVDRAKAVFEKMRE-----RDDGTWSAMIKVYERKGFELEA 318
           VKP  VA   ++      G VD A   F  M +     ++   ++A+  +  R G   EA
Sbjct: 440 VKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEA 499

Query: 319 LGLFARM 325
               ++M
Sbjct: 500 YNFISKM 506



 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 139/298 (46%), Gaps = 25/298 (8%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNV- 113
           +++V  Y ++ +   +  +F     ++ +SWN +V+G+V+NG   EA R+F  M    V 
Sbjct: 281 SSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVK 340

Query: 114 ---VSWTSMVRGYVQEGNVEEAERLFWRMPE----KNVVSWTVMLGGLLKDSRVEDARKL 166
              V+++S++        +   ++L   +       N+   + ++    K   ++ ARK+
Sbjct: 341 PGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKI 400

Query: 167 FDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRRV 222
           FD M V D V+ T +I G+   G   EA +LF+EM ++    N V +  +++  +    V
Sbjct: 401 FDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLV 460

Query: 223 DVA-------RKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVAC-NEM 274
           D A        K++ +  E    +  A L+G   +G++ EA  F   M V+P  +  + +
Sbjct: 461 DEAWGYFNSMTKVYGLNQELEHYAAVADLLG--RAGKLEEAYNFISKMCVEPTGSVWSTL 518

Query: 275 IMGFGFDGDVDRAKAVFEKMRERDD---GTWSAMIKVYERKGFELEALGLFARMQREG 329
           +       +++ A+ V EK+   D    G +  M  +Y   G   E   L  RM+++G
Sbjct: 519 LSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKG 576


>AT1G74630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:28030521-28032452 FORWARD
           LENGTH=643
          Length = 643

 Score =  375 bits (962), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 218/608 (35%), Positives = 335/608 (55%), Gaps = 23/608 (3%)

Query: 101 ARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRV 160
           ARR+    P  +   + ++VRGY +      +  +F  M  K         G +  DS  
Sbjct: 58  ARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRK---------GFVFPDS-- 106

Query: 161 EDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNR 220
                 F +  V++  ++      +C+  +      LF           TT++  Y    
Sbjct: 107 --FSFAFVIKAVENFRSLRTGFQMHCQALKHGLESHLF---------VGTTLIGMYGGCG 155

Query: 221 RVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGF 280
            V+ ARK+F+ M + N V+W A++        +  A E FD M V+   + N M+ G+  
Sbjct: 156 CVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIK 215

Query: 281 DGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXX 340
            G+++ AK +F +M  RDD +WS MI      G   E+   F  +QR G + N       
Sbjct: 216 AGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGV 275

Query: 341 XXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKD- 399
                     + G+ +H  + ++ +   + V +ALI MY +CG++  A+ +F     K  
Sbjct: 276 LSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRC 335

Query: 400 VVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFE 459
           +V W SMI G + HG GEEA+ +F +M   GV PD ISFI +L ACS++G ++EG + F 
Sbjct: 336 IVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFS 395

Query: 460 SMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKL 519
            MK  Y +EP IEHY CMVDL GR+G++  A + + +MP+ P AIVW +LLGAC +H  +
Sbjct: 396 EMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNI 455

Query: 520 DLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEV 579
           +LAE   ++L +L+P N+G  VLLS+ YA+ G+W+DV  +R+ +  + + K   +S +EV
Sbjct: 456 ELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVEV 515

Query: 580 EKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDVEEEEKTHSLGYH 639
            K  + F  G+     +     K+ E +  L  +AGY+P+ +  L+DVEEEEK   +  H
Sbjct: 516 GKTMYKFTAGEKKKGIDIEAHEKLKEIILRLKDEAGYTPEVASALYDVEEEEKEDQVSKH 575

Query: 640 SEKLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIVRDANRFHHFKDG 699
           SEKLA+A+ L ++ +G  IR++KNLR+C DCH+ +KL +KV G EI+VRD NRFH FKDG
Sbjct: 576 SEKLALAFALARLSKGANIRIVKNLRICRDCHAVMKLTSKVYGVEILVRDRNRFHSFKDG 635

Query: 700 YCSCKDYW 707
            CSC+DYW
Sbjct: 636 SCSCRDYW 643



 Score =  115 bits (288), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 136/257 (52%), Gaps = 19/257 (7%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHR-TTSSWNAMVAAYFQAHQPHQAVTLFETTPEK 80
           T  I  Y   G +E ARKVFDE   +H+    +WNA++ A F+ +    A  +F+    +
Sbjct: 145 TTLIGMYGGCGCVEFARKVFDE---MHQPNLVAWNAVITACFRGNDVAGAREIFDKMLVR 201

Query: 81  NIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMP 140
           N  SWN M++G++K G +  A+R+F  MP R+ VSW++M+ G    G+  E+  L++R  
Sbjct: 202 NHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNES-FLYFREL 260

Query: 141 EK-----NVVSWTVMLGGLLKDSRVEDARKLFDMMPVKD---VVAVTN-MIGGYCEEGRL 191
           ++     N VS T +L    +    E  + L   +       +V+V N +I  Y   G +
Sbjct: 261 QRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNV 320

Query: 192 EEARALFDEMP-KRNVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMG 246
             AR +F+ M  KR +V+WT+M++G A + + + A +LF  M       + +S+ ++L  
Sbjct: 321 PMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHA 380

Query: 247 YTHSGRMREASEFFDAM 263
            +H+G + E  ++F  M
Sbjct: 381 CSHAGLIEEGEDYFSEM 397



 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 146/361 (40%), Gaps = 89/361 (24%)

Query: 54  WNAMVAAYFQAHQPHQAVTLFETTPEKNIV---------------SWNGMVSGF------ 92
           +N +V  Y ++ +PH +V +F     K  V               ++  + +GF      
Sbjct: 73  FNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQA 132

Query: 93  VKNGM-------------------VAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAE 133
           +K+G+                   V  AR+VFD M   N+V+W +++    +  +V  A 
Sbjct: 133 LKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAR 192

Query: 134 RLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEE 193
            +F +M  +N  SW VML G +K   +E A+++F  MP +D V+ + MI G    G   E
Sbjct: 193 EIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNE 252

Query: 194 ARALFDEMPKR----NVVTWTTMVSG---------------------------------- 215
           +   F E+ +     N V+ T ++S                                   
Sbjct: 253 SFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALID 312

Query: 216 -YARNRRVDVARKLFEVMPE-RNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPV----V 269
            Y+R   V +AR +FE M E R  VSWT+M+ G    G+  EA   F+ M    V    +
Sbjct: 313 MYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGI 372

Query: 270 ACNEMIMGFGFDGDVDRAKAVFEKMR-----ERDDGTWSAMIKVYERKGFELEALGLFAR 324
           +   ++      G ++  +  F +M+     E +   +  M+ +Y R G   +A     +
Sbjct: 373 SFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQ 432

Query: 325 M 325
           M
Sbjct: 433 M 433



 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 76/162 (46%), Gaps = 5/162 (3%)

Query: 355 QVHARLVRSEFDQDLYVASALIT-MYVKCGD-LVRAKWIFNRYPLKDVVMWNSMITGYSQ 412
           Q+H   ++   D D Y    LI    +   D L  A+ +   +P  D  M+N+++ GYS+
Sbjct: 23  QIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPEPDAFMFNTLVRGYSE 82

Query: 413 HGLGEEALNVFRDMCLSG-VPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGI 471
                 ++ VF +M   G V PD  SF  V+ A      ++ G ++      K+ +E  +
Sbjct: 83  SDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQM-HCQALKHGLESHL 141

Query: 472 EHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGAC 513
                ++ + G  G V  A ++ ++M  +P+ + W +++ AC
Sbjct: 142 FVGTTLIGMYGGCGCVEFARKVFDEMH-QPNLVAWNAVITAC 182


>AT5G40405.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:16169315-16171153 FORWARD
           LENGTH=612
          Length = 612

 Score =  375 bits (962), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 209/568 (36%), Positives = 313/568 (55%), Gaps = 20/568 (3%)

Query: 155 LKDSRVED-ARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALF--------DEMPKRN 205
           L D +  D A ++ D      + A+ +MI  +C+    E++   +        D  P   
Sbjct: 50  LSDHKYLDYANQILDRSEKPTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNY 109

Query: 206 VVTWTTMVSGYARNRRVDVA------RKLFEVMPERNEVSWTAMLMGYTHSGRMREASEF 259
            V +        R R   +       R+ F+  P       T ++  Y   G +    + 
Sbjct: 110 TVNFLVQACTGLRMRETGLQVHGMTIRRGFDNDPHVQ----TGLISLYAELGCLDSCHKV 165

Query: 260 FDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEAL 319
           F+++P    V    M+      GDV  A+ +FE M ERD   W+AMI  Y + G   EAL
Sbjct: 166 FNSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREAL 225

Query: 320 GLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMY 379
            +F  MQ EG  +N                 D GR  H+ + R++    + +A+ L+ +Y
Sbjct: 226 NVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLY 285

Query: 380 VKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFI 439
            KCGD+ +A  +F     K+V  W+S + G + +G GE+ L +F  M   GV P+ ++F+
Sbjct: 286 AKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFV 345

Query: 440 GVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPM 499
            VL  CS  G V EG+  F+SM+ ++ +EP +EHY C+VDL  RAG++ DAV I+++MPM
Sbjct: 346 SVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPM 405

Query: 500 EPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVV 559
           +P A VW SLL A R +  L+L  +A +K+ +LE  N G YVLLS++YA    W++V  V
Sbjct: 406 KPHAAVWSSLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHV 465

Query: 560 REKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPD 619
           R+ +K++ V K PG S +EV  + H F  GD + HP+   I  + + +   LR AGY  D
Sbjct: 466 RQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKS-HPKYTQIDAVWKDISRRLRLAGYKAD 524

Query: 620 HSFVLHDVEEEEKTHSLGYHSEKLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAK 679
            + V+ D++EEEK  +L  HSEK AIA+G++ + E +PIR++KNLRVCGDCH    +I+K
Sbjct: 525 TTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISK 584

Query: 680 VTGREIIVRDANRFHHFKDGYCSCKDYW 707
           +  REIIVRD NRFHHFKDG+CSC  +W
Sbjct: 585 IFNREIIVRDRNRFHHFKDGHCSCNGFW 612



 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 126/290 (43%), Gaps = 61/290 (21%)

Query: 22  TGAISRYARIGQIENARKVFDETP---HIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTP 78
           TG IS YA +G +++  KVF+  P    + RT     AMV A  +      A  LFE  P
Sbjct: 147 TGLISLYAELGCLDSCHKVFNSIPCPDFVCRT-----AMVTACARCGDVVFARKLFEGMP 201

Query: 79  EKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVV----------------------SW 116
           E++ ++WN M+SG+ + G   EA  VF  M +  V                        W
Sbjct: 202 ERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRW 261

Query: 117 -----------------TSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSR 159
                            T++V  Y + G++E+A  +FW M EKNV +W+  L GL  +  
Sbjct: 262 AHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGF 321

Query: 160 VEDARKLFDMMP----VKDVVAVTNMIGGYCEEGRLEEARALFDEMPKR-----NVVTWT 210
            E   +LF +M       + V   +++ G    G ++E +  FD M         +  + 
Sbjct: 322 GEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYG 381

Query: 211 TMVSGYARNRRVDVARKLFEVMPERNEVS-WTAMLMGYTHSGRMREASEF 259
            +V  YAR  R++ A  + + MP +   + W+++L    H+ RM +  E 
Sbjct: 382 CLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLL----HASRMYKNLEL 427



 Score = 88.2 bits (217), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 113/238 (47%), Gaps = 18/238 (7%)

Query: 38  RKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGM 97
           R+ FD  PH+     S  A +      H+      +F + P  + V    MV+   + G 
Sbjct: 136 RRGFDNDPHVQTGLISLYAELGCLDSCHK------VFNSIPCPDFVCRTAMVTACARCGD 189

Query: 98  VAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV----VSWTVMLGG 153
           V  AR++F+ MP R+ ++W +M+ GY Q G   EA  +F  M  + V    V+   +L  
Sbjct: 190 VVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSA 249

Query: 154 LLKDSRVEDAR---KLFDMMPVKDVVAV-TNMIGGYCEEGRLEEARALFDEMPKRNVVTW 209
             +   ++  R      +   +K  V + T ++  Y + G +E+A  +F  M ++NV TW
Sbjct: 250 CTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTW 309

Query: 210 TTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAM 263
           ++ ++G A N   +   +LF +M +     N V++ ++L G +  G + E    FD+M
Sbjct: 310 SSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSM 367



 Score = 83.2 bits (204), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 122/257 (47%), Gaps = 17/257 (6%)

Query: 86  NGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVV 145
            G++S + + G +    +VF+++P  + V  T+MV    + G+V  A +LF  MPE++ +
Sbjct: 147 TGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPI 206

Query: 146 SWTVMLGGLLKDSRVEDARKLFDMMPVKDV----VAVTNMIGGYCEEGRLEEARALFDEM 201
           +W  M+ G  +     +A  +F +M ++ V    VA+ +++    + G L++ R     +
Sbjct: 207 AWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYI 266

Query: 202 PKR----NVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREAS 257
            +      V   TT+V  YA+   ++ A ++F  M E+N  +W++ L G   +G   +  
Sbjct: 267 ERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCL 326

Query: 258 EFFDAMP---VKP-VVACNEMIMGFGFDGDVDRAKAVFEKMR-----ERDDGTWSAMIKV 308
           E F  M    V P  V    ++ G    G VD  +  F+ MR     E     +  ++ +
Sbjct: 327 ELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDL 386

Query: 309 YERKGFELEALGLFARM 325
           Y R G   +A+ +  +M
Sbjct: 387 YARAGRLEDAVSIIQQM 403



 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 78/178 (43%), Gaps = 16/178 (8%)

Query: 10  VCMVQVRFQCTSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQ 69
           V M+ V   CT  GA+ +    G+  ++   + E   I  T      +V  Y +     +
Sbjct: 241 VAMISVLSACTQLGALDQ----GRWAHS---YIERNKIKITVRLATTLVDLYAKCGDMEK 293

Query: 70  AVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMP----VRNVVSWTSMVRGYVQ 125
           A+ +F    EKN+ +W+  ++G   NG   +   +F  M       N V++ S++RG   
Sbjct: 294 AMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSV 353

Query: 126 EGNVEEAERLFWRMPEKNVVSWTVMLGGLLKD-----SRVEDARKLFDMMPVKDVVAV 178
            G V+E +R F  M  +  +   +   G L D      R+EDA  +   MP+K   AV
Sbjct: 354 VGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAV 411


>AT3G15130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:5097153-5099222 REVERSE
           LENGTH=689
          Length = 689

 Score =  373 bits (957), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 220/676 (32%), Positives = 368/676 (54%), Gaps = 41/676 (6%)

Query: 63  QAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRG 122
           Q  Q H    L ++    N+++ N ++  + K      A +VFD+MP RNVVSW++++ G
Sbjct: 24  QGGQVH--CYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSG 81

Query: 123 YVQEGNVEEAERLFWRM------PEKNVVSWTVMLGGLLKDSRVEDARKL--------FD 168
           +V  G+++ +  LF  M      P +   S  +   GLL  + +E   ++        F+
Sbjct: 82  HVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLL--NALEKGLQIHGFCLKIGFE 139

Query: 169 MMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKL 228
           MM    V    +++  Y + GR+ EA  +F  +  R++++W  M++G+        A   
Sbjct: 140 MM----VEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDT 195

Query: 229 FEVMPERN------EVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVAC--NEMIMGFGF 280
           F +M E N      E + T++L   + +G M  A +      V+    C  +  I G   
Sbjct: 196 FGMMQEANIKERPDEFTLTSLLKACSSTG-MIYAGKQIHGFLVRSGFHCPSSATITGSLV 254

Query: 281 D-----GDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFP 335
           D     G +  A+  F++++E+   +WS++I  Y ++G  +EA+GLF R+Q   + ++  
Sbjct: 255 DLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSF 314

Query: 336 XXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRY 395
                            G+Q+ A  V+     +  V ++++ MY+KCG +  A+  F   
Sbjct: 315 ALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEM 374

Query: 396 PLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGR 455
            LKDV+ W  +ITGY +HGLG++++ +F +M    + PD++ ++ VLSACS+SG +KEG 
Sbjct: 375 QLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGE 434

Query: 456 EIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRT 515
           E+F  +   + ++P +EHYAC+VDLLGRAG++ +A  +++ MP++P+  +W +LL  CR 
Sbjct: 435 ELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRV 494

Query: 516 HMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYS 575
           H  ++L +   + L +++ KN   YV++S++Y   G W +    RE    + + K  G S
Sbjct: 495 HGDIELGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMS 554

Query: 576 WIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLR-DAGYSPDHSFVLHDVEEEEKTH 634
           W+E+E++ H F  G+++ HP  P+I + L+  +  LR + GY       LHD+++E K  
Sbjct: 555 WVEIEREVHFFRSGEDS-HPLTPVIQETLKEAERRLREELGYVYGLKHELHDIDDESKEE 613

Query: 635 SLGYHSEKLAIAYGLLK---VPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIVRDAN 691
           +L  HSEKLAI   L       +G  IRV KNLRVC DCH  IK ++K+T    +VRDA 
Sbjct: 614 NLRAHSEKLAIGLALATGGLNQKGKTIRVFKNLRVCVDCHEFIKGLSKITKIAYVVRDAV 673

Query: 692 RFHHFKDGYCSCKDYW 707
           RFH F+DG CSC DYW
Sbjct: 674 RFHSFEDGCCSCGDYW 689



 Score =  108 bits (271), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 153/347 (44%), Gaps = 67/347 (19%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNI-- 82
           +  Y++ G+I  A KVF     + R+  SWNAM+A +  A    +A+  F    E NI  
Sbjct: 149 VDMYSKCGRINEAEKVFRRI--VDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKE 206

Query: 83  -------------VSWNGMV------------SGF----------------VKNGMVAEA 101
                         S  GM+            SGF                VK G +  A
Sbjct: 207 RPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSA 266

Query: 102 RRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLG---GLLKDS 158
           R+ FD +  + ++SW+S++ GY QEG   EA  LF R+ E N    +  L    G+  D 
Sbjct: 267 RKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADF 326

Query: 159 RVEDARKLFDMMPVK-----DVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMV 213
            +    K    + VK     +   + +++  Y + G ++EA   F EM  ++V++WT ++
Sbjct: 327 ALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVI 386

Query: 214 SGYARNRRVDVARKLFEVMPERN----EVSWTAMLMGYTHSGRMREASEFFDAM----PV 265
           +GY ++     + ++F  M   N    EV + A+L   +HSG ++E  E F  +     +
Sbjct: 387 TGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGI 446

Query: 266 KPVV---ACNEMIMGFGFDGDVDRAKAVFEKMRERDD-GTWSAMIKV 308
           KP V   AC  ++   G  G +  AK + + M  + + G W  ++ +
Sbjct: 447 KPRVEHYAC--VVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSL 491



 Score = 77.8 bits (190), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 90/162 (55%), Gaps = 2/162 (1%)

Query: 351 DHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGY 410
           D G QVH  L++S    +L  ++ LI MY KC + + A  +F+  P ++VV W+++++G+
Sbjct: 23  DQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGH 82

Query: 411 SQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPG 470
             +G  + +L++F +M   G+ P++ +F   L AC     +++G +I      K   E  
Sbjct: 83  VLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQI-HGFCLKIGFEMM 141

Query: 471 IEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGA 512
           +E    +VD+  + G++N+A ++  ++ ++   I W +++  
Sbjct: 142 VEVGNSLVDMYSKCGRINEAEKVFRRI-VDRSLISWNAMIAG 182



 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 108/242 (44%), Gaps = 34/242 (14%)

Query: 51  TSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPV 110
           TS  N++V  Y +     +A   F     K+++SW  +++G+ K+G+  ++ R+F  M  
Sbjct: 348 TSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLR 407

Query: 111 RNV----VSWTSMVRGYVQEGNVEEAERLFWRMPEKN-----VVSWTVMLGGLLKDSRVE 161
            N+    V + +++      G ++E E LF ++ E +     V  +  ++  L +  R++
Sbjct: 408 HNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLK 467

Query: 162 DARKLFDMMPVKDVVAVTNMIGGYCE-EGRLE---EARALFDEMPKRNVVTWTTMVSGYA 217
           +A+ L D MP+K  V +   +   C   G +E   E   +   +  +N   +  M + Y 
Sbjct: 468 EAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNPANYVMMSNLYG 527

Query: 218 R----NRRVDVARKLFEVMPERNE--VSWTAMLMGYTHSGRMREASEFF----DAMPVKP 267
           +    N + + AR+L  +   + E  +SW            +     FF    D+ P+ P
Sbjct: 528 QAGYWNEQGN-ARELGNIKGLKKEAGMSWV----------EIEREVHFFRSGEDSHPLTP 576

Query: 268 VV 269
           V+
Sbjct: 577 VI 578


>AT2G13600.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:5671493-5673586 FORWARD
           LENGTH=697
          Length = 697

 Score =  373 bits (957), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 212/612 (34%), Positives = 327/612 (53%), Gaps = 55/612 (8%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVV 114
           N ++ AY +         +F+  P++NI +WN +V+G  K G + EA  +F +MP R+  
Sbjct: 59  NRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQC 118

Query: 115 SWTSMVRGYVQEGNVEEAERLFWRMPEKNVV----SWTVMLG---GLLKDSRVEDARKLF 167
           +W SMV G+ Q    EEA   F  M ++  V    S+  +L    GL   ++      L 
Sbjct: 119 TWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLI 178

Query: 168 DMMP-VKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARN----RRV 222
              P + DV   + ++  Y + G + +A+ +FDEM  RNVV+W ++++ + +N      +
Sbjct: 179 AKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEAL 238

Query: 223 DVARKLFEVMPERNEV----------SWTAMLMG-------------------------- 246
           DV + + E   E +EV          S +A+ +G                          
Sbjct: 239 DVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDM 298

Query: 247 YTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMI 306
           Y    R++EA   FD+MP++ V+A   MI G+        A+ +F KM ER+  +W+A+I
Sbjct: 299 YAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALI 358

Query: 307 KVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEF- 365
             Y + G   EAL LF  ++RE                        G Q H  +++  F 
Sbjct: 359 AGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFK 418

Query: 366 -----DQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEAL 420
                + D++V ++LI MYVKCG +     +F +   +D V WN+MI G++Q+G G EAL
Sbjct: 419 FQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEAL 478

Query: 421 NVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDL 480
            +FR+M  SG  PD I+ IGVLSAC ++G V+EGR  F SM   + V P  +HY CMVDL
Sbjct: 479 ELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDL 538

Query: 481 LGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPY 540
           LGRAG + +A  ++E+MPM+PD+++WGSLL AC+ H  + L +   EKL ++EP N+GPY
Sbjct: 539 LGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPY 598

Query: 541 VLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPII 600
           VLLS+MYA  G+WEDV  VR+ ++   V K PG SWI+++   H+F+  D + HP +  I
Sbjct: 599 VLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKS-HPRKKQI 657

Query: 601 MKMLERLDGLLR 612
             +L+ L   +R
Sbjct: 658 HSLLDILIAEMR 669



 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 33/188 (17%)

Query: 354 RQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWN--------- 404
           R VHA +++S F  ++++ + LI  Y KCG L   + +F++ P +++  WN         
Sbjct: 40  RYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKL 99

Query: 405 ----------------------SMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVL 442
                                 SM++G++QH   EEAL  F  M   G   ++ SF  VL
Sbjct: 100 GFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVL 159

Query: 443 SACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPD 502
           SACS    + +G ++  S+  K      +   + +VD+  + G VNDA  + ++M  + +
Sbjct: 160 SACSGLNDMNKGVQV-HSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMG-DRN 217

Query: 503 AIVWGSLL 510
            + W SL+
Sbjct: 218 VVSWNSLI 225



 Score = 80.1 bits (196), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 121/306 (39%), Gaps = 92/306 (30%)

Query: 21  STGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEK 80
           S   +  YA+  +I+ AR +FD  P   R   +  +M++ Y  A     A  +F    E+
Sbjct: 292 SNAFVDMYAKCSRIKEARFIFDSMP--IRNVIAETSMISGYAMAASTKAARLMFTKMAER 349

Query: 81  NIVSWNGMVSGFVKNGMVAEARRVF------DAMPVR----------------------- 111
           N+VSWN +++G+ +NG   EA  +F         P                         
Sbjct: 350 NVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAH 409

Query: 112 ----------------NVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLL 155
                           ++    S++  YV+ G VEE   +F +M E++ VSW  M+ G  
Sbjct: 410 VHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFA 469

Query: 156 KDSRVEDARKLF-DMMPVKDVVAVTNMIG--------GYCEEGR---------------- 190
           ++    +A +LF +M+   +      MIG        G+ EEGR                
Sbjct: 470 QNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLR 529

Query: 191 ---------------LEEARALFDEMPKR-NVVTWTTMVSGYARNRRVD----VARKLFE 230
                          LEEA+++ +EMP + + V W ++++    +R +     VA KL E
Sbjct: 530 DHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLE 589

Query: 231 VMPERN 236
           V P  +
Sbjct: 590 VEPSNS 595


>AT5G65570.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:26203968-26206184 FORWARD
           LENGTH=738
          Length = 738

 Score =  372 bits (954), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 228/714 (31%), Positives = 379/714 (53%), Gaps = 46/714 (6%)

Query: 14  QVRFQCTSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTL 73
           Q R  C +   ++      Q+   R+  DE     R+ S    + A   ++  P +    
Sbjct: 51  QFRLLCITCDTLTTTHNFSQL--LRQCIDE-----RSISGIKTIQAHMLKSGFPAE---- 99

Query: 74  FETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAE 133
                    +S + +V   +K G +  AR+VFD M  R++V+W S++   ++    +EA 
Sbjct: 100 ---------ISGSKLVDASLKCGDIDYARQVFDGMSERHIVTWNSLIAYLIKHRRSKEAV 150

Query: 134 RLFWRMPEKNVVSWTVMLGGLLK---DSRVE-DARKLFDM-----MPVKDVVAVTNMIGG 184
            ++  M   NV+     L  + K   D  +E +A++   +     + V +V   + ++  
Sbjct: 151 EMYRLMITNNVLPDEYTLSSVFKAFSDLSLEKEAQRSHGLAVILGLEVSNVFVGSALVDM 210

Query: 185 YCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVM----PERNEVSW 240
           Y + G+  EA+ + D + +++VV  T ++ GY++      A K F+ M     + NE ++
Sbjct: 211 YVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEKVQPNEYTY 270

Query: 241 TAMLMGYTHSGRMREAS--EFFDAMPVKP-----VVACNEMIMGFGFDGDVDRAKAVFEK 293
            ++L+     G +++    +    + VK      + +   ++  +     VD +  VF+ 
Sbjct: 271 ASVLIS---CGNLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLRVFKC 327

Query: 294 MRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHG 353
           +   +  +W+++I    + G E  AL  F +M R+    N                 + G
Sbjct: 328 IEYPNQVSWTSLISGLVQNGREEMALIEFRKMMRDSIKPNSFTLSSALRGCSNLAMFEEG 387

Query: 354 RQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQH 413
           RQ+H  + +  FD+D Y  S LI +Y KCG    A+ +F+     DV+  N+MI  Y+Q+
Sbjct: 388 RQIHGIVTKYGFDRDKYAGSGLIDLYGKCGCSDMARLVFDTLSEVDVISLNTMIYSYAQN 447

Query: 414 GLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEH 473
           G G EAL++F  M   G+ P+D++ + VL AC+ S  V+EG E+F+S + K ++    +H
Sbjct: 448 GFGREALDLFERMINLGLQPNDVTVLSVLLACNNSRLVEEGCELFDSFR-KDKIMLTNDH 506

Query: 474 YACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLE 533
           YACMVDLLGRAG++ +A E++    + PD ++W +LL AC+ H K+++AE    K+ ++E
Sbjct: 507 YACMVDLLGRAGRLEEA-EMLTTEVINPDLVLWRTLLSACKVHRKVEMAERITRKILEIE 565

Query: 534 PKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNC 593
           P + G  +L+S++YAS G+W  V  ++ K+K   + K P  SW+E+ K+ H F+ GD   
Sbjct: 566 PGDEGTLILMSNLYASTGKWNRVIEMKSKMKDMKLKKNPAMSWVEINKETHTFMAGDLFS 625

Query: 594 HPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDVEEEEKTHSLGYHSEKLAIAYGLLKVP 653
           HP    I++ LE L    +D GY  D S V  D+EE  K  SL  HSEKLAIA+ + +  
Sbjct: 626 HPNSEQILENLEELIKKSKDLGYVEDKSCVFQDMEETAKERSLHQHSEKLAIAFAVWR-N 684

Query: 654 EGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIVRDANRFHHFKDGYCSCKDYW 707
            G  IR++KNLRVC DCHS IK++++V  REII RD+ RFHHF+DG CSC DYW
Sbjct: 685 VGGSIRILKNLRVCVDCHSWIKIVSRVMKREIICRDSKRFHHFRDGSCSCGDYW 738


>AT1G15510.1 | Symbols: ATECB2, ECB2, VAC1 | Tetratricopeptide
           repeat (TPR)-like superfamily protein |
           chr1:5329111-5331711 FORWARD LENGTH=866
          Length = 866

 Score =  371 bits (952), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 232/737 (31%), Positives = 362/737 (49%), Gaps = 62/737 (8%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFE--------- 75
           ++ + R G + +A  VF +     R   SWN +V  Y +     +A+ L+          
Sbjct: 136 LAMFVRFGNLVDAWYVFGKMSE--RNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVK 193

Query: 76  ----TTP---------------------------EKNIVSWNGMVSGFVKNGMVAEARRV 104
               T P                           E +I   N +++ +VK G V  AR +
Sbjct: 194 PDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLL 253

Query: 105 FDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM------PEKNVVSWTVMLGGLLKDS 158
           FD MP R+++SW +M+ GY + G   E   LF+ M      P+   ++  +    LL D 
Sbjct: 254 FDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDR 313

Query: 159 RVEDARKLFDMMP--VKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGY 216
           R+      + +      D+    ++   Y   G   EA  LF  M ++++V+WTTM+SGY
Sbjct: 314 RLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGY 373

Query: 217 ARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEF----FDAMPVKPV 268
             N   D A   + +M +     +E++  A+L      G +    E       A  +  V
Sbjct: 374 EYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYV 433

Query: 269 VACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQRE 328
           +  N +I  +     +D+A  +F  +  ++  +W+++I          EAL +F R  + 
Sbjct: 434 IVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEAL-IFLRQMKM 492

Query: 329 GAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRA 388
               N                   G+++HA ++R+    D ++ +AL+ MYV+CG +  A
Sbjct: 493 TLQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTA 552

Query: 389 KWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYS 448
              FN    KDV  WN ++TGYS+ G G   + +F  M  S V PD+I+FI +L  CS S
Sbjct: 553 WSQFNSQK-KDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKS 611

Query: 449 GKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGS 508
             V++G   F  M+  Y V P ++HYAC+VDLLGRAG++ +A + ++KMP+ PD  VWG+
Sbjct: 612 QMVRQGLMYFSKME-DYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGA 670

Query: 509 LLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSV 568
           LL ACR H K+DL E++ + + +L+ K+ G Y+LL ++YA  G+W +V  VR  +K   +
Sbjct: 671 LLNACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCGKWREVAKVRRMMKENGL 730

Query: 569 IKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDVE 628
               G SW+EV+ K H F+  D+  HP+   I  +LE     + + G +        D  
Sbjct: 731 TVDAGCSWVEVKGKVHAFL-SDDKYHPQTKEINTVLEGFYEKMSEVGLTKISESSSMDET 789

Query: 629 EEEKTHSLGYHSEKLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIVR 688
           E  +      HSE+ AIA+GL+    GMPI V KNL +C +CH  +K I+K   REI VR
Sbjct: 790 EISRDEIFCGHSERKAIAFGLINTVPGMPIWVTKNLSMCENCHDTVKFISKTVRREISVR 849

Query: 689 DANRFHHFKDGYCSCKD 705
           DA  FHHFKDG CSC D
Sbjct: 850 DAEHFHHFKDGECSCGD 866



 Score =  126 bits (317), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 117/449 (26%), Positives = 202/449 (44%), Gaps = 35/449 (7%)

Query: 86  NGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM-----P 140
           N  ++ FV+ G + +A  VF  M  RN+ SW  +V GY ++G  +EA  L+ RM      
Sbjct: 133 NAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGV 192

Query: 141 EKNVVSWTVML---GGLL-----KDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLE 192
           + +V ++  +L   GG+      K+  V   R  +++    D+  V  +I  Y + G ++
Sbjct: 193 KPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYEL----DIDVVNALITMYVKCGDVK 248

Query: 193 EARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVM------PE---RNEVSWTAM 243
            AR LFD MP+R++++W  M+SGY  N       +LF  M      P+      V     
Sbjct: 249 SARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACE 308

Query: 244 LMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWS 303
           L+G    GR   A        V  +  CN +   +   G    A+ +F +M  +D  +W+
Sbjct: 309 LLGDRRLGRDIHAYVITTGFAVD-ISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWT 367

Query: 304 AMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRS 363
            MI  YE      +A+  +  M ++    +                 D G ++H   +++
Sbjct: 368 TMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKA 427

Query: 364 EFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVF 423
                + VA+ LI MY KC  + +A  IF+  P K+V+ W S+I G   +    EAL   
Sbjct: 428 RLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFL 487

Query: 424 RDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYA--CMVDLL 481
           R M ++ + P+ I+    L+AC+  G +  G+EI   +    +   G++ +    ++D+ 
Sbjct: 488 RQMKMT-LQPNAITLTAALAACARIGALMCGKEIHAHV---LRTGVGLDDFLPNALLDMY 543

Query: 482 GRAGQVNDAVEIVEKMPMEPDAIVWGSLL 510
            R G++N A    +    + D   W  LL
Sbjct: 544 VRCGRMNTAWS--QFNSQKKDVTSWNILL 570



 Score =  117 bits (293), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 156/338 (46%), Gaps = 42/338 (12%)

Query: 184 GYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVAR-KLFEVMPERNEVSWTA 242
           G C  G+LEEA  L + M +  V          A +  V VA  +L E    + E S   
Sbjct: 68  GLCANGKLEEAMKLLNSMQELRV----------AVDEDVFVALVRLCEWKRAQEEGSKVY 117

Query: 243 MLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTW 302
            +   + S    E    F AM V+               G++  A  VF KM ER+  +W
Sbjct: 118 SIALSSMSSLGVELGNAFLAMFVRF--------------GNLVDAWYVFGKMSERNLFSW 163

Query: 303 SAMIKVYERKGFELEALGLFARMQREGAA----LNFPXXXXXXXXXXXXXXXDHGRQVHA 358
           + ++  Y ++G+  EA+ L+ RM   G        FP                 G++VH 
Sbjct: 164 NVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLA---RGKEVHV 220

Query: 359 RLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEE 418
            +VR  ++ D+ V +ALITMYVKCGD+  A+ +F+R P +D++ WN+MI+GY ++G+  E
Sbjct: 221 HVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHE 280

Query: 419 ALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPG--IEHYAC 476
            L +F  M    V PD ++   V+SAC   G  + GR+I       Y +  G  ++   C
Sbjct: 281 GLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIH-----AYVITTGFAVDISVC 335

Query: 477 --MVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGA 512
             +  +   AG   +A ++  +M    D + W +++  
Sbjct: 336 NSLTQMYLNAGSWREAEKLFSRME-RKDIVSWTTMISG 372


>AT5G06540.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:1999181-2001049 REVERSE
           LENGTH=622
          Length = 622

 Score =  370 bits (950), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 185/461 (40%), Positives = 284/461 (61%)

Query: 247 YTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMI 306
           Y + G +  A   F  M  + VV+   M+ G+   G V+ A+ +F++M  R+  TWS MI
Sbjct: 162 YANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMI 221

Query: 307 KVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFD 366
             Y +     +A+ LF  M+REG   N                 + G + +  +V+S   
Sbjct: 222 NGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMT 281

Query: 367 QDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDM 426
            +L + +AL+ M+ +CGD+ +A  +F   P  D + W+S+I G + HG   +A++ F  M
Sbjct: 282 VNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQM 341

Query: 427 CLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQ 486
              G  P D++F  VLSACS+ G V++G EI+E+MK  + +EP +EHY C+VD+LGRAG+
Sbjct: 342 ISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGK 401

Query: 487 VNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHM 546
           + +A   + KM ++P+A + G+LLGAC+ +   ++AE     L +++P+++G YVLLS++
Sbjct: 402 LAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNI 461

Query: 547 YASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLER 606
           YA  G+W+ +E +R+ +K + V K PG+S IE++ K + F  GD+  HPE   I +  E 
Sbjct: 462 YACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWEE 521

Query: 607 LDGLLRDAGYSPDHSFVLHDVEEEEKTHSLGYHSEKLAIAYGLLKVPEGMPIRVMKNLRV 666
           + G +R  GY  +      DV+EEEK  S+  HSEKLAIAYG++K   G  IR++KNLRV
Sbjct: 522 ILGKIRLIGYKGNTGDAFFDVDEEEKESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLRV 581

Query: 667 CGDCHSAIKLIAKVTGREIIVRDANRFHHFKDGYCSCKDYW 707
           C DCH+  KLI++V GRE+IVRD NRFHHF++G CSC+DYW
Sbjct: 582 CEDCHTVTKLISEVYGRELIVRDRNRFHHFRNGVCSCRDYW 622



 Score =  109 bits (273), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 158/354 (44%), Gaps = 35/354 (9%)

Query: 1   MGYGYSTL------RVCMVQVRFQCTSTGA--ISRYARIGQIENARKVFDET--PHIHRT 50
           +GY Y          + +  +  +C STGA     +    Q+  +R   D    P + + 
Sbjct: 67  LGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKA 126

Query: 51  TSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPV 110
           +S    ++       Q H  +  F    + ++   N +V  +   G +A A R+F  M  
Sbjct: 127 SSEMECVLVG----EQTHSQIVRFGF--QNDVYVENSLVHMYANCGFIAAAGRIFGQMGF 180

Query: 111 RNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMM 170
           R+VVSWTSMV GY + G VE A  +F  MP +N+ +W++M+ G  K++  E A  LF+ M
Sbjct: 181 RDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFM 240

Query: 171 PVKDVVA----VTNMIGGYCEEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRRV 222
             + VVA    + ++I      G LE     ++ + K     N++  T +V  + R   +
Sbjct: 241 KREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDI 300

Query: 223 DVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMP----VKPVVACNEMIMGF 278
           + A  +FE +PE + +SW++++ G    G   +A  +F  M     +   V    ++   
Sbjct: 301 EKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSAC 360

Query: 279 GFDGDVDRAKAVFEKMRERDDGT------WSAMIKVYERKGFELEALGLFARMQ 326
              G V++   ++E M+ +D G       +  ++ +  R G   EA     +M 
Sbjct: 361 SHGGLVEKGLEIYENMK-KDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMH 413



 Score = 89.0 bits (219), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 113/264 (42%), Gaps = 39/264 (14%)

Query: 287 AKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGA---ALNFPXXXXXXXX 343
           A  +F +++  +   ++ +I+ +       +A G + +M +       + FP        
Sbjct: 70  AYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSE 129

Query: 344 XXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMW 403
                    G Q H+++VR  F  D+YV ++L+ MY  CG +  A  IF +   +DVV W
Sbjct: 130 MECVLV---GEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSW 186

Query: 404 NSMITGYSQHGLGEEALNVFRDM-------------------CL------------SGVP 432
            SM+ GY + G+ E A  +F +M                   C              GV 
Sbjct: 187 TSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVV 246

Query: 433 PDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVE 492
            ++   + V+S+C++ G ++ G   +E +  K  +   +     +VD+  R G +  A+ 
Sbjct: 247 ANETVMVSVISSCAHLGALEFGERAYEYV-VKSHMTVNLILGTALVDMFWRCGDIEKAIH 305

Query: 493 IVEKMPMEPDAIVWGSLLGACRTH 516
           + E +P E D++ W S++     H
Sbjct: 306 VFEGLP-ETDSLSWSSIIKGLAVH 328



 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 118/260 (45%), Gaps = 19/260 (7%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVS 84
           +  YA  G I  A ++F +     R   SW +MVA Y +      A  +F+  P +N+ +
Sbjct: 159 VHMYANCGFIAAAGRIFGQMGF--RDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFT 216

Query: 85  WNGMVSGFVKNGMVAEARRVFDAMPVRNVVS----WTSMVRGYVQEGNVEEAERLFWRMP 140
           W+ M++G+ KN    +A  +F+ M    VV+      S++      G +E  ER +  + 
Sbjct: 217 WSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVV 276

Query: 141 EK----NVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARA 196
           +     N++  T ++    +   +E A  +F+ +P  D ++ +++I G    G   +A  
Sbjct: 277 KSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMH 336

Query: 197 LFDEMPKRNV----VTWTTMVSGYARNRRVDVARKLFEVMPERNEVS-----WTAMLMGY 247
            F +M         VT+T ++S  +    V+   +++E M + + +      +  ++   
Sbjct: 337 YFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDML 396

Query: 248 THSGRMREASEFFDAMPVKP 267
             +G++ EA  F   M VKP
Sbjct: 397 GRAGKLAEAENFILKMHVKP 416


>AT5G48910.1 | Symbols: LPA66 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:19832969-19834909 REVERSE
           LENGTH=646
          Length = 646

 Score =  369 bits (948), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 207/573 (36%), Positives = 316/573 (55%), Gaps = 57/573 (9%)

Query: 191 LEEARALFDEMPKRNVVTWTTMVSGYARNR--RVDVARKLF-EVMP----ERNEVSWTAM 243
           L+ A  +F++MP+RN  +W T++ G++ +   +  +A  LF E+M     E N  ++ ++
Sbjct: 75  LDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSV 134

Query: 244 LMGYTHSGRMREA--------------SEFFDAMPVKPVVAC------------------ 271
           L     +G+++E                EF  +  V+  V C                  
Sbjct: 135 LKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKD 194

Query: 272 -----------------NEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGF 314
                            N MI G+   GD   A+ +F+KMR+R   +W+ MI  Y   GF
Sbjct: 195 MVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGF 254

Query: 315 ELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASA 374
             +A+ +F  M++     N+                + G  +H     S    D  + SA
Sbjct: 255 FKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSA 314

Query: 375 LITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPD 434
           LI MY KCG + +A  +F R P ++V+ W++MI G++ HG   +A++ F  M  +GV P 
Sbjct: 315 LIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPS 374

Query: 435 DISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIV 494
           D+++I +L+ACS+ G V+EGR  F  M     +EP IEHY CMVDLLGR+G +++A E +
Sbjct: 375 DVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFI 434

Query: 495 EKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWE 554
             MP++PD ++W +LLGACR    +++ +     L  + P ++G YV LS+MYAS+G W 
Sbjct: 435 LNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWS 494

Query: 555 DVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDA 614
           +V  +R ++K + + K PG S I+++   H FV  D++ HP+   I  ML  +   LR A
Sbjct: 495 EVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDS-HPKAKEINSMLVEISDKLRLA 553

Query: 615 GYSPDHSFVLHDVEEEEKTHSLGYHSEKLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAI 674
           GY P  + VL ++EEE+K + L YHSEK+A A+GL+    G PIR++KNLR+C DCHS+I
Sbjct: 554 GYRPITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSI 613

Query: 675 KLIAKVTGREIIVRDANRFHHFKDGYCSCKDYW 707
           KLI+KV  R+I VRD  RFHHF+DG CSC DYW
Sbjct: 614 KLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646



 Score = 87.4 bits (215), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 121/253 (47%), Gaps = 24/253 (9%)

Query: 82  IVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPE 141
           IV WN M+ G+++ G    AR +FD M  R+VVSW +M+ GY   G  ++A  +F  M +
Sbjct: 208 IVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKK 267

Query: 142 ----KNVVSWTVMLGGLLKDSRVEDARKLF-----DMMPVKDVVAVTNMIGGYCEEGRLE 192
                N V+   +L  + +   +E    L        + + DV+  + +I  Y + G +E
Sbjct: 268 GDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLG-SALIDMYSKCGIIE 326

Query: 193 EARALFDEMPKRNVVTWTTMVSGYARNRR----VDVARKLFEVMPERNEVSWTAMLMGYT 248
           +A  +F+ +P+ NV+TW+ M++G+A + +    +D   K+ +     ++V++  +L   +
Sbjct: 327 KAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACS 386

Query: 249 HSGRMREASEFFDAM-------PVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRER-DDG 300
           H G + E   +F  M       P      C  M+   G  G +D A+     M  + DD 
Sbjct: 387 HGGLVEEGRRYFSQMVSVDGLEPRIEHYGC--MVDLLGRSGLLDEAEEFILNMPIKPDDV 444

Query: 301 TWSAMIKVYERKG 313
            W A++     +G
Sbjct: 445 IWKALLGACRMQG 457



 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 137/297 (46%), Gaps = 37/297 (12%)

Query: 34  IENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQ--AVTLF-----ETTPEKNIVSWN 86
           ++ A K+F++ P   R   SWN ++  + ++ +     A+TLF     +   E N  ++ 
Sbjct: 75  LDYAHKIFNQMPQ--RNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFP 132

Query: 87  GMVSGFVKNGMVAEARRVFDAMPVR-----NVVSWTSMVRGYVQEGNVEEAERLFW---- 137
            ++    K G + E +++   + ++     +    +++VR YV  G +++A  LF+    
Sbjct: 133 SVLKACAKTGKIQEGKQIH-GLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNII 191

Query: 138 ----------RMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCE 187
                     R  +  +V W VM+ G ++    + AR LFD M  + VV+   MI GY  
Sbjct: 192 EKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSL 251

Query: 188 EGRLEEARALFDEMPK----RNVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVS 239
            G  ++A  +F EM K     N VT  +++   +R   +++   L     +     ++V 
Sbjct: 252 NGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVL 311

Query: 240 WTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRE 296
            +A++  Y+  G + +A   F+ +P + V+  + MI GF   G    A   F KMR+
Sbjct: 312 GSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQ 368



 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 119/289 (41%), Gaps = 64/289 (22%)

Query: 283 DVDRAKAVFEKMRERDDGTWSAMIKVYERKGFE--LEALGLFARMQR----EGAALNFPX 336
           D+D A  +F +M +R+  +W+ +I+ +     +  L A+ LF  M      E     FP 
Sbjct: 74  DLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFP- 132

Query: 337 XXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKC-------------- 382
                           G+Q+H   ++  F  D +V S L+ MYV C              
Sbjct: 133 --SVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNI 190

Query: 383 -------------------------------GDLVRAKWIFNRYPLKDVVMWNSMITGYS 411
                                          GD   A+ +F++   + VV WN+MI+GYS
Sbjct: 191 IEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYS 250

Query: 412 QHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGI 471
            +G  ++A+ VFR+M    + P+ ++ + VL A S  G ++ G  +       Y  + GI
Sbjct: 251 LNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLH-----LYAEDSGI 305

Query: 472 E----HYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTH 516
                  + ++D+  + G +  A+ + E++P E + I W +++     H
Sbjct: 306 RIDDVLGSALIDMYSKCGIIEKAIHVFERLPRE-NVITWSAMINGFAIH 353



 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 93/444 (20%), Positives = 174/444 (39%), Gaps = 105/444 (23%)

Query: 128 NVEEAERLFWRMPEKNVVSWTVMLGG------------------LLKDSRVEDARKLFDM 169
           +++ A ++F +MP++N  SW  ++ G                  ++ D  VE  R  F  
Sbjct: 74  DLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPS 133

Query: 170 -------------------MPVK-----DVVAVTNMIGGYCEEGRLEEARALF------- 198
                              + +K     D   ++N++  Y   G +++AR LF       
Sbjct: 134 VLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEK 193

Query: 199 -----DEMPKRN--VVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSG 251
                 +  KR+  +V W  M+ GY R      AR LF+ M +R+ VSW  M+ GY+ +G
Sbjct: 194 DMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNG 253

Query: 252 RMREASEFFDAM-------------PVKPVVA--------------------------CN 272
             ++A E F  M              V P ++                           +
Sbjct: 254 FFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGS 313

Query: 273 EMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAAL 332
            +I  +   G +++A  VFE++   +  TWSAMI  +   G   +A+  F +M++ G   
Sbjct: 314 ALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRP 373

Query: 333 NFPXXXXXXXXXXXXXXXDHGRQVHARLVRSE-FDQDLYVASALITMYVKCGDLVRAKWI 391
           +                 + GR+  +++V  +  +  +     ++ +  + G L  A+  
Sbjct: 374 SDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEF 433

Query: 392 FNRYPLK-DVVMWNSMITGYSQHG---LGEEALNVFRDMCLSGVPPDDISFIGVLSACSY 447
               P+K D V+W +++      G   +G+   N+  DM    VP D  +++ + +  + 
Sbjct: 434 ILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDM----VPHDSGAYVALSNMYAS 489

Query: 448 SGKVKEGREIFESMKCK-YQVEPG 470
            G   E  E+   MK K  + +PG
Sbjct: 490 QGNWSEVSEMRLRMKEKDIRKDPG 513



 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 132/320 (41%), Gaps = 44/320 (13%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNI-- 82
           I  Y R+G  + AR +FD+     R+  SWN M++ Y        AV +F    + +I  
Sbjct: 215 IDGYMRLGDCKAARMLFDKMR--QRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRP 272

Query: 83  --VSWNGMVSGFVKNGM--VAEARRVF--DAMPVRNVVSWTSMVRGYVQEGNVEEAERLF 136
             V+   ++    + G   + E   ++  D+    + V  ++++  Y + G +E+A  +F
Sbjct: 273 NYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVF 332

Query: 137 WRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDV----VAVTNMIGGYCEEGRLE 192
            R+P +NV++W+ M+ G     +  DA   F  M    V    VA  N++      G +E
Sbjct: 333 ERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVE 392

Query: 193 EARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGR 252
           E R  F +M           V G               + P          L+G   SG 
Sbjct: 393 EGRRYFSQM---------VSVDG---------------LEPRIEHYGCMVDLLG--RSGL 426

Query: 253 MREASEFFDAMPVKPVVACNEMIMGFG-FDGDVD---RAKAVFEKMRERDDGTWSAMIKV 308
           + EA EF   MP+KP     + ++G     G+V+   R   +   M   D G + A+  +
Sbjct: 427 LDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNM 486

Query: 309 YERKGFELEALGLFARMQRE 328
           Y  +G   E   +  RM+ +
Sbjct: 487 YASQGNWSEVSEMRLRMKEK 506



 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 106/231 (45%), Gaps = 25/231 (10%)

Query: 355 QVHARLVRSEFDQDLYVASALI----TMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGY 410
           Q+HA  ++S   +D   A+ ++    T  +   DL  A  IFN+ P ++   WN++I G+
Sbjct: 41  QIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGF 100

Query: 411 SQHGLGEE--ALNVFRDMCLSG-VPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQV 467
           S+    +   A+ +F +M     V P+  +F  VL AC+ +GK++EG++I   +  KY  
Sbjct: 101 SESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQI-HGLALKYGF 159

Query: 468 EPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIV-------------WGSLLGACR 514
                  + +V +    G + DA  +  K  +E D +V             W  ++    
Sbjct: 160 GGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDG-- 217

Query: 515 THMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWED-VEVVREKIK 564
            +M+L   + A     ++  ++   +  +   Y+  G ++D VEV RE  K
Sbjct: 218 -YMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKK 267


>AT3G62890.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:23246168-23247973 FORWARD
           LENGTH=573
          Length = 573

 Score =  369 bits (947), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 190/474 (40%), Positives = 286/474 (60%), Gaps = 8/474 (1%)

Query: 241 TAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDG 300
           T++L  Y+  G +R A   FD    K + A N ++  +   G +D A+ +F++M ER+  
Sbjct: 101 TSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVI 160

Query: 301 TWSAMIKVYERKGFELEALGLFARMQ--REGAALNFPXXXXXXXXXXX---XXXXDHGRQ 355
           +WS +I  Y   G   EAL LF  MQ  +   A   P                  + G+ 
Sbjct: 161 SWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKW 220

Query: 356 VHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRY-PLKDVVMWNSMITGYSQHG 414
           VHA + +   + D+ + +ALI MY KCG L RAK +FN     KDV  +++MI   + +G
Sbjct: 221 VHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYG 280

Query: 415 LGEEALNVFRDMCLS-GVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEH 473
           L +E   +F +M  S  + P+ ++F+G+L AC + G + EG+  F+ M  ++ + P I+H
Sbjct: 281 LTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQH 340

Query: 474 YACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLE 533
           Y CMVDL GR+G + +A   +  MPMEPD ++WGSLL   R    +   E A+++L +L+
Sbjct: 341 YGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELD 400

Query: 534 PKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNC 593
           P N+G YVLLS++YA  GRW +V+ +R +++ + + K+PG S++EVE   H FV GD + 
Sbjct: 401 PMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDES- 459

Query: 594 HPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDVEEEEKTHSLGYHSEKLAIAYGLLKVP 653
             E   I  ML+ +   LR+AGY  D   VL D+ E++K  +L YHSEKLAIA+ L+K  
Sbjct: 460 QQESERIYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTR 519

Query: 654 EGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIVRDANRFHHFKDGYCSCKDYW 707
            G P+R++KNLR+CGDCH  +K+I+K+  REI+VRD NRFHHF+DG CSC+D+W
Sbjct: 520 PGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRDFW 573



 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 159/336 (47%), Gaps = 30/336 (8%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKN 81
           T  ++ Y+  G + +A++VFD++    +   +WN++V AY +A     A  LF+  PE+N
Sbjct: 101 TSLLNMYSSCGDLRSAQRVFDDSGS--KDLPAWNSVVNAYAKAGLIDDARKLFDEMPERN 158

Query: 82  IVSWNGMVSGFVKNGMVAEARRVFDAMPV---------RNVVSWTSMVRGYVQEGNVEEA 132
           ++SW+ +++G+V  G   EA  +F  M +          N  + ++++    + G +E+ 
Sbjct: 159 VISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQG 218

Query: 133 ERLFWRMP----EKNVVSWTVMLGGLLKDSRVEDARKLFDMM-PVKDVVAVTNMIGGYCE 187
           + +   +     E ++V  T ++    K   +E A+++F+ +   KDV A + MI     
Sbjct: 219 KWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAM 278

Query: 188 EGRLEEARALFDEMPKR-----NVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVS--- 239
            G  +E   LF EM        N VT+  ++        ++  +  F++M E   ++   
Sbjct: 279 YGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSI 338

Query: 240 --WTAMLMGYTHSGRMREASEFFDAMPVKP-VVACNEMIMGFGFDGDVDRAKAVFEKMRE 296
             +  M+  Y  SG ++EA  F  +MP++P V+    ++ G    GD+   +   +++ E
Sbjct: 339 QHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIE 398

Query: 297 RD---DGTWSAMIKVYERKGFELEALGLFARMQREG 329
            D    G +  +  VY + G  +E   +   M+ +G
Sbjct: 399 LDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKG 434



 Score = 80.1 bits (196), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 119/286 (41%), Gaps = 50/286 (17%)

Query: 173 KDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVM 232
           KD    T+++  Y   G L  A+ +FD+   +++  W ++V+ YA+   +D ARKLF+ M
Sbjct: 95  KDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEM 154

Query: 233 PERNEVSWTAMLMGYTHSGRMREASEFFDAM----PVKPVVACNEMIMG----------- 277
           PERN +SW+ ++ GY   G+ +EA + F  M    P +  V  NE  M            
Sbjct: 155 PERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGA 214

Query: 278 -----------------------------FGFDGDVDRAKAVFEKM-RERDDGTWSAMIK 307
                                        +   G ++RAK VF  +  ++D   +SAMI 
Sbjct: 215 LEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMIC 274

Query: 308 VYERKGFELEALGLFARM-QREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEF- 365
                G   E   LF+ M   +    N                 + G+  + +++  EF 
Sbjct: 275 CLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKS-YFKMMIEEFG 333

Query: 366 -DQDLYVASALITMYVKCGDLVRAKWIFNRYPLK-DVVMWNSMITG 409
               +     ++ +Y + G +  A+      P++ DV++W S+++G
Sbjct: 334 ITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSG 379



 Score = 73.9 bits (180), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 92/194 (47%), Gaps = 37/194 (19%)

Query: 353 GRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQ 412
           G++ HA+++    D+D +V ++L+ MY  CGDL  A+ +F+    KD+  WNS++  Y++
Sbjct: 81  GQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAK 140

Query: 413 HGLGE-------------------------------EALNVFRDMCL-----SGVPPDDI 436
            GL +                               EAL++FR+M L     + V P++ 
Sbjct: 141 AGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEF 200

Query: 437 SFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEK 496
           +   VLSAC   G +++G+ +   +  KY VE  I     ++D+  + G +  A  +   
Sbjct: 201 TMSTVLSACGRLGALEQGKWVHAYID-KYHVEIDIVLGTALIDMYAKCGSLERAKRVFNA 259

Query: 497 MPMEPDAIVWGSLL 510
           +  + D   + +++
Sbjct: 260 LGSKKDVKAYSAMI 273


>AT3G11460.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:3608250-3610121 FORWARD
           LENGTH=623
          Length = 623

 Score =  367 bits (941), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/541 (36%), Positives = 312/541 (57%), Gaps = 19/541 (3%)

Query: 178 VTNMIGGYCEEGRLEEARALFDEMPKRN--VVTWTTMVSGYARNRRVDVARKLFEVMPER 235
           +T +I  YC+ G + +AR +F+E P+ +   V +  ++SGY  N +V  A  +F  M E 
Sbjct: 91  LTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKET 150

Query: 236 NEVSWTAMLMG---------YTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDR 286
                +  ++G         Y   GR          +  + V   N  I  +   G V+ 
Sbjct: 151 GVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSE-VAVLNSFITMYMKCGSVEA 209

Query: 287 AKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXX 346
            + +F++M  +   TW+A+I  Y + G   + L L+ +M+  G   +             
Sbjct: 210 GRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAH 269

Query: 347 XXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSM 406
                 G +V   +  + F  +++V++A I+MY +CG+L +A+ +F+  P+K +V W +M
Sbjct: 270 LGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAM 329

Query: 407 ITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQ 466
           I  Y  HG+GE  L +F DM   G+ PD   F+ VLSACS+SG   +G E+F +MK +Y+
Sbjct: 330 IGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYK 389

Query: 467 VEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAV 526
           +EPG EHY+C+VDLLGRAG++++A+E +E MP+EPD  VWG+LLGAC+ H  +D+AE+A 
Sbjct: 390 LEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAF 449

Query: 527 EKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMF 586
            K+ + EP N G YVL+S++Y+     E +  +R  ++ R+  K PGYS++E + + H+F
Sbjct: 450 AKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLF 509

Query: 587 VGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDVEEEEKTHSLGYHSEKLAIA 646
           + GD + H +   + +ML+ L+  + +   + D          EE + +   HSE+LAIA
Sbjct: 510 LAGDRS-HEQTEEVHRMLDELETSVMELAGNMDCD------RGEEVSSTTREHSERLAIA 562

Query: 647 YGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIVRDANRFHHFKDGYCSCKDY 706
           +G+L    G  I V+KNLRVC DCH  +K ++K+  R+ +VRDA+RFH+FKDG CSCKDY
Sbjct: 563 FGILNSIPGTEILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHYFKDGVCSCKDY 622

Query: 707 W 707
           W
Sbjct: 623 W 623



 Score =  107 bits (267), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 141/344 (40%), Gaps = 61/344 (17%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFE------ 75
           T  IS Y + G + +ARKVF+E P   + +  +NA+++ Y    +   A  +F       
Sbjct: 92  TALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETG 151

Query: 76  ---------------TTPE------------------KNIVSWNGMVSGFVKNGMVAEAR 102
                          T PE                    +   N  ++ ++K G V   R
Sbjct: 152 VSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGR 211

Query: 103 RVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVED 162
           R+FD MPV+ +++W +++ GY Q G   +   L+ +M    V      L  +L       
Sbjct: 212 RLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLG 271

Query: 163 ARKLFDMMP--------VKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVS 214
           A+K+   +         V +V      I  Y   G L +ARA+FD MP +++V+WT M+ 
Sbjct: 272 AKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIG 331

Query: 215 GYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAM------- 263
            Y  +   ++   LF+ M +R    +   +  +L   +HSG   +  E F AM       
Sbjct: 332 CYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLE 391

Query: 264 PVKPVVACNEMIMGFGFDGDVDRAKAVFEKMR-ERDDGTWSAMI 306
           P     +C  ++   G  G +D A    E M  E D   W A++
Sbjct: 392 PGPEHYSC--LVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALL 433



 Score = 72.8 bits (177), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 70/316 (22%), Positives = 128/316 (40%), Gaps = 58/316 (18%)

Query: 302 WSAMIKVYERKGFELEALGLFARMQREGA---ALNFPXXXXXXXXXXXXXXXDHGRQVHA 358
           W+  ++    +    E++ L+  M R G+   A +FP                 G+Q+H 
Sbjct: 21  WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVS---GQQLHC 77

Query: 359 RLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKD--VVMWNSMITGYSQHGLG 416
            + +   + + +V +ALI+MY KCG +  A+ +F   P      V +N++I+GY+ +   
Sbjct: 78  HVTKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKV 137

Query: 417 EEALNVFRDMCLSGVPPDDISFIGVLSACSY----------------------------- 447
            +A  +FR M  +GV  D ++ +G++  C+                              
Sbjct: 138 TDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSF 197

Query: 448 ------SGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPME- 500
                  G V+ GR +F+ M  K     G+  +  ++    + G   D +E+ E+M    
Sbjct: 198 ITMYMKCGSVEAGRRLFDEMPVK-----GLITWNAVISGYSQNGLAYDVLELYEQMKSSG 252

Query: 501 --PDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSH----MYASKGRWE 554
             PD     S+L +C  H+        V KL  +E     P V +S+    MYA  G   
Sbjct: 253 VCPDPFTLVSVLSSC-AHLGAKKIGHEVGKL--VESNGFVPNVFVSNASISMYARCGNLA 309

Query: 555 DVEVVREKIKTRSVIK 570
               V + +  +S++ 
Sbjct: 310 KARAVFDIMPVKSLVS 325


>AT4G35130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:16721084-16723498 REVERSE
           LENGTH=804
          Length = 804

 Score =  365 bits (936), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 216/649 (33%), Positives = 341/649 (52%), Gaps = 40/649 (6%)

Query: 86  NGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM------ 139
           N ++S ++K G   +A +VF+ MP R++VSW SM+ GY+  G+   +  LF  M      
Sbjct: 169 NSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFK 228

Query: 140 PEKNVVSWTVMLGGLL-----KDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEA 194
           P++   S    LG        K  +      +   +   DV+ +T+++  Y + G +  A
Sbjct: 229 PDR--FSTMSALGACSHVYSPKMGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYA 286

Query: 195 RALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVS-----------WTAM 243
             +F+ M +RN+V W  M+  YARN RV  A   F+ M E+N +             +A+
Sbjct: 287 ERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPASAI 346

Query: 244 LMGYT-HSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTW 302
           L G T H   MR    F   M ++       +I  +G  G +  A+ +F++M E++  +W
Sbjct: 347 LEGRTIHGYAMRRG--FLPHMVLETA-----LIDMYGECGQLKSAEVIFDRMAEKNVISW 399

Query: 303 SAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVR 362
           +++I  Y + G    AL LF  +       +                   GR++HA +V+
Sbjct: 400 NSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVK 459

Query: 363 SEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNV 422
           S +  +  + ++L+ MY  CGDL  A+  FN   LKDVV WNS+I  Y+ HG G  ++ +
Sbjct: 460 SRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMAYAVHGFGRISVWL 519

Query: 423 FRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLG 482
           F +M  S V P+  +F  +L+ACS SG V EG E FESMK +Y ++PGIEHY CM+DL+G
Sbjct: 520 FSEMIASRVNPNKSTFASLLAACSISGMVDEGWEYFESMKREYGIDPGIEHYGCMLDLIG 579

Query: 483 RAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVL 542
           R G  + A   +E+MP  P A +WGSLL A R H  + +AE A E++ ++E  N G YVL
Sbjct: 580 RTGNFSAAKRFLEEMPFVPTARIWGSLLNASRNHKDITIAEFAAEQIFKMEHDNTGCYVL 639

Query: 543 LSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMK 602
           L +MYA  GRWEDV  ++  ++++ + +    S +E + K+H+F  GD +         K
Sbjct: 640 LLNMYAEAGRWEDVNRIKLLMESKGISRTSSRSTVEAKGKSHVFTNGDRS----HVATNK 695

Query: 603 MLERLDGLLRDAGYSPDHSFVLHDVEEE----EKTHSLGYHSEKLAIAYGLLKVPEGMPI 658
           + E LD + R  G    +   +  +  E     +++S   HS +LA  +GL+    G  +
Sbjct: 696 IYEVLDVVSRMVGEEDIYVHCVSRLRPETLVKSRSNSPRRHSVRLATCFGLISTETGRRV 755

Query: 659 RVMKNLRVCGDCHSAIKLIAKVTGREIIVRDANRFHHFKDGYCSCKDYW 707
            V  N R+C  CH  ++  +++T REI+V D+  FHHF +G CSC +YW
Sbjct: 756 TVRNNTRICRKCHEFLEKASRLTRREIVVGDSKIFHHFSNGRCSCGNYW 804



 Score =  146 bits (368), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 120/463 (25%), Positives = 209/463 (45%), Gaps = 28/463 (6%)

Query: 74  FETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAE 133
           ++ T + N  +    + GF  + ++ +A ++FD M   +   W  M++G+   G   EA 
Sbjct: 56  YKVTKQVNDPALTRALRGFADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAV 115

Query: 134 RLFWRMPEKNVVSWTVMLGGLLKD----SRVEDARKLFDMMP----VKDVVAVTNMIGGY 185
           + + RM    V + T     ++K     S +E+ +K+  M+     V DV    ++I  Y
Sbjct: 116 QFYSRMVFAGVKADTFTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLY 175

Query: 186 CEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVM------PERNEVS 239
            + G   +A  +F+EMP+R++V+W +M+SGY        +  LF+ M      P+R   S
Sbjct: 176 MKLGCAWDAEKVFEEMPERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDR--FS 233

Query: 240 WTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFD-----GDVDRAKAVFEKM 294
             + L   +H    +   E         +   + M+M    D     G+V  A+ +F  M
Sbjct: 234 TMSALGACSHVYSPKMGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGM 293

Query: 295 RERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGR 354
            +R+   W+ MI  Y R G   +A   F +M  +                        GR
Sbjct: 294 IQRNIVAWNVMIGCYARNGRVTDAFLCFQKMSEQNG---LQPDVITSINLLPASAILEGR 350

Query: 355 QVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHG 414
            +H   +R  F   + + +ALI MY +CG L  A+ IF+R   K+V+ WNS+I  Y Q+G
Sbjct: 351 TIHGYAMRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNG 410

Query: 415 LGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESM-KCKYQVEPGIEH 473
               AL +F+++  S + PD  +   +L A + S  + EGREI   + K +Y     I +
Sbjct: 411 KNYSALELFQELWDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTIILN 470

Query: 474 YACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTH 516
              +V +    G + DA +    + ++ D + W S++ A   H
Sbjct: 471 --SLVHMYAMCGDLEDARKCFNHILLK-DVVSWNSIIMAYAVH 510



 Score =  114 bits (284), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 136/269 (50%), Gaps = 6/269 (2%)

Query: 270 ACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREG 329
           A    + GF     ++ A  +F++M + D   W+ MIK +   G  +EA+  ++RM   G
Sbjct: 66  ALTRALRGFADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAG 125

Query: 330 AALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAK 389
              +                 + G+++HA +++  F  D+YV ++LI++Y+K G    A+
Sbjct: 126 VKADTFTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAE 185

Query: 390 WIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSG 449
            +F   P +D+V WNSMI+GY   G G  +L +F++M   G  PD  S +  L ACS+  
Sbjct: 186 KVFEEMPERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVY 245

Query: 450 KVKEGREIFESMKCKYQVEPG-IEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGS 508
             K G+EI      + ++E G +     ++D+  + G+V+ A  I   M ++ + + W  
Sbjct: 246 SPKMGKEI-HCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGM-IQRNIVAWNV 303

Query: 509 LLGACRTHMKLDLAEVAVEKLAQ---LEP 534
           ++G    + ++  A +  +K+++   L+P
Sbjct: 304 MIGCYARNGRVTDAFLCFQKMSEQNGLQP 332



 Score =  108 bits (271), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 106/464 (22%), Positives = 191/464 (41%), Gaps = 65/464 (14%)

Query: 8   LRVCMVQVRFQCTSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQP 67
           +++  V   + C S   IS Y ++G   +A KVF+E P   R   SWN+M++ Y      
Sbjct: 157 IKLGFVSDVYVCNSL--ISLYMKLGCAWDAEKVFEEMP--ERDIVSWNSMISGYLALGDG 212

Query: 68  HQAVTLFET------TPEK-NIVSWNGMVSGFV--KNGMVAEARRVFDAMPVRNVVSWTS 118
             ++ LF+        P++ + +S  G  S     K G       V   +   +V+  TS
Sbjct: 213 FSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSRIETGDVMVMTS 272

Query: 119 MVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVK----- 173
           ++  Y + G V  AER+F  M ++N+V+W VM+G   ++ RV DA   F  M  +     
Sbjct: 273 ILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQKMSEQNGLQP 332

Query: 174 DVVAVTN-------------------------------MIGGYCEEGRLEEARALFDEMP 202
           DV+   N                               +I  Y E G+L+ A  +FD M 
Sbjct: 333 DVITSINLLPASAILEGRTIHGYAMRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMA 392

Query: 203 KRNVVTWTTMVSGYARNRRVDVARKLFE------VMPERNEVSWTAMLMGYTHSGRMREA 256
           ++NV++W ++++ Y +N +   A +LF+      ++P+   ++  ++L  Y  S  + E 
Sbjct: 393 EKNVISWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIA--SILPAYAESLSLSEG 450

Query: 257 SEFFDAMPVKP-----VVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYER 311
            E   A  VK       +  N ++  +   GD++ A+  F  +  +D  +W+++I  Y  
Sbjct: 451 RE-IHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMAYAV 509

Query: 312 KGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSE-FDQDLY 370
            GF   ++ LF+ M       N                 D G +    + R    D  + 
Sbjct: 510 HGFGRISVWLFSEMIASRVNPNKSTFASLLAACSISGMVDEGWEYFESMKREYGIDPGIE 569

Query: 371 VASALITMYVKCGDLVRAKWIFNRYPLKDVV-MWNSMITGYSQH 413
               ++ +  + G+   AK      P      +W S++     H
Sbjct: 570 HYGCMLDLIGRTGNFSAAKRFLEEMPFVPTARIWGSLLNASRNH 613



 Score = 72.8 bits (177), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 125/290 (43%), Gaps = 25/290 (8%)

Query: 45  PHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRV 104
           PH+   T    A++  Y +  Q   A  +F+   EKN++SWN +++ +V+NG    A  +
Sbjct: 363 PHMVLET----ALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALEL 418

Query: 105 F----DAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLK---- 156
           F    D+  V +  +  S++  Y +  ++ E   +   + +    S T++L  L+     
Sbjct: 419 FQELWDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTIILNSLVHMYAM 478

Query: 157 DSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKR----NVVTWTTM 212
              +EDARK F+ + +KDVV+  ++I  Y   G    +  LF EM       N  T+ ++
Sbjct: 479 CGDLEDARKCFNHILLKDVVSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTFASL 538

Query: 213 VSGYARNRRVDVARKLFEVMPERNEVS-----WTAMLMGYTHSGRMREASEFFDAMPVKP 267
           ++  + +  VD   + FE M     +      +  ML     +G    A  F + MP  P
Sbjct: 539 LAACSISGMVDEGWEYFESMKREYGIDPGIEHYGCMLDLIGRTGNFSAAKRFLEEMPFVP 598

Query: 268 VVAC-NEMIMGFGFDGDVDRAKAVFE---KMRERDDGTWSAMIKVYERKG 313
                  ++       D+  A+   E   KM   + G +  ++ +Y   G
Sbjct: 599 TARIWGSLLNASRNHKDITIAEFAAEQIFKMEHDNTGCYVLLLNMYAEAG 648


>AT2G02980.1 | Symbols: OTP85 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:868468-870279 FORWARD
           LENGTH=603
          Length = 603

 Score =  364 bits (935), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/550 (36%), Positives = 312/550 (56%), Gaps = 17/550 (3%)

Query: 172 VKDVVAVTNMIGGYCEEGRLEE----ARALFDEMPKRNVVTWTTMVSGYAR-NRRVDVAR 226
           ++DV  V  +I  +C E   E     AR LF+ M + ++V + +M  GY+R    ++V  
Sbjct: 57  IEDVSFVAKLIN-FCTESPTESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFS 115

Query: 227 KLFEVMPE---RNEVSWTAMLMGYTHSGRMREASEFFDAMPVK-----PVVACNEMIMGF 278
              E++ +    +  ++ ++L     +  + E  +    + +K      V  C  +I  +
Sbjct: 116 LFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQL-HCLSMKLGLDDNVYVCPTLINMY 174

Query: 279 GFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXX 338
               DVD A+ VF+++ E     ++AMI  Y R+    EAL LF  MQ +    N     
Sbjct: 175 TECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLL 234

Query: 339 XXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLK 398
                       D G+ +H    +  F + + V +ALI M+ KCG L  A  IF +   K
Sbjct: 235 SVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYK 294

Query: 399 DVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIF 458
           D   W++MI  Y+ HG  E+++ +F  M    V PD+I+F+G+L+ACS++G+V+EGR+ F
Sbjct: 295 DTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYF 354

Query: 459 ESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMK 518
             M  K+ + P I+HY  MVDLL RAG + DA E ++K+P+ P  ++W  LL AC +H  
Sbjct: 355 SQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNN 414

Query: 519 LDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIE 578
           LDLAE   E++ +L+  + G YV+LS++YA   +WE V+ +R+ +K R  +K+PG S IE
Sbjct: 415 LDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIE 474

Query: 579 VEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLH-DVEEEEKTHSLG 637
           V    H F  GD         + + L+ +   L+ +GY PD S V+H ++ ++EK  +L 
Sbjct: 475 VNNVVHEFFSGD-GVKSATTKLHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLR 533

Query: 638 YHSEKLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIVRDANRFHHFK 697
           YHSEKLAI +GLL  P G  IRV+KNLRVC DCH+A KLI+ + GR++++RD  RFHHF+
Sbjct: 534 YHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFE 593

Query: 698 DGYCSCKDYW 707
           DG CSC D+W
Sbjct: 594 DGKCSCGDFW 603



 Score = 94.0 bits (232), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 149/336 (44%), Gaps = 26/336 (7%)

Query: 101 ARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRV 160
           AR +F+AM   ++V + SM RGY +  N  E   LF  + E  ++        LLK   V
Sbjct: 82  ARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAV 141

Query: 161 ----EDARKLFDM---MPVKDVVAVT-NMIGGYCEEGRLEEARALFDEMPKRNVVTWTTM 212
               E+ R+L  +   + + D V V   +I  Y E   ++ AR +FD + +  VV +  M
Sbjct: 142 AKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAM 201

Query: 213 VSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRM-------REASEFFD 261
           ++GYAR  R + A  LF  M  +    NE++  ++L      G +       + A +   
Sbjct: 202 ITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSF 261

Query: 262 AMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGL 321
              VK   A  +M   F   G +D A ++FEKMR +D   WSAMI  Y   G   +++ +
Sbjct: 262 CKYVKVNTALIDM---FAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLM 318

Query: 322 FARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFD--QDLYVASALITMY 379
           F RM+ E    +                 + GR+  +++V S+F     +    +++ + 
Sbjct: 319 FERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMV-SKFGIVPSIKHYGSMVDLL 377

Query: 380 VKCGDLVRAKWIFNRYPLKDVVM-WNSMITGYSQHG 414
            + G+L  A    ++ P+    M W  ++   S H 
Sbjct: 378 SRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHN 413



 Score = 72.8 bits (177), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 58/277 (20%), Positives = 124/277 (44%), Gaps = 21/277 (7%)

Query: 56  AMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVR---- 111
            ++  Y +      A  +F+   E  +V +N M++G+ +     EA  +F  M  +    
Sbjct: 169 TLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKP 228

Query: 112 NVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSW----TVMLGGLLKDSRVEDARKLF 167
           N ++  S++      G+++  + +     + +   +    T ++    K   ++DA  +F
Sbjct: 229 NEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIF 288

Query: 168 DMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNV----VTWTTMVSGYARNRRVD 223
           + M  KD  A + MI  Y   G+ E++  +F+ M   NV    +T+  +++  +   RV+
Sbjct: 289 EKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVE 348

Query: 224 VARKLFEVMPERNEV-----SWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIM-G 277
             RK F  M  +  +      + +M+   + +G + +A EF D +P+ P      +++  
Sbjct: 349 EGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAA 408

Query: 278 FGFDGDVDRAKAVFEKMRERDD---GTWSAMIKVYER 311
                ++D A+ V E++ E DD   G +  +  +Y R
Sbjct: 409 CSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYAR 445



 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/262 (21%), Positives = 109/262 (41%), Gaps = 51/262 (19%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEK---- 80
           I+ Y     +++AR VFD    +      +NAM+  Y + ++P++A++LF     K    
Sbjct: 171 INMYTECEDVDSARCVFDRI--VEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKP 228

Query: 81  ------------------NIVSW-----------------NGMVSGFVKNGMVAEARRVF 105
                             ++  W                   ++  F K G + +A  +F
Sbjct: 229 NEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIF 288

Query: 106 DAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLK----DSRVE 161
           + M  ++  +W++M+  Y   G  E++  +F RM  +NV    +   GLL       RVE
Sbjct: 289 EKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVE 348

Query: 162 DARKLFDMMPVK-----DVVAVTNMIGGYCEEGRLEEARALFDEMP-KRNVVTWTTMVSG 215
           + RK F  M  K      +    +M+      G LE+A    D++P     + W  +++ 
Sbjct: 349 EGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAA 408

Query: 216 YARNRRVDVARKLFEVMPERNE 237
            + +  +D+A K+ E + E ++
Sbjct: 409 CSSHNNLDLAEKVSERIFELDD 430



 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 78/156 (50%), Gaps = 12/156 (7%)

Query: 21  STGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEK 80
           +T  I  +A+ G +++A  +F++  +  + T +W+AM+ AY    +  +++ +FE    +
Sbjct: 268 NTALIDMFAKCGSLDDAVSIFEKMRY--KDTQAWSAMIVAYANHGKAEKSMLMFERMRSE 325

Query: 81  NI----VSWNGMVSGFVKNGMVAEARRVFDAMP-----VRNVVSWTSMVRGYVQEGNVEE 131
           N+    +++ G+++     G V E R+ F  M      V ++  + SMV    + GN+E+
Sbjct: 326 NVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLED 385

Query: 132 AERLFWRMP-EKNVVSWTVMLGGLLKDSRVEDARKL 166
           A     ++P     + W ++L      + ++ A K+
Sbjct: 386 AYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKV 421



 Score = 53.1 bits (126), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 54/262 (20%), Positives = 110/262 (41%), Gaps = 23/262 (8%)

Query: 56  AMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNV-- 113
           A++  + +      AV++FE    K+  +W+ M+  +  +G   ++  +F+ M   NV  
Sbjct: 270 ALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQP 329

Query: 114 --VSWTSMVRGYVQEGNVEEAERLFWRMPEK-----NVVSWTVMLGGLLKDSRVEDARKL 166
             +++  ++      G VEE  + F +M  K     ++  +  M+  L +   +EDA + 
Sbjct: 330 DEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEF 389

Query: 167 FDMMPVKDVVAVTNMIGGYCEE-GRLEEARALFD---EMPKRNVVTWTTMVSGYARNRRV 222
            D +P+     +  ++   C     L+ A  + +   E+   +   +  + + YARN++ 
Sbjct: 390 IDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKW 449

Query: 223 DVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVV-----ACNEMIMG 277
           +    L +VM +R  V     + G +         EFF    VK        A +EM+  
Sbjct: 450 EYVDSLRKVMKDRKAVK----VPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKE 505

Query: 278 FGFDGDV-DRAKAVFEKMRERD 298
               G V D +  V   M +++
Sbjct: 506 LKLSGYVPDTSMVVHANMNDQE 527


>AT1G04840.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:1362867-1364962 REVERSE
           LENGTH=665
          Length = 665

 Score =  363 bits (931), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 204/619 (32%), Positives = 337/619 (54%), Gaps = 21/619 (3%)

Query: 102 RRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVE 161
           R V  +     +VS +S+++      + + +  +F    E+N      ++ GL +++R E
Sbjct: 55  RGVLSSRVAAQLVSCSSLLK------SPDYSLSIFRNSEERNPFVLNALIRGLTENARFE 108

Query: 162 DARKLFDMMPVKDV---------VAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTM 212
            + + F +M    V         V  +N   G+   GR   A  L + +   + V   ++
Sbjct: 109 SSVRHFILMLRLGVKPDRLTFPFVLKSNSKLGFRWLGRALHAATLKNFVDCDSFVR-LSL 167

Query: 213 VSGYARNRRVDVARKLFEVMPERNE----VSWTAMLMGYTHSGRMREASEFFDAMPVKPV 268
           V  YA+  ++  A ++FE  P+R +    + W  ++ GY  +  M  A+  F +MP +  
Sbjct: 168 VDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGYCRAKDMHMATTLFRSMPERNS 227

Query: 269 VACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQRE 328
            + + +I G+   G+++RAK +FE M E++  +W+ +I  + + G    A+  +  M  +
Sbjct: 228 GSWSTLIKGYVDSGELNRAKQLFELMPEKNVVSWTTLINGFSQTGDYETAISTYFEMLEK 287

Query: 329 GAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRA 388
           G   N                   G ++H  ++ +    D  + +AL+ MY KCG+L  A
Sbjct: 288 GLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCGELDCA 347

Query: 389 KWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYS 448
             +F+    KD++ W +MI G++ HG   +A+  FR M  SG  PD++ F+ VL+AC  S
Sbjct: 348 ATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVLTACLNS 407

Query: 449 GKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGS 508
            +V  G   F+SM+  Y +EP ++HY  +VDLLGRAG++N+A E+VE MP+ PD   W +
Sbjct: 408 SEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDLLGRAGKLNEAHELVENMPINPDLTTWAA 467

Query: 509 LLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSV 568
           L  AC+ H     AE   + L +L+P+  G Y+ L   +ASKG  +DVE  R  ++ R  
Sbjct: 468 LYRACKAHKGYRRAESVSQNLLELDPELCGSYIFLDKTHASKGNIQDVEKRRLSLQKRIK 527

Query: 569 IKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDVE 628
            +  G+S+IE++ + + F  GD +    Q I +K L+ +  L    GY+P   + +HD+E
Sbjct: 528 ERSLGWSYIELDGQLNKFSAGDYSHKLTQEIGLK-LDEIISLAIQKGYNPGADWSIHDIE 586

Query: 629 EEEKTHSLGYHSEKLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIVR 688
           EEEK +  G HSEKLA+  G L+   G  IR++KNLR+CGDCHS +K ++K++ R+I++R
Sbjct: 587 EEEKENVTGIHSEKLALTLGFLRTAPGTTIRIIKNLRICGDCHSLMKYVSKISQRDILLR 646

Query: 689 DANRFHHFKDGYCSCKDYW 707
           DA +FHHFKDG CSC DYW
Sbjct: 647 DARQFHHFKDGRCSCGDYW 665



 Score =  133 bits (335), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 155/305 (50%), Gaps = 24/305 (7%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSS--WNAMVAAYFQAHQPHQAVTLFETTPEKNI 82
           +  YA+ GQ+++A +VF+E+P   +  S   WN ++  Y +A   H A TLF + PE+N 
Sbjct: 168 VDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGYCRAKDMHMATTLFRSMPERNS 227

Query: 83  VSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEK 142
            SW+ ++ G+V +G +  A+++F+ MP +NVVSWT+++ G+ Q G+ E A   ++ M EK
Sbjct: 228 GSWSTLIKGYVDSGELNRAKQLFELMPEKNVVSWTTLINGFSQTGDYETAISTYFEMLEK 287

Query: 143 N----------VVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLE 192
                      V+S     G L    R+     + D     D    T ++  Y + G L+
Sbjct: 288 GLKPNEYTIAAVLSACSKSGALGSGIRIHGY--ILDNGIKLDRAIGTALVDMYAKCGELD 345

Query: 193 EARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVM----PERNEVSWTAMLMGYT 248
            A  +F  M  +++++WT M+ G+A + R   A + F  M     + +EV + A+L    
Sbjct: 346 CAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVLTACL 405

Query: 249 HSGRMREASEFFDAM----PVKPVVACNEMIMG-FGFDGDVDRAKAVFEKMRERDD-GTW 302
           +S  +     FFD+M     ++P +    +++   G  G ++ A  + E M    D  TW
Sbjct: 406 NSSEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDLLGRAGKLNEAHELVENMPINPDLTTW 465

Query: 303 SAMIK 307
           +A+ +
Sbjct: 466 AALYR 470


>AT2G01510.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:230752-232506 REVERSE
           LENGTH=584
          Length = 584

 Score =  363 bits (931), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/541 (36%), Positives = 304/541 (56%), Gaps = 13/541 (2%)

Query: 178 VTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNR----RVDVARKLFEVMP 233
           +T ++      G +  AR +FDEM K  +  W T+  GY RN+     + + +K+ ++  
Sbjct: 46  LTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYVRNQLPFESLLLYKKMRDLGV 105

Query: 234 ERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVAC-----NEMIMGFGFDGDVDRAK 288
             +E ++  ++   +  G          A  VK    C      E++M +   G++  A+
Sbjct: 106 RPDEFTYPFVVKAISQLGDF-SCGFALHAHVVKYGFGCLGIVATELVMMYMKFGELSSAE 164

Query: 289 AVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXX 348
            +FE M+ +D   W+A + V  + G    AL  F +M  +    +               
Sbjct: 165 FLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLG 224

Query: 349 XXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMIT 408
             + G +++ R  + E D ++ V +A + M++KCG+   A+ +F     ++VV W++MI 
Sbjct: 225 SLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIV 284

Query: 409 GYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESM--KCKYQ 466
           GY+ +G   EAL +F  M   G+ P+ ++F+GVLSACS++G V EG+  F  M       
Sbjct: 285 GYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKN 344

Query: 467 VEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAV 526
           +EP  EHYACMVDLLGR+G + +A E ++KMP+EPD  +WG+LLGAC  H  + L +   
Sbjct: 345 LEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQKVA 404

Query: 527 EKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMF 586
           + L +  P     +VLLS++YA+ G+W+ V+ VR K++     K+  YS +E E K H F
Sbjct: 405 DVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEGKIHFF 464

Query: 587 VGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDVEEEEKTHSLGYHSEKLAIA 646
             GD + HP+   I + L+ +   +R  GY PD   V HDVE EEK  SL +HSEKLAIA
Sbjct: 465 NRGDKS-HPQSKAIYEKLDEILKKIRKMGYVPDTCSVFHDVEMEEKECSLSHHSEKLAIA 523

Query: 647 YGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIVRDANRFHHFKDGYCSCKDY 706
           +GL+K   G PIRVMKNLR C DCH+  K ++ +T  EII+RD NRFHHF++G CSCK++
Sbjct: 524 FGLIKGRPGHPIRVMKNLRTCDDCHAFSKFVSSLTSTEIIMRDKNRFHHFRNGVCSCKEF 583

Query: 707 W 707
           W
Sbjct: 584 W 584



 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 150/339 (44%), Gaps = 69/339 (20%)

Query: 31  IGQIENARKVFDE--TPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFE------------T 76
           IG +  AR+VFDE   P I      WN +   Y +   P +++ L++            T
Sbjct: 56  IGDMCYARQVFDEMHKPRIFL----WNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFT 111

Query: 77  TP------------------EKNIVSWN----GMVSG-----FVKNGMVAEARRVFDAMP 109
            P                    ++V +     G+V+      ++K G ++ A  +F++M 
Sbjct: 112 YPFVVKAISQLGDFSCGFALHAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQ 171

Query: 110 VRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVV--SWTV--MLGGLLKDSRVEDARK 165
           V+++V+W + +   VQ GN   A   F +M    V   S+TV  ML    +   +E   +
Sbjct: 172 VKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEE 231

Query: 166 LFDMMPVKDV---VAVTNM-IGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRR 221
           ++D    +++   + V N  +  + + G  E AR LF+EM +RNVV+W+TM+ GYA N  
Sbjct: 232 IYDRARKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGD 291

Query: 222 VDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAM---------PVKPV 268
              A  LF  M       N V++  +L   +H+G + E   +F  M         P K  
Sbjct: 292 SREALTLFTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEH 351

Query: 269 VACNEMIMGFGFDGDVDRAKAVFEKMR-ERDDGTWSAMI 306
            AC  M+   G  G ++ A    +KM  E D G W A++
Sbjct: 352 YAC--MVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGALL 388



 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 91/404 (22%), Positives = 168/404 (41%), Gaps = 41/404 (10%)

Query: 69  QAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGN 128
            A+ L     EKN +    ++   V  G +  AR+VFD M    +  W ++ +GYV+   
Sbjct: 31  HAIVLRTGFSEKNSL-LTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYVRNQL 89

Query: 129 VEEAERLFWRM------PEKNVVSWTVMLGGLLKDSRVEDA------RKLFDMMPVKDVV 176
             E+  L+ +M      P++    + V     L D     A      +  F  + +    
Sbjct: 90  PFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLGI---- 145

Query: 177 AVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMP--- 233
             T ++  Y + G L  A  LF+ M  +++V W   ++   +     +A + F  M    
Sbjct: 146 VATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADA 205

Query: 234 -ERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFD-----GDVDRA 287
            + +  +  +ML      G +    E +D    K  + CN ++     D     G+ + A
Sbjct: 206 VQFDSFTVVSMLSACGQLGSLEIGEEIYDR-ARKEEIDCNIIVENARLDMHLKCGNTEAA 264

Query: 288 KAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXX 347
           + +FE+M++R+  +WS MI  Y   G   EAL LF  MQ EG   N+             
Sbjct: 265 RVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHA 324

Query: 348 XXXDHGRQVHARLVRSEFDQDLYVA----SALITMYVKCGDLVRAKWIFNRYPLK-DVVM 402
              + G++  + +V+S  D++L       + ++ +  + G L  A     + P++ D  +
Sbjct: 325 GLVNEGKRYFSLMVQSN-DKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGI 383

Query: 403 WNSMITGYSQHG---LGEEALNVFRDMCLSGVPPDDISFIGVLS 443
           W +++   + H    LG++  +V     L    PD  S+  +LS
Sbjct: 384 WGALLGACAVHRDMILGQKVADV-----LVETAPDIGSYHVLLS 422



 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 80/169 (47%), Gaps = 20/169 (11%)

Query: 354 RQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQH 413
           +++HA ++R+ F +   + + L+   V  GD+  A+ +F+      + +WN++  GY ++
Sbjct: 28  KKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYVRN 87

Query: 414 GLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEH 473
            L  E+L +++ M   GV PD+ ++  V+ A S  G             C + +   +  
Sbjct: 88  QLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLG----------DFSCGFALHAHVVK 137

Query: 474 Y--AC-------MVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGAC 513
           Y   C       +V +  + G+++ A  + E M ++ D + W + L  C
Sbjct: 138 YGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVK-DLVAWNAFLAVC 185



 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 98/234 (41%), Gaps = 32/234 (13%)

Query: 9   RVCMVQVRFQC-TSTGAISRYARIGQIENARKVFDET--PHIHRTTSSWNAMVAAYFQAH 65
           ++C   V+F   T    +S   ++G +E   +++D      I       NA +  + +  
Sbjct: 200 KMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCG 259

Query: 66  QPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVR----NVVSWTSMVR 121
               A  LFE   ++N+VSW+ M+ G+  NG   EA  +F  M       N V++  ++ 
Sbjct: 260 NTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLS 319

Query: 122 GYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNM 181
                G V E +R F  M + N             D  +E  ++ +  M         ++
Sbjct: 320 ACSHAGLVNEGKRYFSLMVQSN-------------DKNLEPRKEHYACM--------VDL 358

Query: 182 IGGYCEEGRLEEARALFDEMP-KRNVVTWTTMVSGYARNRRVDVARKLFEVMPE 234
           +G     G LEEA     +MP + +   W  ++   A +R + + +K+ +V+ E
Sbjct: 359 LG---RSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQKVADVLVE 409


>AT5G40410.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:16171385-16173211 FORWARD
           LENGTH=608
          Length = 608

 Score =  360 bits (924), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 190/542 (35%), Positives = 302/542 (55%), Gaps = 18/542 (3%)

Query: 180 NMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPER---- 235
            ++G Y   G    A  LFDEMP+R++V+W +++SGY+    +    K FEV+       
Sbjct: 71  QLVGCYLRLGHDVCAEKLFDEMPERDLVSWNSLISGYSGRGYLG---KCFEVLSRMMISE 127

Query: 236 -----NEVSWTAMLMGYTHSGRMREASEFFDAM----PVKPVVACNEMIMGFGFDGDVDR 286
                NEV++ +M+    + G   E       +     ++ V   N  I  +G  GD+  
Sbjct: 128 VGFRPNEVTFLSMISACVYGGSKEEGRCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTS 187

Query: 287 AKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXX 346
           +  +FE +  ++  +W+ MI ++ + G   + L  F   +R G   +             
Sbjct: 188 SCKLFEDLSIKNLVSWNTMIVIHLQNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRSCED 247

Query: 347 XXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSM 406
                  + +H  ++   F  +  + +AL+ +Y K G L  +  +F+     D + W +M
Sbjct: 248 MGVVRLAQGIHGLIMFGGFSGNKCITTALLDLYSKLGRLEDSSTVFHEITSPDSMAWTAM 307

Query: 407 ITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQ 466
           +  Y+ HG G +A+  F  M   G+ PD ++F  +L+ACS+SG V+EG+  FE+M  +Y+
Sbjct: 308 LAAYATHGFGRDAIKHFELMVHYGISPDHVTFTHLLNACSHSGLVEEGKHYFETMSKRYR 367

Query: 467 VEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAV 526
           ++P ++HY+CMVDLLGR+G + DA  ++++MPMEP + VWG+LLGACR +    L   A 
Sbjct: 368 IDPRLDHYSCMVDLLGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAA 427

Query: 527 EKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMF 586
           E+L +LEP++   YV+LS++Y++ G W+D   +R  +K + +++  G S+IE   K H F
Sbjct: 428 ERLFELEPRDGRNYVMLSNIYSASGLWKDASRIRNLMKQKGLVRASGCSYIEHGNKIHKF 487

Query: 587 VGGDNNCHPEQPIIMKMLERLDGLLR-DAGYSPDHSFVLHDVEEEEKTHSLGYHSEKLAI 645
           V GD + HPE   I K L+ +   ++ + GY     FVLHDV E+ K   +  HSEK+A+
Sbjct: 488 VVGDWS-HPESEKIQKKLKEIRKKMKSEMGYKSKTEFVLHDVGEDVKEEMINQHSEKIAM 546

Query: 646 AYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIVRDANRFHHFKDGYCSCKD 705
           A+GLL V    PI + KNLR+CGDCH   K I+ +  R II+RD+ RFHHF DG CSC D
Sbjct: 547 AFGLLVVSPMEPIIIRKNLRICGDCHETAKAISLIEKRRIIIRDSKRFHHFLDGSCSCSD 606

Query: 706 YW 707
           YW
Sbjct: 607 YW 608



 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 112/229 (48%), Gaps = 19/229 (8%)

Query: 354 RQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQH 413
           R +H ++V+S   +  ++   L+  Y++ G  V A+ +F+  P +D+V WNS+I+GYS  
Sbjct: 51  RLLHCKVVKSVSYRHGFIGDQLVGCYLRLGHDVCAEKLFDEMPERDLVSWNSLISGYSGR 110

Query: 414 GLGEEALNVFRDMCLS--GVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGI 471
           G   +   V   M +S  G  P++++F+ ++SAC Y G  +EGR I   +  K+ V   +
Sbjct: 111 GYLGKCFEVLSRMMISEVGFRPNEVTFLSMISACVYGGSKEEGRCI-HGLVMKFGVLEEV 169

Query: 472 EHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAV----- 526
           +     ++  G+ G +  + ++ E + ++ + + W +++     H++  LAE  +     
Sbjct: 170 KVVNAFINWYGKTGDLTSSCKLFEDLSIK-NLVSWNTMI---VIHLQNGLAEKGLAYFNM 225

Query: 527 EKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYS 575
            +    EP  A    +L          ED+ VVR       +I   G+S
Sbjct: 226 SRRVGHEPDQATFLAVLR-------SCEDMGVVRLAQGIHGLIMFGGFS 267



 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/338 (23%), Positives = 138/338 (40%), Gaps = 64/338 (18%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNV- 113
           + +V  Y +      A  LF+  PE+++VSWN ++SG+   G + +   V   M +  V 
Sbjct: 70  DQLVGCYLRLGHDVCAEKLFDEMPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVG 129

Query: 114 -----VSWTSMVRGYVQEGNVEEAERL------FWRMPEKNVVSWTVMLGGLLKDSRVED 162
                V++ SM+   V  G+ EE   +      F  + E  VV+  +   G  K   +  
Sbjct: 130 FRPNEVTFLSMISACVYGGSKEEGRCIHGLVMKFGVLEEVKVVNAFINWYG--KTGDLTS 187

Query: 163 ARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKR------------------ 204
           + KLF+ + +K++V+   MI  + + G  E+  A F+ M +R                  
Sbjct: 188 SCKLFEDLSIKNLVSWNTMIVIHLQNGLAEKGLAYFN-MSRRVGHEPDQATFLAVLRSCE 246

Query: 205 ----------------------NVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTA 242
                                 N    T ++  Y++  R++ +  +F  +   + ++WTA
Sbjct: 247 DMGVVRLAQGIHGLIMFGGFSGNKCITTALLDLYSKLGRLEDSSTVFHEITSPDSMAWTA 306

Query: 243 MLMGYTHSGRMREASEFFDAM---PVKP-VVACNEMIMGFGFDGDVDRAKAVFEKM--RE 296
           ML  Y   G  R+A + F+ M    + P  V    ++      G V+  K  FE M  R 
Sbjct: 307 MLAAYATHGFGRDAIKHFELMVHYGISPDHVTFTHLLNACSHSGLVEEGKHYFETMSKRY 366

Query: 297 RDD---GTWSAMIKVYERKGFELEALGLFARMQREGAA 331
           R D     +S M+ +  R G   +A GL   M  E ++
Sbjct: 367 RIDPRLDHYSCMVDLLGRSGLLQDAYGLIKEMPMEPSS 404



 Score = 66.6 bits (161), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 114/269 (42%), Gaps = 47/269 (17%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVR--- 111
           NA +  Y +      +  LFE    KN+VSWN M+   ++NG+  +    F+ M  R   
Sbjct: 173 NAFINWYGKTGDLTSSCKLFEDLSIKNLVSWNTMIVIHLQNGLAEKGLAYFN-MSRRVGH 231

Query: 112 --NVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDM 169
             +  ++ +++R     G V  A+           +   +M GG   +  +  A  L D+
Sbjct: 232 EPDQATFLAVLRSCEDMGVVRLAQG----------IHGLIMFGGFSGNKCITTA--LLDL 279

Query: 170 MPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLF 229
                          Y + GRLE++  +F E+   + + WT M++ YA +     A K F
Sbjct: 280 ---------------YSKLGRLEDSSTVFHEITSPDSMAWTAMLAAYATHGFGRDAIKHF 324

Query: 230 EVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAM-------PVKPVVACNEMIMGF 278
           E+M       + V++T +L   +HSG + E   +F+ M       P     +C  M+   
Sbjct: 325 ELMVHYGISPDHVTFTHLLNACSHSGLVEEGKHYFETMSKRYRIDPRLDHYSC--MVDLL 382

Query: 279 GFDGDVDRAKAVFEKM-RERDDGTWSAMI 306
           G  G +  A  + ++M  E   G W A++
Sbjct: 383 GRSGLLQDAYGLIKEMPMEPSSGVWGALL 411



 Score = 66.2 bits (160), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 89/429 (20%), Positives = 165/429 (38%), Gaps = 62/429 (14%)

Query: 103 RVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVED 162
           +V  ++  R+      +V  Y++ G+   AE+LF  MPE+++VSW  ++ G      +  
Sbjct: 56  KVVKSVSYRHGFIGDQLVGCYLRLGHDVCAEKLFDEMPERDLVSWNSLISGYSGRGYLGK 115

Query: 163 ARKLFDMMPVKDV------VAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSG- 215
             ++   M + +V      V   +MI      G  EE R +   + K  V+    +V+  
Sbjct: 116 CFEVLSRMMISEVGFRPNEVTFLSMISACVYGGSKEEGRCIHGLVMKFGVLEEVKVVNAF 175

Query: 216 ---YARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFD----------- 261
              Y +   +  + KLFE +  +N VSW  M++ +  +G   +   +F+           
Sbjct: 176 INWYGKTGDLTSSCKLFEDLSIKNLVSWNTMIVIHLQNGLAEKGLAYFNMSRRVGHEPDQ 235

Query: 262 AMPVKPVVACNEM------------IMGFGFDGD----------------VDRAKAVFEK 293
           A  +  + +C +M            IM  GF G+                ++ +  VF +
Sbjct: 236 ATFLAVLRSCEDMGVVRLAQGIHGLIMFGGFSGNKCITTALLDLYSKLGRLEDSSTVFHE 295

Query: 294 MRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHG 353
           +   D   W+AM+  Y   GF  +A+  F  M   G + +                 + G
Sbjct: 296 ITSPDSMAWTAMLAAYATHGFGRDAIKHFELMVHYGISPDHVTFTHLLNACSHSGLVEEG 355

Query: 354 RQVHARLV-RSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLK-DVVMWNSMITG-- 409
           +     +  R   D  L   S ++ +  + G L  A  +    P++    +W +++    
Sbjct: 356 KHYFETMSKRYRIDPRLDHYSCMVDLLGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACR 415

Query: 410 -YSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVE 468
            Y    LG +A     ++     P D  +++ + +  S SG  K+   I   MK K  V 
Sbjct: 416 VYKDTQLGTKAAERLFEL----EPRDGRNYVMLSNIYSASGLWKDASRIRNLMKQKGLVR 471

Query: 469 PG----IEH 473
                 IEH
Sbjct: 472 ASGCSYIEH 480


>AT1G32415.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:11695611-11697896 FORWARD LENGTH=761
          Length = 761

 Score =  358 bits (918), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 211/638 (33%), Positives = 335/638 (52%), Gaps = 58/638 (9%)

Query: 20  TSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPE 79
           T    ++ Y +  ++  A  +F E P   +   SW  M+ A     +   AV LF+  PE
Sbjct: 110 TCNAMLTGYVKCRRMNEAWTLFREMP---KNVVSWTVMLTALCDDGRSEDAVELFDEMPE 166

Query: 80  KNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM 139
           +N+VSWN +V+G ++NG + +A++VFDAMP R+VVSW +M++GY++   +EEA+ LF  M
Sbjct: 167 RNVVSWNTLVTGLIRNGDMEKAKQVFDAMPSRDVVSWNAMIKGYIENDGMEEAKLLFGDM 226

Query: 140 PEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFD 199
            EKNVV+WT M+ G  +   V +A +LF  MP +++V+ T MI G+       EA  LF 
Sbjct: 227 SEKNVVTWTSMVYGYCRYGDVREAYRLFCEMPERNIVSWTAMISGFAWNELYREALMLFL 286

Query: 200 EMPK----------------------------------RNVVT--WTT----------MV 213
           EM K                                    V++  W T          +V
Sbjct: 287 EMKKDVDAVSPNGETLISLAYACGGLGVEFRRLGEQLHAQVISNGWETVDHDGRLAKSLV 346

Query: 214 SGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAM-PVKPVVACN 272
             YA +  +  A+ L       +  S   ++  Y  +G +  A   F+ +  +   V+  
Sbjct: 347 HMYASSGLIASAQSLLN--ESFDLQSCNIIINRYLKNGDLERAETLFERVKSLHDKVSWT 404

Query: 273 EMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAAL 332
            MI G+   GDV RA  +F+K+ ++D  TW+ MI    +     EA  L + M R G   
Sbjct: 405 SMIDGYLEAGDVSRAFGLFQKLHDKDGVTWTVMISGLVQNELFAEAASLLSDMVRCGLKP 464

Query: 333 NFPXXXXXXXXXXXXXXXDHGRQVHARLVRSE--FDQDLYVASALITMYVKCGDLVRAKW 390
                             D G+ +H  + ++   +D DL + ++L++MY KCG +  A  
Sbjct: 465 LNSTYSVLLSSAGATSNLDQGKHIHCVIAKTTACYDPDLILQNSLVSMYAKCGAIEDAYE 524

Query: 391 IFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGK 450
           IF +   KD V WNSMI G S HGL ++ALN+F++M  SG  P+ ++F+GVLSACS+SG 
Sbjct: 525 IFAKMVQKDTVSWNSMIMGLSHHGLADKALNLFKEMLDSGKKPNSVTFLGVLSACSHSGL 584

Query: 451 VKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLL 510
           +  G E+F++MK  Y ++PGI+HY  M+DLLGRAG++ +A E +  +P  PD  V+G+LL
Sbjct: 585 ITRGLELFKAMKETYSIQPGIDHYISMIDLLGRAGKLKEAEEFISALPFTPDHTVYGALL 644

Query: 511 GAC----RTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTR 566
           G C    R      +AE A  +L +L+P NA  +V L ++YA  GR +  + +R+++  +
Sbjct: 645 GLCGLNWRDKDAEGIAERAAMRLLELDPVNAPGHVALCNVYAGLGRHDMEKEMRKEMGIK 704

Query: 567 SVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKML 604
            V K PG SW+ V  +A++F+ GD +      +++ + 
Sbjct: 705 GVKKTPGCSWVVVNGRANVFLSGDKSASEAAQMVLPIF 742



 Score =  233 bits (594), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 164/517 (31%), Positives = 259/517 (50%), Gaps = 31/517 (5%)

Query: 25  ISRYARIGQIENARKVFDETPH---IHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKN 81
           I R    G + +AR + D+ P    I+R    W ++++ Y +     +A  LFE  PE+N
Sbjct: 49  ILRRLSEGGLVHARHLLDKIPQRGSINRVVY-WTSLLSKYAKTGYLDEARVLFEVMPERN 107

Query: 82  IVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPE 141
           IV+ N M++G+VK   + EA  +F  MP +NVVSWT M+     +G  E+A  LF  MPE
Sbjct: 108 IVTCNAMLTGYVKCRRMNEAWTLFREMP-KNVVSWTVMLTALCDDGRSEDAVELFDEMPE 166

Query: 142 KNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEM 201
           +NVVSW  ++ GL+++  +E A+++FD MP +DVV+   MI GY E   +EEA+ LF +M
Sbjct: 167 RNVVSWNTLVTGLIRNGDMEKAKQVFDAMPSRDVVSWNAMIKGYIENDGMEEAKLLFGDM 226

Query: 202 PKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFF- 260
            ++NVVTWT+MV GY R   V  A +LF  MPERN VSWTAM+ G+  +   REA   F 
Sbjct: 227 SEKNVVTWTSMVYGYCRYGDVREAYRLFCEMPERNIVSWTAMISGFAWNELYREALMLFL 286

Query: 261 ----DAMPVKP--------VVACNEMIMGFGFDGDVDRAKAVFEKMRERD-DGTWS-AMI 306
               D   V P          AC  + + F   G+   A+ +       D DG  + +++
Sbjct: 287 EMKKDVDAVSPNGETLISLAYACGGLGVEFRRLGEQLHAQVISNGWETVDHDGRLAKSLV 346

Query: 307 KVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFD 366
            +Y   G    A  L         + +                 +    +  R V+S  D
Sbjct: 347 HMYASSGLIASAQSLL------NESFDLQSCNIIINRYLKNGDLERAETLFER-VKSLHD 399

Query: 367 QDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDM 426
           +  +  +++I  Y++ GD+ RA  +F +   KD V W  MI+G  Q+ L  EA ++  DM
Sbjct: 400 KVSW--TSMIDGYLEAGDVSRAFGLFQKLHDKDGVTWTVMISGLVQNELFAEAASLLSDM 457

Query: 427 CLSGVPPDDISFIGVLSACSYSGKVKEGREIFESM-KCKYQVEPGIEHYACMVDLLGRAG 485
              G+ P + ++  +LS+   +  + +G+ I   + K     +P +     +V +  + G
Sbjct: 458 VRCGLKPLNSTYSVLLSSAGATSNLDQGKHIHCVIAKTTACYDPDLILQNSLVSMYAKCG 517

Query: 486 QVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLA 522
            + DA EI  KM ++ D + W S++     H   D A
Sbjct: 518 AIEDAYEIFAKM-VQKDTVSWNSMIMGLSHHGLADKA 553


>AT5G66520.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:26551879-26553741 FORWARD
           LENGTH=620
          Length = 620

 Score =  353 bits (907), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 194/554 (35%), Positives = 301/554 (54%), Gaps = 10/554 (1%)

Query: 163 ARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEM----PKRNVVTWTTMVSG--- 215
           A+ +FD     D      MI G+      E +  L+  M       N  T+ +++     
Sbjct: 68  AQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSN 127

Query: 216 -YARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEM 274
             A      +  ++ ++  E +  +  +++  Y  +G  + A   FD +P    V+ N +
Sbjct: 128 LSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSV 187

Query: 275 IMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNF 334
           I G+   G +D A  +F KM E++  +W+ MI  Y +     EAL LF  MQ      + 
Sbjct: 188 IKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDN 247

Query: 335 PXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNR 394
                           + G+ +H+ L ++    D  +   LI MY KCG++  A  +F  
Sbjct: 248 VSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKN 307

Query: 395 YPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEG 454
              K V  W ++I+GY+ HG G EA++ F +M   G+ P+ I+F  VL+ACSY+G V+EG
Sbjct: 308 IKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEG 367

Query: 455 REIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACR 514
           + IF SM+  Y ++P IEHY C+VDLLGRAG +++A   +++MP++P+A++WG+LL ACR
Sbjct: 368 KLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACR 427

Query: 515 THMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGY 574
            H  ++L E   E L  ++P + G YV  ++++A   +W+     R  +K + V K+PG 
Sbjct: 428 IHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGC 487

Query: 575 SWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHD-VEEEEKT 633
           S I +E   H F+ GD + HPE   I      +   L + GY P+   +L D V+++E+ 
Sbjct: 488 STISLEGTTHEFLAGDRS-HPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDERE 546

Query: 634 HSLGYHSEKLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIVRDANRF 693
             +  HSEKLAI YGL+K   G  IR+MKNLRVC DCH   KLI+K+  R+I++RD  RF
Sbjct: 547 AIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRF 606

Query: 694 HHFKDGYCSCKDYW 707
           HHF+DG CSC DYW
Sbjct: 607 HHFRDGKCSCGDYW 620



 Score =  112 bits (279), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 135/253 (53%), Gaps = 15/253 (5%)

Query: 58  VAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWT 117
           ++A+ +  Q H  +T  +   E ++ + N +++ +   G    A  +FD +P  + VSW 
Sbjct: 128 LSAFEETTQIHAQIT--KLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWN 185

Query: 118 SMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDV-- 175
           S+++GYV+ G ++ A  LF +M EKN +SWT M+ G ++    ++A +LF  M   DV  
Sbjct: 186 SVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEP 245

Query: 176 --VAVTNMIGGYCEEGRLEEARALFDEMPKRNV----VTWTTMVSGYARNRRVDVARKLF 229
             V++ N +    + G LE+ + +   + K  +    V    ++  YA+   ++ A ++F
Sbjct: 246 DNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVF 305

Query: 230 EVMPERNEVSWTAMLMGYTHSGRMREA-SEFFD--AMPVKP-VVACNEMIMGFGFDGDVD 285
           + + +++  +WTA++ GY + G  REA S+F +   M +KP V+    ++    + G V+
Sbjct: 306 KNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVE 365

Query: 286 RAKAVFEKMRERD 298
             K +F  M ERD
Sbjct: 366 EGKLIFYSM-ERD 377



 Score =  105 bits (262), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 152/370 (41%), Gaps = 52/370 (14%)

Query: 101 ARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM----PEKNVVSWTVMLGGLLK 156
           A+ VFD     +   W  M+RG+      E +  L+ RM       N  ++  +L     
Sbjct: 68  AQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSN 127

Query: 157 DSRVEDARKLFDMMPV----KDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTM 212
            S  E+  ++   +       DV AV ++I  Y   G  + A  LFD +P+ + V+W ++
Sbjct: 128 LSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSV 187

Query: 213 VSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMP---VKP-- 267
           + GY +  ++D+A  LF  M E+N +SWT M+ GY  +   +EA + F  M    V+P  
Sbjct: 188 IKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDN 247

Query: 268 ------VVACNEM----------------------IMG------FGFDGDVDRAKAVFEK 293
                 + AC ++                      ++G      +   G+++ A  VF+ 
Sbjct: 248 VSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKN 307

Query: 294 MRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHG 353
           ++++    W+A+I  Y   G   EA+  F  MQ+ G   N                 + G
Sbjct: 308 IKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEG 367

Query: 354 RQVHARLVRS-EFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLK-DVVMWNSMITGYS 411
           + +   + R       +     ++ +  + G L  AK      PLK + V+W +++    
Sbjct: 368 KLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACR 427

Query: 412 QHG---LGEE 418
            H    LGEE
Sbjct: 428 IHKNIELGEE 437



 Score =  105 bits (261), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/294 (27%), Positives = 137/294 (46%), Gaps = 27/294 (9%)

Query: 41  FDETPHIHRTTSSW---------NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSG 91
           F+ET  IH   +           N+++ +Y        A  LF+  PE + VSWN ++ G
Sbjct: 131 FEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKG 190

Query: 92  FVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV----VSW 147
           +VK G +  A  +F  M  +N +SWT+M+ GYVQ    +EA +LF  M   +V    VS 
Sbjct: 191 YVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSL 250

Query: 148 TVMLGGLLKDSRVEDARKLFDMMPVK----DVVAVTNMIGGYCEEGRLEEARALFDEMPK 203
              L    +   +E  + +   +       D V    +I  Y + G +EEA  +F  + K
Sbjct: 251 ANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKK 310

Query: 204 RNVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEF 259
           ++V  WT ++SGYA +     A   F  M +     N +++TA+L   +++G + E    
Sbjct: 311 KSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLI 370

Query: 260 FDAMP----VKPVVACNEMIMG-FGFDGDVDRAKAVFEKMRERDDGT-WSAMIK 307
           F +M     +KP +     I+   G  G +D AK   ++M  + +   W A++K
Sbjct: 371 FYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLK 424



 Score = 69.3 bits (168), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 8/187 (4%)

Query: 354 RQVHARLVRSEFDQDLYVASALITMYVKCGD---LVRAKWIFNRYPLKDVVMWNSMITGY 410
           +Q+HAR++++   QD Y  +  ++  +       L  A+ +F+ +   D  +WN MI G+
Sbjct: 31  KQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGF 90

Query: 411 SQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPG 470
           S     E +L +++ M  S  P +  +F  +L ACS     +E  +I   +  K   E  
Sbjct: 91  SCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQIT-KLGYEND 149

Query: 471 IEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLA 530
           +     +++     G    A  + +++P EPD + W S++       K+D+A     K+A
Sbjct: 150 VYAVNSLINSYAVTGNFKLAHLLFDRIP-EPDDVSWNSVIKGYVKAGKMDIALTLFRKMA 208

Query: 531 QLEPKNA 537
           +   KNA
Sbjct: 209 E---KNA 212


>AT3G61170.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:22638691-22641237 REVERSE
           LENGTH=783
          Length = 783

 Score =  352 bits (902), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 219/748 (29%), Positives = 345/748 (46%), Gaps = 155/748 (20%)

Query: 49  RTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAM 108
           RT    N ++    ++ +  +A  +F+  PE++  +WN M+  +  +  +++A ++F + 
Sbjct: 26  RTKLHSNLLLGDLSKSGRVDEARQMFDKMPERDEFTWNTMIVAYSNSRRLSDAEKLFRSN 85

Query: 109 PVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLK------------ 156
           PV+N +SW +++ GY + G+  EA  LFW M    +      LG +L+            
Sbjct: 86  PVKNTISWNALISGYCKSGSKVEAFNLFWEMQSDGIKPNEYTLGSVLRMCTSLVLLLRGE 145

Query: 157 ---------------------------DSRVEDARKLFDMMP-VKDVVAVTNMIGGYCEE 188
                                        R+ +A  LF+ M   K+ V  T+M+ GY + 
Sbjct: 146 QIHGHTIKTGFDLDVNVVNGLLAMYAQCKRISEAEYLFETMEGEKNNVTWTSMLTGYSQN 205

Query: 189 GRLEEARALFDEMP---------------------------------------KRNVVTW 209
           G   +A   F ++                                        K N+   
Sbjct: 206 GFAFKAIECFRDLRREGNQSNQYTFPSVLTACASVSACRVGVQVHCCIVKSGFKTNIYVQ 265

Query: 210 TTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFF--------- 260
           + ++  YA+ R ++ AR L E M   + VSW +M++G    G + EA   F         
Sbjct: 266 SALIDMYAKCREMESARALLEGMEVDDVVSWNSMIVGCVRQGLIGEALSMFGRMHERDMK 325

Query: 261 -DAMPVKPVVAC------------------------------NEMIMGFGFDGDVDRAKA 289
            D   +  ++ C                              N ++  +   G +D A  
Sbjct: 326 IDDFTIPSILNCFALSRTEMKIASSAHCLIVKTGYATYKLVNNALVDMYAKRGIMDSALK 385

Query: 290 VFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXX 349
           VFE M E+D  +W+A++      G   EAL LF  M+  G   +                
Sbjct: 386 VFEGMIEKDVISWTALVTGNTHNGSYDEALKLFCNMRVGGITPDKIVTASVLSASAELTL 445

Query: 350 XDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITG 409
            + G+QVH   ++S F   L V ++L+TMY KCG L  A  IFN   ++D++ W  +I G
Sbjct: 446 LEFGQQVHGNYIKSGFPSSLSVNNSLVTMYTKCGSLEDANVIFNSMEIRDLITWTCLIVG 505

Query: 410 YSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEP 469
           Y+++GL E+A                                   +  F+SM+  Y + P
Sbjct: 506 YAKNGLLEDA-----------------------------------QRYFDSMRTVYGITP 530

Query: 470 GIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKL 529
           G EHYACM+DL GR+G      +++ +M +EPDA VW ++L A R H  ++  E A + L
Sbjct: 531 GPEHYACMIDLFGRSGDFVKVEQLLHQMEVEPDATVWKAILAASRKHGNIENGERAAKTL 590

Query: 530 AQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGG 589
            +LEP NA PYV LS+MY++ GR ++   VR  +K+R++ K PG SW+E + K H F+  
Sbjct: 591 MELEPNNAVPYVQLSNMYSAAGRQDEAANVRRLMKSRNISKEPGCSWVEEKGKVHSFMSE 650

Query: 590 DNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDVEEEEKTHSLGYHSEKLAIAYGL 649
           D   HP    I   ++ +  L+++AGY  D SF LHD+++E K   L YHSEKLA+A+GL
Sbjct: 651 DRR-HPRMVEIYSKVDEMMLLIKEAGYFADMSFALHDLDKEGKELGLAYHSEKLAVAFGL 709

Query: 650 LKVPEGMPIRVMKNLRVCGDCHSAIKLI 677
           L VP G PIR++KNLRVCGDCHSA+KL+
Sbjct: 710 LVVPSGAPIRIIKNLRVCGDCHSAMKLL 737



 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 137/281 (48%), Gaps = 3/281 (1%)

Query: 234 ERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEK 293
           +R ++    +L   + SGR+ EA + FD MP +     N MI+ +     +  A+ +F  
Sbjct: 25  DRTKLHSNLLLGDLSKSGRVDEARQMFDKMPERDEFTWNTMIVAYSNSRRLSDAEKLFRS 84

Query: 294 MRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHG 353
              ++  +W+A+I  Y + G ++EA  LF  MQ +G   N                   G
Sbjct: 85  NPVKNTISWNALISGYCKSGSKVEAFNLFWEMQSDGIKPNEYTLGSVLRMCTSLVLLLRG 144

Query: 354 RQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYP-LKDVVMWNSMITGYSQ 412
            Q+H   +++ FD D+ V + L+ MY +C  +  A+++F      K+ V W SM+TGYSQ
Sbjct: 145 EQIHGHTIKTGFDLDVNVVNGLLAMYAQCKRISEAEYLFETMEGEKNNVTWTSMLTGYSQ 204

Query: 413 HGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIE 472
           +G   +A+  FRD+   G   +  +F  VL+AC+     + G ++   +  K   +  I 
Sbjct: 205 NGFAFKAIECFRDLRREGNQSNQYTFPSVLTACASVSACRVGVQVHCCI-VKSGFKTNIY 263

Query: 473 HYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGAC 513
             + ++D+  +  ++  A  ++E M ++ D + W S++  C
Sbjct: 264 VQSALIDMYAKCREMESARALLEGMEVD-DVVSWNSMIVGC 303



 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 121/263 (46%), Gaps = 29/263 (11%)

Query: 17  FQCTSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLF-- 74
           ++  +   +  YA+ G +++A KVF+    I +   SW A+V          +A+ LF  
Sbjct: 363 YKLVNNALVDMYAKRGIMDSALKVFE--GMIEKDVISWTALVTGNTHNGSYDEALKLFCN 420

Query: 75  ----ETTPEK----NIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQE 126
                 TP+K    +++S +  ++  ++ G       +    P    V+  S+V  Y + 
Sbjct: 421 MRVGGITPDKIVTASVLSASAELT-LLEFGQQVHGNYIKSGFPSSLSVN-NSLVTMYTKC 478

Query: 127 GNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTN------ 180
           G++E+A  +F  M  +++++WT ++ G  K+  +EDA++ FD M  + V  +T       
Sbjct: 479 GSLEDANVIFNSMEIRDLITWTCLIVGYAKNGLLEDAQRYFDSM--RTVYGITPGPEHYA 536

Query: 181 -MIGGYCEEGRLEEARALFDEMP-KRNVVTWTTMVSGYARNRRVD----VARKLFEVMPE 234
            MI  +   G   +   L  +M  + +   W  +++   ++  ++     A+ L E+ P 
Sbjct: 537 CMIDLFGRSGDFVKVEQLLHQMEVEPDATVWKAILAASRKHGNIENGERAAKTLMELEPN 596

Query: 235 RNEVSWTAMLMGYTHSGRMREAS 257
            N V +  +   Y+ +GR  EA+
Sbjct: 597 -NAVPYVQLSNMYSAAGRQDEAA 618


>AT5G50390.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr5:20520789-20522980 REVERSE
           LENGTH=701
          Length = 701

 Score =  350 bits (899), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 178/531 (33%), Positives = 306/531 (57%), Gaps = 13/531 (2%)

Query: 189 GRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAML 244
           G + +AR LFDE+P+RN+ ++ +++SG+        A +LF++M E        ++  ML
Sbjct: 172 GMIIDARRLFDEIPERNLYSYYSIISGFVNFGNYVEAFELFKMMWEELSDCETHTFAVML 231

Query: 245 -----MGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDD 299
                +G  + G+          +     V+C  +I  +   GD++ A+  FE M E+  
Sbjct: 232 RASAGLGSIYVGKQLHVCALKLGVVDNTFVSCG-LIDMYSKCGDIEDARCAFECMPEKTT 290

Query: 300 GTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHAR 359
             W+ +I  Y   G+  EAL L   M+  G +++                 +  +Q HA 
Sbjct: 291 VAWNNVIAGYALHGYSEEALCLLYDMRDSGVSIDQFTLSIMIRISTKLAKLELTKQAHAS 350

Query: 360 LVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEA 419
           L+R+ F+ ++   +AL+  Y K G +  A+++F++ P K+++ WN+++ GY+ HG G +A
Sbjct: 351 LIRNGFESEIVANTALVDFYSKWGRVDTARYVFDKLPRKNIISWNALMGGYANHGRGTDA 410

Query: 420 LNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVD 479
           + +F  M  + V P+ ++F+ VLSAC+YSG  ++G EIF SM   + ++P   HYACM++
Sbjct: 411 VKLFEKMIAANVAPNHVTFLAVLSACAYSGLSEQGWEIFLSMSEVHGIKPRAMHYACMIE 470

Query: 480 LLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGP 539
           LLGR G +++A+  + + P++    +W +LL ACR    L+L  V  EKL  + P+  G 
Sbjct: 471 LLGRDGLLDEAIAFIRRAPLKTTVNMWAALLNACRMQENLELGRVVAEKLYGMGPEKLGN 530

Query: 540 YVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPI 599
           YV++ +MY S G+  +   V E ++++ +  +P  +W+EV  + H F+ GD      + +
Sbjct: 531 YVVMYNMYNSMGKTAEAAGVLETLESKGLSMMPACTWVEVGDQTHSFLSGDRFDSYNETV 590

Query: 600 IMKMLERLDGLLRDA---GYSPDHSFVLHDVEEEEKTHSLGYHSEKLAIAYGLLKVPEGM 656
             ++ +++D L+ +    GYS +   +L DV+E+E+     YHSEKLAIAYGL+  PE  
Sbjct: 591 KRQIYQKVDELMEEISEYGYSEEEQHLLPDVDEKEEERVGRYHSEKLAIAYGLVNTPEWN 650

Query: 657 PIRVMKNLRVCGDCHSAIKLIAKVTGREIIVRDANRFHHFKDGYCSCKDYW 707
           P+++ +N R+C +CH  ++ I+ VTGRE++VRDA+RFHHFK+G CSC  YW
Sbjct: 651 PLQITQNHRICKNCHKVVEFISLVTGREMVVRDASRFHHFKEGKCSCGGYW 701



 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 151/339 (44%), Gaps = 63/339 (18%)

Query: 28  YARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEK------- 80
           + + G I +AR++FDE P   R   S+ ++++ +       +A  LF+   E+       
Sbjct: 168 HVKCGMIIDARRLFDEIPE--RNLYSYYSIISGFVNFGNYVEAFELFKMMWEELSDCETH 225

Query: 81  --------------------------------NIVSWNGMVSGFVKNGMVAEARRVFDAM 108
                                           N     G++  + K G + +AR  F+ M
Sbjct: 226 TFAVMLRASAGLGSIYVGKQLHVCALKLGVVDNTFVSCGLIDMYSKCGDIEDARCAFECM 285

Query: 109 PVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV----VSWTVMLGGLLKDSRVEDAR 164
           P +  V+W +++ GY   G  EEA  L + M +  V     + ++M+    K +++E  +
Sbjct: 286 PEKTTVAWNNVIAGYALHGYSEEALCLLYDMRDSGVSIDQFTLSIMIRISTKLAKLELTK 345

Query: 165 K----LFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNR 220
           +    L       ++VA T ++  Y + GR++ AR +FD++P++N+++W  ++ GYA + 
Sbjct: 346 QAHASLIRNGFESEIVANTALVDFYSKWGRVDTARYVFDKLPRKNIISWNALMGGYANHG 405

Query: 221 RVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAMP----VKPVV--- 269
           R   A KLFE M       N V++ A+L    +SG   +  E F +M     +KP     
Sbjct: 406 RGTDAVKLFEKMIAANVAPNHVTFLAVLSACAYSGLSEQGWEIFLSMSEVHGIKPRAMHY 465

Query: 270 ACNEMIMGFGFDGDVDRAKAVFEKMRERDD-GTWSAMIK 307
           AC  MI   G DG +D A A   +   +     W+A++ 
Sbjct: 466 AC--MIELLGRDGLLDEAIAFIRRAPLKTTVNMWAALLN 502



 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 137/334 (41%), Gaps = 89/334 (26%)

Query: 78  PEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFW 137
           PE+ ++  N ++   VK GM+ +ARR+FD +P RN+ S+ S++ G+V  GN  EA  LF 
Sbjct: 156 PEQYMM--NRILLMHVKCGMIIDARRLFDEIPERNLYSYYSIISGFVNFGNYVEAFELFK 213

Query: 138 RMPEK-----------------------------------NVVSWTVMLGGLL----KDS 158
            M E+                                    VV  T +  GL+    K  
Sbjct: 214 MMWEELSDCETHTFAVMLRASAGLGSIYVGKQLHVCALKLGVVDNTFVSCGLIDMYSKCG 273

Query: 159 RVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPK--------------- 203
            +EDAR  F+ MP K  VA  N+I GY   G  EEA  L  +M                 
Sbjct: 274 DIEDARCAFECMPEKTTVAWNNVIAGYALHGYSEEALCLLYDMRDSGVSIDQFTLSIMIR 333

Query: 204 -------------------RN-----VVTWTTMVSGYARNRRVDVARKLFEVMPERNEVS 239
                              RN     +V  T +V  Y++  RVD AR +F+ +P +N +S
Sbjct: 334 ISTKLAKLELTKQAHASLIRNGFESEIVANTALVDFYSKWGRVDTARYVFDKLPRKNIIS 393

Query: 240 WTAMLMGYTHSGRMREASEFFDAMPVKPV----VACNEMIMGFGFDGDVDRAKAVFEKMR 295
           W A++ GY + GR  +A + F+ M    V    V    ++    + G  ++   +F  M 
Sbjct: 394 WNALMGGYANHGRGTDAVKLFEKMIAANVAPNHVTFLAVLSACAYSGLSEQGWEIFLSMS 453

Query: 296 ERDDGT-----WSAMIKVYERKGFELEALGLFAR 324
           E          ++ MI++  R G   EA+    R
Sbjct: 454 EVHGIKPRAMHYACMIELLGRDGLLDEAIAFIRR 487



 Score = 76.6 bits (187), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 132/300 (44%), Gaps = 25/300 (8%)

Query: 56  AMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNV-- 113
            ++  Y +      A   FE  PEK  V+WN +++G+  +G   EA  +   M    V  
Sbjct: 264 GLIDMYSKCGDIEDARCAFECMPEKTTVAWNNVIAGYALHGYSEEALCLLYDMRDSGVSI 323

Query: 114 --VSWTSMVRGYVQEGNVEEAER----LFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLF 167
              + + M+R   +   +E  ++    L     E  +V+ T ++    K  RV+ AR +F
Sbjct: 324 DQFTLSIMIRISTKLAKLELTKQAHASLIRNGFESEIVANTALVDFYSKWGRVDTARYVF 383

Query: 168 DMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNV----VTWTTMVSGYARNRRVD 223
           D +P K++++   ++GGY   GR  +A  LF++M   NV    VT+  ++S  A +   +
Sbjct: 384 DKLPRKNIISWNALMGGYANHGRGTDAVKLFEKMIAANVAPNHVTFLAVLSACAYSGLSE 443

Query: 224 VARKLFEVMPERNEVSWTAM-------LMGYTHSGRMREASEFFDAMPVKPVVAC-NEMI 275
              ++F  M E + +   AM       L+G    G + EA  F    P+K  V     ++
Sbjct: 444 QGWEIFLSMSEVHGIKPRAMHYACMIELLG--RDGLLDEAIAFIRRAPLKTTVNMWAALL 501

Query: 276 MGFGFDGDVDRAKAVFEK---MRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAAL 332
                  +++  + V EK   M     G +  M  +Y   G   EA G+   ++ +G ++
Sbjct: 502 NACRMQENLELGRVVAEKLYGMGPEKLGNYVVMYNMYNSMGKTAEAAGVLETLESKGLSM 561



 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 112/254 (44%), Gaps = 38/254 (14%)

Query: 21  STGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEK 80
           +T  +  Y++ G+++ AR VFD+ P   +   SWNA++  Y    +   AV LFE     
Sbjct: 363 NTALVDFYSKWGRVDTARYVFDKLPR--KNIISWNALMGGYANHGRGTDAVKLFEKMIAA 420

Query: 81  NI----VSWNGMVSGFVKNGMVAEARRVFDAMP-VRNV----VSWTSMVRGYVQEGNVEE 131
           N+    V++  ++S    +G+  +   +F +M  V  +    + +  M+    ++G ++E
Sbjct: 421 NVAPNHVTFLAVLSACAYSGLSEQGWEIFLSMSEVHGIKPRAMHYACMIELLGRDGLLDE 480

Query: 132 AERLFWRMPEKNVVS-WTVMLGGLLKDSRVEDAR----KLFDMMPVK--DVVAVTNMIGG 184
           A     R P K  V+ W  +L        +E  R    KL+ M P K  + V + NM   
Sbjct: 481 AIAFIRRAPLKTTVNMWAALLNACRMQENLELGRVVAEKLYGMGPEKLGNYVVMYNM--- 537

Query: 185 YCEEGRLEEARALFDEMPKRNV-----VTWT-------TMVSG-----YARNRRVDVARK 227
           Y   G+  EA  + + +  + +      TW        + +SG     Y    +  + +K
Sbjct: 538 YNSMGKTAEAAGVLETLESKGLSMMPACTWVEVGDQTHSFLSGDRFDSYNETVKRQIYQK 597

Query: 228 LFEVMPERNEVSWT 241
           + E+M E +E  ++
Sbjct: 598 VDELMEEISEYGYS 611



 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 80/163 (49%), Gaps = 2/163 (1%)

Query: 354 RQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQH 413
           ++V+  ++ + F+ + Y+ + ++ M+VKCG ++ A+ +F+  P +++  + S+I+G+   
Sbjct: 143 KRVYGFMMSNGFEPEQYMMNRILLMHVKCGMIIDARRLFDEIPERNLYSYYSIISGFVNF 202

Query: 414 GLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEH 473
           G   EA  +F+ M       +  +F  +L A +  G +  G+++      K  V      
Sbjct: 203 GNYVEAFELFKMMWEELSDCETHTFAVMLRASAGLGSIYVGKQL-HVCALKLGVVDNTFV 261

Query: 474 YACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTH 516
              ++D+  + G + DA    E MP E   + W +++     H
Sbjct: 262 SCGLIDMYSKCGDIEDARCAFECMP-EKTTVAWNNVIAGYALH 303


>AT2G41080.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:17132857-17134554 FORWARD
           LENGTH=565
          Length = 565

 Score =  350 bits (898), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 202/594 (34%), Positives = 322/594 (54%), Gaps = 41/594 (6%)

Query: 123 YVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMI 182
           Y + G+   A  ++ RM +KN +S  +++ G ++   + +ARK+FD MP + +     MI
Sbjct: 4   YSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMI 63

Query: 183 GGYCEEGRLEEARALFDEMP----KRNVVTWTTMVSGYARNRRVDVARKL----FEVMPE 234
            G  +    EE  +LF EM       +  T  ++ SG A  R V + +++     +   E
Sbjct: 64  AGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLE 123

Query: 235 RNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKM 294
            + V  +++   Y  +G++++      +MPV+ +VA N +IMG                 
Sbjct: 124 LDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNA--------------- 168

Query: 295 RERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGR 354
                           + G     L L+  M+  G   N                   G+
Sbjct: 169 ----------------QNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQ 212

Query: 355 QVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHG 414
           Q+HA  ++      + V S+LI+MY KCG L  A   F+    +D VMW+SMI+ Y  HG
Sbjct: 213 QIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHG 272

Query: 415 LGEEALNVFRDMC-LSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEH 473
            G+EA+ +F  M   + +  ++++F+ +L ACS+SG   +G E+F+ M  KY  +PG++H
Sbjct: 273 QGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKH 332

Query: 474 YACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLE 533
           Y C+VDLLGRAG ++ A  I+  MP++ D ++W +LL AC  H   ++A+   +++ Q++
Sbjct: 333 YTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQID 392

Query: 534 PKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNC 593
           P ++  YVLL++++AS  RW DV  VR+ ++ ++V K  G SW E + + H F  GD + 
Sbjct: 393 PNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRS- 451

Query: 594 HPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDVEEEEKTHSLGYHSEKLAIAYGLLKVP 653
             +   I   L+ L   ++  GY PD + VLHD++EEEK   L  HSEKLA+A+ L+ +P
Sbjct: 452 QSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILP 511

Query: 654 EGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIVRDANRFHHFKDGYCSCKDYW 707
           EG PIR++KNLRVC DCH A K I+ +  REI +RD +RFHHF +G CSC DYW
Sbjct: 512 EGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 565



 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 100/423 (23%), Positives = 191/423 (45%), Gaps = 23/423 (5%)

Query: 70  AVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNV 129
           AV ++    +KN +S N +++G+V+ G +  AR+VFD MP R + +W +M+ G +Q    
Sbjct: 13  AVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFN 72

Query: 130 EEAERLFWRMPEKNVVSWTVMLGGLLKDS---RVEDARKLFDMMPVK-----DVVAVTNM 181
           EE   LF  M           LG +   S   R     +      +K     D+V  +++
Sbjct: 73  EEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSL 132

Query: 182 IGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMP----ERNE 237
              Y   G+L++   +   MP RN+V W T++ G A+N   +    L+++M       N+
Sbjct: 133 AHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNK 192

Query: 238 VSWTAMLMGYTHSGRMREASEFFDAMPVK-----PVVACNEMIMGFGFDGDVDRAKAVFE 292
           +++  +L   +    +R   +   A  +K      V   + +I  +   G +  A   F 
Sbjct: 193 ITFVTVLSSCSDLA-IRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFS 251

Query: 293 KMRERDDGTWSAMIKVYERKGFELEALGLFARM-QREGAALNFPXXXXXXXXXXXXXXXD 351
           +  + D+  WS+MI  Y   G   EA+ LF  M ++    +N                 D
Sbjct: 252 EREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKD 311

Query: 352 HGRQVHARLV-RSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLK-DVVMWNSMITG 409
            G ++   +V +  F   L   + ++ +  + G L +A+ I    P+K D+V+W ++++ 
Sbjct: 312 KGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSA 371

Query: 410 YSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCK-YQVE 468
            + H   E A  VF+++ L   P D   ++ + +  + + + ++  E+ +SM+ K  + E
Sbjct: 372 CNIHKNAEMAQRVFKEI-LQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKE 430

Query: 469 PGI 471
            GI
Sbjct: 431 AGI 433



 Score = 73.9 bits (180), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 76/363 (20%), Positives = 143/363 (39%), Gaps = 90/363 (24%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVS 84
           +S Y+++G   +A  V+      +  +S  N ++  Y +A     A  +F+  P++ + +
Sbjct: 1   MSMYSKLGDFPSAVAVYGRMRKKNYMSS--NILINGYVRAGDLVNARKVFDEMPDRKLTT 58

Query: 85  WNGMVSGFVKNGMVAEARRVFDAM--------------------PVRNV----------- 113
           WN M++G ++     E   +F  M                     +R+V           
Sbjct: 59  WNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTI 118

Query: 114 --------VSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARK 165
                   V  +S+   Y++ G +++ E +   MP +N+V+W  ++ G  ++   E    
Sbjct: 119 KYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLY 178

Query: 166 LFDMMPV-----KDVVAVT----------------------------------NMIGGYC 186
           L+ MM +       +  VT                                  ++I  Y 
Sbjct: 179 LYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYS 238

Query: 187 EEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPER-----NEVSWT 241
           + G L +A   F E    + V W++M+S Y  + + D A +LF  M E+     NEV++ 
Sbjct: 239 KCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFL 298

Query: 242 AMLMGYTHSGRMREASEFFDAM----PVKPVVACNEMIMG-FGFDGDVDRAKAVFEKMRE 296
            +L   +HSG   +  E FD M      KP +     ++   G  G +D+A+A+   M  
Sbjct: 299 NLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPI 358

Query: 297 RDD 299
           + D
Sbjct: 359 KTD 361


>AT1G31920.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:11461864-11463684 REVERSE
           LENGTH=606
          Length = 606

 Score =  348 bits (894), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 186/529 (35%), Positives = 296/529 (55%), Gaps = 10/529 (1%)

Query: 188 EGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAM 243
           E  +  A ++F  +       + TM+ GY      + A   +  M +R    +  ++  +
Sbjct: 79  ENSMNYAASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCL 138

Query: 244 LMGYTHSGRMREASEF----FDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDD 299
           L   T    +RE  +     F       V   N +I  +G  G+++ + AVFEK+  +  
Sbjct: 139 LKACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTA 198

Query: 300 GTWSAMIKVYERKGFELEALGLFARMQRE-GAALNFPXXXXXXXXXXXXXXXDHGRQVHA 358
            +WS+M+      G   E L LF  M  E                       + G  +H 
Sbjct: 199 ASWSSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHG 258

Query: 359 RLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEE 418
            L+R+  + ++ V ++L+ MYVKCG L +A  IF +   ++ + +++MI+G + HG GE 
Sbjct: 259 FLLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGES 318

Query: 419 ALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMV 478
           AL +F  M   G+ PD + ++ VL+ACS+SG VKEGR +F  M  + +VEP  EHY C+V
Sbjct: 319 ALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLV 378

Query: 479 DLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAG 538
           DLLGRAG + +A+E ++ +P+E + ++W + L  CR    ++L ++A ++L +L   N G
Sbjct: 379 DLLGRAGLLEEALETIQSIPIEKNDVIWRTFLSQCRVRQNIELGQIAAQELLKLSSHNPG 438

Query: 539 PYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQP 598
            Y+L+S++Y+    W+DV   R +I  + + + PG+S +E++ K H FV  D + HP+  
Sbjct: 439 DYLLISNLYSQGQMWDDVARTRTEIAIKGLKQTPGFSIVELKGKTHRFVSQDRS-HPKCK 497

Query: 599 IIMKMLERLDGLLRDAGYSPDHSFVLHDVEEEEKTHSLGYHSEKLAIAYGLLKVPEGMPI 658
            I KML +++  L+  GYSPD + +L +V+EEEK   L  HS+K+AIA+GLL  P G  I
Sbjct: 498 EIYKMLHQMEWQLKFEGYSPDLTQILLNVDEEEKKERLKGHSQKVAIAFGLLYTPPGSII 557

Query: 659 RVMKNLRVCGDCHSAIKLIAKVTGREIIVRDANRFHHFKDGYCSCKDYW 707
           ++ +NLR+C DCH+  K I+ +  REI+VRD NRFH FK G CSCKDYW
Sbjct: 558 KIARNLRMCSDCHTYTKKISMIYEREIVVRDRNRFHLFKGGTCSCKDYW 606



 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 68/328 (20%), Positives = 137/328 (41%), Gaps = 21/328 (6%)

Query: 101 ARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEA----ERLFWRMPEKNVVSWTVMLGGLLK 156
           A  +F  +       + +M+RGYV   + EEA      +  R  E +  ++  +L    +
Sbjct: 85  AASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTR 144

Query: 157 DSRVEDARKL----FDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTM 212
              + + +++    F +    DV    ++I  Y   G +E + A+F+++  +   +W++M
Sbjct: 145 LKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSM 204

Query: 213 VSGYARNRRVDVARKLFEVM-PERN----EVSWTAMLMGYTHSGRMREASEFFDAMPVKP 267
           VS  A          LF  M  E N    E    + L+   ++G +         + ++ 
Sbjct: 205 VSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFL-LRN 263

Query: 268 VVACNEMIMGFGFD-----GDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLF 322
           +   N ++     D     G +D+A  +F+KM +R++ T+SAMI      G    AL +F
Sbjct: 264 ISELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMF 323

Query: 323 ARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVR-SEFDQDLYVASALITMYVK 381
           ++M +EG   +                   GR+V A +++  + +        L+ +  +
Sbjct: 324 SKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGR 383

Query: 382 CGDLVRAKWIFNRYPL-KDVVMWNSMIT 408
            G L  A       P+ K+ V+W + ++
Sbjct: 384 AGLLEEALETIQSIPIEKNDVIWRTFLS 411



 Score = 60.1 bits (144), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 95/204 (46%), Gaps = 13/204 (6%)

Query: 73  LFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEA 132
           +F+   E ++   N +++ + + G +  +  VF+ +  +   SW+SMV      G   E 
Sbjct: 158 VFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGMGMWSEC 217

Query: 133 ERLFWRM-PEKNV-VSWTVMLGGLLKDSRVEDARK-------LFDMMPVKDVVAVTNMIG 183
             LF  M  E N+    + M+  LL  +              L   +   +++  T+++ 
Sbjct: 218 LLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIVQTSLVD 277

Query: 184 GYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVM----PERNEVS 239
            Y + G L++A  +F +M KRN +T++ M+SG A +   + A ++F  M     E + V 
Sbjct: 278 MYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDHVV 337

Query: 240 WTAMLMGYTHSGRMREASEFFDAM 263
           + ++L   +HSG ++E    F  M
Sbjct: 338 YVSVLNACSHSGLVKEGRRVFAEM 361



 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 99/243 (40%), Gaps = 58/243 (23%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFE--------- 75
           I+ Y R G++E +  VF++     +T +SW++MV+A        + + LF          
Sbjct: 174 INMYGRCGEMELSSAVFEKLES--KTAASWSSMVSARAGMGMWSECLLLFRGMCSETNLK 231

Query: 76  -------------------------------TTPEKNIVSWNGMVSGFVKNGMVAEARRV 104
                                             E NI+    +V  +VK G + +A  +
Sbjct: 232 AEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIVQTSLVDMYVKCGCLDKALHI 291

Query: 105 FDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV----VSWTVMLGGLLKDSRV 160
           F  M  RN +++++M+ G    G  E A R+F +M ++ +    V +  +L        V
Sbjct: 292 FQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLV 351

Query: 161 EDARKLFDMMPVKDVVAVT--------NMIGGYCEEGRLEEARALFDEMP-KRNVVTWTT 211
           ++ R++F  M  +  V  T        +++G     G LEEA      +P ++N V W T
Sbjct: 352 KEGRRVFAEMLKEGKVEPTAEHYGCLVDLLG---RAGLLEEALETIQSIPIEKNDVIWRT 408

Query: 212 MVS 214
            +S
Sbjct: 409 FLS 411


>AT1G71420.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:26917822-26920059 REVERSE
           LENGTH=745
          Length = 745

 Score =  348 bits (893), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 223/724 (30%), Positives = 378/724 (52%), Gaps = 62/724 (8%)

Query: 30  RIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFE---TTP---EKNIV 83
           R G I  A  +F   P   ++  ++ A+  A  +       + L     + P    +N++
Sbjct: 38  RSGDIRRAVSLFYSAPVELQSQQAYAALFQACAEQRNLLDGINLHHHMLSHPYCYSQNVI 97

Query: 84  SWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKN 143
             N +++ + K G +  AR+VFD MP RNVVSWT+++ GYVQ GN +E   LF  M   +
Sbjct: 98  LANFLINMYAKCGNILYARQVFDTMPERNVVSWTALITGYVQAGNEQEGFCLFSSMLS-H 156

Query: 144 VVSWTVMLGGLLKDSRVEDARKLFDM---MPVKDVVAVTNMI---GGYCEEGRLE-EARA 196
                  L  +L   R E  +++  +   + +   + V N +    G C +G    EA  
Sbjct: 157 CFPNEFTLSSVLTSCRYEPGKQVHGLALKLGLHCSIYVANAVISMYGRCHDGAAAYEAWT 216

Query: 197 LFDEMPKRNVVTWTTMVS-----------------------GYARNRRVDVARKLF---E 230
           +F+ +  +N+VTW +M++                       G+ R   +++   L+   +
Sbjct: 217 VFEAIKFKNLVTWNSMIAAFQCCNLGKKAIGVFMRMHSDGVGFDRATLLNICSSLYKSSD 276

Query: 231 VMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAV 290
           ++P  NEVS   + +   HS  ++        +    +   +EM+  +      D  K  
Sbjct: 277 LVP--NEVSKCCLQL---HSLTVKSGLVTQTEVATALIKVYSEMLEDY-----TDCYKLF 326

Query: 291 FEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXX 350
            E    RD   W+ +I  +     E  A+ LF ++++E  + ++                
Sbjct: 327 MEMSHCRDIVAWNGIITAFAVYDPE-RAIHLFGQLRQEKLSPDWYTFSSVLKACAGLVTA 385

Query: 351 DHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGY 410
            H   +HA++++  F  D  + ++LI  Y KCG L     +F+    +DVV WNSM+  Y
Sbjct: 386 RHALSIHAQVIKGGFLADTVLNNSLIHAYAKCGSLDLCMRVFDDMDSRDVVSWNSMLKAY 445

Query: 411 SQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPG 470
           S HG  +  L VF+ M    + PD  +FI +LSACS++G+V+EG  IF SM  K +  P 
Sbjct: 446 SLHGQVDSILPVFQKM---DINPDSATFIALLSACSHAGRVEEGLRIFRSMFEKPETLPQ 502

Query: 471 IEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLA 530
           + HYAC++D+L RA +  +A E++++MPM+PDA+VW +LLG+CR H    L ++A +KL 
Sbjct: 503 LNHYACVIDMLSRAERFAEAEEVIKQMPMDPDAVVWIALLGSCRKHGNTRLGKLAADKLK 562

Query: 531 QL-EPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGG 589
           +L EP N+  Y+ +S++Y ++G + +  +  ++++T  V K P  SW E+  K H F  G
Sbjct: 563 ELVEPTNSMSYIQMSNIYNAEGSFNEANLSIKEMETWRVRKEPDLSWTEIGNKVHEFASG 622

Query: 590 DNNCHPEQPIIMKMLERLDGLLRDAGYSPD-HSFVLHDVEEEEKTHSLGYHSEKLAIAYG 648
             +  P++  + + L+RL   L++ GY P+  S      +EE++  +L +HSEKLA+A+ 
Sbjct: 623 GRH-RPDKEAVYRELKRLISWLKEMGYVPEMRSASQDIEDEEQEEDNLLHHSEKLALAFA 681

Query: 649 LLKVPEGMP-----IRVMKNLRVCGDCHSAIKLIAKVTGREIIVRDANRFHHFKDGYCSC 703
           +++  +        I++MKN R+C DCH+ +KL +K+ G+EI++RD+NRFHHFKD  CSC
Sbjct: 682 VMEGRKSSDCGVNLIQIMKNTRICIDCHNFMKLASKLLGKEILMRDSNRFHHFKDSSCSC 741

Query: 704 KDYW 707
            DYW
Sbjct: 742 NDYW 745


>AT5G52630.1 | Symbols: MEF1 | mitochondrial RNAediting factor 1 |
           chr5:21350375-21352141 FORWARD LENGTH=588
          Length = 588

 Score =  344 bits (882), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 178/426 (41%), Positives = 267/426 (62%), Gaps = 2/426 (0%)

Query: 282 GDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXX 341
           G++  A+ +F++M +R+  TWS M+  Y + G   EAL LF     E  A+N        
Sbjct: 165 GEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVNDYSFSSVI 224

Query: 342 XXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVV 401
                    + GRQ+H   ++S FD   +V S+L+++Y KCG    A  +FN  P+K++ 
Sbjct: 225 SVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVPVKNLG 284

Query: 402 MWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESM 461
           +WN+M+  Y+QH   ++ + +F+ M LSG+ P+ I+F+ VL+ACS++G V EGR  F+ M
Sbjct: 285 IWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVDEGRYYFDQM 344

Query: 462 KCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDL 521
           K + ++EP  +HYA +VD+LGRAG++ +A+E++  MP++P   VWG+LL +C  H   +L
Sbjct: 345 K-ESRIEPTDKHYASLVDMLGRAGRLQEALEVITNMPIDPTESVWGALLTSCTVHKNTEL 403

Query: 522 AEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEK 581
           A  A +K+ +L P ++G ++ LS+ YA+ GR+ED    R+ ++ R   K  G SW+E   
Sbjct: 404 AAFAADKVFELGPVSSGMHISLSNAYAADGRFEDAAKARKLLRDRGEKKETGLSWVEERN 463

Query: 582 KAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDVEEEEKTHSLGYHSE 641
           K H F  G+   H +   I + L  L   +  AGY  D S+VL +V+ +EK  ++ YHSE
Sbjct: 464 KVHTFAAGERR-HEKSKEIYEKLAELGEEMEKAGYIADTSYVLREVDGDEKNQTIRYHSE 522

Query: 642 KLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIVRDANRFHHFKDGYC 701
           +LAIA+GL+  P   PIRVMKNLRVCGDCH+AIK ++  T R IIVRD NRFH F+DG C
Sbjct: 523 RLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFMSVCTRRVIIVRDNNRFHRFEDGKC 582

Query: 702 SCKDYW 707
           SC DYW
Sbjct: 583 SCNDYW 588



 Score = 78.6 bits (192), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 100/201 (49%), Gaps = 12/201 (5%)

Query: 75  ETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAER 134
           +T  + ++   + +V  + K G +  AR++FD MP RNVV+W+ M+ GY Q G  EEA  
Sbjct: 144 KTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGENEEALW 203

Query: 135 LFWRMPEKNVV----SWTVMLGGLLKDSRVEDARKLFDM----MPVKDVVAVTNMIGGYC 186
           LF     +N+     S++ ++      + +E  R++  +             ++++  Y 
Sbjct: 204 LFKEALFENLAVNDYSFSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYS 263

Query: 187 EEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMP----ERNEVSWTA 242
           + G  E A  +F+E+P +N+  W  M+  YA++       +LF+ M     + N +++  
Sbjct: 264 KCGVPEGAYQVFNEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLN 323

Query: 243 MLMGYTHSGRMREASEFFDAM 263
           +L   +H+G + E   +FD M
Sbjct: 324 VLNACSHAGLVDEGRYYFDQM 344



 Score = 73.2 bits (178), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 125/292 (42%), Gaps = 61/292 (20%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKN 81
           +  +  YA+ G+I  ARK+FDE P   R   +W+ M+  Y Q  +  +A+ LF+    +N
Sbjct: 155 SSLVDMYAKCGEIVYARKMFDEMP--QRNVVTWSGMMYGYAQMGENEEALWLFKEALFEN 212

Query: 82  I------------VSWNG---------------------------MVSGFVKNGMVAEAR 102
           +            V  N                            +VS + K G+   A 
Sbjct: 213 LAVNDYSFSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAY 272

Query: 103 RVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMP----EKNVVSWTVMLGGLLKDS 158
           +VF+ +PV+N+  W +M++ Y Q  + ++   LF RM     + N +++  +L       
Sbjct: 273 QVFNEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAG 332

Query: 159 RVEDARKLFDMM------PV-KDVVAVTNMIGGYCEEGRLEEARALFDEMP-KRNVVTWT 210
            V++ R  FD M      P  K   ++ +M+G     GRL+EA  +   MP       W 
Sbjct: 333 LVDEGRYYFDQMKESRIEPTDKHYASLVDMLG---RAGRLQEALEVITNMPIDPTESVWG 389

Query: 211 TMVSGYARNRRVDVAR----KLFEVMPERNEVSWTAMLMGYTHSGRMREASE 258
            +++    ++  ++A     K+FE+ P  + +   ++   Y   GR  +A++
Sbjct: 390 ALLTSCTVHKNTELAAFAADKVFELGPVSSGMH-ISLSNAYAADGRFEDAAK 440



 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/351 (21%), Positives = 151/351 (43%), Gaps = 17/351 (4%)

Query: 86  NGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM------ 139
           N +++ + K+ +  ++RR F+  P ++  +W+S++  + Q      +     +M      
Sbjct: 54  NNLINFYSKSQLPFDSRRAFEDSPQKSSTTWSSIISCFAQNELPWMSLEFLKKMMAGNLR 113

Query: 140 PEKNVVSWTVMLGGLLKDSRVEDARKLFDMMP--VKDVVAVTNMIGGYCEEGRLEEARAL 197
           P+ +V+        +L    +  +     M      DV   ++++  Y + G +  AR +
Sbjct: 114 PDDHVLPSATKSCAILSRCDIGRSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKM 173

Query: 198 FDEMPKRNVVTWTTMVSGYARNRRVDVARKLF-EVMPER---NEVSWTAMLMGYTHSGRM 253
           FDEMP+RNVVTW+ M+ GYA+    + A  LF E + E    N+ S+++++    +S  +
Sbjct: 174 FDEMPQRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVNDYSFSSVISVCANSTLL 233

Query: 254 REASEFF----DAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVY 309
               +       +         + ++  +   G  + A  VF ++  ++ G W+AM+K Y
Sbjct: 234 ELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVPVKNLGIWNAMLKAY 293

Query: 310 ERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDL 369
            +     + + LF RM+  G   NF                D GR    ++  S  +   
Sbjct: 294 AQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVDEGRYYFDQMKESRIEPTD 353

Query: 370 YVASALITMYVKCGDLVRAKWIFNRYPLKDV-VMWNSMITGYSQHGLGEEA 419
              ++L+ M  + G L  A  +    P+     +W +++T  + H   E A
Sbjct: 354 KHYASLVDMLGRAGRLQEALEVITNMPIDPTESVWGALLTSCTVHKNTELA 404



 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/318 (20%), Positives = 125/318 (39%), Gaps = 53/318 (16%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVV 114
           +++V  Y +  +   A  +F+  P++N+V+W+GM+ G+ + G   EA  +F      N+ 
Sbjct: 155 SSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLA 214

Query: 115 ----SWTS-----------------------------------MVRGYVQEGNVEEAERL 135
               S++S                                   +V  Y + G  E A ++
Sbjct: 215 VNDYSFSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQV 274

Query: 136 FWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVK----DVVAVTNMIGGYCEEGRL 191
           F  +P KN+  W  ML    + S  +   +LF  M +     + +   N++      G +
Sbjct: 275 FNEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLV 334

Query: 192 EEARALFDEMPKRNVVT----WTTMVSGYARNRRVDVARKLFEVMP-ERNEVSWTAMLMG 246
           +E R  FD+M +  +      + ++V    R  R+  A ++   MP +  E  W A+L  
Sbjct: 335 DEGRYYFDQMKESRIEPTDKHYASLVDMLGRAGRLQEALEVITNMPIDPTESVWGALLTS 394

Query: 247 YTHSGRMR----EASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTW 302
            T           A + F+  PV   +  + +   +  DG  + A    + +R+R +   
Sbjct: 395 CTVHKNTELAAFAADKVFELGPVSSGMHIS-LSNAYAADGRFEDAAKARKLLRDRGEKKE 453

Query: 303 SAMIKVYERKGFELEALG 320
           + +  V ER      A G
Sbjct: 454 TGLSWVEERNKVHTFAAG 471


>AT2G33760.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:14275800-14277551 FORWARD
           LENGTH=583
          Length = 583

 Score =  342 bits (878), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 186/550 (33%), Positives = 308/550 (56%), Gaps = 30/550 (5%)

Query: 178 VTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNE 237
           +T +I   C    +     LF  +P  +   + +++   ++ R       L  V   R  
Sbjct: 44  LTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKSTSKLRL-----PLHCVAYYRRM 98

Query: 238 VSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFD--------------GD 283
           +S       YT +  ++  ++   A+ +   V C+ ++ GFG D              GD
Sbjct: 99  LSSNVSPSNYTFTSVIKSCADL-SALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGD 157

Query: 284 VDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXX 343
           ++ A+ VF++M E+    W++++  +E+ G   EA+ +F +M+  G   +          
Sbjct: 158 MEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSA 217

Query: 344 XXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMW 403
                    G  VH  ++    D ++ + +ALI +Y +CGD+ +A+ +F++    +V  W
Sbjct: 218 CAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAW 277

Query: 404 NSMITGYSQHGLGEEALNVFRDM---CLSGVPPDDISFIGVLSACSYSGKVKEGREIFES 460
            +MI+ Y  HG G++A+ +F  M   C  G  P++++F+ VLSAC+++G V+EGR +++ 
Sbjct: 278 TAMISAYGTHGYGQQAVELFNKMEDDC--GPIPNNVTFVAVLSACAHAGLVEEGRSVYKR 335

Query: 461 MKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAI---VWGSLLGACRTHM 517
           M   Y++ PG+EH+ CMVD+LGRAG +++A + + ++     A    +W ++LGAC+ H 
Sbjct: 336 MTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKATAPALWTAMLGACKMHR 395

Query: 518 KLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWI 577
             DL     ++L  LEP N G +V+LS++YA  G+ ++V  +R+ +   ++ K  GYS I
Sbjct: 396 NYDLGVEIAKRLIALEPDNPGHHVMLSNIYALSGKTDEVSHIRDGMMRNNLRKQVGYSVI 455

Query: 578 EVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDVEEEEKTHSLG 637
           EVE K +MF  GD + H E   I + LE L    ++ GY+P    V+H VEEEEK  +L 
Sbjct: 456 EVENKTYMFSMGDES-HQETGEIYRYLETLISRCKEIGYAPVSEEVMHQVEEEEKEFALR 514

Query: 638 YHSEKLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIVRDANRFHHFK 697
           YHSEKLA+A+GLLK  + + I ++KNLR+C DCHSA K I+ V+ R+I VRD  RFHHF+
Sbjct: 515 YHSEKLAVAFGLLKTVD-VAITIVKNLRICEDCHSAFKYISIVSNRQITVRDKLRFHHFQ 573

Query: 698 DGYCSCKDYW 707
           +G CSC DYW
Sbjct: 574 NGSCSCLDYW 583



 Score = 83.2 bits (204), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 110/248 (44%), Gaps = 34/248 (13%)

Query: 87  GMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVS 146
            +V+ + K G +  AR+VFD MP +++V+W S+V G+ Q G  +EA ++F++M E     
Sbjct: 147 ALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEP 206

Query: 147 WTVMLGGLLKDSRVEDARKL------------FDMMPVKDVVAVTNMIGGYCEEGRLEEA 194
            +     LL       A  L             D+    +V   T +I  Y   G + +A
Sbjct: 207 DSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDL----NVKLGTALINLYSRCGDVGKA 262

Query: 195 RALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVM-----PERNEVSWTAMLMGYTH 249
           R +FD+M + NV  WT M+S Y  +     A +LF  M     P  N V++ A+L    H
Sbjct: 263 REVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAH 322

Query: 250 SGRMREASEFFDAMP----VKPVV---ACNEMIMGFGFDGDVDRAKAVFEKMRERDDGT- 301
           +G + E    +  M     + P V    C  M+   G  G +D A     ++      T 
Sbjct: 323 AGLVEEGRSVYKRMTKSYRLIPGVEHHVC--MVDMLGRAGFLDEAYKFIHQLDATGKATA 380

Query: 302 ---WSAMI 306
              W+AM+
Sbjct: 381 PALWTAML 388



 Score = 79.7 bits (195), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 97/203 (47%), Gaps = 17/203 (8%)

Query: 174 DVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMP 233
           D      ++  Y + G +E AR +FD MP++++V W ++VSG+ +N   D A ++F  M 
Sbjct: 141 DTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMR 200

Query: 234 ER----NEVSWTAMLMGYTHSGRMREA--------SEFFDAMPVKPVVACNEMIMGFGFD 281
           E     +  ++ ++L     +G +           SE  D + VK   A   +I  +   
Sbjct: 201 ESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLD-LNVKLGTA---LINLYSRC 256

Query: 282 GDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQRE-GAALNFPXXXXX 340
           GDV +A+ VF+KM+E +   W+AMI  Y   G+  +A+ LF +M+ + G   N       
Sbjct: 257 GDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAV 316

Query: 341 XXXXXXXXXXDHGRQVHARLVRS 363
                     + GR V+ R+ +S
Sbjct: 317 LSACAHAGLVEEGRSVYKRMTKS 339



 Score = 63.2 bits (152), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 92/199 (46%), Gaps = 16/199 (8%)

Query: 354 RQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQH 413
           +QVHA L+ + + +   + + LIT+      +     +F   PL D  ++NS+I   S+ 
Sbjct: 26  QQVHAHLIVTGYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKSTSKL 85

Query: 414 GLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEP-GIE 472
            L    +  +R M  S V P + +F  V+ +C+    ++ G+ +     C   V   G++
Sbjct: 86  RLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGV----HCHAVVSGFGLD 141

Query: 473 HY--ACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLA 530
            Y  A +V    + G +  A ++ ++MP E   + W SL+     +    LA+ A++   
Sbjct: 142 TYVQAALVTFYSKCGDMEGARQVFDRMP-EKSIVAWNSLVSGFEQN---GLADEAIQVFY 197

Query: 531 QL-----EPKNAGPYVLLS 544
           Q+     EP +A    LLS
Sbjct: 198 QMRESGFEPDSATFVSLLS 216



 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 91/205 (44%), Gaps = 25/205 (12%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLF-----ET 76
           T  I+ Y+R G +  AR+VFD+    +   ++W AM++AY       QAV LF     + 
Sbjct: 247 TALINLYSRCGDVGKAREVFDKMKETN--VAAWTAMISAYGTHGYGQQAVELFNKMEDDC 304

Query: 77  TPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMP-----VRNVVSWTSMVRGYVQEGNVEE 131
            P  N V++  ++S     G+V E R V+  M      +  V     MV    + G ++E
Sbjct: 305 GPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDE 364

Query: 132 AERLFWRMPEKNVVS----WTVMLGGLLK----DSRVEDARKLFDMMPVK--DVVAVTNM 181
           A +   ++      +    WT MLG        D  VE A++L  + P      V ++N+
Sbjct: 365 AYKFIHQLDATGKATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLSNI 424

Query: 182 IGGYCEEGRLEEARALFDEMPKRNV 206
              Y   G+ +E   + D M + N+
Sbjct: 425 ---YALSGKTDEVSHIRDGMMRNNL 446


>AT3G56550.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:20952896-20954641 REVERSE
           LENGTH=581
          Length = 581

 Score =  342 bits (876), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 180/451 (39%), Positives = 256/451 (56%), Gaps = 14/451 (3%)

Query: 261 DAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALG 320
           DA+    +V C      +  +G V+ A  VF++M  RD  +W+ MI  +   G   +AL 
Sbjct: 141 DAIVATSLVRC------YSANGSVEIASKVFDEMPVRDLVSWNVMICCFSHVGLHNQALS 194

Query: 321 LFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYV 380
           ++ RM  EG   +                 + G  +H        +  ++V++ALI MY 
Sbjct: 195 MYKRMGNEGVCGDSYTLVALLSSCAHVSALNMGVMLHRIACDIRCESCVFVSNALIDMYA 254

Query: 381 KCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIG 440
           KCG L  A  +FN    +DV+ WNSMI GY  HG G EA++ FR M  SGV P+ I+F+G
Sbjct: 255 KCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVASGVRPNAITFLG 314

Query: 441 VLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPME 500
           +L  CS+ G VKEG E FE M  ++ + P ++HY CMVDL GRAGQ+ +++E++      
Sbjct: 315 LLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLYGRAGQLENSLEMIYASSCH 374

Query: 501 PDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVR 560
            D ++W +LLG+C+ H  L+L EVA++KL QLE  NAG YVL++ +Y++    +    +R
Sbjct: 375 EDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLEAFNAGDYVLMTSIYSAANDAQAFASMR 434

Query: 561 EKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDH 620
           + I++  +  +PG+SWIE+  + H FV  D+  HPE  +I   L  +      AGY P+ 
Sbjct: 435 KLIRSHDLQTVPGWSWIEIGDQVHKFV-VDDKMHPESAVIYSELGEVINRAILAGYKPED 493

Query: 621 SFVLHDVEEEEKTHSLG----YHSEKLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKL 676
           S   +          LG     HSEKLAIAYGL++   G  +R+ KNLRVC DCHS  K 
Sbjct: 494 S---NRTAPTLSDRCLGSADTSHSEKLAIAYGLMRTTAGTTLRITKNLRVCRDCHSFTKY 550

Query: 677 IAKVTGREIIVRDANRFHHFKDGYCSCKDYW 707
           ++K   REIIVRD  RFHHF DG CSC DYW
Sbjct: 551 VSKAFNREIIVRDRVRFHHFADGICSCNDYW 581



 Score = 85.9 bits (211), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 92/188 (48%), Gaps = 12/188 (6%)

Query: 88  MVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSW 147
           +V  +  NG V  A +VFD MPVR++VSW  M+  +   G   +A  ++ RM  + V   
Sbjct: 148 LVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICCFSHVGLHNQALSMYKRMGNEGVCGD 207

Query: 148 TVMLGGLLKDSRVEDARKLFDMMP-------VKDVVAVTN-MIGGYCEEGRLEEARALFD 199
           +  L  LL       A  +  M+         +  V V+N +I  Y + G LE A  +F+
Sbjct: 208 SYTLVALLSSCAHVSALNMGVMLHRIACDIRCESCVFVSNALIDMYAKCGSLENAIGVFN 267

Query: 200 EMPKRNVVTWTTMVSGYARN----RRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMRE 255
            M KR+V+TW +M+ GY  +      +   RK+       N +++  +L+G +H G ++E
Sbjct: 268 GMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVASGVRPNAITFLGLLLGCSHQGLVKE 327

Query: 256 ASEFFDAM 263
             E F+ M
Sbjct: 328 GVEHFEIM 335



 Score = 82.8 bits (203), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 108/237 (45%), Gaps = 16/237 (6%)

Query: 282 GDVDRAKAVFEKMRERDDGT--WSAMIKVYERKGFELEALGLFARMQREGAA------LN 333
           G +  A+ +F+   + D  T  W+ +I+ +      L ++  + RM     +       N
Sbjct: 53  GSLSHAQLLFDHF-DSDPSTSDWNYLIRGFSNSSSPLNSILFYNRMLLSSVSRPDLFTFN 111

Query: 334 FPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFN 393
           F                    ++H  ++RS F  D  VA++L+  Y   G +  A  +F+
Sbjct: 112 FALKSCERIKSIPKCL-----EIHGSVIRSGFLDDAIVATSLVRCYSANGSVEIASKVFD 166

Query: 394 RYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKE 453
             P++D+V WN MI  +S  GL  +AL++++ M   GV  D  + + +LS+C++   +  
Sbjct: 167 EMPVRDLVSWNVMICCFSHVGLHNQALSMYKRMGNEGVCGDSYTLVALLSSCAHVSALNM 226

Query: 454 GREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLL 510
           G  +   + C  + E  +     ++D+  + G + +A+ +   M  + D + W S++
Sbjct: 227 G-VMLHRIACDIRCESCVFVSNALIDMYAKCGSLENAIGVFNGMR-KRDVLTWNSMI 281



 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/372 (20%), Positives = 139/372 (37%), Gaps = 69/372 (18%)

Query: 95  NGMVAEARRVFDAMPVRNVVS-WTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGG 153
            G ++ A+ +FD        S W  ++RG+    +   +   + RM          +L  
Sbjct: 52  TGSLSHAQLLFDHFDSDPSTSDWNYLIRGFSNSSSPLNSILFYNRM----------LLSS 101

Query: 154 LLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMV 213
           + +         L     +K +     + G     G L++A            +  T++V
Sbjct: 102 VSRPDLFTFNFALKSCERIKSIPKCLEIHGSVIRSGFLDDA------------IVATSLV 149

Query: 214 SGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPV----- 268
             Y+ N  V++A K+F+ MP R+ VSW  M+  ++H G   +A   +  M  + V     
Sbjct: 150 RCYSANGSVEIASKVFDEMPVRDLVSWNVMICCFSHVGLHNQALSMYKRMGNEGVCGDSY 209

Query: 269 -----------------------VAC-----------NEMIMGFGFDGDVDRAKAVFEKM 294
                                  +AC           N +I  +   G ++ A  VF  M
Sbjct: 210 TLVALLSSCAHVSALNMGVMLHRIACDIRCESCVFVSNALIDMYAKCGSLENAIGVFNGM 269

Query: 295 RERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGR 354
           R+RD  TW++MI  Y   G  +EA+  F +M   G   N                   G 
Sbjct: 270 RKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVASGVRPNAITFLGLLLGCSHQGLVKEGV 329

Query: 355 QVHARLVRSEFDQDLYVA--SALITMYVKCGDLVRA-KWIFNRYPLKDVVMWNSMITGYS 411
           + H  ++ S+F     V     ++ +Y + G L  + + I+     +D V+W +++    
Sbjct: 330 E-HFEIMSSQFHLTPNVKHYGCMVDLYGRAGQLENSLEMIYASSCHEDPVLWRTLLGSCK 388

Query: 412 QH---GLGEEAL 420
            H    LGE A+
Sbjct: 389 IHRNLELGEVAM 400


>AT5G44230.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:17814336-17816309 FORWARD
           LENGTH=657
          Length = 657

 Score =  341 bits (874), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 196/558 (35%), Positives = 305/558 (54%), Gaps = 15/558 (2%)

Query: 163 ARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVV----TWTTMVSGYAR 218
           AR++ + +  ++    T +I GY  EG+ +EA A++  M K  +     T++ ++     
Sbjct: 102 ARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGT 161

Query: 219 NRRVDVARKLFEVMPERNEVSW----TAMLMGYTHSGRMREASEFFDAMPVKPVVACNEM 274
            + +++ R+            +      M+  Y     +  A + FD MP + V++  E+
Sbjct: 162 MKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTEL 221

Query: 275 IMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGA---A 331
           I  +   G+++ A  +FE +  +D   W+AM+  + +     EAL  F RM++ G     
Sbjct: 222 IAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADE 281

Query: 332 LNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWI 391
           +                  D   Q+  +   S  D  + + SALI MY KCG++  A  +
Sbjct: 282 VTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDH-VVIGSALIDMYSKCGNVEEAVNV 340

Query: 392 FNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCL-SGVPPDDISFIGVLSACSYSGK 450
           F     K+V  ++SMI G + HG  +EAL++F  M   + + P+ ++F+G L ACS+SG 
Sbjct: 341 FMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGL 400

Query: 451 VKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLL 510
           V +GR++F+SM   + V+P  +HY CMVDLLGR G++ +A+E+++ M +EP   VWG+LL
Sbjct: 401 VDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALL 460

Query: 511 GACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIK 570
           GACR H   ++AE+A E L +LEP   G Y+LLS++YAS G W  V  VR+ IK + + K
Sbjct: 461 GACRIHNNPEIAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKK 520

Query: 571 LPGYSW-IEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDVEE 629
            P  SW ++   + H F  G+ N HP    I   LE L   L   GY PD S V +DV +
Sbjct: 521 TPAVSWVVDKNGQMHKFFPGNLN-HPMSNKIQDKLEELVERLTVLGYQPDLSSVPYDVSD 579

Query: 630 EEKTHSLGYHSEKLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIVRD 689
             K   L  H+EKLA+A+ LL       I +MKNLR+C DCH  ++L ++VTG+ II+RD
Sbjct: 580 NAKRLILIQHTEKLALAFSLLTTNRDSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRD 639

Query: 690 ANRFHHFKDGYCSCKDYW 707
             RFHHF+ G CSC D+W
Sbjct: 640 NMRFHHFRSGDCSCGDFW 657



 Score =  113 bits (283), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 127/265 (47%), Gaps = 24/265 (9%)

Query: 86  NGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVV 145
           N M+  +VK   +  AR+VFD MP R+V+SWT ++  Y + GN+E A  LF  +P K++V
Sbjct: 188 NTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMV 247

Query: 146 SWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEM---- 201
           +WT M+ G  ++++ ++A + FD M    + A    + GY        A    D      
Sbjct: 248 AWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIA 307

Query: 202 ------PKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMRE 255
                 P  +VV  + ++  Y++   V+ A  +F  M  +N  ++++M++G    GR +E
Sbjct: 308 QKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQE 367

Query: 256 ASEFFDAMPVKPVVACNEM-----IMGFGFDGDVDRAKAVFEKMRE-------RDDGTWS 303
           A   F  M  +  +  N +     +M     G VD+ + VF+ M +       RD   ++
Sbjct: 368 ALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDH--YT 425

Query: 304 AMIKVYERKGFELEALGLFARMQRE 328
            M+ +  R G   EAL L   M  E
Sbjct: 426 CMVDLLGRTGRLQEALELIKTMSVE 450



 Score =  112 bits (281), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 85/265 (32%), Positives = 124/265 (46%), Gaps = 26/265 (9%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVS 84
           I  Y +   I+ ARKVFDE P   R   SW  ++AAY +      A  LFE+ P K++V+
Sbjct: 191 IDMYVKCESIDCARKVFDEMPE--RDVISWTELIAAYARVGNMECAAELFESLPTKDMVA 248

Query: 85  WNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYV----QEGNVEEAERLFW--- 137
           W  MV+GF +N    EA   FD M    + +    V GY+    Q G  + A+R      
Sbjct: 249 WTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQ 308

Query: 138 ---RMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEA 194
                P  +VV  + ++    K   VE+A  +F  M  K+V   ++MI G    GR +EA
Sbjct: 309 KSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEA 368

Query: 195 RALFDEMP-----KRNVVTWTTMVSGYARNRRVDVARKLFEVM-------PERNEVSWTA 242
             LF  M      K N VT+   +   + +  VD  R++F+ M       P R+  +   
Sbjct: 369 LHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMV 428

Query: 243 MLMGYTHSGRMREASEFFDAMPVKP 267
            L+G T  GR++EA E    M V+P
Sbjct: 429 DLLGRT--GRLQEALELIKTMSVEP 451



 Score =  110 bits (274), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 129/275 (46%), Gaps = 25/275 (9%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVV 114
           N M+  Y +      A  +F+  PE++++SW  +++ + + G +  A  +F+++P +++V
Sbjct: 188 NTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMV 247

Query: 115 SWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFD------ 168
           +WT+MV G+ Q    +EA   F RM +  + +  V + G +       A K  D      
Sbjct: 248 AWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIA 307

Query: 169 ----MMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDV 224
                 P   VV  + +I  Y + G +EEA  +F  M  +NV T+++M+ G A + R   
Sbjct: 308 QKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQE 367

Query: 225 ARKLFEVMPER-----NEVSWTAMLMGYTHSGRMREASEFFDAM-------PVKPVVACN 272
           A  LF  M  +     N V++   LM  +HSG + +  + FD+M       P +    C 
Sbjct: 368 ALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTC- 426

Query: 273 EMIMGFGFDGDVDRAKAVFEKMR-ERDDGTWSAMI 306
            M+   G  G +  A  + + M  E   G W A++
Sbjct: 427 -MVDLLGRTGRLQEALELIKTMSVEPHGGVWGALL 460



 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/204 (21%), Positives = 92/204 (45%), Gaps = 7/204 (3%)

Query: 354 RQVHARLVRSEFDQDLYVASALITMYVKCGDLVR--AKWIFNRYPLKDVVMWNSMITGYS 411
           +Q+H  ++R   DQ  Y+ + LI    K G  +   A+ +      ++  +W ++I GY+
Sbjct: 66  KQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFRNPFLWTAVIRGYA 125

Query: 412 QHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGI 471
             G  +EA+ ++  M    + P   +F  +L AC     +  GR+ F +   + +    +
Sbjct: 126 IEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQ-FHAQTFRLRGFCFV 184

Query: 472 EHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQ 531
                M+D+  +   ++ A ++ ++MP E D I W  L+ A   + ++   E A E    
Sbjct: 185 YVGNTMIDMYVKCESIDCARKVFDEMP-ERDVISWTELIAA---YARVGNMECAAELFES 240

Query: 532 LEPKNAGPYVLLSHMYASKGRWED 555
           L  K+   +  +   +A   + ++
Sbjct: 241 LPTKDMVAWTAMVTGFAQNAKPQE 264


>AT5G15340.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:4982273-4984144 REVERSE
           LENGTH=623
          Length = 623

 Score =  339 bits (870), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 215/611 (35%), Positives = 321/611 (52%), Gaps = 54/611 (8%)

Query: 117 TSMVRGYVQEGNVEEAERLFWRMP--EKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVK- 173
            ++ + Y   G +  A++LF  +P  EK+ V WT +L    +   + ++ KLF  M  K 
Sbjct: 47  NALFQFYASSGEMVTAQKLFDEIPLSEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMRRKR 106

Query: 174 ---DVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVT----WTTMVSGYARNRRVDVAR 226
              D V+V  + G   +   L  A+       K  V+T       ++  Y +   V   +
Sbjct: 107 VEIDDVSVVCLFGVCAKLEDLGFAQQGHGVAVKMGVLTSVKVCNALMDMYGKCGLVSEVK 166

Query: 227 KLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDR 286
           ++FE + E++ VSWT +L                       VV          ++G ++R
Sbjct: 167 RIFEELEEKSVVSWTVVL---------------------DTVVK---------WEG-LER 195

Query: 287 AKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQ-REGAALNFPXXXXXXXXXX 345
            + VF +M ER+   W+ M+  Y   GF  E L L A M  R G  LNF           
Sbjct: 196 GREVFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACA 255

Query: 346 XXXXXDHGRQVHARLVRSEF-------DQDLYVASALITMYVKCGDLVRAKWIFNRYPLK 398
                  GR VH   ++ E          D+ V +AL+ MY KCG++  +  +F     +
Sbjct: 256 QSGNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFRLMRKR 315

Query: 399 DVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIF 458
           +VV WN++ +G + HG G   +++F  M +  V PDD++F  VLSACS+SG V EG   F
Sbjct: 316 NVVTWNALFSGLAMHGKGRMVIDMFPQM-IREVKPDDLTFTAVLSACSHSGIVDEGWRCF 374

Query: 459 ESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMK 518
            S++  Y +EP ++HYACMVDLLGRAG + +A  ++ +MP+ P+ +V GSLLG+C  H K
Sbjct: 375 HSLRF-YGLEPKVDHYACMVDLLGRAGLIEEAEILMREMPVPPNEVVLGSLLGSCSVHGK 433

Query: 519 LDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIE 578
           +++AE    +L Q+ P N    +L+S+MY ++GR +  + +R  ++ R + K+PG S I 
Sbjct: 434 VEIAERIKRELIQMSPGNTEYQILMSNMYVAEGRSDIADGLRGSLRKRGIRKIPGLSSIY 493

Query: 579 VEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDVEE--EEKTHSL 636
           V    H F  GD + HP    I   L  +   +R AGY PD S ++   E   EEK  +L
Sbjct: 494 VNDSVHRFSSGDRS-HPRTKEIYLKLNEVIERIRSAGYVPDVSGLVSHSEGDLEEKEQAL 552

Query: 637 GYHSEKLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIVRDANRFHHF 696
             HSEKLA+ +GLL+     P+ V KNLR+C DCHSA+K+++KV  REII+RD NRFH F
Sbjct: 553 CCHSEKLAVCFGLLETKPSTPLLVFKNLRICRDCHSAMKIVSKVYDREIIIRDRNRFHQF 612

Query: 697 KDGYCSCKDYW 707
           K G CSC DYW
Sbjct: 613 KGGSCSCSDYW 623



 Score = 94.4 bits (233), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/360 (23%), Positives = 146/360 (40%), Gaps = 62/360 (17%)

Query: 21  STGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEK 80
           S      YA  G++  A+K+FDE P   +    W  +++++ +      ++ LF     K
Sbjct: 46  SNALFQFYASSGEMVTAQKLFDEIPLSEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMRRK 105

Query: 81  ---------------------------------------NIVSWNGMVSGFVKNGMVAEA 101
                                                  ++   N ++  + K G+V+E 
Sbjct: 106 RVEIDDVSVVCLFGVCAKLEDLGFAQQGHGVAVKMGVLTSVKVCNALMDMYGKCGLVSEV 165

Query: 102 RRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVE 161
           +R+F+ +  ++VVSWT ++   V+   +E    +F  MPE+N V+WTVM+ G L      
Sbjct: 166 KRIFEELEEKSVVSWTVVLDTVVKWEGLERGREVFHEMPERNAVAWTVMVAGYLGAGFTR 225

Query: 162 DARKLFDMMPVK-----DVVAVTNMIGGYCEEGRLEEAR-----ALFDEM------PKRN 205
           +  +L   M  +     + V + +M+    + G L   R     AL  EM         +
Sbjct: 226 EVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVVGRWVHVYALKKEMMMGEEASYDD 285

Query: 206 VVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAM-- 263
           V+  T +V  YA+   +D +  +F +M +RN V+W A+  G    G+ R   + F  M  
Sbjct: 286 VMVGTALVDMYAKCGNIDSSMNVFRLMRKRNVVTWNALFSGLAMHGKGRMVIDMFPQMIR 345

Query: 264 PVKP-VVACNEMIMGFGFDGDVDRAKAVFEKMR----ERDDGTWSAMIKVYERKGFELEA 318
            VKP  +    ++      G VD     F  +R    E     ++ M+ +  R G   EA
Sbjct: 346 EVKPDDLTFTAVLSACSHSGIVDEGWRCFHSLRFYGLEPKVDHYACMVDLLGRAGLIEEA 405



 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 124/267 (46%), Gaps = 31/267 (11%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVV 114
           NA++  Y +     +   +FE   EK++VSW  ++   VK   +   R VF  MP RN V
Sbjct: 150 NALMDMYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWEGLERGREVFHEMPERNAV 209

Query: 115 SWTSMVRGYVQEGNVEEAERLFWRMPEK-----NVVSWTVMLGGLLKDSRVEDARKLF-- 167
           +WT MV GY+  G   E   L   M  +     N V+   ML    +   +   R +   
Sbjct: 210 AWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVVGRWVHVY 269

Query: 168 ----DMM-----PVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYAR 218
               +MM        DV+  T ++  Y + G ++ +  +F  M KRNVVTW  + SG A 
Sbjct: 270 ALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFRLMRKRNVVTWNALFSGLAM 329

Query: 219 NRRVDVARKLF-----EVMPERNEVSWTAMLMGYTHSGRMREASEFFDAM---PVKPVV- 269
           + +  +   +F     EV P  +++++TA+L   +HSG + E    F ++    ++P V 
Sbjct: 330 HGKGRMVIDMFPQMIREVKP--DDLTFTAVLSACSHSGIVDEGWRCFHSLRFYGLEPKVD 387

Query: 270 --ACNEMIMGFGFDGDVDRAKAVFEKM 294
             AC  M+   G  G ++ A+ +  +M
Sbjct: 388 HYAC--MVDLLGRAGLIEEAEILMREM 412


>AT1G59720.1 | Symbols: CRR28 | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:21939868-21941784 REVERSE
           LENGTH=638
          Length = 638

 Score =  337 bits (865), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 203/545 (37%), Positives = 287/545 (52%), Gaps = 45/545 (8%)

Query: 197 LFDEMPKRNVVTWTTMVSGYARNRRVDVARK-----LFEVMPERNEVSWTAMLMGYTHSG 251
           +FD +   +   W T++   A     DV+RK     L+  M ER E S       +    
Sbjct: 105 VFDSIENHSSFMWNTLIRACAH----DVSRKEEAFMLYRKMLERGESSPDKHTFPF---- 156

Query: 252 RMREASEFFDAMPVKPVVACNEMIMGFGFD--------------GDVDRAKAVFEKMRER 297
            + +A  +         V C  +  GFG D              G +D A+ VF++M ER
Sbjct: 157 -VLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPER 215

Query: 298 DDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVH 357
              +W++MI    R G    AL LF  MQR      +                  G   H
Sbjct: 216 SLVSWNSMIDALVRFGEYDSALQLFREMQRSFEPDGY-TMQSVLSACAGLGSLSLGTWAH 274

Query: 358 ARLVRS---EFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHG 414
           A L+R    +   D+ V ++LI MY KCG L  A+ +F     +D+  WN+MI G++ HG
Sbjct: 275 AFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHG 334

Query: 415 LGEEALNVFRDMC--LSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIE 472
             EEA+N F  M      V P+ ++F+G+L AC++ G V +GR+ F+ M   Y +EP +E
Sbjct: 335 RAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALE 394

Query: 473 HYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGAC-RTHMKLDLAEVAVEKLAQ 531
           HY C+VDL+ RAG + +A+++V  MPM+PDA++W SLL AC +    ++L+E     +  
Sbjct: 395 HYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIG 454

Query: 532 LEPKN-------AGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAH 584
            +  N       +G YVLLS +YAS  RW DV +VR+ +    + K PG S IE+   +H
Sbjct: 455 TKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISH 514

Query: 585 MFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSF--VLHDVEEEEKTHSLGYHSEK 642
            F  GD + HP+   I + L+ +D  LR  GY PD S   ++    +  K +SL  HSE+
Sbjct: 515 EFFAGDTS-HPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSER 573

Query: 643 LAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIVRDANRFHHFKDGYCS 702
           LAIA+GL+ +P   PIR+ KNLRVC DCH   KLI+KV   EIIVRD  RFHHFKDG CS
Sbjct: 574 LAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCS 633

Query: 703 CKDYW 707
           C DYW
Sbjct: 634 CLDYW 638



 Score = 89.4 bits (220), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 99/195 (50%), Gaps = 18/195 (9%)

Query: 86  NGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM-----P 140
           NG++  +   G +  AR+VFD MP R++VSW SM+   V+ G  + A +LF  M     P
Sbjct: 190 NGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRSFEP 249

Query: 141 E----KNVVSWTVMLGGLLKDSRVED--ARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEA 194
           +    ++V+S    LG L   +       RK  D+    DV+   ++I  YC+ G L  A
Sbjct: 250 DGYTMQSVLSACAGLGSLSLGTWAHAFLLRKC-DVDVAMDVLVKNSLIEMYCKCGSLRMA 308

Query: 195 RALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPER------NEVSWTAMLMGYT 248
             +F  M KR++ +W  M+ G+A + R + A   F+ M ++      N V++  +L+   
Sbjct: 309 EQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACN 368

Query: 249 HSGRMREASEFFDAM 263
           H G + +  ++FD M
Sbjct: 369 HRGFVNKGRQYFDMM 383



 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 94/390 (24%), Positives = 156/390 (40%), Gaps = 43/390 (11%)

Query: 63  QAHQPHQAVTLFETTPEK--NIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMV 120
           Q  Q H A TL  T PE+   +  +  ++        V  A RVFD++   +   W +++
Sbjct: 63  QLKQLH-AFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLI 121

Query: 121 RGYVQE-GNVEEAERLFWRM-------PEKNVVSWTVMLGGLL------KDSRVEDARKL 166
           R    +    EEA  L+ +M       P+K+   + +     +      K    +  +  
Sbjct: 122 RACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHG 181

Query: 167 FDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVAR 226
           F      DV     +I  Y   G L+ AR +FDEMP+R++V+W +M+    R    D A 
Sbjct: 182 FG----GDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSAL 237

Query: 227 KLFEVMPERNEVSWTAM--------------LMGYTHSGRMREASEFFDAMPVKPVVACN 272
           +LF  M    E     M              L  + H+  +R+     D      V+  N
Sbjct: 238 QLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKC----DVDVAMDVLVKN 293

Query: 273 EMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARM--QREGA 330
            +I  +   G +  A+ VF+ M++RD  +W+AMI  +   G   EA+  F RM  +RE  
Sbjct: 294 SLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENV 353

Query: 331 ALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSE-FDQDLYVASALITMYVKCGDLVRAK 389
             N                 + GRQ    +VR    +  L     ++ +  + G +  A 
Sbjct: 354 RPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAI 413

Query: 390 WIFNRYPLK-DVVMWNSMITGYSQHGLGEE 418
            +    P+K D V+W S++    + G   E
Sbjct: 414 DMVMSMPMKPDAVIWRSLLDACCKKGASVE 443



 Score = 70.1 bits (170), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 92/235 (39%), Gaps = 60/235 (25%)

Query: 21  STGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEK 80
           + G I  Y   G ++ ARKVFDE P   R+  SWN+M+ A  +  +   A+ LF      
Sbjct: 189 NNGLIHLYGSCGCLDLARKVFDEMP--ERSLVSWNSMIDALVRFGEYDSALQLFREMQRS 246

Query: 81  -----------------------------------------NIVSWNGMVSGFVKNGMVA 99
                                                    +++  N ++  + K G + 
Sbjct: 247 FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLR 306

Query: 100 EARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEK--NVVSWTVMLGGLLKD 157
            A +VF  M  R++ SW +M+ G+   G  EEA   F RM +K  NV   +V   GLL  
Sbjct: 307 MAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIA 366

Query: 158 SR----VEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVT 208
                 V   R+ FDMM V+D          YC E  LE    + D + +   +T
Sbjct: 367 CNHRGFVNKGRQYFDMM-VRD----------YCIEPALEHYGCIVDLIARAGYIT 410



 Score = 56.2 bits (134), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 99/257 (38%), Gaps = 53/257 (20%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVF--------- 105
           N ++  Y        A  +F+  PE+++VSWN M+   V+ G    A ++F         
Sbjct: 190 NGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRSFEP 249

Query: 106 DAMPVRNVVS------------W--------------------TSMVRGYVQEGNVEEAE 133
           D   +++V+S            W                     S++  Y + G++  AE
Sbjct: 250 DGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAE 309

Query: 134 RLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVK------DVVAVTNMIGGYCE 187
           ++F  M ++++ SW  M+ G     R E+A   FD M  K      + V    ++     
Sbjct: 310 QVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNH 369

Query: 188 EGRLEEARALFDEMPKRNVVT-----WTTMVSGYARNRRVDVARKLFEVMPER-NEVSWT 241
            G + + R  FD M +   +      +  +V   AR   +  A  +   MP + + V W 
Sbjct: 370 RGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWR 429

Query: 242 AMLMGYTHSGRMREASE 258
           ++L      G   E SE
Sbjct: 430 SLLDACCKKGASVELSE 446


>AT5G50990.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:20739453-20741281 FORWARD
           LENGTH=534
          Length = 534

 Score =  335 bits (858), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 172/427 (40%), Positives = 252/427 (59%), Gaps = 5/427 (1%)

Query: 282 GDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQR-EGAALNFPXXXXX 340
           G+   AK V     +++  TW+ MI  Y R     EAL     M        N       
Sbjct: 112 GESGLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKALKNMLSFTDIKPNKFSFASS 171

Query: 341 XXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDV 400
                      H + VH+ ++ S  + +  ++SAL+ +Y KCGD+  ++ +F      DV
Sbjct: 172 LAACARLGDLHHAKWVHSLMIDSGIELNAILSSALVDVYAKCGDIGTSREVFYSVKRNDV 231

Query: 401 VMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFES 460
            +WN+MITG++ HGL  EA+ VF +M    V PD I+F+G+L+ CS+ G ++EG+E F  
Sbjct: 232 SIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTTCSHCGLLEEGKEYFGL 291

Query: 461 MKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLD 520
           M  ++ ++P +EHY  MVDLLGRAG+V +A E++E MP+EPD ++W SLL + RT+   +
Sbjct: 292 MSRRFSIQPKLEHYGAMVDLLGRAGRVKEAYELIESMPIEPDVVIWRSLLSSSRTYKNPE 351

Query: 521 LAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVE 580
           L E+A++ L++ +   +G YVLLS++Y+S  +WE  + VRE +    + K  G SW+E  
Sbjct: 352 LGEIAIQNLSKAK---SGDYVLLSNIYSSTKKWESAQKVRELMSKEGIRKAKGKSWLEFG 408

Query: 581 KKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDVEEEEKTHSLGYHS 640
              H F  GD + H E   I K+LE L    +  G+  D   VL DV EEEK  +L YHS
Sbjct: 409 GMIHRFKAGDTS-HIETKAIYKVLEGLIQKTKSQGFVSDTDLVLMDVSEEEKEENLNYHS 467

Query: 641 EKLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIVRDANRFHHFKDGY 700
           EKLA+AY +LK   G  IR+ KN+R+C DCH+ IK ++K+  R II+RD  RFH F+DG 
Sbjct: 468 EKLALAYVILKSSPGTEIRIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDRIRFHRFEDGL 527

Query: 701 CSCKDYW 707
           CSC+DYW
Sbjct: 528 CSCRDYW 534



 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/287 (20%), Positives = 122/287 (42%), Gaps = 28/287 (9%)

Query: 11  CMVQVRFQCTSTG----------AISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAA 60
           C++Q   Q    G           ++ Y R  +   AR++      +     + N ++ +
Sbjct: 48  CVLQAHAQIFKLGYGTYPSLLVSTVAAYRRCNRSYLARRLLLWFLSLSPGVCNINLIIES 107

Query: 61  YFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPV-----RNVVS 115
             +  +   A  +     ++N+++WN M+ G+V+N    EA +    M        N  S
Sbjct: 108 LMKIGESGLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKALKNMLSFTDIKPNKFS 167

Query: 116 WTSMVRGYVQEGNVEEAERLFWRM----PEKNVVSWTVMLGGLLKDSRVEDARKLFDMMP 171
           + S +    + G++  A+ +   M     E N +  + ++    K   +  +R++F  + 
Sbjct: 168 FASSLAACARLGDLHHAKWVHSLMIDSGIELNAILSSALVDVYAKCGDIGTSREVFYSVK 227

Query: 172 VKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNV----VTWTTMVSGYARNRRVDVARK 227
             DV     MI G+   G   EA  +F EM   +V    +T+  +++  +    ++  ++
Sbjct: 228 RNDVSIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTTCSHCGLLEEGKE 287

Query: 228 LFEVMPERNEVS-----WTAMLMGYTHSGRMREASEFFDAMPVKPVV 269
            F +M  R  +      + AM+     +GR++EA E  ++MP++P V
Sbjct: 288 YFGLMSRRFSIQPKLEHYGAMVDLLGRAGRVKEAYELIESMPIEPDV 334



 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/272 (20%), Positives = 119/272 (43%), Gaps = 21/272 (7%)

Query: 56  AMVAAYFQAHQPHQA--VTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNV 113
           + VAAY + ++ + A  + L+  +    + + N ++   +K G    A++V      +NV
Sbjct: 70  STVAAYRRCNRSYLARRLLLWFLSLSPGVCNINLIIESLMKIGESGLAKKVLRNASDQNV 129

Query: 114 VSWTSMVRGYVQEGNVEEAERLFWRM-----PEKNVVSWTVMLGGLLKDSRVEDARKLFD 168
           ++W  M+ GYV+    EEA +    M      + N  S+   L    +   +  A+ +  
Sbjct: 130 ITWNLMIGGYVRNVQYEEALKALKNMLSFTDIKPNKFSFASSLAACARLGDLHHAKWVHS 189

Query: 169 MMPVKDV----VAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDV 224
           +M    +    +  + ++  Y + G +  +R +F  + + +V  W  M++G+A +     
Sbjct: 190 LMIDSGIELNAILSSALVDVYAKCGDIGTSREVFYSVKRNDVSIWNAMITGFATHGLATE 249

Query: 225 ARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAM----PVKPVVA-CNEMI 275
           A ++F  M       + +++  +L   +H G + E  E+F  M     ++P +     M+
Sbjct: 250 AIRVFSEMEAEHVSPDSITFLGLLTTCSHCGLLEEGKEYFGLMSRRFSIQPKLEHYGAMV 309

Query: 276 MGFGFDGDVDRAKAVFEKMR-ERDDGTWSAMI 306
              G  G V  A  + E M  E D   W +++
Sbjct: 310 DLLGRAGRVKEAYELIESMPIEPDVVIWRSLL 341



 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 103/242 (42%), Gaps = 16/242 (6%)

Query: 194 ARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVM-----PERNEVSWTAMLMGYT 248
           A+ +      +NV+TW  M+ GY RN + + A K  + M      + N+ S+ + L    
Sbjct: 117 AKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKALKNMLSFTDIKPNKFSFASSLAACA 176

Query: 249 HSGRMREASEFFDAMPVKPVVACNEMIMGFGFD-----GDVDRAKAVFEKMRERDDGTWS 303
             G +  A ++  ++ +   +  N ++     D     GD+  ++ VF  ++  D   W+
Sbjct: 177 RLGDLHHA-KWVHSLMIDSGIELNAILSSALVDVYAKCGDIGTSREVFYSVKRNDVSIWN 235

Query: 304 AMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRS 363
           AMI  +   G   EA+ +F+ M+ E  + +                 + G++    + R 
Sbjct: 236 AMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTTCSHCGLLEEGKEYFGLMSRR 295

Query: 364 -EFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLK-DVVMWNSMITG---YSQHGLGEE 418
                 L    A++ +  + G +  A  +    P++ DVV+W S+++    Y    LGE 
Sbjct: 296 FSIQPKLEHYGAMVDLLGRAGRVKEAYELIESMPIEPDVVIWRSLLSSSRTYKNPELGEI 355

Query: 419 AL 420
           A+
Sbjct: 356 AI 357



 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 80/170 (47%), Gaps = 14/170 (8%)

Query: 375 LITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDM-CLSGVPP 433
           +I   +K G+   AK +      ++V+ WN MI GY ++   EEAL   ++M   + + P
Sbjct: 104 IIESLMKIGESGLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKALKNMLSFTDIKP 163

Query: 434 DDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYA----CMVDLLGRAGQVND 489
           +  SF   L+AC+  G +   + +   M     ++ GIE  A     +VD+  + G +  
Sbjct: 164 NKFSFASSLAACARLGDLHHAKWVHSLM-----IDSGIELNAILSSALVDVYAKCGDIGT 218

Query: 490 AVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGP 539
           + E+   +    D  +W +++    TH    LA  A+   +++E ++  P
Sbjct: 219 SREVFYSVK-RNDVSIWNAMITGFATH---GLATEAIRVFSEMEAEHVSP 264



 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 94/211 (44%), Gaps = 23/211 (10%)

Query: 25  ISRYARIGQIENARKVFDET---PHIHRTTSSWNAMVAAYFQAHQPHQA----VTLFETT 77
           I  Y R  Q E A K          I     S+ + +AA  +    H A      + ++ 
Sbjct: 136 IGGYVRNVQYEEALKALKNMLSFTDIKPNKFSFASSLAACARLGDLHHAKWVHSLMIDSG 195

Query: 78  PEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFW 137
            E N +  + +V  + K G +  +R VF ++   +V  W +M+ G+   G   EA R+F 
Sbjct: 196 IELNAILSSALVDVYAKCGDIGTSREVFYSVKRNDVSIWNAMITGFATHGLATEAIRVFS 255

Query: 138 RMPEKNVVSWTVMLGGLLKDSR----VEDARKLFDMMPVKDVV--------AVTNMIGGY 185
            M  ++V   ++   GLL        +E+ ++ F +M  +  +        A+ +++G  
Sbjct: 256 EMEAEHVSPDSITFLGLLTTCSHCGLLEEGKEYFGLMSRRFSIQPKLEHYGAMVDLLG-- 313

Query: 186 CEEGRLEEARALFDEMP-KRNVVTWTTMVSG 215
              GR++EA  L + MP + +VV W +++S 
Sbjct: 314 -RAGRVKEAYELIESMPIEPDVVIWRSLLSS 343


>AT5G13270.1 | Symbols: RARE1 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:4246954-4249212 REVERSE
           LENGTH=752
          Length = 752

 Score =  333 bits (855), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 206/656 (31%), Positives = 341/656 (51%), Gaps = 49/656 (7%)

Query: 81  NIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM- 139
           +++  N ++  + +   + +A ++FD M   N VS T+M+  Y ++G +++A  LF  M 
Sbjct: 117 SVLLQNCVLQMYCECRSLEDADKLFDEMSELNAVSRTTMISAYAEQGILDKAVGLFSGML 176

Query: 140 -----PEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGG----YCEEGR 190
                P  ++  +T +L  L+    ++  R++   +    + + T++  G    Y + G 
Sbjct: 177 ASGDKPPSSM--YTTLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGW 234

Query: 191 LEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHS 250
           L  A+ +FD+M  +  V  T ++ GY +  R   A KLF  +     V W +    +  S
Sbjct: 235 LVGAKRVFDQMAVKKPVACTGLMVGYTQAGRARDALKLFVDLVTEG-VEWDS----FVFS 289

Query: 251 GRMREASEFFDAMPVKPVVACNEMIMGFGFDGDV----------------DRAKAVFEKM 294
             ++  +   +    K + AC   +   G + +V                + A   F+++
Sbjct: 290 VVLKACASLEELNLGKQIHAC---VAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEI 346

Query: 295 RERDDGTWSAMIKVYERKGFELEALGLFARMQREGAA-LNFPXXXXXXXXXXXXXXXDHG 353
           RE +D +WSA+I  Y +     EA+  F  ++ + A+ LN                 + G
Sbjct: 347 REPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNASILNSFTYTSIFQACSVLADCNIG 406

Query: 354 RQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQH 413
            QVHA  ++       Y  SALITMY KCG L  A  +F      D+V W + I+G++ +
Sbjct: 407 GQVHADAIKRSLIGSQYGESALITMYSKCGCLDDANEVFESMDNPDIVAWTAFISGHAYY 466

Query: 414 GLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEH 473
           G   EAL +F  M   G+ P+ ++FI VL+ACS++G V++G+   ++M  KY V P I+H
Sbjct: 467 GNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKHCLDTMLRKYNVAPTIDH 526

Query: 474 YACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLE 533
           Y CM+D+  R+G +++A++ ++ MP EPDA+ W   L  C TH  L+L E+A E+L QL+
Sbjct: 527 YDCMIDIYARSGLLDEALKFMKNMPFEPDAMSWKCFLSGCWTHKNLELGEIAGEELRQLD 586

Query: 534 PKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNC 593
           P++   YVL  ++Y   G+WE+   + + +  R + K    SWI+ + K H F+ GD + 
Sbjct: 587 PEDTAGYVLPFNLYTWAGKWEEAAEMMKLMNERMLKKELSCSWIQEKGKIHRFIVGDKH- 645

Query: 594 HPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDVEEEEKTHSLGYHSEKLAIAYGLLKVP 653
           HP+   I + L+  DG +    +  + +         E+   L  HSE+LAIA+GL+ V 
Sbjct: 646 HPQTQEIYEKLKEFDGFMEGDMFQCNMT---------ERREQLLDHSERLAIAFGLISVH 696

Query: 654 EG--MPIRVMKNLRVCGDCHSAIKLIAKVTGREIIVRDANRFHHFKDGYCSCKDYW 707
                PI+V KNLR C DCH   K ++ VTG EI++RD+ RFHHFK+G CSC DYW
Sbjct: 697 GNAPAPIKVFKNLRACPDCHEFAKHVSLVTGHEIVIRDSRRFHHFKEGKCSCNDYW 752



 Score = 80.5 bits (197), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 105/502 (20%), Positives = 186/502 (37%), Gaps = 100/502 (19%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAM------ 108
           N ++  Y +      A  LF+   E N VS   M+S + + G++ +A  +F  M      
Sbjct: 122 NCVLQMYCECRSLEDADKLFDEMSELNAVSRTTMISAYAEQGILDKAVGLFSGMLASGDK 181

Query: 109 PVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGL----LKDSRVEDAR 164
           P  ++  +T++++  V    ++   ++   +    + S T +  G+    +K   +  A+
Sbjct: 182 PPSSM--YTTLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGWLVGAK 239

Query: 165 KLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMP---------------------- 202
           ++FD M VK  VA T ++ GY + GR  +A  LF ++                       
Sbjct: 240 RVFDQMAVKKPVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKACASLE 299

Query: 203 -----------------KRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLM 245
                            +  V   T +V  Y +    + A + F+ + E N+VSW+A++ 
Sbjct: 300 ELNLGKQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIIS 359

Query: 246 GYTHSGRMREASEFFDAMPVK-----------------PVVA-CN--------------- 272
           GY    +  EA + F ++  K                  V+A CN               
Sbjct: 360 GYCQMSQFEEAVKTFKSLRSKNASILNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLI 419

Query: 273 -------EMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARM 325
                   +I  +   G +D A  VFE M   D   W+A I  +   G   EAL LF +M
Sbjct: 420 GSQYGESALITMYSKCGCLDDANEVFESMDNPDIVAWTAFISGHAYYGNASEALRLFEKM 479

Query: 326 QREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRS-EFDQDLYVASALITMYVKCGD 384
              G   N                 + G+     ++R       +     +I +Y + G 
Sbjct: 480 VSCGMKPNSVTFIAVLTACSHAGLVEQGKHCLDTMLRKYNVAPTIDHYDCMIDIYARSGL 539

Query: 385 LVRAKWIFNRYPLK-DVVMWNSMITGYSQHG---LGEEALNVFRDMCLSGVPPDDISFIG 440
           L  A       P + D + W   ++G   H    LGE A    R +     P D   ++ 
Sbjct: 540 LDEALKFMKNMPFEPDAMSWKCFLSGCWTHKNLELGEIAGEELRQL----DPEDTAGYVL 595

Query: 441 VLSACSYSGKVKEGREIFESMK 462
             +  +++GK +E  E+ + M 
Sbjct: 596 PFNLYTWAGKWEEAAEMMKLMN 617



 Score = 76.6 bits (187), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 148/344 (43%), Gaps = 38/344 (11%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKN 81
           TG ++ Y + G +  A++VFD+   + +  +    MV  Y QA +   A+ LF     + 
Sbjct: 223 TGIVNMYVKCGWLVGAKRVFDQMA-VKKPVACTGLMV-GYTQAGRARDALKLFVDLVTEG 280

Query: 82  IVSWNGMVSGFVKNGMVA--------EARRVFDAMPVRNVVS-WTSMVRGYVQEGNVEEA 132
            V W+  V   V     +        +       + + + VS  T +V  Y++  + E A
Sbjct: 281 -VEWDSFVFSVVLKACASLEELNLGKQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESA 339

Query: 133 ERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLE 192
            R F  + E N VSW+ ++ G  + S+ E+A K F  +  K+     +++  +      +
Sbjct: 340 CRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKN----ASILNSFTYTSIFQ 395

Query: 193 EARALFD---------EMPKRNVVTW----TTMVSGYARNRRVDVARKLFEVMPERNEVS 239
               L D         +  KR+++      + +++ Y++   +D A ++FE M   + V+
Sbjct: 396 ACSVLADCNIGGQVHADAIKRSLIGSQYGESALITMYSKCGCLDDANEVFESMDNPDIVA 455

Query: 240 WTAMLMGYTHSGRMREASEFFDAM---PVKP-VVACNEMIMGFGFDGDVDRAKAVFEKMR 295
           WTA + G+ + G   EA   F+ M    +KP  V    ++      G V++ K   + M 
Sbjct: 456 WTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKHCLDTML 515

Query: 296 ERDD-----GTWSAMIKVYERKGFELEALGLFARMQREGAALNF 334
            + +       +  MI +Y R G   EAL     M  E  A+++
Sbjct: 516 RKYNVAPTIDHYDCMIDIYARSGLLDEALKFMKNMPFEPDAMSW 559



 Score = 76.3 bits (186), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 140/343 (40%), Gaps = 72/343 (20%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKN 81
           T  +  Y +    E+A + F E    +    SW+A+++ Y Q  Q  +AV  F++   KN
Sbjct: 324 TPLVDFYIKCSSFESACRAFQEIREPNDV--SWSAIISGYCQMSQFEEAVKTFKSLRSKN 381

Query: 82  IVSWN----------------------------------------GMVSGFVKNGMVAEA 101
               N                                         +++ + K G + +A
Sbjct: 382 ASILNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQYGESALITMYSKCGCLDDA 441

Query: 102 RRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMP----EKNVVSWTVMLGGLLKD 157
             VF++M   ++V+WT+ + G+   GN  EA RLF +M     + N V++  +L      
Sbjct: 442 NEVFESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHA 501

Query: 158 SRVEDARKLFDMMPVKDVVAVT-----NMIGGYCEEGRLEEARALFDEMP-KRNVVTWTT 211
             VE  +   D M  K  VA T      MI  Y   G L+EA      MP + + ++W  
Sbjct: 502 GLVEQGKHCLDTMLRKYNVAPTIDHYDCMIDIYARSGLLDEALKFMKNMPFEPDAMSWKC 561

Query: 212 MVSGYARNRRVDV----ARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMP--- 264
            +SG   ++ +++      +L ++ PE +   +      YT +G+  EA+E    M    
Sbjct: 562 FLSGCWTHKNLELGEIAGEELRQLDPE-DTAGYVLPFNLYTWAGKWEEAAEMMKLMNERM 620

Query: 265 VKPVVACN---------EMIMGFGFDGDVDRAKAVFEKMRERD 298
           +K  ++C+           I+G   D    + + ++EK++E D
Sbjct: 621 LKKELSCSWIQEKGKIHRFIVG---DKHHPQTQEIYEKLKEFD 660


>AT1G77010.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:28942710-28944797 FORWARD
           LENGTH=695
          Length = 695

 Score =  332 bits (850), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 198/627 (31%), Positives = 314/627 (50%), Gaps = 80/627 (12%)

Query: 28  YARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNG 87
           Y+R G++  AR +FDE P   R   SWN M+  Y  + +   ++  F+  PE++  SWN 
Sbjct: 72  YSRSGKMGIARNLFDEMPD--RNYFSWNTMIEGYMNSGEKGTSLRFFDMMPERDGYSWNV 129

Query: 88  MVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMP-EKNVVS 146
           +VSGF K G ++ ARR+F+AMP ++VV+  S++ GY+  G  EEA RLF  +    + ++
Sbjct: 130 VVSGFAKAGELSVARRLFNAMPEKDVVTLNSLLHGYILNGYAEEALRLFKELNFSADAIT 189

Query: 147 WT---------------------VMLGGLLKDSRVED--------------ARKLFDMMP 171
            T                     +++GG+  DS++                A  + + + 
Sbjct: 190 LTTVLKACAELEALKCGKQIHAQILIGGVECDSKMNSSLVNVYAKCGDLRMASYMLEQIR 249

Query: 172 VKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEV 231
             D  +++ +I GY   GR+ E+R LFD    R V+ W +M+SGY  N     A  LF  
Sbjct: 250 EPDDHSLSALISGYANCGRVNESRGLFDRKSNRCVILWNSMISGYIANNMKMEALVLFNE 309

Query: 232 MPERNE----------------------------------------VSWTAMLMGYTHSG 251
           M  RNE                                        V  + +L  Y+  G
Sbjct: 310 M--RNETREDSRTLAAVINACIGLGFLETGKQMHCHACKFGLIDDIVVASTLLDMYSKCG 367

Query: 252 RMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYER 311
              EA + F  +     +  N MI  +   G +D AK VFE++  +   +W++M   + +
Sbjct: 368 SPMEACKLFSEVESYDTILLNSMIKVYFSCGRIDDAKRVFERIENKSLISWNSMTNGFSQ 427

Query: 312 KGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYV 371
            G  +E L  F +M +     +                 + G QV AR      D D  V
Sbjct: 428 NGCTVETLEYFHQMHKLDLPTDEVSLSSVISACASISSLELGEQVFARATIVGLDSDQVV 487

Query: 372 ASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGV 431
           +S+LI +Y KCG +   + +F+     D V WNSMI+GY+ +G G EA+++F+ M ++G+
Sbjct: 488 SSSLIDLYCKCGFVEHGRRVFDTMVKSDEVPWNSMISGYATNGQGFEAIDLFKKMSVAGI 547

Query: 432 PPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAV 491
            P  I+F+ VL+AC+Y G V+EGR++FESMK  +   P  EH++CMVDLL RAG V +A+
Sbjct: 548 RPTQITFMVVLTACNYCGLVEEGRKLFESMKVDHGFVPDKEHFSCMVDLLARAGYVEEAI 607

Query: 492 EIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKG 551
            +VE+MP + D  +W S+L  C  +    + + A EK+ +LEP+N+  YV LS ++A+ G
Sbjct: 608 NLVEEMPFDVDGSMWSSILRGCVANGYKAMGKKAAEKIIELEPENSVAYVQLSAIFATSG 667

Query: 552 RWEDVEVVREKIKTRSVIKLPGYSWIE 578
            WE   +VR+ ++  +V K PG SW +
Sbjct: 668 DWESSALVRKLMRENNVTKNPGSSWTD 694



 Score =  172 bits (435), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 120/471 (25%), Positives = 214/471 (45%), Gaps = 39/471 (8%)

Query: 82  IVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPE 141
           ++  N ++  + ++G +  AR +FD MP RN  SW +M+ GY+  G    + R F  MPE
Sbjct: 62  VIVANHLLQMYSRSGKMGIARNLFDEMPDRNYFSWNTMIEGYMNSGEKGTSLRFFDMMPE 121

Query: 142 KNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEM 201
           ++  SW V++ G  K   +  AR+LF+ MP KDVV + +++ GY   G  EEA  LF E+
Sbjct: 122 RDGYSWNVVVSGFAKAGELSVARRLFNAMPEKDVVTLNSLLHGYILNGYAEEALRLFKEL 181

Query: 202 P-KRNVVTWTTMVSGYARNRRVDVARKLFEVM----PERNEVSWTAMLMGYTHSGRMREA 256
               + +T TT++   A    +   +++   +     E +    ++++  Y   G +R A
Sbjct: 182 NFSADAITLTTVLKACAELEALKCGKQIHAQILIGGVECDSKMNSSLVNVYAKCGDLRMA 241

Query: 257 SEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFEL 316
           S   + +      + + +I G+   G V+ ++ +F++   R    W++MI  Y     ++
Sbjct: 242 SYMLEQIREPDDHSLSALISGYANCGRVNESRGLFDRKSNRCVILWNSMISGYIANNMKM 301

Query: 317 EALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALI 376
           EAL LF  M+ E    +                 + G+Q+H    +     D+ VAS L+
Sbjct: 302 EALVLFNEMRNETRE-DSRTLAAVINACIGLGFLETGKQMHCHACKFGLIDDIVVASTLL 360

Query: 377 TMYVKCGD-------------------------------LVRAKWIFNRYPLKDVVMWNS 405
            MY KCG                                +  AK +F R   K ++ WNS
Sbjct: 361 DMYSKCGSPMEACKLFSEVESYDTILLNSMIKVYFSCGRIDDAKRVFERIENKSLISWNS 420

Query: 406 MITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKY 465
           M  G+SQ+G   E L  F  M    +P D++S   V+SAC+    ++ G ++F +     
Sbjct: 421 MTNGFSQNGCTVETLEYFHQMHKLDLPTDEVSLSSVISACASISSLELGEQVF-ARATIV 479

Query: 466 QVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTH 516
            ++      + ++DL  + G V     + + M ++ D + W S++    T+
Sbjct: 480 GLDSDQVVSSSLIDLYCKCGFVEHGRRVFDTM-VKSDEVPWNSMISGYATN 529



 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 96/205 (46%), Gaps = 18/205 (8%)

Query: 18  QCTSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETT 77
           Q  S+  I  Y + G +E+ R+VFD    +      WN+M++ Y    Q  +A+ LF+  
Sbjct: 485 QVVSSSLIDLYCKCGFVEHGRRVFD--TMVKSDEVPWNSMISGYATNGQGFEAIDLFKKM 542

Query: 78  PEKNI----VSWNGMVSGFVKNGMVAEARRVFDAMPVRNVV-----SWTSMVRGYVQEGN 128
               I    +++  +++     G+V E R++F++M V +        ++ MV    + G 
Sbjct: 543 SVAGIRPTQITFMVVLTACNYCGLVEEGRKLFESMKVDHGFVPDKEHFSCMVDLLARAGY 602

Query: 129 VEEAERLFWRMP-EKNVVSWTVMLGGLLKDSR----VEDARKLFDMMPVKDVVAVTNMIG 183
           VEEA  L   MP + +   W+ +L G + +       + A K+ ++ P ++ VA   +  
Sbjct: 603 VEEAINLVEEMPFDVDGSMWSSILRGCVANGYKAMGKKAAEKIIELEP-ENSVAYVQLSA 661

Query: 184 GYCEEGRLEEARALFDEMPKRNVVT 208
            +   G  E + AL  ++ + N VT
Sbjct: 662 IFATSGDWESS-ALVRKLMRENNVT 685


>AT1G34160.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:12441393-12443225 FORWARD
           LENGTH=581
          Length = 581

 Score =  327 bits (837), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 186/537 (34%), Positives = 298/537 (55%), Gaps = 24/537 (4%)

Query: 189 GRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWT-----AM 243
           G L  A  +F  +PK     W  ++ G+A +    +A   +  M +++  S       A+
Sbjct: 51  GDLSFAVQIFRYIPKPLTNDWNAIIRGFAGSSHPSLAFSWYRSMLQQSSSSSAICRVDAL 110

Query: 244 LMGYTHSGRMRE-ASEFFDAMPVK--------PVVACNEMIMGFGFDGDVDRAKAVFEKM 294
              +T     R   S   D +  +          + C  ++  +  +GD+  A  +F++M
Sbjct: 111 TCSFTLKACARALCSSAMDQLHCQINRRGLSADSLLCTTLLDAYSKNGDLISAYKLFDEM 170

Query: 295 RERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGR 354
             RD  +W+A+I          EA+ L+ RM+ EG   +                   G 
Sbjct: 171 PVRDVASWNALIAGLVSGNRASEAMELYKRMETEGIRRSEVTVVAALGACSHLGDVKEGE 230

Query: 355 QVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYP-LKDVVMWNSMITGYSQH 413
            +         + ++ V++A I MY KCG + +A  +F ++   K VV WN+MITG++ H
Sbjct: 231 NI----FHGYSNDNVIVSNAAIDMYSKCGFVDKAYQVFEQFTGKKSVVTWNTMITGFAVH 286

Query: 414 GLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEH 473
           G    AL +F  +  +G+ PDD+S++  L+AC ++G V+ G  +F +M CK  VE  ++H
Sbjct: 287 GEAHRALEIFDKLEDNGIKPDDVSYLAALTACRHAGLVEYGLSVFNNMACK-GVERNMKH 345

Query: 474 YACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLE 533
           Y C+VDLL RAG++ +A +I+  M M PD ++W SLLGA   +  +++AE+A  ++ ++ 
Sbjct: 346 YGCVVDLLSRAGRLREAHDIICSMSMIPDPVLWQSLLGASEIYSDVEMAEIASREIKEMG 405

Query: 534 PKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNC 593
             N G +VLLS++YA++GRW+DV  VR+ ++++ V K+PG S+IE +   H F   D + 
Sbjct: 406 VNNDGDFVLLSNVYAAQGRWKDVGRVRDDMESKQVKKIPGLSYIEAKGTIHEFYNSDKS- 464

Query: 594 HPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDVEEEEKTHSLGYHSEKLAIAYGLLKV- 652
           H +   I + ++ +   +R+ GY      VLHD+ EEEK ++L YHSEKLA+AYGL+ + 
Sbjct: 465 HEQWREIYEKIDEIRFKIREDGYVAQTGLVLHDIGEEEKENALCYHSEKLAVAYGLMMMD 524

Query: 653 --PEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIVRDANRFHHFKDGYCSCKDYW 707
              E  P+RV+ NLR+CGDCH   K I+K+  REIIVRD  RFH FKDG CSC+D+W
Sbjct: 525 GADEESPVRVINNLRICGDCHVVFKHISKIYKREIIVRDRVRFHRFKDGSCSCRDFW 581



 Score = 85.9 bits (211), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 95/190 (50%), Gaps = 9/190 (4%)

Query: 88  MVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV--- 144
           ++  + KNG +  A ++FD MPVR+V SW +++ G V      EA  L+ RM  + +   
Sbjct: 150 LLDAYSKNGDLISAYKLFDEMPVRDVASWNALIAGLVSGNRASEAMELYKRMETEGIRRS 209

Query: 145 -VSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMP- 202
            V+    LG       V++   +F      +V+     I  Y + G +++A  +F++   
Sbjct: 210 EVTVVAALGACSHLGDVKEGENIFHGYSNDNVIVSNAAIDMYSKCGFVDKAYQVFEQFTG 269

Query: 203 KRNVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASE 258
           K++VVTW TM++G+A +     A ++F+ + +     ++VS+ A L    H+G +     
Sbjct: 270 KKSVVTWNTMITGFAVHGEAHRALEIFDKLEDNGIKPDDVSYLAALTACRHAGLVEYGLS 329

Query: 259 FFDAMPVKPV 268
            F+ M  K V
Sbjct: 330 VFNNMACKGV 339



 Score = 80.1 bits (196), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 136/311 (43%), Gaps = 16/311 (5%)

Query: 174 DVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMP 233
           D +  T ++  Y + G L  A  LFDEMP R+V +W  +++G     R   A +L++ M 
Sbjct: 143 DSLLCTTLLDAYSKNGDLISAYKLFDEMPVRDVASWNALIAGLVSGNRASEAMELYKRME 202

Query: 234 ----ERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKA 289
                R+EV+  A L   +H G ++E    F       V+  N  I  +   G VD+A  
Sbjct: 203 TEGIRRSEVTVVAALGACSHLGDVKEGENIFHGYSNDNVIVSNAAIDMYSKCGFVDKAYQ 262

Query: 290 VFEKMR-ERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXX 348
           VFE+   ++   TW+ MI  +   G    AL +F +++  G   +               
Sbjct: 263 VFEQFTGKKSVVTWNTMITGFAVHGEAHRALEIFDKLEDNGIKPDDVSYLAALTACRHAG 322

Query: 349 XXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYP-LKDVVMWNSMI 407
             ++G  V   +     ++++     ++ +  + G L  A  I      + D V+W S++
Sbjct: 323 LVEYGLSVFNNMACKGVERNMKHYGCVVDLLSRAGRLREAHDIICSMSMIPDPVLWQSLL 382

Query: 408 TG---YSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCK 464
                YS   + E A    ++M ++    +D  F+ + +  +  G+ K+   + + M+ K
Sbjct: 383 GASEIYSDVEMAEIASREIKEMGVN----NDGDFVLLSNVYAAQGRWKDVGRVRDDMESK 438

Query: 465 YQVE--PGIEH 473
            QV+  PG+ +
Sbjct: 439 -QVKKIPGLSY 448



 Score = 76.6 bits (187), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/323 (21%), Positives = 135/323 (41%), Gaps = 29/323 (8%)

Query: 31  IGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFET-----TPEKNIVSW 85
            G +  A ++F   P     T+ WNA++  +  +  P  A + + +     +    I   
Sbjct: 50  FGDLSFAVQIFRYIPK--PLTNDWNAIIRGFAGSSHPSLAFSWYRSMLQQSSSSSAICRV 107

Query: 86  NGMVSGF-VKNGMVAEARRVFDAMPVR--------NVVSWTSMVRGYVQEGNVEEAERLF 136
           + +   F +K    A      D +  +        + +  T+++  Y + G++  A +LF
Sbjct: 108 DALTCSFTLKACARALCSSAMDQLHCQINRRGLSADSLLCTTLLDAYSKNGDLISAYKLF 167

Query: 137 WRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDV----VAVTNMIGGYCEEGRLE 192
             MP ++V SW  ++ GL+  +R  +A +L+  M  + +    V V   +G     G ++
Sbjct: 168 DEMPVRDVASWNALIAGLVSGNRASEAMELYKRMETEGIRRSEVTVVAALGACSHLGDVK 227

Query: 193 EARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMP-ERNEVSWTAMLMGYTHSG 251
           E   +F      NV+     +  Y++   VD A ++FE    +++ V+W  M+ G+   G
Sbjct: 228 EGENIFHGYSNDNVIVSNAAIDMYSKCGFVDKAYQVFEQFTGKKSVVTWNTMITGFAVHG 287

Query: 252 RMREASEFFDAMP---VKP-VVACNEMIMGFGFDGDVDRAKAVFEKMR----ERDDGTWS 303
               A E FD +    +KP  V+    +      G V+   +VF  M     ER+   + 
Sbjct: 288 EAHRALEIFDKLEDNGIKPDDVSYLAALTACRHAGLVEYGLSVFNNMACKGVERNMKHYG 347

Query: 304 AMIKVYERKGFELEALGLFARMQ 326
            ++ +  R G   EA  +   M 
Sbjct: 348 CVVDLLSRAGRLREAHDIICSMS 370



 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 119/276 (43%), Gaps = 17/276 (6%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPV---- 110
             ++ AY +      A  LF+  P +++ SWN +++G V     +EA  ++  M      
Sbjct: 148 TTLLDAYSKNGDLISAYKLFDEMPVRDVASWNALIAGLVSGNRASEAMELYKRMETEGIR 207

Query: 111 RNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMM 170
           R+ V+  + +      G+V+E E +F      NV+     +    K   V+ A ++F+  
Sbjct: 208 RSEVTVVAALGACSHLGDVKEGENIFHGYSNDNVIVSNAAIDMYSKCGFVDKAYQVFEQF 267

Query: 171 P-VKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNV----VTWTTMVSGYARNRRVDVA 225
              K VV    MI G+   G    A  +FD++    +    V++   ++       V+  
Sbjct: 268 TGKKSVVTWNTMITGFAVHGEAHRALEIFDKLEDNGIKPDDVSYLAALTACRHAGLVEYG 327

Query: 226 RKLFEVMP----ERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFG-F 280
             +F  M     ERN   +  ++   + +GR+REA +   +M + P     + ++G    
Sbjct: 328 LSVFNNMACKGVERNMKHYGCVVDLLSRAGRLREAHDIICSMSMIPDPVLWQSLLGASEI 387

Query: 281 DGDVDRAKAVFEKMRE---RDDGTWSAMIKVYERKG 313
             DV+ A+    +++E    +DG +  +  VY  +G
Sbjct: 388 YSDVEMAEIASREIKEMGVNNDGDFVLLSNVYAAQG 423



 Score = 62.8 bits (151), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 63/295 (21%), Positives = 113/295 (38%), Gaps = 50/295 (16%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTL-------- 73
           T  +  Y++ G + +A K+FDE P   R  +SWNA++A     ++  +A+ L        
Sbjct: 148 TTLLDAYSKNGDLISAYKLFDEMPV--RDVASWNALIAGLVSGNRASEAMELYKRMETEG 205

Query: 74  ---------------------------FETTPEKNIVSWNGMVSGFVKNGMVAEARRVFD 106
                                      F      N++  N  +  + K G V +A +VF+
Sbjct: 206 IRRSEVTVVAALGACSHLGDVKEGENIFHGYSNDNVIVSNAAIDMYSKCGFVDKAYQVFE 265

Query: 107 AMP-VRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV----VSWTVMLGGLLKDSRVE 161
                ++VV+W +M+ G+   G    A  +F ++ +  +    VS+   L        VE
Sbjct: 266 QFTGKKSVVTWNTMITGFAVHGEAHRALEIFDKLEDNGIKPDDVSYLAALTACRHAGLVE 325

Query: 162 DARKLFDMMPVKDVVAVTNMIGGYCE----EGRLEEARALFDEMPK-RNVVTWTTMVSG- 215
               +F+ M  K V       G   +     GRL EA  +   M    + V W +++   
Sbjct: 326 YGLSVFNNMACKGVERNMKHYGCVVDLLSRAGRLREAHDIICSMSMIPDPVLWQSLLGAS 385

Query: 216 --YARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPV 268
             Y+     ++A +  + M   N+  +  +   Y   GR ++     D M  K V
Sbjct: 386 EIYSDVEMAEIASREIKEMGVNNDGDFVLLSNVYAAQGRWKDVGRVRDDMESKQV 440


>AT2G45350.1 | Symbols: CRR4 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:18694816-18696657 REVERSE
           LENGTH=613
          Length = 613

 Score =  325 bits (832), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 187/537 (34%), Positives = 289/537 (53%), Gaps = 27/537 (5%)

Query: 54  WNAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNV 113
           WNA++ ++     P QA+ L     E               NG+  +    F    V   
Sbjct: 89  WNAVIKSHSHGKDPRQALLLLCLMLE---------------NGVSVDK---FSLSLVLKA 130

Query: 114 VSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVK 173
            S    V+G +Q     +   L+  +  +N      ++G  LK   +  +R++FD MP +
Sbjct: 131 CSRLGFVKGGMQIHGFLKKTGLWSDLFLQNC-----LIGLYLKCGCLGLSRQMFDRMPKR 185

Query: 174 DVVAVTNMIGGYCEEGRLEEARALFDEMPK--RNVVTWTTMVSGYARNRR-VDVARKLFE 230
           D V+  +MI GY + G +  AR LFD MP   +N+++W +M+SGYA+    VD+A KLF 
Sbjct: 186 DSVSYNSMIDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFA 245

Query: 231 VMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAV 290
            MPE++ +SW +M+ GY   GR+ +A   FD MP + VV    MI G+   G V  AK +
Sbjct: 246 DMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTL 305

Query: 291 FEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAAL-NFPXXXXXXXXXXXXXX 349
           F++M  RD   +++M+  Y +  + +EAL +F+ M++E   L +                
Sbjct: 306 FDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGR 365

Query: 350 XDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITG 409
                 +H  +V  +F     +  ALI MY KCG +  A  +F     K +  WN+MI G
Sbjct: 366 LSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGG 425

Query: 410 YSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEP 469
            + HGLGE A ++   +    + PDDI+F+GVL+ACS+SG VKEG   FE M+ K+++EP
Sbjct: 426 LAIHGLGESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEP 485

Query: 470 GIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKL 529
            ++HY CMVD+L R+G +  A  ++E+MP+EP+ ++W + L AC  H + +  E+  + L
Sbjct: 486 RLQHYGCMVDILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTACSHHKEFETGELVAKHL 545

Query: 530 AQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMF 586
                 N   YVLLS+MYAS G W+DV  VR  +K R + K+PG SWIE++ + H F
Sbjct: 546 ILQAGYNPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWIELDGRVHEF 602



 Score =  127 bits (318), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 157/333 (47%), Gaps = 51/333 (15%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQ-AVTLFETTPEKNIV 83
           I  Y + G I +AR++FD  P   +   SWN+M++ Y Q       A  LF   PEK+++
Sbjct: 194 IDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLI 253

Query: 84  SWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKN 143
           SWN M+ G+VK+G + +A+ +FD MP R+VV+W +M+ GY + G V  A+ LF +MP ++
Sbjct: 254 SWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRD 313

Query: 144 VVSWTVMLGGLLKDSRVEDARKLFD-------MMPVKDVVAV------------------ 178
           VV++  M+ G +++    +A ++F        ++P    + +                  
Sbjct: 314 VVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMH 373

Query: 179 ---------------TNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARN---- 219
                            +I  Y + G ++ A  +F+ +  +++  W  M+ G A +    
Sbjct: 374 LYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGE 433

Query: 220 RRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFG 279
              D+  ++  +  + +++++  +L   +HSG ++E    F+ M  K  +       G  
Sbjct: 434 SAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCM 493

Query: 280 FD-----GDVDRAKAVFEKMR-ERDDGTWSAMI 306
            D     G ++ AK + E+M  E +D  W   +
Sbjct: 494 VDILSRSGSIELAKNLIEEMPVEPNDVIWRTFL 526



 Score = 66.6 bits (161), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 112/247 (45%), Gaps = 22/247 (8%)

Query: 353 GRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQ 412
           G Q+H  L ++    DL++ + LI +Y+KCG L  ++ +F+R P +D V +NSMI GY +
Sbjct: 140 GMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVK 199

Query: 413 HGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIE 472
            GL   A  +F  M     P +  + I   S  S   +  +G +I   +      E  + 
Sbjct: 200 CGLIVSARELFDLM-----PMEMKNLISWNSMISGYAQTSDGVDIASKLFADMP-EKDLI 253

Query: 473 HYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQL 532
            +  M+D   + G++ DA  + + MP   D + W +++     + KL     A     Q+
Sbjct: 254 SWNSMIDGYVKHGRIEDAKGLFDVMP-RRDVVTWATMIDG---YAKLGFVHHAKTLFDQM 309

Query: 533 EPKNAGPY-VLLSHMYASKGRWEDVEVVREKIK--------TRSVIKLPGYSWIEVEKKA 583
             ++   Y  +++    +K   E +E+  +  K        T  VI LP  + +    KA
Sbjct: 310 PHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKA 369

Query: 584 ---HMFV 587
              H+++
Sbjct: 370 IDMHLYI 376


>AT3G29230.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:11188803-11190605 FORWARD
           LENGTH=600
          Length = 600

 Score =  320 bits (819), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 180/519 (34%), Positives = 285/519 (54%), Gaps = 13/519 (2%)

Query: 101 ARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRV 160
           A RVF+ +   NV    S++R + Q     +A  +F  M    + +       LLK    
Sbjct: 70  AVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSG 129

Query: 161 EDARKLFDMMP--------VKDVVAVTNMIGGYCEEGRL--EEARALFDEMPKRNVVTWT 210
           +    +  MM           D+     +I  Y   G L   +A  LF++M +R+ V+W 
Sbjct: 130 QSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWN 189

Query: 211 TMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVA 270
           +M+ G  +   +  AR+LF+ MP+R+ +SW  ML GY     M +A E F+ MP +  V+
Sbjct: 190 SMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMPERNTVS 249

Query: 271 CNEMIMGFGFDGDVDRAKAVFEKMR--ERDDGTWSAMIKVYERKGFELEALGLFARMQRE 328
            + M+MG+   GD++ A+ +F+KM    ++  TW+ +I  Y  KG   EA  L  +M   
Sbjct: 250 WSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVAS 309

Query: 329 GAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRA 388
           G   +                   G ++H+ L RS    + YV +AL+ MY KCG+L +A
Sbjct: 310 GLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKA 369

Query: 389 KWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYS 448
             +FN  P KD+V WN+M+ G   HG G+EA+ +F  M   G+ PD ++FI VL +C+++
Sbjct: 370 FDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHA 429

Query: 449 GKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGS 508
           G + EG + F SM+  Y + P +EHY C+VDLLGR G++ +A+++V+ MPMEP+ ++WG+
Sbjct: 430 GLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGA 489

Query: 509 LLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSV 568
           LLGACR H ++D+A+  ++ L +L+P + G Y LLS++YA+   WE V  +R K+K+  V
Sbjct: 490 LLGACRMHNEVDIAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGV 549

Query: 569 IKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERL 607
            K  G S +E+E   H F   D + HP+   I +ML  L
Sbjct: 550 EKPSGASSVELEDGIHEFTVFDKS-HPKSDQIYQMLGSL 587



 Score =  149 bits (376), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 90/272 (33%), Positives = 147/272 (54%), Gaps = 14/272 (5%)

Query: 70  AVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNV 129
           A+ LFE   E++ VSWN M+ G VK G + +ARR+FD MP R+++SW +M+ GY +   +
Sbjct: 173 AMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREM 232

Query: 130 EEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPV--KDVVAVTNMIGGYCE 187
            +A  LF +MPE+N VSW+ M+ G  K   +E AR +FD MP+  K+VV  T +I GY E
Sbjct: 233 SKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAE 292

Query: 188 EGRLEEARALFDEMP----KRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVS---- 239
           +G L+EA  L D+M     K +     ++++    +  + +  ++  ++   N  S    
Sbjct: 293 KGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYV 352

Query: 240 WTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRER-- 297
             A+L  Y   G +++A + F+ +P K +V+ N M+ G G  G    A  +F +MR    
Sbjct: 353 LNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGI 412

Query: 298 --DDGTWSAMIKVYERKGFELEALGLFARMQR 327
             D  T+ A++      G   E +  F  M++
Sbjct: 413 RPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEK 444



 Score =  133 bits (335), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 97/359 (27%), Positives = 170/359 (47%), Gaps = 59/359 (16%)

Query: 25  ISRYARIGQIENARKVFDET--PHIHRTTSSWNAMVAAYFQAHQPHQAVTLFE------- 75
           IS  +   Q   A +VF++   P++H      N+++ A+ Q  QP+QA  +F        
Sbjct: 58  ISALSLCRQTNLAVRVFNQVQEPNVHLC----NSLIRAHAQNSQPYQAFFVFSEMQRFGL 113

Query: 76  -----TTP---------------------------EKNIVSWNGMVSGFVKNGM--VAEA 101
                T P                             +I   N ++  + + G   V +A
Sbjct: 114 FADNFTYPFLLKACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDA 173

Query: 102 RRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVE 161
            ++F+ M  R+ VSW SM+ G V+ G + +A RLF  MP+++++SW  ML G  +   + 
Sbjct: 174 MKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREMS 233

Query: 162 DARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEM--PKRNVVTWTTMVSGYARN 219
            A +LF+ MP ++ V+ + M+ GY + G +E AR +FD+M  P +NVVTWT +++GYA  
Sbjct: 234 KAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEK 293

Query: 220 RRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMI 275
             +  A +L + M       +  +  ++L   T SG +         +  +  +  N  +
Sbjct: 294 GLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILK-RSNLGSNAYV 352

Query: 276 MGFGFD-----GDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREG 329
           +    D     G++ +A  VF  + ++D  +W+ M+      G   EA+ LF+RM+REG
Sbjct: 353 LNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREG 411



 Score = 66.2 bits (160), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 82/161 (50%), Gaps = 4/161 (2%)

Query: 354 RQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQH 413
           +Q+HA+++R    +DL++A  LI+    C     A  +FN+    +V + NS+I  ++Q+
Sbjct: 36  KQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNVHLCNSLIRAHAQN 95

Query: 414 GLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEH 473
               +A  VF +M   G+  D+ ++  +L ACS    +   + +   ++ K  +   I  
Sbjct: 96  SQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIE-KLGLSSDIYV 154

Query: 474 YACMVDLLGRAG--QVNDAVEIVEKMPMEPDAIVWGSLLGA 512
              ++D   R G   V DA+++ EKM  E D + W S+LG 
Sbjct: 155 PNALIDCYSRCGGLGVRDAMKLFEKMS-ERDTVSWNSMLGG 194


>AT4G15720.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:8949569-8951419 FORWARD
           LENGTH=616
          Length = 616

 Score =  318 bits (815), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 191/558 (34%), Positives = 288/558 (51%), Gaps = 59/558 (10%)

Query: 205 NVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAM- 263
           +  T   +V  Y + + ++ ARKLF+ M E N VSWT+++ GY   G+ + A   F  M 
Sbjct: 63  DTFTVNHLVISYVKLKEINTARKLFDEMCEPNVVSWTSVISGYNDMGKPQNALSMFQKMH 122

Query: 264 ---PVKP------------------------------------VVACNEMIMGFGFDGDV 284
              PV P                                    +V  + ++  +G   DV
Sbjct: 123 EDRPVPPNEYTFASVFKACSALAESRIGKNIHARLEISGLRRNIVVSSSLVDMYGKCNDV 182

Query: 285 DRAKAVFEKM--RERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXX 342
           + A+ VF+ M    R+  +W++MI  Y +     EA+ LF       AAL          
Sbjct: 183 ETARRVFDSMIGYGRNVVSWTSMITAYAQNARGHEAIELFRSFN---AALTSDRANQFML 239

Query: 343 XXXXXXXXDHGRQ-----VHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPL 397
                     GR       H  + R  ++ +  VA++L+ MY KCG L  A+ IF R   
Sbjct: 240 ASVISACSSLGRLQWGKVAHGLVTRGGYESNTVVATSLLDMYAKCGSLSCAEKIFLRIRC 299

Query: 398 KDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREI 457
             V+ + SMI   ++HGLGE A+ +F +M    + P+ ++ +GVL ACS+SG V EG E 
Sbjct: 300 HSVISYTSMIMAKAKHGLGEAAVKLFDEMVAGRINPNYVTLLGVLHACSHSGLVNEGLEY 359

Query: 458 FESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPM--EPDAIVWGSLLGACRT 515
              M  KY V P   HY C+VD+LGR G+V++A E+ + + +  E  A++WG+LL A R 
Sbjct: 360 LSLMAEKYGVVPDSRHYTCVVDMLGRFGRVDEAYELAKTIEVGAEQGALLWGALLSAGRL 419

Query: 516 HMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYS 575
           H ++++   A ++L Q   +    Y+ LS+ YA  G WED E +R ++K    +K    S
Sbjct: 420 HGRVEIVSEASKRLIQSNQQVTSAYIALSNAYAVSGGWEDSESLRLEMKRSGNVKERACS 479

Query: 576 WIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGY------SPDHSFVLHDVEE 629
           WIE +   ++F  GD +C  E   I + L+ L+  +++ G+          S V  DV+E
Sbjct: 480 WIENKDSVYVFHAGDLSC-DESGEIERFLKDLEKRMKERGHRGSSSMITTSSSVFVDVDE 538

Query: 630 EEKTHSLGYHSEKLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIVRD 689
           E K   +  H E+LA+AYGLL +P G  IR+M NLR+C DCH A KLI+++  REI+VRD
Sbjct: 539 EAKDEMVSLHCERLALAYGLLHLPAGSTIRIMNNLRMCRDCHEAFKLISEIVEREIVVRD 598

Query: 690 ANRFHHFKDGYCSCKDYW 707
            NRFH FK+G C+C+DYW
Sbjct: 599 VNRFHCFKNGSCTCRDYW 616



 Score = 78.6 bits (192), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 121/259 (46%), Gaps = 27/259 (10%)

Query: 28  YARIGQIENARKVFDET--PHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVSW 85
           Y ++ +I  ARK+FDE   P++     SW ++++ Y    +P  A+++F+   E   V  
Sbjct: 74  YVKLKEINTARKLFDEMCEPNV----VSWTSVISGYNDMGKPQNALSMFQKMHEDRPVPP 129

Query: 86  N--GMVSGFVKNGMVAEAR-------RVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLF 136
           N     S F     +AE+R       R+  +   RN+V  +S+V  Y +  +VE A R+F
Sbjct: 130 NEYTFASVFKACSALAESRIGKNIHARLEISGLRRNIVVSSSLVDMYGKCNDVETARRVF 189

Query: 137 WRMP--EKNVVSWTVMLGGLLKDSRVEDARKLFDMMPV------KDVVAVTNMIGGYCEE 188
             M    +NVVSWT M+    +++R  +A +LF            +   + ++I      
Sbjct: 190 DSMIGYGRNVVSWTSMITAYAQNARGHEAIELFRSFNAALTSDRANQFMLASVISACSSL 249

Query: 189 GRLEEARALFDEMPK----RNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAML 244
           GRL+  +     + +     N V  T+++  YA+   +  A K+F  +   + +S+T+M+
Sbjct: 250 GRLQWGKVAHGLVTRGGYESNTVVATSLLDMYAKCGSLSCAEKIFLRIRCHSVISYTSMI 309

Query: 245 MGYTHSGRMREASEFFDAM 263
           M     G    A + FD M
Sbjct: 310 MAKAKHGLGEAAVKLFDEM 328



 Score = 75.9 bits (185), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 125/264 (47%), Gaps = 27/264 (10%)

Query: 86  NGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM------ 139
           N +V  +VK   +  AR++FD M   NVVSWTS++ GY   G  + A  +F +M      
Sbjct: 68  NHLVISYVKLKEINTARKLFDEMCEPNVVSWTSVISGYNDMGKPQNALSMFQKMHEDRPV 127

Query: 140 -PEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPV----KDVVAVTNMIGGYCEEGRLEEA 194
            P +   +        L +SR+   + +   + +    +++V  ++++  Y +   +E A
Sbjct: 128 PPNEYTFASVFKACSALAESRI--GKNIHARLEISGLRRNIVVSSSLVDMYGKCNDVETA 185

Query: 195 RALFDEMP--KRNVVTWTTMVSGYARNRRVDVARKLFE-----VMPER-NEVSWTAMLMG 246
           R +FD M    RNVV+WT+M++ YA+N R   A +LF      +  +R N+    +++  
Sbjct: 186 RRVFDSMIGYGRNVVSWTSMITAYAQNARGHEAIELFRSFNAALTSDRANQFMLASVISA 245

Query: 247 YTHSGRMREASEFFDAMP-----VKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGT 301
            +  GR++        +         VVA + + M +   G +  A+ +F ++R     +
Sbjct: 246 CSSLGRLQWGKVAHGLVTRGGYESNTVVATSLLDM-YAKCGSLSCAEKIFLRIRCHSVIS 304

Query: 302 WSAMIKVYERKGFELEALGLFARM 325
           +++MI    + G    A+ LF  M
Sbjct: 305 YTSMIMAKAKHGLGEAAVKLFDEM 328



 Score = 75.9 bits (185), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 116/266 (43%), Gaps = 34/266 (12%)

Query: 21  STGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFE----- 75
           S+  +  Y +   +E AR+VFD      R   SW +M+ AY Q  + H+A+ LF      
Sbjct: 169 SSSLVDMYGKCNDVETARRVFDSMIGYGRNVVSWTSMITAYAQNARGHEAIELFRSFNAA 228

Query: 76  -TTPEKNIVSWNGMVS----------GFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYV 124
            T+   N      ++S          G V +G+V   R  +++    N V  TS++  Y 
Sbjct: 229 LTSDRANQFMLASVISACSSLGRLQWGKVAHGLV--TRGGYES----NTVVATSLLDMYA 282

Query: 125 QEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDV----VAVTN 180
           + G++  AE++F R+   +V+S+T M+    K    E A KLFD M    +    V +  
Sbjct: 283 KCGSLSCAEKIFLRIRCHSVISYTSMIMAKAKHGLGEAAVKLFDEMVAGRINPNYVTLLG 342

Query: 181 MIGGYCEEGRLEEARALFDEMPKRNVVT-----WTTMVSGYARNRRVDVARKL---FEVM 232
           ++      G + E       M ++  V      +T +V    R  RVD A +L    EV 
Sbjct: 343 VLHACSHSGLVNEGLEYLSLMAEKYGVVPDSRHYTCVVDMLGRFGRVDEAYELAKTIEVG 402

Query: 233 PERNEVSWTAMLMGYTHSGRMREASE 258
            E+  + W A+L      GR+   SE
Sbjct: 403 AEQGALLWGALLSAGRLHGRVEIVSE 428



 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 84/172 (48%), Gaps = 7/172 (4%)

Query: 356 VHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGL 415
           +H   ++  F  D +  + L+  YVK  ++  A+ +F+     +VV W S+I+GY+  G 
Sbjct: 51  LHTLTLKLGFASDTFTVNHLVISYVKLKEINTARKLFDEMCEPNVVSWTSVISGYNDMGK 110

Query: 416 GEEALNVFRDMCLS-GVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHY 474
            + AL++F+ M     VPP++ +F  V  ACS   + + G+ I   ++    +   I   
Sbjct: 111 PQNALSMFQKMHEDRPVPPNEYTFASVFKACSALAESRIGKNIHARLEIS-GLRRNIVVS 169

Query: 475 ACMVDLLGRAGQVNDAVEIVEKM-PMEPDAIVWGSLLGA----CRTHMKLDL 521
           + +VD+ G+   V  A  + + M     + + W S++ A     R H  ++L
Sbjct: 170 SSLVDMYGKCNDVETARRVFDSMIGYGRNVVSWTSMITAYAQNARGHEAIEL 221


>AT3G47530.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:17517382-17519157 REVERSE
           LENGTH=591
          Length = 591

 Score =  318 bits (814), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 162/426 (38%), Positives = 255/426 (59%), Gaps = 6/426 (1%)

Query: 287 AKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFP---XXXXXXXX 343
           A  VF+++ +RD  +W+ +   Y R     + L LF +M+ +      P           
Sbjct: 167 ACKVFDEIPKRDTVSWNVLFSCYLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQA 226

Query: 344 XXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMW 403
                  D G+QVH  +  +     L +++ L++MY +CG + +A  +F     ++VV W
Sbjct: 227 CANLGALDFGKQVHDFIDENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSW 286

Query: 404 NSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKC 463
            ++I+G + +G G+EA+  F +M   G+ P++ +  G+LSACS+SG V EG   F+ M+ 
Sbjct: 287 TALISGLAMNGFGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRS 346

Query: 464 -KYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLA 522
            +++++P + HY C+VDLLGRA  ++ A  +++ M M+PD+ +W +LLGACR H  ++L 
Sbjct: 347 GEFKIKPNLHHYGCVVDLLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGDVELG 406

Query: 523 EVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKK 582
           E  +  L +L+ + AG YVLL + Y++ G+WE V  +R  +K + +   PG S IE++  
Sbjct: 407 ERVISHLIELKAEEAGDYVLLLNTYSTVGKWEKVTELRSLMKEKRIHTKPGCSAIELQGT 466

Query: 583 AHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDVE-EEEKTHSLGYHSE 641
            H F+  D+  HP +  I KML  ++  L+ AGY  + +  LH++E EEEK ++L YHSE
Sbjct: 467 VHEFI-VDDVSHPRKEEIYKMLAEINQQLKIAGYVAEITSELHNLESEEEKGYALRYHSE 525

Query: 642 KLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIVRDANRFHHFKDGYC 701
           KLAIA+G+L  P G  IRV KNLR C DCH+  K ++ V  R +IVRD +RFHHFK G C
Sbjct: 526 KLAIAFGILVTPPGTTIRVTKNLRTCVDCHNFAKFVSDVYDRIVIVRDRSRFHHFKGGSC 585

Query: 702 SCKDYW 707
           SC D+W
Sbjct: 586 SCNDFW 591



 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 126/288 (43%), Gaps = 28/288 (9%)

Query: 34  IENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGF- 92
           I  + +VF +   ++ T S  N M+ A+  +  P +   LF +    + +  N + S F 
Sbjct: 62  INYSCRVFSQ--RLNPTLSHCNTMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFA 119

Query: 93  ----VKNGMVAEAR----RVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV 144
               +K+G +        ++F    + + +  T+++  Y    N  +A ++F  +P+++ 
Sbjct: 120 LKCCIKSGDLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDT 179

Query: 145 VSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYC--------EEGRLEEARA 196
           VSW V+    L++ R  D   LFD M   DV       G  C          G L+  + 
Sbjct: 180 VSWNVLFSCYLRNKRTRDVLVLFDKMK-NDVDGCVKPDGVTCLLALQACANLGALDFGKQ 238

Query: 197 LFDEMPKRNVV----TWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGR 252
           + D + +  +        T+VS Y+R   +D A ++F  M ERN VSWTA++ G   +G 
Sbjct: 239 VHDFIDENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGF 298

Query: 253 MREASEFFDAMPVKPVVACNEMIMGF----GFDGDVDRAKAVFEKMRE 296
            +EA E F+ M    +    + + G        G V      F++MR 
Sbjct: 299 GKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRS 346



 Score = 67.8 bits (164), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 105/249 (42%), Gaps = 20/249 (8%)

Query: 103 RVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEK-----NVVSWTVMLGGLLKD 157
           RVF       +    +M+R +       E  RLF  +        N +S +  L   +K 
Sbjct: 67  RVFSQRLNPTLSHCNTMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKCCIKS 126

Query: 158 SRV----EDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMV 213
             +    +   K+F    + D + +T ++  Y       +A  +FDE+PKR+ V+W  + 
Sbjct: 127 GDLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLF 186

Query: 214 SGYARNRRVDVARKLFEVMPER-------NEVSWTAMLMGYTHSGRM---REASEFFDAM 263
           S Y RN+R      LF+ M          + V+    L    + G +   ++  +F D  
Sbjct: 187 SCYLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDEN 246

Query: 264 PVKPVV-ACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLF 322
            +   +   N ++  +   G +D+A  VF  MRER+  +W+A+I      GF  EA+  F
Sbjct: 247 GLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAF 306

Query: 323 ARMQREGAA 331
             M + G +
Sbjct: 307 NEMLKFGIS 315


>AT4G21300.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:11336479-11339052 FORWARD
           LENGTH=857
          Length = 857

 Score =  317 bits (812), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 212/681 (31%), Positives = 323/681 (47%), Gaps = 101/681 (14%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVR--- 111
           ++++ AY +  +      LF+   +K+ V WN M++G+ K G +    + F  M +    
Sbjct: 177 SSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQIS 236

Query: 112 -NVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDS---------RVE 161
            N V++  ++     +  ++   +L        VV   V   G +K+S         R +
Sbjct: 237 PNAVTFDCVLSVCASKLLIDLGVQL-----HGLVVVSGVDFEGSIKNSLLSMYSKCGRFD 291

Query: 162 DARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNV----VTWTTM----- 212
           DA KLF MM   D V    MI GY + G +EE+   F EM    V    +T++++     
Sbjct: 292 DASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVS 351

Query: 213 ------------------------------VSGYARNRRVDVARKLFEVMPERNEVSWTA 242
                                         +  Y + R V +A+ +F      + V +TA
Sbjct: 352 KFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTA 411

Query: 243 MLMGYTHSGRMREASEFFDAMPVKPVVACNEMIM--------------------GF---- 278
           M+ GY H+G   ++ E F  + VK  ++ NE+ +                    GF    
Sbjct: 412 MISGYLHNGLYIDSLEMFRWL-VKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKK 470

Query: 279 GFD----------------GDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLF 322
           GFD                G ++ A  +FE++ +RD  +W++MI    +      A+ +F
Sbjct: 471 GFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIF 530

Query: 323 ARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKC 382
            +M   G   +                   G+ +H  +++     D+Y  S LI MY KC
Sbjct: 531 RQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKC 590

Query: 383 GDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMC-LSGVPPDDISFIGV 441
           G+L  A  +F     K++V WNS+I     HG  +++L +F +M   SG+ PD I+F+ +
Sbjct: 591 GNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEI 650

Query: 442 LSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEP 501
           +S+C + G V EG   F SM   Y ++P  EHYAC+VDL GRAG++ +A E V+ MP  P
Sbjct: 651 ISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPP 710

Query: 502 DAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVRE 561
           DA VWG+LLGACR H  ++LAEVA  KL  L+P N+G YVL+S+ +A+   WE V  VR 
Sbjct: 711 DAGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRS 770

Query: 562 KIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHS 621
            +K R V K+PGYSWIE+ K+ H+FV GD N HPE   I  +L  L G LR  GY P   
Sbjct: 771 LMKEREVQKIPGYSWIEINKRTHLFVSGDVN-HPESSHIYSLLNSLLGELRLEGYIPQPY 829

Query: 622 FVLHDVEEEEKTHSLGYHSEK 642
             LH  E   K + +    EK
Sbjct: 830 LPLHP-ESSRKVYPVSRFIEK 849



 Score =  154 bits (389), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 132/549 (24%), Positives = 237/549 (43%), Gaps = 61/549 (11%)

Query: 28  YARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTL------FETTPEKN 81
           YA  G   +  K+F        +   WN++++++ +    +QA+        F  +P+  
Sbjct: 80  YAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPD-- 137

Query: 82  IVSWNGMVSGFV--KN--GMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFW 137
           + ++  +V   V  KN  G+   +  V       N    +S+++ Y++ G ++   +LF 
Sbjct: 138 VSTFPCLVKACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFD 197

Query: 138 RMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVV--AVT-NMIGGYCEEGRLEEA 194
           R+ +K+ V W VML G  K   ++   K F +M +  +   AVT + +   C    L + 
Sbjct: 198 RVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDL 257

Query: 195 RALFDEMPKRNVVTW-----TTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTH 249
                 +   + V +      +++S Y++  R D A KLF +M   + V+W  M+ GY  
Sbjct: 258 GVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQ 317

Query: 250 SGRMREASEFF----------DAMPVKPVVA----------CNEM---IMGFGFDGD--- 283
           SG M E+  FF          DA+    ++           C ++   IM      D   
Sbjct: 318 SGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFL 377

Query: 284 -------------VDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGA 330
                        V  A+ +F +    D   ++AMI  Y   G  +++L +F  + +   
Sbjct: 378 TSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKI 437

Query: 331 ALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKW 390
           + N                   GR++H  +++  FD    +  A+I MY KCG +  A  
Sbjct: 438 SPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYE 497

Query: 391 IFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGK 450
           IF R   +D+V WNSMIT  +Q      A+++FR M +SG+  D +S    LSAC+    
Sbjct: 498 IFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPS 557

Query: 451 VKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLL 510
              G+ I   M  K+ +   +   + ++D+  + G +  A+ + + M  E + + W S++
Sbjct: 558 ESFGKAIHGFM-IKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMK-EKNIVSWNSII 615

Query: 511 GACRTHMKL 519
            AC  H KL
Sbjct: 616 AACGNHGKL 624



 Score = 95.9 bits (237), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 124/279 (44%), Gaps = 16/279 (5%)

Query: 181 MIGGYCEEGRLEEARALFDEMPKR--NVVTWTTMVSGYARNRRVDVARKL------FEVM 232
           ++G Y   G   +   +F  +  R  ++  W +++S + RN  ++ A         F V 
Sbjct: 76  ILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVS 135

Query: 233 PERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNE-----MIMGFGFDGDVDRA 287
           P+   VS    L+    + +  +  +F         + CNE     +I  +   G +D  
Sbjct: 136 PD---VSTFPCLVKACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVP 192

Query: 288 KAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXX 347
             +F+++ ++D   W+ M+  Y + G     +  F+ M+ +  + N              
Sbjct: 193 SKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASK 252

Query: 348 XXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMI 407
              D G Q+H  +V S  D +  + ++L++MY KCG    A  +F      D V WN MI
Sbjct: 253 LLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMI 312

Query: 408 TGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACS 446
           +GY Q GL EE+L  F +M  SGV PD I+F  +L + S
Sbjct: 313 SGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVS 351



 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/258 (22%), Positives = 102/258 (39%), Gaps = 41/258 (15%)

Query: 23  GAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNI 82
             I  YA+ G++  A ++F+      R   SWN+M+    Q+  P  A+ +F       I
Sbjct: 481 AVIDMYAKCGRMNLAYEIFERLSK--RDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGI 538

Query: 83  ----VSWNGMVSGFVKNGMVAEARRVFDAMP----VRNVVSWTSMVRGYVQEGNVEEAER 134
               VS +  +S        +  + +   M       +V S ++++  Y + GN++ A  
Sbjct: 539 CYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMN 598

Query: 135 LFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVK-----DVVAVTNMIGGYCEEG 189
           +F  M EKN+VSW  ++       +++D+  LF  M  K     D +    +I   C  G
Sbjct: 599 VFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVG 658

Query: 190 RLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTH 249
            ++E    F  M +                         + + P++   +    L G   
Sbjct: 659 DVDEGVRFFRSMTED------------------------YGIQPQQEHYACVVDLFG--R 692

Query: 250 SGRMREASEFFDAMPVKP 267
           +GR+ EA E   +MP  P
Sbjct: 693 AGRLTEAYETVKSMPFPP 710



 Score = 59.7 bits (143), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 104/242 (42%), Gaps = 40/242 (16%)

Query: 352 HGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLK--DVVMWNSMITG 409
            G+QVHA L+ +    D Y    ++ MY  CG       +F R  L+   +  WNS+I+ 
Sbjct: 53  QGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISS 112

Query: 410 YSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSAC--------------SYSGKVKEGR 455
           + ++GL  +AL  +  M   GV PD  +F  ++ AC              + S    +  
Sbjct: 113 FVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDFLSDTVSSLGMDCN 172

Query: 456 EIFESMKCKYQVEPG-----------IEHYAC-----MVDLLGRAGQVNDAVEIVEKMPM 499
           E   S   K  +E G           +    C     M++   + G ++  ++    M M
Sbjct: 173 EFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRM 232

Query: 500 E---PDAIVWGSLLGACRTHMKLDLAEVAVEKL---AQLEPKNAGPYVLLSHMYASKGRW 553
           +   P+A+ +  +L  C + + +DL  V +  L   + ++ + +    LLS MY+  GR+
Sbjct: 233 DQISPNAVTFDCVLSVCASKLLIDLG-VQLHGLVVVSGVDFEGSIKNSLLS-MYSKCGRF 290

Query: 554 ED 555
           +D
Sbjct: 291 DD 292


>AT3G09040.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfamily
            protein | chr3:2761195-2764281 REVERSE LENGTH=1028
          Length = 1028

 Score =  316 bits (810), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 201/660 (30%), Positives = 336/660 (50%), Gaps = 69/660 (10%)

Query: 22   TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLF------- 74
            +  +S Y++  ++E A KVF+      +    WNAM+  Y    + H+ + LF       
Sbjct: 366  SSLVSMYSKCEKMEAAAKVFEALEE--KNDVFWNAMIRGYAHNGESHKVMELFMDMKSSG 423

Query: 75   --------------------------------ETTPEKNIVSWNGMVSGFVKNGMVAEAR 102
                                            +    KN+   N +V  + K G + +AR
Sbjct: 424  YNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDAR 483

Query: 103  RVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVED 162
            ++F+ M  R+ V+W +++  YVQ+ N  EA  LF RM    +VS    L   LK      
Sbjct: 484  QIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLK--ACTH 541

Query: 163  ARKLFDMMPV----------KDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTM 212
               L+    V          +D+   +++I  Y + G +++AR +F  +P+ +VV+   +
Sbjct: 542  VHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNAL 601

Query: 213  VSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAMPVKPV 268
            ++GY++N  ++ A  LF+ M  R    +E+++  ++        +   ++F   +  +  
Sbjct: 602  IAGYSQNN-LEEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGF 660

Query: 269  VACNEMIMGFGFDG------DVDRAKAVFEKMRE-RDDGTWSAMIKVYERKGFELEALGL 321
             +  E  +G    G       +  A A+F ++   +    W+ M+  + + GF  EAL  
Sbjct: 661  SSEGEY-LGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKF 719

Query: 322  FARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVK 381
            +  M+ +G   +                   GR +H+ +     D D   ++ LI MY K
Sbjct: 720  YKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAK 779

Query: 382  CGDLVRAKWIFNRYPLK-DVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIG 440
            CGD+  +  +F+    + +VV WNS+I GY+++G  E+AL +F  M  S + PD+I+F+G
Sbjct: 780  CGDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLG 839

Query: 441  VLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPME 500
            VL+ACS++GKV +GR+IFE M  +Y +E  ++H ACMVDLLGR G + +A + +E   ++
Sbjct: 840  VLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLK 899

Query: 501  PDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVR 560
            PDA +W SLLGACR H      E++ EKL +LEP+N+  YVLLS++YAS+G WE    +R
Sbjct: 900  PDARLWSSLLGACRIHGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKANALR 959

Query: 561  EKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLR-DAGYSPD 619
            + ++ R V K+PGYSWI+VE++ H+F  GD + H E   I   LE L  L++ DA  +PD
Sbjct: 960  KVMRDRGVKKVPGYSWIDVEQRTHIFAAGDKS-HSEIGKIEMFLEDLYDLMKDDAVVNPD 1018



 Score =  177 bits (448), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 169/743 (22%), Positives = 311/743 (41%), Gaps = 97/743 (13%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQA----VTLFETTPEK 80
           +  YA+  Q+  A K FD    + +  ++WN+M++ Y    +P +     V+LFE     
Sbjct: 102 VDLYAKCAQVSYAEKQFD---FLEKDVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQIFP 158

Query: 81  NIVSWNGMVSGFVKNGMVAEARRVFDAMPV----RNVVSWTSMVRGYVQEGNVEEAERLF 136
           N  +++ ++S   +   V   R++  +M      RN     ++V  Y +   + +A R+F
Sbjct: 159 NKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDARRVF 218

Query: 137 WRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVK----DVVAVTNMIGGYCEEGRLE 192
             + + N V WT +  G +K    E+A  +F+ M  +    D +A   +I  Y   G+L+
Sbjct: 219 EWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTVINTYIRLGKLK 278

Query: 193 EARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSG- 251
           +AR LF EM   +VV W  M+SG+ +     VA + F  M  ++ V  T   +G   S  
Sbjct: 279 DARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNM-RKSSVKSTRSTLGSVLSAI 337

Query: 252 ---RMREASEFFDAMPVKPVVACN-----EMIMGFGFDGDVDRAKAVFEKMRERDDGTWS 303
                 +      A  +K  +A N      ++  +     ++ A  VFE + E++D  W+
Sbjct: 338 GIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWN 397

Query: 304 AMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRS 363
           AMI+ Y   G   + + LF  M+  G  ++                 + G Q H+ +++ 
Sbjct: 398 AMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKK 457

Query: 364 EFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVF 423
           +  ++L+V +AL+ MY KCG L  A+ IF R   +D V WN++I  Y Q     EA ++F
Sbjct: 458 KLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLF 517

Query: 424 RDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGR 483
           + M L G+  D       L AC++   + +G+++   +  K  ++  +   + ++D+  +
Sbjct: 518 KRMNLCGIVSDGACLASTLKACTHVHGLYQGKQV-HCLSVKCGLDRDLHTGSSLIDMYSK 576

Query: 484 AGQVNDAVEIVEKMP---------------------------------MEPDAIVWGSLL 510
            G + DA ++   +P                                 + P  I + +++
Sbjct: 577 CGIIKDARKVFSSLPEWSVVSMNALIAGYSQNNLEEAVVLFQEMLTRGVNPSEITFATIV 636

Query: 511 GACRTHMKLDLAEVAVEKLAQLEPKNAGPYV---LLSHMYASKGRWEDVEVVREKIKTRS 567
            AC     L L      ++ +    + G Y+   LL     S+G  E   +  E    +S
Sbjct: 637 EACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKS 696

Query: 568 VIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSF----- 622
           ++   G           M  G   N   E+ +      R DG+L      PD +      
Sbjct: 697 IVLWTG-----------MMSGHSQNGFYEEALKFYKEMRHDGVL------PDQATFVTVL 739

Query: 623 ----VLHDVEEEEKTHSLGYHSEKLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIA 678
               VL  + E    HSL +H     +A+ L ++     I +      CGD   + ++  
Sbjct: 740 RVCSVLSSLREGRAIHSLIFH-----LAHDLDELTSNTLIDMYAK---CGDMKGSSQVFD 791

Query: 679 KVTGREIIVRDANRFHHF-KDGY 700
           ++  R  +V   +  + + K+GY
Sbjct: 792 EMRRRSNVVSWNSLINGYAKNGY 814



 Score =  151 bits (381), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 128/497 (25%), Positives = 223/497 (44%), Gaps = 61/497 (12%)

Query: 31  IGQIE--NARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGM 88
           +GQ +   +RKVFDE P           +  A       H    +     E  +   N +
Sbjct: 53  LGQCKLFKSRKVFDEMPQ---------RLALALRIGKAVHSKSLILGIDSEGRL--GNAI 101

Query: 89  VSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEK----NV 144
           V  + K   V+ A + FD +  ++V +W SM+  Y   G   +  R F  + E     N 
Sbjct: 102 VDLYAKCAQVSYAEKQFDFLE-KDVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQIFPNK 160

Query: 145 VSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGG-----YCEEGRLEEARALFD 199
            +++++L    +++ VE  R++   M +K  +   +  GG     Y +  R+ +AR +F+
Sbjct: 161 FTFSIVLSTCARETNVEFGRQIHCSM-IKMGLERNSYCGGALVDMYAKCDRISDARRVFE 219

Query: 200 EMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMRE 255
            +   N V WT + SGY +    + A  +FE M +     + +++  ++  Y   G++++
Sbjct: 220 WIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTVINTYIRLGKLKD 279

Query: 256 ASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFE 315
           A   F  M    VVA N MI G G  G    A   F  MR+      S++       G  
Sbjct: 280 ARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRK------SSVKSTRSTLGSV 333

Query: 316 LEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASAL 375
           L A+G+ A +                         D G  VHA  ++     ++YV S+L
Sbjct: 334 LSAIGIVANL-------------------------DLGLVVHAEAIKLGLASNIYVGSSL 368

Query: 376 ITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDD 435
           ++MY KC  +  A  +F     K+ V WN+MI GY+ +G   + + +F DM  SG   DD
Sbjct: 369 VSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDD 428

Query: 436 ISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVE 495
            +F  +LS C+ S  ++ G + F S+  K ++   +     +VD+  + G + DA +I E
Sbjct: 429 FTFTSLLSTCAASHDLEMGSQ-FHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFE 487

Query: 496 KMPMEPDAIVWGSLLGA 512
           +M  + D + W +++G+
Sbjct: 488 RM-CDRDNVTWNTIIGS 503



 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 97/208 (46%), Gaps = 26/208 (12%)

Query: 18  QCTSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETT 77
           + TS   I  YA+ G ++ + +VFDE         SWN+++  Y +      A+ +F++ 
Sbjct: 767 ELTSNTLIDMYAKCGDMKGSSQVFDEMRR-RSNVVSWNSLINGYAKNGYAEDALKIFDSM 825

Query: 78  PEKNI----VSWNGMVSGFVKNGMVAEARRVFDAM--------PVRNVVSWTSMVR--GY 123
            + +I    +++ G+++     G V++ R++F+ M         V +V     ++   GY
Sbjct: 826 RQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGY 885

Query: 124 VQEG-NVEEAERLFWRMPEKNVVSWTVMLGGLL---KDSRVE-DARKLFDMMPVKDVVAV 178
           +QE  +  EA+ L    P+  +  W+ +LG       D R E  A KL ++ P ++  A 
Sbjct: 886 LQEADDFIEAQNL---KPDARL--WSSLLGACRIHGDDIRGEISAEKLIELEP-QNSSAY 939

Query: 179 TNMIGGYCEEGRLEEARALFDEMPKRNV 206
             +   Y  +G  E+A AL   M  R V
Sbjct: 940 VLLSNIYASQGCWEKANALRKVMRDRGV 967


>AT1G19720.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:6819926-6822610 REVERSE
           LENGTH=894
          Length = 894

 Score =  315 bits (807), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 220/786 (27%), Positives = 362/786 (46%), Gaps = 110/786 (13%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKN 81
           T  +S YA+ G I +ARKVFD      R   +W+AM+ AY + ++  +   LF    +  
Sbjct: 119 TKLLSMYAKCGCIADARKVFDSMRE--RNLFTWSAMIGAYSRENRWREVAKLFRLMMKDG 176

Query: 82  IVS---------------------------------------WNGMVSGFVKNGMVAEAR 102
           ++                                         N +++ + K G +  A 
Sbjct: 177 VLPDDFLFPKILQGCANCGDVEAGKVIHSVVIKLGMSSCLRVSNSILAVYAKCGELDFAT 236

Query: 103 RVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV----VSWTVMLGGLLKDS 158
           + F  M  R+V++W S++  Y Q G  EEA  L   M ++ +    V+W +++GG  +  
Sbjct: 237 KFFRRMRERDVIAWNSVLLAYCQNGKHEEAVELVKEMEKEGISPGLVTWNILIGGYNQLG 296

Query: 159 RVEDARKLFDMMPV----KDVVAVTNMIGGYCEEGRLEEARALFDEM------PKR---- 204
           + + A  L   M       DV   T MI G    G   +A  +F +M      P      
Sbjct: 297 KCDAAMDLMQKMETFGITADVFTWTAMISGLIHNGMRYQALDMFRKMFLAGVVPNAVTIM 356

Query: 205 -----------------------------NVVTWTTMVSGYARNRRVDVARKLFEVMPER 235
                                        +V+   ++V  Y++  +++ ARK+F+ +  +
Sbjct: 357 SAVSACSCLKVINQGSEVHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKNK 416

Query: 236 NEVSWTAMLMGYTHSGRMREASEFFDAMP---VKP-VVACNEMIMGFGFDGDVDRAKAVF 291
           +  +W +M+ GY  +G   +A E F  M    ++P ++  N MI G+  +GD   A  +F
Sbjct: 417 DVYTWNSMITGYCQAGYCGKAYELFTRMQDANLRPNIITWNTMISGYIKNGDEGEAMDLF 476

Query: 292 EKMR-----ERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXX 346
           ++M      +R+  TW+ +I  Y + G + EAL LF +MQ      N             
Sbjct: 477 QRMEKDGKVQRNTATWNLIIAGYIQNGKKDEALELFRKMQFSRFMPNSVTILSLLPACAN 536

Query: 347 XXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSM 406
                  R++H  ++R   D    V +AL   Y K GD+  ++ IF     KD++ WNS+
Sbjct: 537 LLGAKMVREIHGCVLRRNLDAIHAVKNALTDTYAKSGDIEYSRTIFLGMETKDIITWNSL 596

Query: 407 ITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQ 466
           I GY  HG    AL +F  M   G+ P+  +   ++ A    G V EG+++F S+   Y 
Sbjct: 597 IGGYVLHGSYGPALALFNQMKTQGITPNRGTLSSIILAHGLMGNVDEGKKVFYSIANDYH 656

Query: 467 VEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAV 526
           + P +EH + MV L GRA ++ +A++ +++M ++ +  +W S L  CR H  +D+A  A 
Sbjct: 657 IIPALEHCSAMVYLYGRANRLEEALQFIQEMNIQSETPIWESFLTGCRIHGDIDMAIHAA 716

Query: 527 EKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLP-GYSWIEVEKKAHM 585
           E L  LEP+N     ++S +YA   +     +   K +  +++K P G SWIEV    H 
Sbjct: 717 ENLFSLEPENTATESIVSQIYALGAKL-GRSLEGNKPRRDNLLKKPLGQSWIEVRNLIHT 775

Query: 586 FVGGDNN--CHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDVEEEEKTHSLGYHSEKL 643
           F  GD +  C      +++ + RLD   R   Y+ +       +EEE +  + G HSEK 
Sbjct: 776 FTTGDQSKLCTDVLYPLVEKMSRLDN--RSDQYNGELW-----IEEEGREETCGIHSEKF 828

Query: 644 AIAYGLLKVP--EGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIVRDANRFHHFKDGYC 701
           A+A+GL+         IR++KNLR+C DCH   K ++K  G +I++ D    HHFK+G C
Sbjct: 829 AMAFGLISSSGASKTTIRILKNLRMCRDCHDTAKYVSKRYGCDILLEDTRCLHHFKNGDC 888

Query: 702 SCKDYW 707
           SCKDYW
Sbjct: 889 SCKDYW 894



 Score =  116 bits (290), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 112/479 (23%), Positives = 212/479 (44%), Gaps = 73/479 (15%)

Query: 74  FETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAE 133
           F    E NI+  +       +NG + EA +  D++              + Q   V+ + 
Sbjct: 39  FTKKKEPNIIP-DEQFDYLCRNGSLLEAEKALDSL--------------FQQGSKVKRST 83

Query: 134 RLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEE 193
            L  ++ E  + S ++ LG      R+  AR  F +    DV   T ++  Y + G + +
Sbjct: 84  YL--KLLESCIDSGSIHLG------RILHAR--FGLFTEPDVFVETKLLSMYAKCGCIAD 133

Query: 194 ARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTH 249
           AR +FD M +RN+ TW+ M+  Y+R  R     KLF +M +     ++  +  +L G  +
Sbjct: 134 ARKVFDSMRERNLFTWSAMIGAYSRENRWREVAKLFRLMMKDGVLPDDFLFPKILQGCAN 193

Query: 250 SGRMREASEFFDAMPVK-PVVAC----NEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSA 304
            G + EA +   ++ +K  + +C    N ++  +   G++D A   F +MRERD   W++
Sbjct: 194 CGDV-EAGKVIHSVVIKLGMSSCLRVSNSILAVYAKCGELDFATKFFRRMRERDVIAWNS 252

Query: 305 MIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSE 364
           ++  Y + G   EA+ L   M++EG +                        V   ++   
Sbjct: 253 VLLAYCQNGKHEEAVELVKEMEKEGISPGL---------------------VTWNILIGG 291

Query: 365 FDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFR 424
           ++Q     +A+        DL++    F      DV  W +MI+G   +G+  +AL++FR
Sbjct: 292 YNQLGKCDAAM--------DLMQKMETFG--ITADVFTWTAMISGLIHNGMRYQALDMFR 341

Query: 425 DMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRA 484
            M L+GV P+ ++ +  +SACS    + +G E+  S+  K      +     +VD+  + 
Sbjct: 342 KMFLAGVVPNAVTIMSAVSACSCLKVINQGSEV-HSIAVKMGFIDDVLVGNSLVDMYSKC 400

Query: 485 GQVNDAVEIVEKMPMEPDAIVWGSLL-GACRTHMKLDLAEVAVEKLAQLEPKNAGPYVL 542
           G++ DA ++ + +    D   W S++ G C+          A E   +++  N  P ++
Sbjct: 401 GKLEDARKVFDSVK-NKDVYTWNSMITGYCQA----GYCGKAYELFTRMQDANLRPNII 454


>AT5G03800.1 | Symbols: EMB175, emb1899, EMB166 | Pentatricopeptide
           repeat (PPR) superfamily protein | chr5:1010894-1013584
           REVERSE LENGTH=896
          Length = 896

 Score =  308 bits (790), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 208/691 (30%), Positives = 336/691 (48%), Gaps = 66/691 (9%)

Query: 82  IVSWNGMVSGFVKNGMVA-----------EARRVFDAMPVRNVVSWTSMVRGYVQEGNVE 130
           IV    + S FV N +++           +  ++FD +P R+V SW ++V   V+EG   
Sbjct: 207 IVKSGFLNSVFVSNSLMSLYDKDSGSSCDDVLKLFDEIPQRDVASWNTVVSSLVKEGKSH 266

Query: 131 EAERLFWRMPE---------------KNVVSWTVMLGG-----------LLKDSRVEDA- 163
           +A  LF+ M                  +    +V+L G           L+++  V +A 
Sbjct: 267 KAFDLFYEMNRVEGFGVDSFTLSTLLSSCTDSSVLLRGRELHGRAIRIGLMQELSVNNAL 326

Query: 164 -------------RKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWT 210
                          L++MM  +D V  T MI  Y   G ++ A  +F  + ++N +T+ 
Sbjct: 327 IGFYSKFWDMKKVESLYEMMMAQDAVTFTEMITAYMSFGMVDSAVEIFANVTEKNTITYN 386

Query: 211 TMVSGYARNRRVDVARKLFEVMPERN-EVSWTAMLMGYTHSGRMRE--ASEFFDAMPVKP 267
            +++G+ RN     A KLF  M +R  E++  ++       G + E   SE      +K 
Sbjct: 387 ALMAGFCRNGHGLKALKLFTDMLQRGVELTDFSLTSAVDACGLVSEKKVSEQIHGFCIKF 446

Query: 268 VVACNEMIMGFGFD-----GDVDRAKAVFEKMRERDDGT--WSAMIKVYERKGFELEALG 320
             A N  I     D       +  A+ +F++     D +   +++I  Y R G   +A+ 
Sbjct: 447 GTAFNPCIQTALLDMCTRCERMADAEEMFDQWPSNLDSSKATTSIIGGYARNGLPDKAVS 506

Query: 321 LFAR-MQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMY 379
           LF R +  +   L+                 + G Q+H   +++ +  D+ + ++LI+MY
Sbjct: 507 LFHRTLCEQKLFLDEVSLTLILAVCGTLGFREMGYQIHCYALKAGYFSDISLGNSLISMY 566

Query: 380 VKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFI 439
            KC D   A  IFN     DV+ WNS+I+ Y     G+EAL ++  M    + PD I+  
Sbjct: 567 AKCCDSDDAIKIFNTMREHDVISWNSLISCYILQRNGDEALALWSRMNEKEIKPDIITLT 626

Query: 440 GVLSACSY--SGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKM 497
            V+SA  Y  S K+   R++F SMK  Y +EP  EHY   V +LG  G + +A + +  M
Sbjct: 627 LVISAFRYTESNKLSSCRDLFLSMKTIYDIEPTTEHYTAFVRVLGHWGLLEEAEDTINSM 686

Query: 498 PMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVE 557
           P++P+  V  +LL +CR H    +A+   + +   +P+    Y+L S++Y++ G W   E
Sbjct: 687 PVQPEVSVLRALLDSCRIHSNTSVAKRVAKLILSTKPETPSEYILKSNIYSASGFWHRSE 746

Query: 558 VVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYS 617
           ++RE+++ R   K P  SWI  E K H F   D + HP++  I + LE L       GY 
Sbjct: 747 MIREEMRERGYRKHPAKSWIIHENKIHSFHARDTS-HPQEKDIYRGLEILIMECLKVGYE 805

Query: 618 PDHSFVLHDVEEEEKTHSLGYHSEKLAIAYGLLKV-PEGMPIRVMKNLRVCGDCHSAIKL 676
           P+  +VL +V+E  K   L +HS KLA+ YG+L     G P+RVMKN+ +CGDCH   K 
Sbjct: 806 PNTEYVLQEVDEFMKKSFLFHHSAKLAVTYGILSSNTRGKPVRVMKNVMLCGDCHEFFKY 865

Query: 677 IAKVTGREIIVRDANRFHHFKDGYCSCKDYW 707
           I+ V  REI++RD++ FHHF +G CSC+D W
Sbjct: 866 ISVVVKREIVLRDSSGFHHFVNGKCSCRDLW 896



 Score =  127 bits (318), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 110/482 (22%), Positives = 222/482 (46%), Gaps = 27/482 (5%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVV 114
           NA+++ Y +   P +A+ +F +     +VS+  ++SGF +  +  EA +VF  M    +V
Sbjct: 118 NALISTYLKLGFPREAILVFVSLSSPTVVSYTALISGFSRLNLEIEALKVFFRMRKAGLV 177

Query: 115 -----SWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLL----KD--SRVEDA 163
                ++ +++   V+        ++   + +   ++   +   L+    KD  S  +D 
Sbjct: 178 QPNEYTFVAILTACVRVSRFSLGIQIHGLIVKSGFLNSVFVSNSLMSLYDKDSGSSCDDV 237

Query: 164 RKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPK-----RNVVTWTTMVSGYAR 218
            KLFD +P +DV +   ++    +EG+  +A  LF EM +      +  T +T++S    
Sbjct: 238 LKLFDEIPQRDVASWNTVVSSLVKEGKSHKAFDLFYEMNRVEGFGVDSFTLSTLLSSCTD 297

Query: 219 NRRVDVARKLFE---VMPERNEVSWTAMLMG-YTHSGRMREASEFFDAMPVKPVVACNEM 274
           +  +   R+L      +    E+S    L+G Y+    M++    ++ M  +  V   EM
Sbjct: 298 SSVLLRGRELHGRAIRIGLMQELSVNNALIGFYSKFWDMKKVESLYEMMMAQDAVTFTEM 357

Query: 275 IMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNF 334
           I  +   G VD A  +F  + E++  T++A++  + R G  L+AL LF  M + G  L  
Sbjct: 358 ITAYMSFGMVDSAVEIFANVTEKNTITYNALMAGFCRNGHGLKALKLFTDMLQRGVELTD 417

Query: 335 PXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNR 394
                               Q+H   ++     +  + +AL+ M  +C  +  A+ +F++
Sbjct: 418 FSLTSAVDACGLVSEKKVSEQIHGFCIKFGTAFNPCIQTALLDMCTRCERMADAEEMFDQ 477

Query: 395 YP--LKDVVMWNSMITGYSQHGLGEEALNVF-RDMCLSGVPPDDISFIGVLSACSYSGKV 451
           +P  L       S+I GY+++GL ++A+++F R +C   +  D++S   +L+ C   G  
Sbjct: 478 WPSNLDSSKATTSIIGGYARNGLPDKAVSLFHRTLCEQKLFLDEVSLTLILAVCGTLGFR 537

Query: 452 KEGREIF-ESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLL 510
           + G +I   ++K  Y  +  + +   ++ +  +    +DA++I   M  E D I W SL+
Sbjct: 538 EMGYQIHCYALKAGYFSDISLGN--SLISMYAKCCDSDDAIKIFNTM-REHDVISWNSLI 594

Query: 511 GA 512
             
Sbjct: 595 SC 596


>AT1G13410.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:4601526-4603174 FORWARD
           LENGTH=474
          Length = 474

 Score =  307 bits (787), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 163/437 (37%), Positives = 250/437 (57%), Gaps = 5/437 (1%)

Query: 181 MIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSW 240
           + G  C  G +  A  +F EM ++NVV WT+M++GY  N+ +  AR+ F++ PER+ V W
Sbjct: 34  LFGMLCLMGVIASANKVFCEMVEKNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLW 93

Query: 241 TAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDG 300
             M+ GY   G M EA   FD MP + V++ N ++ G+   GD++  + VF+ M ER+  
Sbjct: 94  NTMISGYIEMGNMLEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVF 153

Query: 301 TWSAMIKVYERKGFELEALGLFARMQREGAAL-NFPXXXXXXXXXXXXXXXDHGRQVHAR 359
           +W+ +IK Y + G   E LG F RM  EG+ + N                 D G+ VH  
Sbjct: 154 SWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKY 213

Query: 360 LVRSEFDQ-DLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEE 418
                +++ D+ V +ALI MY KCG +  A  +F     +D++ WN+MI G + HG G E
Sbjct: 214 GETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTE 273

Query: 419 ALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMV 478
           ALN+F +M  SG+ PD ++F+GVL AC + G V++G   F SM   + + P IEH  C+V
Sbjct: 274 ALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCGCVV 333

Query: 479 DLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAG 538
           DLL RAG +  AVE + KMP++ DA++W +LLGA + + K+D+ EVA+E+L +LEP+N  
Sbjct: 334 DLLSRAGFLTQAVEFINKMPVKADAVIWATLLGASKVYKKVDIGEVALEELIKLEPRNPA 393

Query: 539 PYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQP 598
            +V+LS++Y   GR++D   ++  ++     K  G SWIE +     F       HP   
Sbjct: 394 NFVMLSNIYGDAGRFDDAARLKVAMRDTGFKKEAGVSWIETDDGLVKFYSSGEK-HPRTE 452

Query: 599 IIMKMLERLD--GLLRD 613
            + ++L  L    +LRD
Sbjct: 453 ELQRILRELKSFNILRD 469



 Score =  135 bits (339), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/341 (27%), Positives = 159/341 (46%), Gaps = 17/341 (4%)

Query: 96  GMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLL 155
           G++A A +VF  M  +NVV WTSM+ GY+   ++  A R F   PE+++V W  M+ G +
Sbjct: 42  GVIASANKVFCEMVEKNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMISGYI 101

Query: 156 KDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSG 215
           +   + +AR LFD MP +DV++   ++ GY   G +E    +FD+MP+RNV +W  ++ G
Sbjct: 102 EMGNMLEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKG 161

Query: 216 YARNRRVDVARKLFEVMPERNEV-----------SWTAMLMGYTHSGRMREASEFFDAMP 264
           YA+N RV      F+ M +   V           S  A L  +     + +  E      
Sbjct: 162 YAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNK 221

Query: 265 VKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFAR 324
           V   V  N +I  +G  G ++ A  VF+ ++ RD  +W+ MI      G   EAL LF  
Sbjct: 222 VDVNVK-NALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHE 280

Query: 325 MQREGAALNFPXXXXXXXXXXXXXXXDHGRQ-VHARLVRSEFDQDLYVASALITMYVKCG 383
           M+  G + +                 + G    ++         ++     ++ +  + G
Sbjct: 281 MKNSGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCGCVVDLLSRAG 340

Query: 384 DLVRAKWIFNRYPLK-DVVMWNSMITG---YSQHGLGEEAL 420
            L +A    N+ P+K D V+W +++     Y +  +GE AL
Sbjct: 341 FLTQAVEFINKMPVKADAVIWATLLGASKVYKKVDIGEVAL 381



 Score =  122 bits (307), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 153/335 (45%), Gaps = 56/335 (16%)

Query: 31  IGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVS 90
           +G I +A KVF E   + +    W +M+  Y        A   F+ +PE++IV WN M+S
Sbjct: 41  MGVIASANKVFCEM--VEKNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMIS 98

Query: 91  GFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVM 150
           G+++ G + EAR +FD MP R+V+SW +++ GY   G++E  ER+F  MPE+NV SW  +
Sbjct: 99  GYIEMGNMLEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGL 158

Query: 151 LGGLLKDSRVEDARKLFDMMPVK------------------------------------- 173
           + G  ++ RV +    F  M  +                                     
Sbjct: 159 IKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLG 218

Query: 174 ----DVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLF 229
               DV     +I  Y + G +E A  +F  + +R++++W TM++G A +     A  LF
Sbjct: 219 YNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLF 278

Query: 230 EVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAM----PVKPVVA-CNEMIMGFGF 280
             M       ++V++  +L    H G + +   +F++M     + P +  C  ++     
Sbjct: 279 HEMKNSGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCGCVVDLLSR 338

Query: 281 DGDVDRAKAVFEKMRERDDGT-WSAMI---KVYER 311
            G + +A     KM  + D   W+ ++   KVY++
Sbjct: 339 AGFLTQAVEFINKMPVKADAVIWATLLGASKVYKK 373


>AT3G15930.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:5387444-5389690 FORWARD
           LENGTH=687
          Length = 687

 Score =  298 bits (764), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 203/657 (30%), Positives = 315/657 (47%), Gaps = 72/657 (10%)

Query: 20  TSTGAISR-YARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTP 78
           T T +IS  Y+R   I    K  D+   +H  + +        FQ               
Sbjct: 25  TITESISNDYSRFISILGVCKTTDQFKQLHSQSITRGVAPNPTFQ--------------- 69

Query: 79  EKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWR 138
           +K  V W   + G V     + A ++F  +P  +VV W +M++G+ +     E  RL+  
Sbjct: 70  KKLFVFWCSRLGGHV-----SYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLN 124

Query: 139 MPEKNVV----SWTVMLGGLLKDSRVEDARKLFDMMPVK-----DVVAVTNMIGGYCEEG 189
           M ++ V     ++  +L GL +D       K      VK     ++     ++  Y   G
Sbjct: 125 MLKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCG 184

Query: 190 RLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWT-------- 241
            ++ AR +FD   K +V +W  M+SGY R +  + + +L   M ERN VS T        
Sbjct: 185 LMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEM-ERNLVSPTSVTLLLVL 243

Query: 242 --------------------------------AMLMGYTHSGRMREASEFFDAMPVKPVV 269
                                           A++  Y   G M  A   F +M  + V+
Sbjct: 244 SACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVI 303

Query: 270 ACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREG 329
           +   ++ G+   G++  A+  F++M  RD  +W+ MI  Y R G   E+L +F  MQ  G
Sbjct: 304 SWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAG 363

Query: 330 AALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAK 389
              +                 + G  +   + +++   D+ V +ALI MY KCG   +A+
Sbjct: 364 MIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQ 423

Query: 390 WIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSG 449
            +F+    +D   W +M+ G + +G G+EA+ VF  M    + PDDI+++GVLSAC++SG
Sbjct: 424 KVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSG 483

Query: 450 KVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSL 509
            V + R+ F  M+  +++EP + HY CMVD+LGRAG V +A EI+ KMPM P++IVWG+L
Sbjct: 484 MVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGAL 543

Query: 510 LGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVI 569
           LGA R H    +AE+A +K+ +LEP N   Y LL ++YA   RW+D+  VR KI   ++ 
Sbjct: 544 LGASRLHNDEPMAELAAKKILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIK 603

Query: 570 KLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHD 626
           K PG+S IEV   AH FV GD +    + I MK LE L      A Y PD S +L +
Sbjct: 604 KTPGFSLIEVNGFAHEFVAGDKSHLQSEEIYMK-LEELAQESTFAAYLPDTSELLFE 659


>AT1G17630.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:6064525-6066720 FORWARD
           LENGTH=731
          Length = 731

 Score =  297 bits (760), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 198/647 (30%), Positives = 317/647 (48%), Gaps = 76/647 (11%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRT-TSSWNAMVAAYFQAHQPHQAVTLF--------- 74
           IS YAR+G + +AR VF+    +  +    WN+++ A         A+ L+         
Sbjct: 96  ISVYARLGLLLDARNVFETVSLVLLSDLRLWNSILKANVSHGLYENALELYRGMRQRGLT 155

Query: 75  ------------------------------ETTPEKNIVSWNGMVSGFVKNGMVAEARRV 104
                                         +   ++N+   N +++ + K G + +A  +
Sbjct: 156 GDGYILPLILRACRYLGRFGLCRAFHTQVIQIGLKENLHVVNELLTLYPKAGRMGDAYNL 215

Query: 105 FDAMPVRNVVSWTSMVRGYVQEGNVEEAERLF-WRMPEK---NVVSWTVMLGGLLKDSRV 160
           F  MPVRN +SW  M++G+ QE + E A ++F W   E+   + V+WT +L    +  + 
Sbjct: 216 FVEMPVRNRMSWNVMIKGFSQEYDCESAVKIFEWMQREEFKPDEVTWTSVLSCHSQCGKF 275

Query: 161 EDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNR 220
           ED  K F +M +       N + G       E     F    +   ++    V GY    
Sbjct: 276 EDVLKYFHLMRMSG-----NAVSG-------EALAVFFSVCAELEALSIAEKVHGYV--- 320

Query: 221 RVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGF 280
              +     E +P RN     A++  Y   G++++A   F  +  K + + N +I  F  
Sbjct: 321 ---IKGGFEEYLPSRN-----ALIHVYGKQGKVKDAEHLFRQIRNKGIESWNSLITSFVD 372

Query: 281 DGDVDRAKAVFEKMRERDDG--------TWSAMIKVYERKGFELEALGLFARMQREGAAL 332
            G +D A ++F ++ E +          TW+++IK    +G   ++L  F +MQ      
Sbjct: 373 AGKLDEALSLFSELEEMNHVCNVKANVVTWTSVIKGCNVQGRGDDSLEYFRQMQFSKVLA 432

Query: 333 NFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIF 392
           N                 + GR++H  ++R+   +++ V +AL+ MY KCG L     +F
Sbjct: 433 NSVTICCILSICAELPALNLGREIHGHVIRTSMSENILVQNALVNMYAKCGLLSEGSLVF 492

Query: 393 NRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVK 452
                KD++ WNS+I GY  HG  E+AL++F  M  SG  PD I+ + VLSACS++G V+
Sbjct: 493 EAIRDKDLISWNSIIKGYGMHGFAEKALSMFDRMISSGFHPDGIALVAVLSACSHAGLVE 552

Query: 453 EGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGA 512
           +GREIF SM  ++ +EP  EHYAC+VDLLGR G + +A EIV+ MPMEP   V G+LL +
Sbjct: 553 KGREIFYSMSKRFGLEPQQEHYACIVDLLGRVGFLKEASEIVKNMPMEPKVCVLGALLNS 612

Query: 513 CRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLP 572
           CR H  +D+AE    +L+ LEP+  G Y+LLS++Y++ GRWE+   VR   K + + K+ 
Sbjct: 613 CRMHKNVDIAEGIASQLSVLEPERTGSYMLLSNIYSAGGRWEESANVRALAKKKDLKKVS 672

Query: 573 GYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPD 619
           G SWIEV+KK + F  G +    E   I  +LE L   +   G + D
Sbjct: 673 GSSWIEVKKKKYKFSSG-SIVQSEFETIYPVLEDLVSHMLKKGPTHD 718


>AT2G33680.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:14249608-14251791 FORWARD
           LENGTH=727
          Length = 727

 Score =  296 bits (758), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 201/677 (29%), Positives = 330/677 (48%), Gaps = 79/677 (11%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQ---AHQPHQAVTLFETTPEKN 81
           ++ YA+ G++  A  +F+    I +   SWN+++  Y Q       +  + LF     ++
Sbjct: 56  VNFYAKCGKLAKAHSIFNAI--ICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQD 113

Query: 82  IVSWNGMVSGFVKNGMVAEAR---RVFDAMPVR-----NVVSWTSMVRGYVQEGNVEEAE 133
           I+     ++G  K     ++    R   A+ V+     ++   TS+V  Y + G VE+  
Sbjct: 114 ILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGL 173

Query: 134 RLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMM---------------PVKDVVAV 178
           ++F  MPE+N  +W+ M+ G     RVE+A K+F++                 V   +A 
Sbjct: 174 KVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAA 233

Query: 179 TNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEV 238
           T  +G   +   +     L   +   N      +V+ Y++   ++ A K+F+   +RN +
Sbjct: 234 TIYVGLGRQIHCITIKNGLLGFVALSNA-----LVTMYSKCESLNEACKMFDSSGDRNSI 288

Query: 239 SWTAMLMGYTHSGRMREASEFFDAM---PVKP--------VVACNEM------------I 275
           +W+AM+ GY+ +G   EA + F  M    +KP        + AC+++            +
Sbjct: 289 TWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFL 348

Query: 276 MGFGFD----------------GDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEAL 319
           +  GF+                G +  A+  F+ ++ERD   W+++I  Y +     EAL
Sbjct: 349 LKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEAL 408

Query: 320 GLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMY 379
            L+ RM+  G   N P               + G+QVH   ++  F  ++ + SAL TMY
Sbjct: 409 ILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMY 468

Query: 380 VKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFI 439
            KCG L     +F R P KDVV WN+MI+G S +G G+EAL +F +M   G+ PDD++F+
Sbjct: 469 SKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFV 528

Query: 440 GVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPM 499
            ++SACS+ G V+ G   F  M  +  ++P ++HYACMVDLL RAGQ+ +A E +E   +
Sbjct: 529 NIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQLKEAKEFIESANI 588

Query: 500 EPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVV 559
           +    +W  LL AC+ H K +L   A EKL  L  + +  YV LS +Y + GR  DVE V
Sbjct: 589 DHGLCLWRILLSACKNHGKCELGVYAGEKLMALGSRESSTYVQLSGIYTALGRMRDVERV 648

Query: 560 REKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSP- 618
            + ++   V K  G SWIE++ + H+FV GD   HP       ++  +   + + G+   
Sbjct: 649 WKHMRANGVSKEVGCSWIELKNQYHVFVVGD-TMHPMIEETKDLVCLVSRQMIEEGFVTV 707

Query: 619 -DHSFVLHDVEEEEKTH 634
            D SF    VEEEE T 
Sbjct: 708 LDSSF----VEEEEGTQ 720



 Score =  194 bits (494), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 139/497 (27%), Positives = 243/497 (48%), Gaps = 58/497 (11%)

Query: 73  LFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEA 132
           +  T     I   N +V+ + K G +A+A  +F+A+  ++VVSW S++ GY Q G +  +
Sbjct: 40  IIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSS 99

Query: 133 E---RLFWRMPEKNVVSWTVMLGGLLK-DSRVEDAR-------KLFDMMPVKDVVAVTNM 181
               +LF  M  ++++     L G+ K +S ++ +         +  M    D+   T++
Sbjct: 100 YTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSL 159

Query: 182 IGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEV-MPERNEVS- 239
           +G YC+ G +E+   +F  MP+RN  TW+TMVSGYA   RV+ A K+F + + E+ E S 
Sbjct: 160 VGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSD 219

Query: 240 ----WTAMLMG-----YTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAV 290
               +TA+L       Y   GR        + + +  V   N ++  +     ++ A  +
Sbjct: 220 SDYVFTAVLSSLAATIYVGLGRQIHCITIKNGL-LGFVALSNALVTMYSKCESLNEACKM 278

Query: 291 FEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXX 350
           F+   +R+  TWSAM+  Y + G  LEA+ LF+RM   G   +                 
Sbjct: 279 FDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYL 338

Query: 351 DHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGY 410
           + G+Q+H+ L++  F++ L+  +AL+ MY K G L  A+  F+    +DV +W S+I+GY
Sbjct: 339 EEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGY 398

Query: 411 SQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREI------------- 457
            Q+   EEAL ++R M  +G+ P+D +   VL ACS    ++ G+++             
Sbjct: 399 VQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEV 458

Query: 458 -----FESM--KCKYQVEPG-----------IEHYACMVDLLGRAGQVNDAVEIVEKM-- 497
                  +M  KC   +E G           +  +  M+  L   GQ ++A+E+ E+M  
Sbjct: 459 PIGSALSTMYSKCG-SLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLA 517

Query: 498 -PMEPDAIVWGSLLGAC 513
             MEPD + + +++ AC
Sbjct: 518 EGMEPDDVTFVNIISAC 534



 Score = 82.4 bits (202), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 5/173 (2%)

Query: 353 GRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQ 412
           GR VH +++R+     +  A+ L+  Y KCG L +A  IFN    KDVV WNS+ITGYSQ
Sbjct: 33  GRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQ 92

Query: 413 HG---LGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEP 469
           +G        + +FR+M    + P+  +  G+  A S       GR+   ++  K     
Sbjct: 93  NGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVGRQA-HALVVKMSSFG 151

Query: 470 GIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLA 522
            I     +V +  +AG V D +++   MP E +   W +++    T  +++ A
Sbjct: 152 DIYVDTSLVGMYCKAGLVEDGLKVFAYMP-ERNTYTWSTMVSGYATRGRVEEA 203



 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 102/227 (44%), Gaps = 19/227 (8%)

Query: 21  STGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEK 80
           +T  +  YA+ G + +ARK FD      R  + W ++++ Y Q     +A+ L+      
Sbjct: 360 TTALVDMYAKAGCLADARKGFDCLQ--ERDVALWTSLISGYVQNSDNEEALILYRRMKTA 417

Query: 81  NIVSWNGMVSGFVK---NGMVAEARRVFDAMPVRN-----VVSWTSMVRGYVQEGNVEEA 132
            I+  +  ++  +K   +    E  +      +++     V   +++   Y + G++E+ 
Sbjct: 418 GIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDG 477

Query: 133 ERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVK----DVVAVTNMIGGYCEE 188
             +F R P K+VVSW  M+ GL  + + ++A +LF+ M  +    D V   N+I     +
Sbjct: 478 NLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACSHK 537

Query: 189 GRLEEARALFDEMPKR-----NVVTWTTMVSGYARNRRVDVARKLFE 230
           G +E     F+ M  +      V  +  MV   +R  ++  A++  E
Sbjct: 538 GFVERGWFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQLKEAKEFIE 584


>AT3G53360.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:19784502-19786808 FORWARD
           LENGTH=768
          Length = 768

 Score =  295 bits (754), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 184/663 (27%), Positives = 326/663 (49%), Gaps = 63/663 (9%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLF------ETTP 78
           +S Y + G + +AR+VFD  P   R   S+ +++  Y Q  Q  +A+ L+      +  P
Sbjct: 109 LSMYGKCGSLRDAREVFDFMPE--RNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVP 166

Query: 79  EK---------------------------------NIVSWNGMVSGFVKNGMVAEARRVF 105
           ++                                 ++++ N +++ +V+   +++A RVF
Sbjct: 167 DQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVF 226

Query: 106 DAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWT-VMLGGLLKDSRV---E 161
             +P+++++SW+S++ G+ Q G   EA      M    V      + G  LK        
Sbjct: 227 YGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRP 286

Query: 162 DARKLFDMMPVKDVVAVTNMIGG------YCEEGRLEEARALFDEMPKRNVVTWTTMVSG 215
           D       + +K  +A  N I G      Y   G L  AR +FD++ + +  +W  +++G
Sbjct: 287 DYGSQIHGLCIKSELA-GNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAG 345

Query: 216 YARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAMP----VKP 267
            A N   D A  +F  M       + +S  ++L   T    + +  +    +     +  
Sbjct: 346 LANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLAD 405

Query: 268 VVACNEMIMGFGFDGDVDRAKAVFEKMRERDDG-TWSAMIKVYERKGFELEALGLFARMQ 326
           +  CN ++  + F  D+     +FE  R   D  +W+ ++    +    +E L LF  M 
Sbjct: 406 LTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLML 465

Query: 327 REGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLV 386
                 +                   G QVH   +++    + ++ + LI MY KCG L 
Sbjct: 466 VSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLG 525

Query: 387 RAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACS 446
           +A+ IF+    +DVV W+++I GY+Q G GEEAL +F++M  +G+ P+ ++F+GVL+ACS
Sbjct: 526 QARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACS 585

Query: 447 YSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVW 506
           + G V+EG +++ +M+ ++ + P  EH +C+VDLL RAG++N+A   +++M +EPD +VW
Sbjct: 586 HVGLVEEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVW 645

Query: 507 GSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTR 566
            +LL AC+T   + LA+ A E + +++P N+  +VLL  M+AS G WE+  ++R  +K  
Sbjct: 646 KTLLSACKTQGNVHLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWENAALLRSSMKKH 705

Query: 567 SVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHD 626
            V K+PG SWIE+E K H+F   D   HPE+  I  +L  +   + D   +P H   L  
Sbjct: 706 DVKKIPGQSWIEIEDKIHIFFAEDIF-HPERDDIYTVLHNIWSQMLDEC-NPQHKKRLQF 763

Query: 627 VEE 629
           + E
Sbjct: 764 IHE 766



 Score =  145 bits (367), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 111/446 (24%), Positives = 212/446 (47%), Gaps = 26/446 (5%)

Query: 86  NGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVV 145
           N ++S + K G + +AR VFD MP RN+VS+TS++ GY Q G   EA RL+ +M ++++V
Sbjct: 106 NHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLV 165

Query: 146 SWTVMLGGLLK----DSRVEDARKL----FDMMPVKDVVAVTNMIGGYCEEGRLEEARAL 197
                 G ++K     S V   ++L      +     ++A   +I  Y    ++ +A  +
Sbjct: 166 PDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRV 225

Query: 198 FDEMPKRNVVTWTTMVSGYAR-NRRVDVARKLFEVMP----ERNEVSWTAMLMGYTHSGR 252
           F  +P +++++W+++++G+++     +    L E++       NE  + + L   +   R
Sbjct: 226 FYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLR 285

Query: 253 MREASEFFDAMPVKPVVACNEMIMG------FGFDGDVDRAKAVFEKMRERDDGTWSAMI 306
               S+    + +K  +A N  I G      +   G ++ A+ VF+++   D  +W+ +I
Sbjct: 286 PDYGSQ-IHGLCIKSELAGNA-IAGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVII 343

Query: 307 KVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFD 366
                 G+  EA+ +F++M+  G   +                   G Q+H+ +++  F 
Sbjct: 344 AGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFL 403

Query: 367 QDLYVASALITMYVKCGDLVRAKWIFNRY-PLKDVVMWNSMITGYSQHGLGEEALNVFRD 425
            DL V ++L+TMY  C DL     +F  +    D V WN+++T   QH    E L +F+ 
Sbjct: 404 ADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKL 463

Query: 426 MCLSGVPPDDISFIGVLSACSYSGKVKEGREIF-ESMKCKYQVEPGIEHYACMVDLLGRA 484
           M +S   PD I+   +L  C     +K G ++   S+K     E  I++   ++D+  + 
Sbjct: 464 MLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNG--LIDMYAKC 521

Query: 485 GQVNDAVEIVEKMPMEPDAIVWGSLL 510
           G +  A  I + M    D + W +L+
Sbjct: 522 GSLGQARRIFDSMD-NRDVVSWSTLI 546



 Score =  112 bits (279), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/376 (23%), Positives = 156/376 (41%), Gaps = 46/376 (12%)

Query: 186 CEEGR-LEEARALFDEMPKRN----VVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSW 240
           C   R L + R + D +   N     +    ++S Y +   +  AR++F+ MPERN VS+
Sbjct: 77  CSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSY 136

Query: 241 TAMLMGYTHSGRMREASEFF------DAMP--------VKPVVACNEMIMGFGFDGDVDR 286
           T+++ GY+ +G+  EA   +      D +P        +K   + +++ +G      V +
Sbjct: 137 TSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIK 196

Query: 287 -------------------------AKAVFEKMRERDDGTWSAMIKVYERKGFELEALGL 321
                                    A  VF  +  +D  +WS++I  + + GFE EAL  
Sbjct: 197 LESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSH 256

Query: 322 FARMQREGA-ALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYV 380
              M   G    N                 D+G Q+H   ++SE   +     +L  MY 
Sbjct: 257 LKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYA 316

Query: 381 KCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIG 440
           +CG L  A+ +F++    D   WN +I G + +G  +EA++VF  M  SG  PD IS   
Sbjct: 317 RCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRS 376

Query: 441 VLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPME 500
           +L A +    + +G +I  S   K+     +     ++ +      +     + E     
Sbjct: 377 LLCAQTKPMALSQGMQI-HSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNN 435

Query: 501 PDAIVWGSLLGACRTH 516
            D++ W ++L AC  H
Sbjct: 436 ADSVSWNTILTACLQH 451



 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 86/203 (42%), Gaps = 17/203 (8%)

Query: 18  QCTSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETT 77
           Q    G I  YA+ G +  AR++FD     +R   SW+ ++  Y Q+    +A+ LF+  
Sbjct: 508 QFIKNGLIDMYAKCGSLGQARRIFDSMD--NRDVVSWSTLIVGYAQSGFGEEALILFKEM 565

Query: 78  P----EKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWT-----SMVRGYVQEGN 128
                E N V++ G+++     G+V E  +++  M   + +S T      +V    + G 
Sbjct: 566 KSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGR 625

Query: 129 VEEAERLFWRMP-EKNVVSWTVMLGGLLKDSRVEDARK----LFDMMPVKDVVAVTNMIG 183
           + EAER    M  E +VV W  +L        V  A+K    +  + P      V  +  
Sbjct: 626 LNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVHLAQKAAENILKIDPFNSTAHVL-LCS 684

Query: 184 GYCEEGRLEEARALFDEMPKRNV 206
            +   G  E A  L   M K +V
Sbjct: 685 MHASSGNWENAALLRSSMKKHDV 707


>AT2G21090.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr2:9045695-9047488 REVERSE
           LENGTH=597
          Length = 597

 Score =  295 bits (754), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 170/512 (33%), Positives = 280/512 (54%), Gaps = 10/512 (1%)

Query: 112 NVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMP 171
           N +    ++  Y++ G   +A ++F +M  +N+ SW  M+ G +K   +  AR +FD MP
Sbjct: 81  NTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVVFDSMP 140

Query: 172 VKDVVAVTNMIGGYCEEGRLEEARALFDEMP----KRNVVTWTTMVSGYARNRRVDVARK 227
            +DVV+   M+ GY ++G L EA   + E      K N  ++  +++   ++R++ + R+
Sbjct: 141 ERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVKSRQLQLNRQ 200

Query: 228 LF-EVMPE---RNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGD 283
              +V+      N V   +++  Y   G+M  A   FD M VK +     +I G+   GD
Sbjct: 201 AHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGD 260

Query: 284 VDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXX 343
           ++ A+ +F +M E++  +W+A+I  Y R+G    AL LF +M   G              
Sbjct: 261 MEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCA 320

Query: 344 XXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLK-DVVM 402
                   HG+++H  ++R+    +  V S+LI MY K G L  ++ +F     K D V 
Sbjct: 321 SASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVFRICDDKHDCVF 380

Query: 403 WNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMK 462
           WN+MI+  +QHGLG +AL +  DM    V P+  + + +L+ACS+SG V+EG   FESM 
Sbjct: 381 WNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTLVVILNACSHSGLVEEGLRWFESMT 440

Query: 463 CKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLA 522
            ++ + P  EHYAC++DLLGRAG   + +  +E+MP EPD  +W ++LG CR H   +L 
Sbjct: 441 VQHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEMPFEPDKHIWNAILGVCRIHGNEELG 500

Query: 523 EVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKK 582
           + A ++L +L+P+++ PY+LLS +YA  G+WE VE +R  +K R V K    SWIE+EKK
Sbjct: 501 KKAADELIKLDPESSAPYILLSSIYADHGKWELVEKLRGVMKKRRVNKEKAVSWIEIEKK 560

Query: 583 AHMFVGGD-NNCHPEQPIIMKMLERLDGLLRD 613
              F   D ++ H  +  I  +L  L  ++ +
Sbjct: 561 VEAFTVSDGSHAHARKEEIYFILHNLAAVIEE 592



 Score =  155 bits (393), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 87/224 (38%), Positives = 132/224 (58%), Gaps = 11/224 (4%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVV 114
           N ++  Y +  +P  A  +F+    +N+ SWN MVSG+VK+GM+  AR VFD+MP R+VV
Sbjct: 86  NHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVVFDSMPERDVV 145

Query: 115 SWTSMVRGYVQEGNVEEA---ERLFWRMPEK-NVVSWTVMLGGLLKDSRVEDARKLFDMM 170
           SW +MV GY Q+GN+ EA    + F R   K N  S+  +L   +K  +++  R+    +
Sbjct: 146 SWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVKSRQLQLNRQAHGQV 205

Query: 171 PV----KDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVAR 226
            V     +VV   ++I  Y + G++E A+  FDEM  +++  WTT++SGYA+   ++ A 
Sbjct: 206 LVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAE 265

Query: 227 KLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFD---AMPVKP 267
           KLF  MPE+N VSWTA++ GY   G    A + F    A+ VKP
Sbjct: 266 KLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKP 309



 Score =  125 bits (315), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 161/324 (49%), Gaps = 23/324 (7%)

Query: 21  STGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEK 80
           S   I  Y + G+  +A KVFD+  H+ R   SWN MV+ Y ++    +A  +F++ PE+
Sbjct: 85  SNHLIGMYMKCGKPIDACKVFDQM-HL-RNLYSWNNMVSGYVKSGMLVRARVVFDSMPER 142

Query: 81  NIVSWNGMVSGFVKNGMVAEA-------RRV---FDAMPVRNVVSWTSMVRGYVQEGNVE 130
           ++VSWN MV G+ ++G + EA       RR    F+      ++  T+ V+    + N +
Sbjct: 143 DVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLL--TACVKSRQLQLNRQ 200

Query: 131 EAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGR 190
              ++       NVV    ++    K  ++E A++ FD M VKD+   T +I GY + G 
Sbjct: 201 AHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGD 260

Query: 191 LEEARALFDEMPKRNVVTWTTMVSGYAR----NRRVDVARKLFEVMPERNEVSWTAMLMG 246
           +E A  LF EMP++N V+WT +++GY R    NR +D+ RK+  +  +  + ++++ L  
Sbjct: 261 MEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCA 320

Query: 247 YTHSGRMREASEFFDAM---PVKP-VVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGT- 301
                 +R   E    M    V+P  +  + +I  +   G ++ ++ VF    ++ D   
Sbjct: 321 SASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVFRICDDKHDCVF 380

Query: 302 WSAMIKVYERKGFELEALGLFARM 325
           W+ MI    + G   +AL +   M
Sbjct: 381 WNTMISALAQHGLGHKALRMLDDM 404


>AT1G06150.1 | Symbols: EMB1444 | basic helix-loop-helix (bHLH)
            DNA-binding superfamily protein | chr1:1867129-1873194
            REVERSE LENGTH=1322
          Length = 1322

 Score =  294 bits (752), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 172/518 (33%), Positives = 264/518 (50%), Gaps = 51/518 (9%)

Query: 112  NVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMP 171
            NV  + ++ +G+V   +   +  L+ RM   +V   +     L+K S    A +  + + 
Sbjct: 835  NVFVYNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKASSF--ASRFGESLQ 892

Query: 172  VK--------DVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVD 223
                       V   T +I  Y   GR+ EAR +FDEMP+R+ + WTTMVS Y R   +D
Sbjct: 893  AHIWKFGFGFHVKIQTTLIDFYSATGRIREARKVFDEMPERDDIAWTTMVSAYRRVLDMD 952

Query: 224  VARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGD 283
             A  L   M E+NE +   ++ GY   G + +A   F+ MPVK +++   MI G+  +  
Sbjct: 953  SANSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKR 1012

Query: 284  VDRAKAVFEKMRER----DDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXX 339
               A AVF KM E     D+ T S +I      G  LE                      
Sbjct: 1013 YREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGV-LEI--------------------- 1050

Query: 340  XXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKD 399
                         G++VH   +++ F  D+Y+ SAL+ MY KCG L RA  +F   P K+
Sbjct: 1051 -------------GKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKN 1097

Query: 400  VVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFE 459
            +  WNS+I G + HG  +EAL +F  M +  V P+ ++F+ V +AC+++G V EGR I+ 
Sbjct: 1098 LFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYR 1157

Query: 460  SMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKL 519
            SM   Y +   +EHY  MV L  +AG + +A+E++  M  EP+A++WG+LL  CR H  L
Sbjct: 1158 SMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGALLDGCRIHKNL 1217

Query: 520  DLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKL-PGYSWIE 578
             +AE+A  KL  LEP N+G Y LL  MYA + RW DV  +R +++   + K+ PG S I 
Sbjct: 1218 VIAEIAFNKLMVLEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGIEKICPGTSSIR 1277

Query: 579  VEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGY 616
            ++K+ H+F   D + H     +  +L+ +   +  AGY
Sbjct: 1278 IDKRDHLFAAADKS-HSASDEVCLLLDEIYDQMGLAGY 1314



 Score =  120 bits (302), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 151/323 (46%), Gaps = 40/323 (12%)

Query: 22   TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKN 81
            T  I  Y+  G+I  ARKVFDE P   R   +W  MV+AY +      A +L     EKN
Sbjct: 908  TTLIDFYSATGRIREARKVFDEMPE--RDDIAWTTMVSAYRRVLDMDSANSLANQMSEKN 965

Query: 82   IVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPE 141
              + N +++G++  G + +A  +F+ MPV++++SWT+M++GY Q     EA  +F++M E
Sbjct: 966  EATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMME 1025

Query: 142  KNVVSWTVMLGGLLKDSR---VEDARKLFDMMPVK-----DVVAVTNMIGGYCEEGRLEE 193
            + ++   V +  ++       V +  K   M  ++     DV   + ++  Y + G LE 
Sbjct: 1026 EGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLER 1085

Query: 194  ARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMP----ERNEVSWTAMLMGYTH 249
            A  +F  +PK+N+  W +++ G A +     A K+F  M     + N V++ ++    TH
Sbjct: 1086 ALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTH 1145

Query: 250  SGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVY 309
            +G + E    + +           MI  +    +V+                +  M+ ++
Sbjct: 1146 AGLVDEGRRIYRS-----------MIDDYSIVSNVEH---------------YGGMVHLF 1179

Query: 310  ERKGFELEALGLFARMQREGAAL 332
             + G   EAL L   M+ E  A+
Sbjct: 1180 SKAGLIYEALELIGNMEFEPNAV 1202


>AT3G63370.1 | Symbols: OTP86 | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:23402080-23405180 FORWARD
           LENGTH=884
          Length = 884

 Score =  293 bits (751), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 196/636 (30%), Positives = 316/636 (49%), Gaps = 68/636 (10%)

Query: 25  ISRYARIGQIENARKVFDE------TPHIHRTTSSWNAMVA-AYFQAHQPHQAVTLFETT 77
           +S Y+  G+     ++F E       P+ +   S+  A    +Y +  +   A  L  +T
Sbjct: 256 LSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSST 315

Query: 78  PEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFW 137
               +   N +++ + + G + +A R+   M   +VV+W S+++GYVQ    +EA   F 
Sbjct: 316 HSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFS 375

Query: 138 RM----------PEKNVVSWTVMLGGLLK-------------DSRVEDARKLFDMMPVKD 174
            M             ++++ +  L  LL              DS ++    L DM    +
Sbjct: 376 DMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCN 435

Query: 175 VVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLF-EVMP 233
           +          C  GR       F  M  +++++WTT+++GYA+N     A +LF +V  
Sbjct: 436 LT---------CYMGRA------FLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAK 480

Query: 234 ERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVAC-------------NEMIMGFGF 280
           +R E+    +       G +  AS    +M +   + C             NE++  +G 
Sbjct: 481 KRMEIDEMIL-------GSILRASSVLKSMLIVKEIHCHILRKGLLDTVIQNELVDVYGK 533

Query: 281 DGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXX 340
             ++  A  VFE ++ +D  +W++MI      G E EA+ LF RM   G + +       
Sbjct: 534 CRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCI 593

Query: 341 XXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDV 400
                     + GR++H  L+R  F  +  +A A++ MY  CGDL  AK +F+R   K +
Sbjct: 594 LSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGL 653

Query: 401 VMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFES 460
           + + SMI  Y  HG G+ A+ +F  M    V PD ISF+ +L ACS++G + EGR   + 
Sbjct: 654 LQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKI 713

Query: 461 MKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLD 520
           M+ +Y++EP  EHY C+VD+LGRA  V +A E V+ M  EP A VW +LL ACR+H + +
Sbjct: 714 MEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKE 773

Query: 521 LAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVE 580
           + E+A ++L +LEPKN G  VL+S+++A +GRW DVE VR K+K   + K PG SWIE++
Sbjct: 774 IGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMD 833

Query: 581 KKAHMFVGGDNNCHPE-QPIIMKMLERLDGLLRDAG 615
            K H F   D + HPE + I  K+ E    L R+ G
Sbjct: 834 GKVHKFTARDKS-HPESKEIYEKLSEVTRKLEREKG 868



 Score =  131 bits (329), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 143/595 (24%), Positives = 241/595 (40%), Gaps = 117/595 (19%)

Query: 28  YARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLF-----ETTP---- 78
           Y + G +++A KVFDE P   RT  +WN M+ AY    +P  A+ L+     E  P    
Sbjct: 126 YGKCGSLDDAEKVFDEMPD--RTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLS 183

Query: 79  -----------EKNIVSW-------------------NGMVSGFVKNGMVAEARRVFDAM 108
                       ++I S                    N +VS + KN  ++ ARR+FD  
Sbjct: 184 SFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGF 243

Query: 109 PVR-NVVSWTSMVRGYVQEGNVEEAERLFWRM----PEKN---VVSWTVMLGGL--LKDS 158
             + + V W S++  Y   G   E   LF  M    P  N   +VS      G    K  
Sbjct: 244 QEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLG 303

Query: 159 RVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYAR 218
           +   A  L       ++     +I  Y   G++ +A  +  +M   +VVTW +++ GY +
Sbjct: 304 KEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQ 363

Query: 219 NRRVDVARKLFEVM----PERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEM 274
           N     A + F  M     + +EVS T+++     SGR+   S     M +   V     
Sbjct: 364 NLMYKEALEFFSDMIAAGHKSDEVSMTSIIAA---SGRL---SNLLAGMELHAYV----- 412

Query: 275 IMGFGFDGDVDRAKAV----------------FEKMRERDDGTWSAMIKVYERKGFELEA 318
            +  G+D ++     +                F +M ++D  +W+ +I  Y +    +EA
Sbjct: 413 -IKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEA 471

Query: 319 LGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITM 378
           L LF  + ++   ++                    +++H  ++R     D  + + L+ +
Sbjct: 472 LELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGL-LDTVIQNELVDV 530

Query: 379 YVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISF 438
           Y KC ++  A  +F     KDVV W SMI+  + +G   EA+ +FR M  +G+  D ++ 
Sbjct: 531 YGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVAL 590

Query: 439 IGVLSACSYSGKVKEGREI----------------------------FESMKCKY-QVE- 468
           + +LSA +    + +GREI                             +S K  + ++E 
Sbjct: 591 LCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIER 650

Query: 469 PGIEHYACMVDLLGRAGQVNDAVEIVEKMPME---PDAIVWGSLLGACRTHMKLD 520
            G+  Y  M++  G  G    AVE+ +KM  E   PD I + +LL AC     LD
Sbjct: 651 KGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLD 705



 Score =  131 bits (329), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 116/472 (24%), Positives = 204/472 (43%), Gaps = 24/472 (5%)

Query: 60  AYFQAHQPHQAVTLFETTPEKNIVSWNG-MVSGFVKNGMVAEARRVFDAMPVRNVVSWTS 118
           A  Q  Q H  +  F+T P   +    G +V  + K G + +A +VFD MP R   +W +
Sbjct: 95  AVSQGRQLHSRI--FKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNT 152

Query: 119 MVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKD-SRVEDARKLFDMMPV----- 172
           M+  YV  G    A  L+W M  + V         LLK  +++ D R   ++  +     
Sbjct: 153 MIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLG 212

Query: 173 --KDVVAVTNMIGGYCEEGRLEEARALFDEMPKR-NVVTWTTMVSGYARNRRVDVARKLF 229
                  V  ++  Y +   L  AR LFD   ++ + V W +++S Y+ + +     +LF
Sbjct: 213 YHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELF 272

Query: 230 EVM----PERNEVSWTAML-----MGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGF 280
             M    P  N  +  + L       Y   G+   AS    +     +  CN +I  +  
Sbjct: 273 REMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTR 332

Query: 281 DGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXX 340
            G + +A+ +  +M   D  TW+++IK Y +     EAL  F+ M   G   +       
Sbjct: 333 CGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSI 392

Query: 341 XXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDV 400
                       G ++HA +++  +D +L V + LI MY KC         F R   KD+
Sbjct: 393 IAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDL 452

Query: 401 VMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFES 460
           + W ++I GY+Q+    EAL +FRD+    +  D++    +L A S    +   +EI   
Sbjct: 453 ISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCH 512

Query: 461 MKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGA 512
           +  K  ++  I++   +VD+ G+   +  A  + E +  + D + W S++ +
Sbjct: 513 ILRKGLLDTVIQNE--LVDVYGKCRNMGYATRVFESIKGK-DVVSWTSMISS 561



 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 99/204 (48%), Gaps = 7/204 (3%)

Query: 351 DHGRQVHARLVRS--EFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMIT 408
             GRQ+H+R+ ++   F+ D ++A  L+ MY KCG L  A+ +F+  P +    WN+MI 
Sbjct: 97  SQGRQLHSRIFKTFPSFELD-FLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIG 155

Query: 409 GYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESM-KCKYQV 467
            Y  +G    AL ++ +M + GVP    SF  +L AC+    ++ G E+   + K  Y  
Sbjct: 156 AYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHS 215

Query: 468 EPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVE 527
              I +   +V +  +   ++ A  + +    + DA++W S+L +  T  K  L  + + 
Sbjct: 216 TGFIVN--ALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGK-SLETLELF 272

Query: 528 KLAQLEPKNAGPYVLLSHMYASKG 551
           +   +       Y ++S + A  G
Sbjct: 273 REMHMTGPAPNSYTIVSALTACDG 296


>AT3G05340.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:1524071-1526047 REVERSE
           LENGTH=658
          Length = 658

 Score =  292 bits (748), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 164/559 (29%), Positives = 291/559 (52%), Gaps = 18/559 (3%)

Query: 82  IVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPE 141
           +V WN ++S + K G + +A ++FD MP+R+V+S   +  G+++    E    L  RM  
Sbjct: 90  LVVWNSLLSLYAKCGKLVDAIKLFDEMPMRDVISQNIVFYGFLRNRETESGFVLLKRMLG 149

Query: 142 K---NVVSWTVMLGGLLKDSRVEDARKLFDMMPV-----KDVVAVTNMIGGYCEEGRLEE 193
               +  + T++L  +          K+   + +     K++     +I  Y + G    
Sbjct: 150 SGGFDHATLTIVLS-VCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKCGCSVS 208

Query: 194 ARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVM----PERNEVSWTAMLMGYTH 249
            R +FD M  RNV+T T ++SG   N   +   +LF +M       N V++ + L   + 
Sbjct: 209 GRGVFDGMSHRNVITLTAVISGLIENELHEDGLRLFSLMRRGLVHPNSVTYLSALAACSG 268

Query: 250 SGRMREASEFFDAM---PVKPVVACNEMIMG-FGFDGDVDRAKAVFEKMRERDDGTWSAM 305
           S R+ E  +    +    ++  +     +M  +   G ++ A  +FE   E D+ + + +
Sbjct: 269 SQRIVEGQQIHALLWKYGIESELCIESALMDMYSKCGSIEDAWTIFESTTEVDEVSMTVI 328

Query: 306 IKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEF 365
           +    + G E EA+  F RM + G  ++                   G+Q+H+ +++ +F
Sbjct: 329 LVGLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAVLGVSFIDNSLGLGKQLHSLVIKRKF 388

Query: 366 DQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRD 425
             + +V + LI MY KCGDL  ++ +F R P ++ V WNSMI  +++HG G  AL ++ +
Sbjct: 389 SGNTFVNNGLINMYSKCGDLTDSQTVFRRMPKRNYVSWNSMIAAFARHGHGLAALKLYEE 448

Query: 426 MCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAG 485
           M    V P D++F+ +L ACS+ G + +GRE+   MK  + +EP  EHY C++D+LGRAG
Sbjct: 449 MTTLEVKPTDVTFLSLLHACSHVGLIDKGRELLNEMKEVHGIEPRTEHYTCIIDMLGRAG 508

Query: 486 QVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSH 545
            + +A   ++ +P++PD  +W +LLGAC  H   ++ E A E+L Q  P ++  ++L+++
Sbjct: 509 LLKEAKSFIDSLPLKPDCKIWQALLGACSFHGDTEVGEYAAEQLFQTAPDSSSAHILIAN 568

Query: 546 MYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLE 605
           +Y+S+G+W++     +++K   V K  G S IE+E K H FV  D   HP+   I  +L 
Sbjct: 569 IYSSRGKWKERAKTIKRMKAMGVTKETGISSIEIEHKTHSFVVED-KLHPQAEAIYDVLS 627

Query: 606 RLDGLLRDAGYSPDHSFVL 624
            L  ++ D GY PD  F+L
Sbjct: 628 GLFPVMVDEGYRPDKRFIL 646



 Score = 90.5 bits (223), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 107/503 (21%), Positives = 198/503 (39%), Gaps = 77/503 (15%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFE--------- 75
           +S YA+ G++ +A K+FDE P   R   S N +   + +  +      L +         
Sbjct: 97  LSLYAKCGKLVDAIKLFDEMPM--RDVISQNIVFYGFLRNRETESGFVLLKRMLGSGGFD 154

Query: 76  -----------TTPE------------------KNIVSWNGMVSGFVKNGMVAEARRVFD 106
                       TPE                  K I   N +++ + K G     R VFD
Sbjct: 155 HATLTIVLSVCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKCGCSVSGRGVFD 214

Query: 107 AMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM----PEKNVVSWTVMLGGLLKDSRVED 162
            M  RNV++ T+++ G ++    E+  RLF  M       N V++   L       R+ +
Sbjct: 215 GMSHRNVITLTAVISGLIENELHEDGLRLFSLMRRGLVHPNSVTYLSALAACSGSQRIVE 274

Query: 163 ARKLFDMM----PVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYAR 218
            +++  ++       ++   + ++  Y + G +E+A  +F+   + + V+ T ++ G A+
Sbjct: 275 GQQIHALLWKYGIESELCIESALMDMYSKCGSIEDAWTIFESTTEVDEVSMTVILVGLAQ 334

Query: 219 NRRVDVARKLFEVMPERN---EVSWTAMLMGYTHSGRMREASEFFDAMPVK-----PVVA 270
           N   + A + F  M +     + +  + ++G +         +   ++ +K         
Sbjct: 335 NGSEEEAIQFFIRMLQAGVEIDANVVSAVLGVSFIDNSLGLGKQLHSLVIKRKFSGNTFV 394

Query: 271 CNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGA 330
            N +I  +   GD+  ++ VF +M +R+  +W++MI  + R G  L AL L+  M     
Sbjct: 395 NNGLINMYSKCGDLTDSQTVFRRMPKRNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEV 454

Query: 331 ALNFPXXXXXXXXXXXXXXXDHGR-------QVHARLVRSEFDQDLYVASALITMYVKCG 383
                               D GR       +VH    R+E        + +I M  + G
Sbjct: 455 KPTDVTFLSLLHACSHVGLIDKGRELLNEMKEVHGIEPRTEH------YTCIIDMLGRAG 508

Query: 384 DLVRAKWIFNRYPLK-DVVMWNSMITGYSQHG---LGEEALNVFRDMCLSGVPPDDISFI 439
            L  AK   +  PLK D  +W +++   S HG   +GE A     +      P    + I
Sbjct: 509 LLKEAKSFIDSLPLKPDCKIWQALLGACSFHGDTEVGEYA----AEQLFQTAPDSSSAHI 564

Query: 440 GVLSACSYSGKVKEGREIFESMK 462
            + +  S  GK KE  +  + MK
Sbjct: 565 LIANIYSSRGKWKERAKTIKRMK 587


>AT2G37310.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:15665102-15667075 REVERSE
           LENGTH=657
          Length = 657

 Score =  292 bits (747), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 179/607 (29%), Positives = 299/607 (49%), Gaps = 71/607 (11%)

Query: 66  QPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQ 125
           Q H  + +F   P+  + S   ++S + +     +A  VFD + VRN  S+ +++  Y  
Sbjct: 43  QLHARIVVFSIKPDNFLAS--KLISFYTRQDRFRQALHVFDEITVRNAFSYNALLIAYTS 100

Query: 126 EGNVEEAERLF--W----------RMPEKNVVSWTVM---------LGGLLKDSRVEDAR 164
                +A  LF  W            P+   +S  +          LG L +       R
Sbjct: 101 REMYFDAFSLFLSWIGSSCYSSDAARPDSISISCVLKALSGCDDFWLGSLARQVHGFVIR 160

Query: 165 KLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDV 224
             FD     DV     MI  Y +   +E AR +FDEM +R+VV+W +M+SGY+++   + 
Sbjct: 161 GGFD----SDVFVGNGMITYYTKCDNIESARKVFDEMSERDVVSWNSMISGYSQSGSFED 216

Query: 225 ARKLFEVMP-----ERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPV----VACNEMI 275
            +K+++ M      + N V+  ++      S  +    E    M    +      CN +I
Sbjct: 217 CKKMYKAMLACSDFKPNGVTVISVFQACGQSSDLIFGLEVHKKMIENHIQMDLSLCNAVI 276

Query: 276 MGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQ--------- 326
             +   G +D A+A+F++M E+D  T+ A+I  Y   G   EA+ LF+ M+         
Sbjct: 277 GFYAKCGSLDYARALFDEMSEKDSVTYGAIISGYMAHGLVKEAMALFSEMESIGLSTWNA 336

Query: 327 ----------------------REGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSE 364
                                 R G+  N                   G+++HA  +R+ 
Sbjct: 337 MISGLMQNNHHEEVINSFREMIRCGSRPNTVTLSSLLPSLTYSSNLKGGKEIHAFAIRNG 396

Query: 365 FDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFR 424
            D ++YV +++I  Y K G L+ A+ +F+    + ++ W ++IT Y+ HG  + A ++F 
Sbjct: 397 ADNNIYVTTSIIDNYAKLGFLLGAQRVFDNCKDRSLIAWTAIITAYAVHGDSDSACSLFD 456

Query: 425 DMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRA 484
            M   G  PDD++   VLSA ++SG     + IF+SM  KY +EPG+EHYACMV +L RA
Sbjct: 457 QMQCLGTKPDDVTLTAVLSAFAHSGDSDMAQHIFDSMLTKYDIEPGVEHYACMVSVLSRA 516

Query: 485 GQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLS 544
           G+++DA+E + KMP++P A VWG+LL        L++A  A ++L ++EP+N G Y +++
Sbjct: 517 GKLSDAMEFISKMPIDPIAKVWGALLNGASVLGDLEIARFACDRLFEMEPENTGNYTIMA 576

Query: 545 HMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKML 604
           ++Y   GRWE+ E+VR K+K   + K+PG SWIE EK    F+  D++C   +    +M 
Sbjct: 577 NLYTQAGRWEEAEMVRNKMKRIGLKKIPGTSWIETEKGLRSFIAKDSSCERSK----EMY 632

Query: 605 ERLDGLL 611
           E ++GL+
Sbjct: 633 EIIEGLV 639



 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/361 (22%), Positives = 158/361 (43%), Gaps = 59/361 (16%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQA----------------- 64
            G I+ Y +   IE+ARKVFDE     R   SWN+M++ Y Q+                 
Sbjct: 171 NGMITYYTKCDNIESARKVFDEMS--ERDVVSWNSMISGYSQSGSFEDCKKMYKAMLACS 228

Query: 65  -HQPH--QAVTLFETTPEKNIVSW--------------------NGMVSGFVKNGMVAEA 101
             +P+    +++F+   + + + +                    N ++  + K G +  A
Sbjct: 229 DFKPNGVTVISVFQACGQSSDLIFGLEVHKKMIENHIQMDLSLCNAVIGFYAKCGSLDYA 288

Query: 102 RRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVE 161
           R +FD M  ++ V++ +++ GY+  G V+EA  LF  M    + +W  M+ GL++++  E
Sbjct: 289 RALFDEMSEKDSVTYGAIISGYMAHGLVKEAMALFSEMESIGLSTWNAMISGLMQNNHHE 348

Query: 162 DARKLFDMM----PVKDVVAVTNMIGGYCEEGRLEEARAL----FDEMPKRNVVTWTTMV 213
           +    F  M       + V +++++        L+  + +           N+   T+++
Sbjct: 349 EVINSFREMIRCGSRPNTVTLSSLLPSLTYSSNLKGGKEIHAFAIRNGADNNIYVTTSII 408

Query: 214 SGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMP---VKP-VV 269
             YA+   +  A+++F+   +R+ ++WTA++  Y   G    A   FD M     KP  V
Sbjct: 409 DNYAKLGFLLGAQRVFDNCKDRSLIAWTAIITAYAVHGDSDSACSLFDQMQCLGTKPDDV 468

Query: 270 ACNEMIMGFGFDGDVDRAKAVFEKMRERDD-----GTWSAMIKVYERKGFELEALGLFAR 324
               ++  F   GD D A+ +F+ M  + D       ++ M+ V  R G   +A+   ++
Sbjct: 469 TLTAVLSAFAHSGDSDMAQHIFDSMLTKYDIEPGVEHYACMVSVLSRAGKLSDAMEFISK 528

Query: 325 M 325
           M
Sbjct: 529 M 529



 Score = 63.9 bits (154), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 107/237 (45%), Gaps = 30/237 (12%)

Query: 21  STGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFE----- 75
           +T  I  YA++G +  A++VFD      R+  +W A++ AY        A +LF+     
Sbjct: 404 TTSIIDNYAKLGFLLGAQRVFDNCK--DRSLIAWTAIITAYAVHGDSDSACSLFDQMQCL 461

Query: 76  -TTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVR-----NVVSWTSMVRGYVQEGNV 129
            T P+   V+   ++S F  +G    A+ +FD+M  +      V  +  MV    + G +
Sbjct: 462 GTKPDD--VTLTAVLSAFAHSGDSDMAQHIFDSMLTKYDIEPGVEHYACMVSVLSRAGKL 519

Query: 130 EEAERLFWRMPEKNVVS-WTVMLGGLLKDSRVEDAR----KLFDMMPVKDVVAVTNMIGG 184
            +A     +MP   +   W  +L G      +E AR    +LF+M P ++    T M   
Sbjct: 520 SDAMEFISKMPIDPIAKVWGALLNGASVLGDLEIARFACDRLFEMEP-ENTGNYTIMANL 578

Query: 185 YCEEGRLEEARALFDEMPKRNV-----VTWTTMVSGY----ARNRRVDVARKLFEVM 232
           Y + GR EEA  + ++M +  +      +W     G     A++   + +++++E++
Sbjct: 579 YTQAGRWEEAEMVRNKMKRIGLKKIPGTSWIETEKGLRSFIAKDSSCERSKEMYEII 635


>AT5G39350.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:15750929-15752962 FORWARD
           LENGTH=677
          Length = 677

 Score =  292 bits (747), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 196/623 (31%), Positives = 305/623 (48%), Gaps = 75/623 (12%)

Query: 28  YARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLF--------ETTPE 79
           YA  G I  ARK+F+E P    +  S+N ++  Y +    H A+++F        +  P+
Sbjct: 59  YALCGHITYARKLFEEMPQ--SSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPD 116

Query: 80  KNIVSWNGMVSGFVKN---GMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLF 136
                +    +G +K+   G+V   R +  +   R+     +++  Y+  G VE A  +F
Sbjct: 117 GYTYPFVAKAAGELKSMKLGLVVHGR-ILRSWFGRDKYVQNALLAMYMNFGKVEMARDVF 175

Query: 137 WRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDV----VAVTNM--IGGYC---E 187
             M  ++V+SW  M+ G  ++  + DA  +FD M  + V      + +M  + G+    E
Sbjct: 176 DVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLE 235

Query: 188 EGR----LEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAM 243
            GR    L E + L D++  +N      +V+ Y +  R+D AR +F+ M  R+ ++WT M
Sbjct: 236 MGRNVHKLVEEKRLGDKIEVKN-----ALVNMYLKCGRMDEARFVFDRMERRDVITWTCM 290

Query: 244 LMGYTHSGRMREASEFFDAMP---VKP--------VVACNE------------------- 273
           + GYT  G +  A E    M    V+P        V  C +                   
Sbjct: 291 INGYTEDGDVENALELCRLMQFEGVRPNAVTIASLVSVCGDALKVNDGKCLHGWAVRQQV 350

Query: 274 ---------MIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFAR 324
                    +I  +     VD    VF    +   G WSA+I    +     +ALGLF R
Sbjct: 351 YSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSAIIAGCVQNELVSDALGLFKR 410

Query: 325 MQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGD 384
           M+RE    N                      +H  L ++ F   L  A+ L+ +Y KCG 
Sbjct: 411 MRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKTGFMSSLDAATGLVHVYSKCGT 470

Query: 385 LVRAKWIFN----RYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIG 440
           L  A  IFN    ++  KDVV+W ++I+GY  HG G  AL VF +M  SGV P++I+F  
Sbjct: 471 LESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTS 530

Query: 441 VLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPME 500
            L+ACS+SG V+EG  +F  M   Y+      HY C+VDLLGRAG++++A  ++  +P E
Sbjct: 531 ALNACSHSGLVEEGLTLFRFMLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTIPFE 590

Query: 501 PDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVR 560
           P + VWG+LL AC TH  + L E+A  KL +LEP+N G YVLL+++YA+ GRW+D+E VR
Sbjct: 591 PTSTVWGALLAACVTHENVQLGEMAANKLFELEPENTGNYVLLANIYAALGRWKDMEKVR 650

Query: 561 EKIKTRSVIKLPGYSWIEVEKKA 583
             ++   + K PG+S IE+   +
Sbjct: 651 SMMENVGLRKKPGHSTIEIRSNS 673



 Score = 96.3 bits (238), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 153/370 (41%), Gaps = 65/370 (17%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFE-------TT 77
           ++ Y   G++E AR VFD   +  R   SWN M++ Y++    + A+ +F+         
Sbjct: 159 LAMYMNFGKVEMARDVFDVMKN--RDVISWNTMISGYYRNGYMNDALMMFDWMVNESVDL 216

Query: 78  PEKNIVSW--------------------------------NGMVSGFVKNGMVAEARRVF 105
               IVS                                 N +V+ ++K G + EAR VF
Sbjct: 217 DHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVF 276

Query: 106 DAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARK 165
           D M  R+V++WT M+ GY ++G+VE A  L   M  + V    V +  L+  S   DA K
Sbjct: 277 DRMERRDVITWTCMINGYTEDGDVENALELCRLMQFEGVRPNAVTIASLV--SVCGDALK 334

Query: 166 LFD----------MMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSG 215
           + D               D++  T++I  Y +  R++    +F    K +   W+ +++G
Sbjct: 335 VNDGKCLHGWAVRQQVYSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSAIIAG 394

Query: 216 YARNRRVDVARKLFEVM----PERNEVSWTAMLMGYTHSGRMREASEFFDAMP----VKP 267
             +N  V  A  LF+ M     E N  +  ++L  Y     +R+A      +     +  
Sbjct: 395 CVQNELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKTGFMSS 454

Query: 268 VVACNEMIMGFGFDGDVDRAKAVF----EKMRERDDGTWSAMIKVYERKGFELEALGLFA 323
           + A   ++  +   G ++ A  +F    EK + +D   W A+I  Y   G    AL +F 
Sbjct: 455 LDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFM 514

Query: 324 RMQREGAALN 333
            M R G   N
Sbjct: 515 EMVRSGVTPN 524


>AT4G39530.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:18374736-18377240 REVERSE
           LENGTH=834
          Length = 834

 Score =  291 bits (744), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 212/750 (28%), Positives = 347/750 (46%), Gaps = 171/750 (22%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLF-------ETT 77
           I+ Y+R G +  ARKVF++ P   R   SW+ MV+A        +++ +F       + +
Sbjct: 86  INLYSRAGGMVYARKVFEKMPE--RNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDS 143

Query: 78  PEKNIVS--------------W---------------------NGMVSGFVKNGMVAEAR 102
           P + I+S              W                       ++  ++K+G +  AR
Sbjct: 144 PNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYAR 203

Query: 103 RVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVS---------------- 146
            VFDA+P ++ V+WT+M+ G V+ G    + +LF+++ E NVV                 
Sbjct: 204 LVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILP 263

Query: 147 -----------------------WTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIG 183
                                    V++   +K  RV  A KLF+ MP K++++ T ++ 
Sbjct: 264 FLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLS 323

Query: 184 GYCEEGRLEEARALFDEMPK----------RNVVT---------WTTMVSGYA------- 217
           GY +    +EA  LF  M K           +++T         + T V  Y        
Sbjct: 324 GYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGN 383

Query: 218 ----RNRRVDV---------ARKLFEVMPERNEVSWTAMLMGYTHSG---RMREASEFFD 261
                N  +D+         ARK+F++    + V + AM+ GY+  G    + EA   F 
Sbjct: 384 DSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFR 443

Query: 262 AMPVKPV-------------------VACNEMIMG----FGFDGDV-------------- 284
            M  + +                   +  ++ I G    +G + D+              
Sbjct: 444 DMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCY 503

Query: 285 --DRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXX 342
               ++ VF++M+ +D   W++M   Y ++    EAL LF  +Q      +         
Sbjct: 504 CLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVT 563

Query: 343 XXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVM 402
                     G++ H +L++   + + Y+ +AL+ MY KCG    A   F+    +DVV 
Sbjct: 564 AAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVC 623

Query: 403 WNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMK 462
           WNS+I+ Y+ HG G++AL +   M   G+ P+ I+F+GVLSACS++G V++G + FE M 
Sbjct: 624 WNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELM- 682

Query: 463 CKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLA 522
            ++ +EP  EHY CMV LLGRAG++N A E++EKMP +P AIVW SLL  C     ++LA
Sbjct: 683 LRFGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVELA 742

Query: 523 EVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKK 582
           E A E     +PK++G + +LS++YASKG W + + VRE++K   V+K PG SWI + K+
Sbjct: 743 EHAAEMAILSDPKDSGSFTMLSNIYASKGMWTEAKKVRERMKVEGVVKEPGRSWIGINKE 802

Query: 583 AHMFVGGD-NNCHPEQPIIMKMLERLDGLL 611
            H+F+  D ++C   Q     + E LD LL
Sbjct: 803 VHIFLSKDKSHCKANQ-----IYEVLDDLL 827



 Score =  164 bits (415), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 117/452 (25%), Positives = 214/452 (47%), Gaps = 30/452 (6%)

Query: 86  NGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLF---WRMPEK 142
           N +++ + + G +  AR+VF+ MP RN+VSW++MV      G  EE+  +F   WR  + 
Sbjct: 83  NILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKD 142

Query: 143 NVVSWTVMLGGLLKDSRVEDAR---KLFDMMPV-------KDVVAVTNMIGGYCEEGRLE 192
           +   +  +L   ++     D R    +F +          +DV   T +I  Y ++G ++
Sbjct: 143 SPNEY--ILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNID 200

Query: 193 EARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERN---------EVSWTAM 243
            AR +FD +P+++ VTWTTM+SG  +  R  V+ +LF  + E N          V     
Sbjct: 201 YARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACS 260

Query: 244 LMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWS 303
           ++ +   G+   A      + +   +  N +I  +   G V  A  +F  M  ++  +W+
Sbjct: 261 ILPFLEGGKQIHAHILRYGLEMDASLM-NVLIDSYVKCGRVIAAHKLFNGMPNKNIISWT 319

Query: 304 AMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRS 363
            ++  Y++     EA+ LF  M + G   +                   G QVHA  +++
Sbjct: 320 TLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKA 379

Query: 364 EFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLG---EEAL 420
               D YV ++LI MY KC  L  A+ +F+ +   DVV++N+MI GYS+ G      EAL
Sbjct: 380 NLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEAL 439

Query: 421 NVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDL 480
           N+FRDM    + P  ++F+ +L A +    +   ++I   +  KY +   I   + ++D+
Sbjct: 440 NIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQI-HGLMFKYGLNLDIFAGSALIDV 498

Query: 481 LGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGA 512
                 + D+  + ++M ++ D ++W S+   
Sbjct: 499 YSNCYCLKDSRLVFDEMKVK-DLVIWNSMFAG 529



 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 97/193 (50%), Gaps = 12/193 (6%)

Query: 356 VHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGL 415
           VH +++    + D Y+++ LI +Y + G +V A+ +F + P +++V W++M++  + HG+
Sbjct: 66  VHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGI 125

Query: 416 GEEALNVFRDMCLS-GVPPDDISFIGVLSACSYSGKVKEGREI---FESMKCKYQVEPGI 471
            EE+L VF +   +    P++      + AC  SG    GR +    +S   K   +  +
Sbjct: 126 YEESLVVFLEFWRTRKDSPNEYILSSFIQAC--SGLDGRGRWMVFQLQSFLVKSGFDRDV 183

Query: 472 EHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQ 531
                ++D   + G ++ A  + + +P E   + W +++  C   +K+  + V+++   Q
Sbjct: 184 YVGTLLIDFYLKDGNIDYARLVFDALP-EKSTVTWTTMISGC---VKMGRSYVSLQLFYQ 239

Query: 532 LEPKNAGP--YVL 542
           L   N  P  Y+L
Sbjct: 240 LMEDNVVPDGYIL 252


>AT5G55740.1 | Symbols: CRR21 | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:22561941-22564433 REVERSE
           LENGTH=830
          Length = 830

 Score =  286 bits (731), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 177/608 (29%), Positives = 315/608 (51%), Gaps = 32/608 (5%)

Query: 28  YARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNG 87
           Y + G +++A KVFDE P   R   +WNA++  Y Q  +  +A+ LF    ++ +     
Sbjct: 218 YGKCGVLDDASKVFDEIPD--RNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRV 275

Query: 88  MVS---------GFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWR 138
            VS         G V+ G  + A  + + M + N++  TS++  Y + G +E AE +F R
Sbjct: 276 TVSTCLSASANMGGVEEGKQSHAIAIVNGMELDNILG-TSLLNFYCKVGLIEYAEMVFDR 334

Query: 139 MPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVK----DVVAVTNMIGGYCEEGRLEEA 194
           M EK+VV+W +++ G ++   VEDA  +  +M ++    D V +  ++        L+  
Sbjct: 335 MFEKDVVTWNLIISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLG 394

Query: 195 RAL----FDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHS 250
           + +         + ++V  +T++  YA+   +  A+K+F+   E++ + W  +L  Y  S
Sbjct: 395 KEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAES 454

Query: 251 GRMREASEFFDAMPVK----PVVACNEMIMGFGFDGDVDRAKAVFEKMRER----DDGTW 302
           G   EA   F  M ++     V+  N +I+    +G VD AK +F +M+      +  +W
Sbjct: 455 GLSGEALRLFYGMQLEGVPPNVITWNLIILSLLRNGQVDEAKDMFLQMQSSGIIPNLISW 514

Query: 303 SAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVR 362
           + M+    + G   EA+    +MQ  G   N                   GR +H  ++R
Sbjct: 515 TTMMNGMVQNGCSEEAILFLRKMQESGLRPNAFSITVALSACAHLASLHIGRTIHGYIIR 574

Query: 363 S-EFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALN 421
           + +    + + ++L+ MY KCGD+ +A+ +F      ++ + N+MI+ Y+ +G  +EA+ 
Sbjct: 575 NLQHSSLVSIETSLVDMYAKCGDINKAEKVFGSKLYSELPLSNAMISAYALYGNLKEAIA 634

Query: 422 VFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLL 481
           ++R +   G+ PD+I+   VLSAC+++G + +  EIF  +  K  ++P +EHY  MVDLL
Sbjct: 635 LYRSLEGVGLKPDNITITNVLSACNHAGDINQAIEIFTDIVSKRSMKPCLEHYGLMVDLL 694

Query: 482 GRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYV 541
             AG+   A+ ++E+MP +PDA +  SL+ +C    K +L +    KL + EP+N+G YV
Sbjct: 695 ASAGETEKALRLIEEMPFKPDARMIQSLVASCNKQRKTELVDYLSRKLLESEPENSGNYV 754

Query: 542 LLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEV--EKKAHMFVGGDNNCHPEQPI 599
            +S+ YA +G W++V  +RE +K + + K PG SWI++  E+  H+FV  D   H     
Sbjct: 755 TISNAYAVEGSWDEVVKMREMMKAKGLKKKPGCSWIQITGEEGVHVFVANDKT-HTRINE 813

Query: 600 IMKMLERL 607
           I  ML  L
Sbjct: 814 IQMMLALL 821



 Score =  159 bits (403), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 117/433 (27%), Positives = 209/433 (48%), Gaps = 22/433 (5%)

Query: 101 ARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM------PEKNVVSWTVMLGGL 154
           A  +F  + VRNV SW +++    + G  E A   F  M      P+  VV       G 
Sbjct: 126 AEVLFSKLRVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGA 185

Query: 155 LKDSRVEDARKLFDMMP-VKDVVAVTNMIGG-YCEEGRLEEARALFDEMPKRNVVTWTTM 212
           LK SR       + +   ++D V V + +   Y + G L++A  +FDE+P RN V W  +
Sbjct: 186 LKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVFDEIPDRNAVAWNAL 245

Query: 213 VSGYARNRRVDVARKLFEVM------PERNEVSW---TAMLMGYTHSGRMREASEFFDAM 263
           + GY +N + + A +LF  M      P R  VS     +  MG    G+   A    + M
Sbjct: 246 MVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVEEGKQSHAIAIVNGM 305

Query: 264 PVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFA 323
            +  ++    ++  +   G ++ A+ VF++M E+D  TW+ +I  Y ++G   +A+ +  
Sbjct: 306 ELDNILG-TSLLNFYCKVGLIEYAEMVFDRMFEKDVVTWNLIISGYVQQGLVEDAIYMCQ 364

Query: 324 RMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCG 383
            M+ E    +                   G++V    +R  F+ D+ +AS ++ MY KCG
Sbjct: 365 LMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCG 424

Query: 384 DLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLS 443
            +V AK +F+    KD+++WN+++  Y++ GL  EAL +F  M L GVPP+ I++  ++ 
Sbjct: 425 SIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSGEALRLFYGMQLEGVPPNVITWNLIIL 484

Query: 444 ACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMP---ME 500
           +   +G+V E +++F  M+    + P +  +  M++ + + G   +A+  + KM    + 
Sbjct: 485 SLLRNGQVDEAKDMFLQMQSS-GIIPNLISWTTMMNGMVQNGCSEEAILFLRKMQESGLR 543

Query: 501 PDAIVWGSLLGAC 513
           P+A      L AC
Sbjct: 544 PNAFSITVALSAC 556



 Score =  102 bits (253), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 96/392 (24%), Positives = 175/392 (44%), Gaps = 49/392 (12%)

Query: 182 IGGYCEEGRLEEARALFDEMPKRNV----VTWTTMVSGYARNRRVDVARKLFEVMPERNE 237
           +   C+ G ++EA +L  EM  RN+      +  ++ G    R +   +++   + +   
Sbjct: 42  VSSLCKNGEIKEALSLVTEMDFRNLRIGPEIYGEILQGCVYERDLSTGKQIHARILK--- 98

Query: 238 VSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRER 297
                       +G     +E+ +   V     C+ +          + A+ +F K+R R
Sbjct: 99  ------------NGDFYARNEYIETKLVIFYAKCDAL----------EIAEVLFSKLRVR 136

Query: 298 DDGTWSAMIKVYERKGF-ELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQV 356
           +  +W+A+I V  R G  E   +G    ++ E    NF                  GR V
Sbjct: 137 NVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNF-VVPNVCKACGALKWSRFGRGV 195

Query: 357 HARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLG 416
           H  +V+S  +  ++VAS+L  MY KCG L  A  +F+  P ++ V WN+++ GY Q+G  
Sbjct: 196 HGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVFDEIPDRNAVAWNALMVGYVQNGKN 255

Query: 417 EEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGRE-----IFESMKCKYQVEPGI 471
           EEA+ +F DM   GV P  ++    LSA +  G V+EG++     I   M+    +   +
Sbjct: 256 EEAIRLFSDMRKQGVEPTRVTVSTCLSASANMGGVEEGKQSHAIAIVNGMELDNILGTSL 315

Query: 472 EHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVE--KL 529
            ++ C V L+  A  V D +        E D + W  ++     +++  L E A+   +L
Sbjct: 316 LNFYCKVGLIEYAEMVFDRM-------FEKDVVTWNLIISG---YVQQGLVEDAIYMCQL 365

Query: 530 AQLEPKNAGPYVLLSHMYASKGRWEDVEVVRE 561
            +LE K     V L+ + ++  R E++++ +E
Sbjct: 366 MRLE-KLKYDCVTLATLMSAAARTENLKLGKE 396



 Score = 82.4 bits (202), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 69/329 (20%), Positives = 141/329 (42%), Gaps = 58/329 (17%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAV---------- 71
           T  ++ Y ++G IE A  VFD      +   +WN +++ Y Q      A+          
Sbjct: 313 TSLLNFYCKVGLIEYAEMVFDRM--FEKDVVTWNLIISGYVQQGLVEDAIYMCQLMRLEK 370

Query: 72  ---------TLFETTP--------------------EKNIVSWNGMVSGFVKNGMVAEAR 102
                    TL                         E +IV  + ++  + K G + +A+
Sbjct: 371 LKYDCVTLATLMSAAARTENLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAK 430

Query: 103 RVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEK----NVVSWTVMLGGLLKDS 158
           +VFD+   ++++ W +++  Y + G   EA RLF+ M  +    NV++W +++  LL++ 
Sbjct: 431 KVFDSTVEKDLILWNTLLAAYAESGLSGEALRLFYGMQLEGVPPNVITWNLIILSLLRNG 490

Query: 159 RVEDARKLFDMMP----VKDVVAVTNMIGGYCEEGRLEEARALFDEMPKR----NVVTWT 210
           +V++A+ +F  M     + ++++ T M+ G  + G  EEA     +M +     N  + T
Sbjct: 491 QVDEAKDMFLQMQSSGIIPNLISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAFSIT 550

Query: 211 TMVSGYARNRRVDVARK----LFEVMPERNEVSW-TAMLMGYTHSGRMREASEFFDAMPV 265
             +S  A    + + R     +   +   + VS  T+++  Y   G + +A + F +   
Sbjct: 551 VALSACAHLASLHIGRTIHGYIIRNLQHSSLVSIETSLVDMYAKCGDINKAEKVFGSKLY 610

Query: 266 KPVVACNEMIMGFGFDGDVDRAKAVFEKM 294
             +   N MI  +   G++  A A++  +
Sbjct: 611 SELPLSNAMISAYALYGNLKEAIALYRSL 639


>AT1G56570.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:21195804-21197721 FORWARD
           LENGTH=611
          Length = 611

 Score =  286 bits (731), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 181/572 (31%), Positives = 295/572 (51%), Gaps = 25/572 (4%)

Query: 78  PEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFW 137
           P+K+ +    ++  + + G+V EAR +FD MP R+VV+WT+M+ GY        A   F 
Sbjct: 41  PKKHHILATNLIVSYFEKGLVEEARSLFDEMPDRDVVAWTAMITGYASSNYNARAWECFH 100

Query: 138 RMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGG-YCEEG------- 189
            M ++        L  +LK  R  + + L     V  VV    M G  Y +         
Sbjct: 101 EMVKQGTSPNEFTLSSVLKSCR--NMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYAT 158

Query: 190 ---RLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLF-EVMPERNEVSWTAMLM 245
               +E A  +F ++  +N VTWTT+++G+          K++ +++ E  EV+   + +
Sbjct: 159 CSVTMEAACLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENAEVTPYCITI 218

Query: 246 GYTHSGRMREAS--EFFDAMPVKPVVACNEMIMGFGFD-----GDVDRAKAVFEKMRERD 298
               S  +   +  +   A  +K     N  +M    D     G +  AK  F +M ++D
Sbjct: 219 AVRASASIDSVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDKD 278

Query: 299 DGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHA 358
             TW+ +I   ER     EAL +F R + +G   N                 + G+Q+H 
Sbjct: 279 LITWNTLISELERSDSS-EALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHG 337

Query: 359 RLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRY-PLKDVVMWNSMITGYSQHGLGE 417
           R+ R  F++++ +A+ALI MY KCG++  ++ +F      +++V W SM+ GY  HG G 
Sbjct: 338 RIFRRGFNKNVELANALIDMYAKCGNIPDSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGA 397

Query: 418 EALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACM 477
           EA+ +F  M  SG+ PD I F+ VLSAC ++G V++G + F  M+ +Y + P  + Y C+
Sbjct: 398 EAVELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCV 457

Query: 478 VDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDL-AEVAVEKLAQLEPKN 536
           VDLLGRAG++ +A E+VE+MP +PD   WG++LGAC+ H    L + +A  K+ +L+PK 
Sbjct: 458 VDLLGRAGKIGEAYELVERMPFKPDESTWGAILGACKAHKHNGLISRLAARKVMELKPKM 517

Query: 537 AGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPE 596
            G YV+LS++YA++G+W D   VR+ ++     K  G SWI VE +   F   D  C P 
Sbjct: 518 VGTYVMLSYIYAAEGKWVDFARVRKMMRMMGNKKEAGMSWILVENQVFSFAVSDKMC-PN 576

Query: 597 QPIIMKMLERLDGLLRDAGYSPDHSFVLHDVE 628
              +  +L  L    R+AGY P+   +++D E
Sbjct: 577 ASSVYSVLGLLIEETREAGYVPELDSLVNDQE 608



 Score = 88.6 bits (218), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 119/261 (45%), Gaps = 8/261 (3%)

Query: 255 EASEFFDAMPVKP----VVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYE 310
           E+S+  +  P KP    ++A N +I+ +   G V+ A+++F++M +RD   W+AMI  Y 
Sbjct: 29  ESSQNTEYPPYKPKKHHILATN-LIVSYFEKGLVEEARSLFDEMPDRDVVAWTAMITGYA 87

Query: 311 RKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLY 370
              +   A   F  M ++G + N                  +G  VH  +V+   +  LY
Sbjct: 88  SSNYNARAWECFHEMVKQGTSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLY 147

Query: 371 VASALITMYVKCGDLVRAK-WIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLS 429
           V +A++ MY  C   + A   IF    +K+ V W ++ITG++  G G   L +++ M L 
Sbjct: 148 VDNAMMNMYATCSVTMEAACLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLE 207

Query: 430 GVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVND 489
                       + A +    V  G++I  S+  K   +  +     ++DL  R G +++
Sbjct: 208 NAEVTPYCITIAVRASASIDSVTTGKQIHASV-IKRGFQSNLPVMNSILDLYCRCGYLSE 266

Query: 490 AVEIVEKMPMEPDAIVWGSLL 510
           A     +M  + D I W +L+
Sbjct: 267 AKHYFHEME-DKDLITWNTLI 286



 Score = 72.8 bits (177), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 93/460 (20%), Positives = 187/460 (40%), Gaps = 78/460 (16%)

Query: 21  STGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFE----- 75
           +T  I  Y   G +E AR +FDE P   R   +W AM+  Y  ++   +A   F      
Sbjct: 48  ATNLIVSYFEKGLVEEARSLFDEMP--DRDVVAWTAMITGYASSNYNARAWECFHEMVKQ 105

Query: 76  -TTPEK-------------NIVSWNGMVSG-----------FVKNGM----------VAE 100
            T+P +              ++++  +V G           +V N M          +  
Sbjct: 106 GTSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYATCSVTMEA 165

Query: 101 ARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRV 160
           A  +F  + V+N V+WT+++ G+   G+     +++ +M  +N       +   ++ S  
Sbjct: 166 ACLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENAEVTPYCITIAVRASAS 225

Query: 161 EDA-------------RKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVV 207
            D+             R     +PV     + +++  YC  G L EA+  F EM  ++++
Sbjct: 226 IDSVTTGKQIHASVIKRGFQSNLPV-----MNSILDLYCRCGYLSEAKHYFHEMEDKDLI 280

Query: 208 TWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEF---- 259
           TW T++S   R+   + A  +F+    +    N  ++T+++    +   +    +     
Sbjct: 281 TWNTLISELERSDSSE-ALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRI 339

Query: 260 FDAMPVKPVVACNEMIMGFGFDGDVDRAKAVF-EKMRERDDGTWSAMIKVYERKGFELEA 318
           F     K V   N +I  +   G++  ++ VF E +  R+  +W++M+  Y   G+  EA
Sbjct: 340 FRRGFNKNVELANALIDMYAKCGNIPDSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGAEA 399

Query: 319 LGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEF----DQDLYVASA 374
           + LF +M   G   +                 + G + +  ++ SE+    D+D+Y  + 
Sbjct: 400 VELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKGLK-YFNVMESEYGINPDRDIY--NC 456

Query: 375 LITMYVKCGDLVRAKWIFNRYPLK-DVVMWNSMITGYSQH 413
           ++ +  + G +  A  +  R P K D   W +++     H
Sbjct: 457 VVDLLGRAGKIGEAYELVERMPFKPDESTWGAILGACKAH 496


>AT5G37570.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr5:14924494-14926146 REVERSE
           LENGTH=550
          Length = 550

 Score =  282 bits (721), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 165/489 (33%), Positives = 257/489 (52%), Gaps = 20/489 (4%)

Query: 104 VFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM-------PEKNVVSWTVMLGGLLK 156
           VF+ +P      W  +++GY  +    E   +  RM       P++      + +     
Sbjct: 65  VFERVPSPGTYLWNHLIKGYSNKFLFFETVSILMRMMRTGLARPDEYTFPLVMKVCSNNG 124

Query: 157 DSRVEDA------RKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWT 210
             RV  +      R  FD    KDVV  T+ +  Y +   L  AR +F EMP+RN V+WT
Sbjct: 125 QVRVGSSVHGLVLRIGFD----KDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSWT 180

Query: 211 TMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVA 270
            +V  Y ++  ++ A+ +F++MPERN  SW A++ G   SG +  A + FD MP + +++
Sbjct: 181 ALVVAYVKSGELEEAKSMFDLMPERNLGSWNALVDGLVKSGDLVNAKKLFDEMPKRDIIS 240

Query: 271 CNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGA 330
              MI G+   GD+  A+ +FE+ R  D   WSA+I  Y + G   EA  +F+ M  +  
Sbjct: 241 YTSMIDGYAKGGDMVSARDLFEEARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNV 300

Query: 331 ALNFPXXXXXXXXXXXXXXXDHGRQVHARLVR--SEFDQDLYVASALITMYVKCGDLVRA 388
             +                 +   +V + L +  ++F    YV  ALI M  KCG + RA
Sbjct: 301 KPDEFIMVGLMSACSQMGCFELCEKVDSYLHQRMNKFSSH-YVVPALIDMNAKCGHMDRA 359

Query: 389 KWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYS 448
             +F   P +D+V + SM+ G + HG G EA+ +F  M   G+ PD+++F  +L  C  S
Sbjct: 360 AKLFEEMPQRDLVSYCSMMEGMAIHGCGSEAIRLFEKMVDEGIVPDEVAFTVILKVCGQS 419

Query: 449 GKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGS 508
             V+EG   FE M+ KY +    +HY+C+V+LL R G++ +A E+++ MP E  A  WGS
Sbjct: 420 RLVEEGLRYFELMRKKYSILASPDHYSCIVNLLSRTGKLKEAYELIKSMPFEAHASAWGS 479

Query: 509 LLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSV 568
           LLG C  H   ++AEV    L +LEP++AG YVLLS++YA+  RW DV  +R+K+    +
Sbjct: 480 LLGGCSLHGNTEIAEVVARHLFELEPQSAGSYVLLSNIYAALDRWTDVAHLRDKMNENGI 539

Query: 569 IKLPGYSWI 577
            K+ G SWI
Sbjct: 540 TKICGRSWI 548



 Score =  145 bits (366), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/372 (28%), Positives = 177/372 (47%), Gaps = 37/372 (9%)

Query: 79  EKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWR 138
           +K++V     V  + K   +  AR+VF  MP RN VSWT++V  YV+ G +EEA+ +F  
Sbjct: 142 DKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSWTALVVAYVKSGELEEAKSMFDL 201

Query: 139 MPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALF 198
           MPE+N+ SW  ++ GL+K   + +A+KLFD MP +D+++ T+MI GY + G +  AR LF
Sbjct: 202 MPERNLGSWNALVDGLVKSGDLVNAKKLFDEMPKRDIISYTSMIDGYAKGGDMVSARDLF 261

Query: 199 DEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMG------------ 246
           +E    +V  W+ ++ GYA+N + + A K+F  M  +N      +++G            
Sbjct: 262 EEARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGLMSACSQMGCFE 321

Query: 247 -------YTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDD 299
                  Y H    + +S +     +     C          G +DRA  +FE+M +RD 
Sbjct: 322 LCEKVDSYLHQRMNKFSSHYVVPALIDMNAKC----------GHMDRAAKLFEEMPQRDL 371

Query: 300 GTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHAR 359
            ++ +M++     G   EA+ LF +M  EG   +                 + G + +  
Sbjct: 372 VSYCSMMEGMAIHGCGSEAIRLFEKMVDEGIVPDEVAFTVILKVCGQSRLVEEGLR-YFE 430

Query: 360 LVRSEF----DQDLYVASALITMYVKCGDLVRAKWIFNRYPLK-DVVMWNSMITGYSQHG 414
           L+R ++      D Y  S ++ +  + G L  A  +    P +     W S++ G S HG
Sbjct: 431 LMRKKYSILASPDHY--SCIVNLLSRTGKLKEAYELIKSMPFEAHASAWGSLLGGCSLHG 488

Query: 415 LGEEALNVFRDM 426
             E A  V R +
Sbjct: 489 NTEIAEVVARHL 500



 Score =  134 bits (336), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 160/328 (48%), Gaps = 20/328 (6%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKN 81
           T  +  Y +   + +ARKVF E P   R   SW A+V AY ++ +  +A ++F+  PE+N
Sbjct: 149 TSFVDFYGKCKDLFSARKVFGEMPE--RNAVSWTALVVAYVKSGELEEAKSMFDLMPERN 206

Query: 82  IVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPE 141
           + SWN +V G VK+G +  A+++FD MP R+++S+TSM+ GY + G++  A  LF     
Sbjct: 207 LGSWNALVDGLVKSGDLVNAKKLFDEMPKRDIISYTSMIDGYAKGGDMVSARDLFEEARG 266

Query: 142 KNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDV----VAVTNMIGGYCEEGRLEEARAL 197
            +V +W+ ++ G  ++ +  +A K+F  M  K+V      +  ++    + G  E    +
Sbjct: 267 VDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGLMSACSQMGCFELCEKV 326

Query: 198 FDEMPKR-----NVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGR 252
              + +R     +      ++   A+   +D A KLFE MP+R+ VS+ +M+ G    G 
Sbjct: 327 DSYLHQRMNKFSSHYVVPALIDMNAKCGHMDRAAKLFEEMPQRDLVSYCSMMEGMAIHGC 386

Query: 253 MREASEFFDAMP----VKPVVACNEMIMGFGFDGDVDRAKAVFEKMRER-----DDGTWS 303
             EA   F+ M     V   VA   ++   G    V+     FE MR++         +S
Sbjct: 387 GSEAIRLFEKMVDEGIVPDEVAFTVILKVCGQSRLVEEGLRYFELMRKKYSILASPDHYS 446

Query: 304 AMIKVYERKGFELEALGLFARMQREGAA 331
            ++ +  R G   EA  L   M  E  A
Sbjct: 447 CIVNLLSRTGKLKEAYELIKSMPFEAHA 474



 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 100/220 (45%), Gaps = 7/220 (3%)

Query: 352 HGRQVHARLVRSEFDQDLYV-ASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGY 410
           H  Q+HAR++R   +QD  + +  + +       L  +  +F R P     +WN +I GY
Sbjct: 25  HLNQIHARIIRKGLEQDQNLISIFISSSSSSSSSLSYSSSVFERVPSPGTYLWNHLIKGY 84

Query: 411 SQHGLGEEALNVFRDMCLSGVP-PDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEP 469
           S   L  E +++   M  +G+  PD+ +F  V+  CS +G+V+ G  +   +  +   + 
Sbjct: 85  SNKFLFFETVSILMRMMRTGLARPDEYTFPLVMKVCSNNGQVRVGSSV-HGLVLRIGFDK 143

Query: 470 GIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKL 529
            +      VD  G+   +  A ++  +MP E +A+ W +L+ A   ++K    E A    
Sbjct: 144 DVVVGTSFVDFYGKCKDLFSARKVFGEMP-ERNAVSWTALVVA---YVKSGELEEAKSMF 199

Query: 530 AQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVI 569
             +  +N G +  L       G   + + + +++  R +I
Sbjct: 200 DLMPERNLGSWNALVDGLVKSGDLVNAKKLFDEMPKRDII 239


>AT5G19020.1 | Symbols: MEF18 | mitochondrial editing factor  18 |
           chr5:6352771-6354828 REVERSE LENGTH=685
          Length = 685

 Score =  282 bits (721), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 185/603 (30%), Positives = 315/603 (52%), Gaps = 55/603 (9%)

Query: 17  FQCTSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFET 76
           + C S   ++ YA+   + +A  VF +  H    ++S+N MV  Y ++ +   A+ LF+ 
Sbjct: 77  YICNSV--LNMYAKCRLLADAESVFRD--HAKLDSASFNIMVDGYVRSRRLWDALKLFDV 132

Query: 77  TPEKNIVSWNGMVSGFVKNGMVAEARRVFDAM----------PVRNVVS--------W-- 116
            PE++ VS+  ++ G+ +N   +EA  +F  M           +  V+S        W  
Sbjct: 133 MPERSCVSYTTLIKGYAQNNQWSEAMELFREMRNLGIMLNEVTLATVISACSHLGGIWDC 192

Query: 117 -------------------TSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKD 157
                              T+++  Y     +++A +LF  MPE+N+V+W VML G  K 
Sbjct: 193 RMLQSLAIKLKLEGRVFVSTNLLHMYCLCLCLKDARKLFDEMPERNLVTWNVMLNGYSKA 252

Query: 158 SRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMP----KRNVVTWTTMV 213
             +E A +LFD +  KD+V+   MI G   + +L+EA   + EM     K + V    ++
Sbjct: 253 GLIEQAEELFDQITEKDIVSWGTMIDGCLRKNQLDEALVYYTEMLRCGMKPSEVMMVDLL 312

Query: 214 SGYARNRRVDVARKLFEVMPERN----EVSWTAMLMGYTHSGRMREASEFFDAMPVKPVV 269
           S  AR+       +L   + +R     +     ++  Y  S  ++ A + F+A     + 
Sbjct: 313 SASARSVGSSKGLQLHGTIVKRGFDCYDFLQATIIHFYAVSNDIKLALQQFEASVKDHIA 372

Query: 270 ACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARM-QRE 328
           + N +I GF  +G V++A+ VF++  ++D  +W+AMI  Y +      AL LF  M    
Sbjct: 373 SRNALIAGFVKNGMVEQAREVFDQTHDKDIFSWNAMISGYAQSLSPQLALHLFREMISSS 432

Query: 329 GAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRA 388
               +                 + G++ H  L  S    +  + +A+I MY KCG +  A
Sbjct: 433 QVKPDAITMVSVFSAISSLGSLEEGKRAHDYLNFSTIPPNDNLTAAIIDMYAKCGSIETA 492

Query: 389 KWIFNR---YPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSAC 445
             IF++        +  WN++I G + HG  + AL+++ D+    + P+ I+F+GVLSAC
Sbjct: 493 LNIFHQTKNISSSTISPWNAIICGSATHGHAKLALDLYSDLQSLPIKPNSITFVGVLSAC 552

Query: 446 SYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIV 505
            ++G V+ G+  FESMK  + +EP I+HY CMVDLLG+AG++ +A E+++KMP++ D ++
Sbjct: 553 CHAGLVELGKTYFESMKSDHGIEPDIKHYGCMVDLLGKAGRLEEAKEMIKKMPVKADVMI 612

Query: 506 WGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKT 565
           WG LL A RTH  +++AE+A  +LA ++P + G  V+LS++YA  GRWEDV +VRE+++T
Sbjct: 613 WGMLLSASRTHGNVEIAELAATELAAIDPSHGGCKVMLSNVYADAGRWEDVALVREEMRT 672

Query: 566 RSV 568
           R V
Sbjct: 673 RDV 675



 Score = 73.2 bits (178), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 102/215 (47%), Gaps = 36/215 (16%)

Query: 353 GRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRY----------------- 395
           GRQ+H R+++S  D + Y+ ++++ MY KC  L  A+ +F  +                 
Sbjct: 60  GRQIHCRVLKSGLDSNGYICNSVLNMYAKCRLLADAESVFRDHAKLDSASFNIMVDGYVR 119

Query: 396 --------------PLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGV 441
                         P +  V + ++I GY+Q+    EA+ +FR+M   G+  ++++   V
Sbjct: 120 SRRLWDALKLFDVMPERSCVSYTTLIKGYAQNNQWSEAMELFREMRNLGIMLNEVTLATV 179

Query: 442 LSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEP 501
           +SACS+ G + + R + +S+  K ++E  +     ++ +      + DA ++ ++MP E 
Sbjct: 180 ISACSHLGGIWDCR-MLQSLAIKLKLEGRVFVSTNLLHMYCLCLCLKDARKLFDEMP-ER 237

Query: 502 DAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKN 536
           + + W  +L     + K  L E A E   Q+  K+
Sbjct: 238 NLVTWNVMLNG---YSKAGLIEQAEELFDQITEKD 269


>AT3G14730.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:4949385-4951346 REVERSE
           LENGTH=653
          Length = 653

 Score =  281 bits (719), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 171/533 (32%), Positives = 282/533 (52%), Gaps = 30/533 (5%)

Query: 88  MVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSW 147
           +V+ + K G++  A  VF     R+V  + +++ G+V  G+  +A   +  M    ++  
Sbjct: 102 LVNMYAKCGLMRRAVLVFGGSE-RDVFGYNALISGFVVNGSPLDAMETYREMRANGILPD 160

Query: 148 TVMLGGLLKDSRVEDARKLFDMMPV----------KDVVAVTNMIGGYCEEGRLEEARAL 197
                 LLK S   DA +L D+  V           D    + ++  Y +   +E+A+ +
Sbjct: 161 KYTFPSLLKGS---DAMELSDVKKVHGLAFKLGFDSDCYVGSGLVTSYSKFMSVEDAQKV 217

Query: 198 FDEMPKRN-VVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGR 252
           FDE+P R+  V W  +V+GY++  R + A  +F  M E     +  + T++L  +T SG 
Sbjct: 218 FDELPDRDDSVLWNALVNGYSQIFRFEDALLVFSKMREEGVGVSRHTITSVLSAFTVSGD 277

Query: 253 MREASEFFDAMPVKP-----VVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIK 307
           +         + VK      +V  N +I  +G    ++ A ++FE M ERD  TW++++ 
Sbjct: 278 IDNGRSIH-GLAVKTGSGSDIVVSNALIDMYGKSKWLEEANSIFEAMDERDLFTWNSVLC 336

Query: 308 VYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEF-- 365
           V++  G     L LF RM   G   +                   GR++H  ++ S    
Sbjct: 337 VHDYCGDHDGTLALFERMLCSGIRPDIVTLTTVLPTCGRLASLRQGREIHGYMIVSGLLN 396

Query: 366 --DQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVF 423
               + ++ ++L+ MYVKCGDL  A+ +F+   +KD   WN MI GY     GE AL++F
Sbjct: 397 RKSSNEFIHNSLMDMYVKCGDLRDARMVFDSMRVKDSASWNIMINGYGVQSCGELALDMF 456

Query: 424 RDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGR 483
             MC +GV PD+I+F+G+L ACS+SG + EGR     M+  Y + P  +HYAC++D+LGR
Sbjct: 457 SCMCRAGVKPDEITFVGLLQACSHSGFLNEGRNFLAQMETVYNILPTSDHYACVIDMLGR 516

Query: 484 AGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLL 543
           A ++ +A E+    P+  + +VW S+L +CR H   DLA VA ++L +LEP++ G YVL+
Sbjct: 517 ADKLEEAYELAISKPICDNPVVWRSILSSCRLHGNKDLALVAGKRLHELEPEHCGGYVLM 576

Query: 544 SHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPE 596
           S++Y   G++E+V  VR+ ++ ++V K PG SWI ++   H F  G N  HPE
Sbjct: 577 SNVYVEAGKYEEVLDVRDAMRQQNVKKTPGCSWIVLKNGVHTFFTG-NQTHPE 628



 Score = 84.0 bits (206), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/312 (21%), Positives = 132/312 (42%), Gaps = 63/312 (20%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLF------- 74
           +G ++ Y++   +E+A+KVFDE P     +  WNA+V  Y Q  +   A+ +F       
Sbjct: 199 SGLVTSYSKFMSVEDAQKVFDELPD-RDDSVLWNALVNGYSQIFRFEDALLVFSKMREEG 257

Query: 75  --------------------------------ETTPEKNIVSWNGMVSGFVKNGMVAEAR 102
                                           +T    +IV  N ++  + K+  + EA 
Sbjct: 258 VGVSRHTITSVLSAFTVSGDIDNGRSIHGLAVKTGSGSDIVVSNALIDMYGKSKWLEEAN 317

Query: 103 RVFDAMPVRNVVSWTSM--VRGYV--QEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDS 158
            +F+AM  R++ +W S+  V  Y    +G +   ER+       ++V+ T +L    + +
Sbjct: 318 SIFEAMDERDLFTWNSVLCVHDYCGDHDGTLALFERMLCSGIRPDIVTLTTVLPTCGRLA 377

Query: 159 RVEDARKLFDMMPVKDVVAV--------TNMIGGYCEEGRLEEARALFDEMPKRNVVTWT 210
            +   R++   M V  ++           +++  Y + G L +AR +FD M  ++  +W 
Sbjct: 378 SLRQGREIHGYMIVSGLLNRKSSNEFIHNSLMDMYVKCGDLRDARMVFDSMRVKDSASWN 437

Query: 211 TMVSGYARNRRVDVARKLFEVMP----ERNEVSWTAMLMGYTHSGRMREASEF------- 259
            M++GY      ++A  +F  M     + +E+++  +L   +HSG + E   F       
Sbjct: 438 IMINGYGVQSCGELALDMFSCMCRAGVKPDEITFVGLLQACSHSGFLNEGRNFLAQMETV 497

Query: 260 FDAMPVKPVVAC 271
           ++ +P     AC
Sbjct: 498 YNILPTSDHYAC 509



 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 92/180 (51%), Gaps = 4/180 (2%)

Query: 353 GRQVHARLVRSEF-DQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYS 411
           G+Q+H  +VR  F D      ++L+ MY KCG + RA  +F     +DV  +N++I+G+ 
Sbjct: 79  GQQIHGFMVRKGFLDDSPRAGTSLVNMYAKCGLMRRAVLVFGGSE-RDVFGYNALISGFV 137

Query: 412 QHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGI 471
            +G   +A+  +R+M  +G+ PD  +F  +L   S + ++ + +++   +  K   +   
Sbjct: 138 VNGSPLDAMETYREMRANGILPDKYTFPSLLKG-SDAMELSDVKKV-HGLAFKLGFDSDC 195

Query: 472 EHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQ 531
              + +V    +   V DA ++ +++P   D+++W +L+       + + A +   K+ +
Sbjct: 196 YVGSGLVTSYSKFMSVEDAQKVFDELPDRDDSVLWNALVNGYSQIFRFEDALLVFSKMRE 255



 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 99/214 (46%), Gaps = 24/214 (11%)

Query: 86  NGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV- 144
           N ++  +VK G + +AR VFD+M V++  SW  M+ GY  +   E A  +F  M    V 
Sbjct: 406 NSLMDMYVKCGDLRDARMVFDSMRVKDSASWNIMINGYGVQSCGELALDMFSCMCRAGVK 465

Query: 145 ---VSWTVML-----GGLLKDSR--VEDARKLFDMMPVKDVVA-VTNMIGGYCEEGRLEE 193
              +++  +L      G L + R  +     +++++P  D  A V +M+G      +LEE
Sbjct: 466 PDEITFVGLLQACSHSGFLNEGRNFLAQMETVYNILPTSDHYACVIDMLG---RADKLEE 522

Query: 194 ARALFDEMPK-RNVVTWTTMVSGYARNRRVDVA----RKLFEVMPERNEVSWTAMLMGYT 248
           A  L    P   N V W +++S    +   D+A    ++L E+ PE     +  M   Y 
Sbjct: 523 AYELAISKPICDNPVVWRSILSSCRLHGNKDLALVAGKRLHELEPEHCG-GYVLMSNVYV 581

Query: 249 HSGRMREASEFFDAM---PVKPVVACNEMIMGFG 279
            +G+  E  +  DAM    VK    C+ +++  G
Sbjct: 582 EAGKYEEVLDVRDAMRQQNVKKTPGCSWIVLKNG 615


>AT4G19191.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:10496228-10498192 FORWARD
           LENGTH=654
          Length = 654

 Score =  278 bits (711), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 173/544 (31%), Positives = 275/544 (50%), Gaps = 20/544 (3%)

Query: 89  VSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWT 148
           V  FVK   V  A +VF+ MP R+  +W +M+ G+ Q G+ ++A  LF  M    +   +
Sbjct: 94  VDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMRLNEITPDS 153

Query: 149 VMLGGLLKDSRVEDARKLFDMMPVKDV-------VAVTNM-IGGYCEEGRLEEARALFDE 200
           V +  L++ +  E + KL + M    +       V V N  I  Y + G L+ A+ +F+ 
Sbjct: 154 VTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEA 213

Query: 201 MPK--RNVVTWTTMVSGYARNRRVDVARKLFEVMPE---RNEVSWTAMLMGYTHSGRMRE 255
           + +  R VV+W +M   Y+       A  L+ +M     + ++S    L     +     
Sbjct: 214 IDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLT 273

Query: 256 ASEFFDAMPV-----KPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYE 310
                 +  +     + + A N  I  +    D   A+ +F+ M  R   +W+ MI  Y 
Sbjct: 274 QGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYA 333

Query: 311 RKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQD-L 369
            KG   EAL LF  M + G   +                 + G+ + AR       +D +
Sbjct: 334 EKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRDNV 393

Query: 370 YVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLS 429
            + +ALI MY KCG +  A+ IF+  P K VV W +MI GY+ +G+  EAL +F  M   
Sbjct: 394 MICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDL 453

Query: 430 GVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVND 489
              P+ I+F+ VL AC++SG +++G E F  MK  Y + PG++HY+CMVDLLGR G++ +
Sbjct: 454 DYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLEE 513

Query: 490 AVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYAS 549
           A+E++  M  +PDA +WG+LL AC+ H  + +AE A E L  LEP+ A PYV ++++YA+
Sbjct: 514 ALELIRNMSAKPDAGIWGALLNACKIHRNVKIAEQAAESLFNLEPQMAAPYVEMANIYAA 573

Query: 550 KGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDG 609
            G W+    +R  +K R++ K PG S I+V  K H F  G++  H E  +I   L  L  
Sbjct: 574 AGMWDGFARIRSIMKQRNIKKYPGESVIQVNGKNHSFTVGEHG-HVENEVIYFTLNGLSL 632

Query: 610 LLRD 613
             +D
Sbjct: 633 FAKD 636



 Score =  137 bits (345), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/429 (24%), Positives = 182/429 (42%), Gaps = 21/429 (4%)

Query: 102 RRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMP----EKNVVSWTVMLGGLLKD 157
           RR++    + +V +W   +R  V   +  E+  LF  M     E N  ++  +     + 
Sbjct: 6   RRLYRISGLSSVNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARL 65

Query: 158 SRV---EDARKLFDMMPV-KDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMV 213
           + V   E         P   DV   T  +  + +   ++ A  +F+ MP+R+  TW  M+
Sbjct: 66  ADVGCCEMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAML 125

Query: 214 SGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVK------- 266
           SG+ ++   D A  LF  M        +  +M    S    ++ +  +AM          
Sbjct: 126 SGFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVD 185

Query: 267 -PVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGT---WSAMIKVYERKGFELEALGLF 322
             V   N  I  +G  GD+D AK VFE + +R D T   W++M K Y   G   +A GL+
Sbjct: 186 VQVTVANTWISTYGKCGDLDSAKLVFEAI-DRGDRTVVSWNSMFKAYSVFGEAFDAFGLY 244

Query: 323 ARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKC 382
             M RE    +                   GR +H+  +    DQD+   +  I+MY K 
Sbjct: 245 CLMLREEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKS 304

Query: 383 GDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVL 442
            D   A+ +F+    +  V W  MI+GY++ G  +EAL +F  M  SG  PD ++ + ++
Sbjct: 305 EDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLI 364

Query: 443 SACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPD 502
           S C   G ++ G+ I             +     ++D+  + G +++A +I +  P E  
Sbjct: 365 SGCGKFGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTP-EKT 423

Query: 503 AIVWGSLLG 511
            + W +++ 
Sbjct: 424 VVTWTTMIA 432



 Score =  119 bits (299), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 153/343 (44%), Gaps = 62/343 (18%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLF------ETTP 78
           IS Y + G +++A+ VF+      RT  SWN+M  AY    +   A  L+      E  P
Sbjct: 195 ISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKP 254

Query: 79  E---------------------------------KNIVSWNGMVSGFVKNGMVAEARRVF 105
           +                                 ++I + N  +S + K+     AR +F
Sbjct: 255 DLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLF 314

Query: 106 DAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM----PEKNVVSWTVMLGGLLKDSRVE 161
           D M  R  VSWT M+ GY ++G+++EA  LF  M     + ++V+   ++ G  K   +E
Sbjct: 315 DIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLE 374

Query: 162 -----DARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGY 216
                DAR         +V+    +I  Y + G + EAR +FD  P++ VVTWTTM++GY
Sbjct: 375 TGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGY 434

Query: 217 ARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAMP----VKPV 268
           A N     A KLF  M +     N +++ A+L    HSG + +  E+F  M     + P 
Sbjct: 435 ALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPG 494

Query: 269 V---ACNEMIMGFGFDGDVDRAKAVFEKMRERDD-GTWSAMIK 307
           +   +C  M+   G  G ++ A  +   M  + D G W A++ 
Sbjct: 495 LDHYSC--MVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLN 535



 Score =  110 bits (276), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 123/531 (23%), Positives = 206/531 (38%), Gaps = 113/531 (21%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLF------E 75
           T  +  + +   ++ A KVF+  P   R  ++WNAM++ + Q+    +A +LF      E
Sbjct: 91  TATVDMFVKCNSVDYAAKVFERMPE--RDATTWNAMLSGFCQSGHTDKAFSLFREMRLNE 148

Query: 76  TTPEK---------------------------------NIVSWNGMVSGFVKNGMVAEAR 102
            TP+                                   +   N  +S + K G +  A+
Sbjct: 149 ITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAK 208

Query: 103 RVFDAMPV--RNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV---VSWTVMLGGLLKD 157
            VF+A+    R VVSW SM + Y   G   +A  L+  M  +     +S  + L    ++
Sbjct: 209 LVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQN 268

Query: 158 SRVEDARKLFDMMPV-----KDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTM 212
                  +L     +     +D+ A+   I  Y +      AR LFD M  R  V+WT M
Sbjct: 269 PETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVM 328

Query: 213 VSGYARNRRVDVARKLFEVMPERNE----VSWTAMLMGYTHSGRMREASEFFDA------ 262
           +SGYA    +D A  LF  M +  E    V+  +++ G    G + E  ++ DA      
Sbjct: 329 ISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSL-ETGKWIDARADIYG 387

Query: 263 MPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLF 322
                V+ CN +I  +   G +  A+ +F+   E+   TW+ MI  Y   G  LEAL LF
Sbjct: 388 CKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLF 447

Query: 323 ARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKC 382
           ++M                                   +  ++  +     A++      
Sbjct: 448 SKM-----------------------------------IDLDYKPNHITFLAVLQACAHS 472

Query: 383 GDLVRA-------KWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDD 435
           G L +        K ++N  P  D   ++ M+    + G  EEAL + R+M      PD 
Sbjct: 473 GSLEKGWEYFHIMKQVYNISPGLD--HYSCMVDLLGRKGKLEEALELIRNM---SAKPDA 527

Query: 436 ISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEH-YACMVDLLGRAG 485
             +  +L+AC     VK   +  ES+   + +EP +   Y  M ++   AG
Sbjct: 528 GIWGALLNACKIHRNVKIAEQAAESL---FNLEPQMAAPYVEMANIYAAAG 575



 Score = 88.2 bits (217), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 101/212 (47%), Gaps = 2/212 (0%)

Query: 302 WSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLV 361
           W+  I+    +   +E+L LF  M+R G   N                      VHA L+
Sbjct: 20  WNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHAHLI 79

Query: 362 RSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALN 421
           +S F  D++V +A + M+VKC  +  A  +F R P +D   WN+M++G+ Q G  ++A +
Sbjct: 80  KSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFS 139

Query: 422 VFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLL 481
           +FR+M L+ + PD ++ + ++ + S+   +K   E   ++  +  V+  +      +   
Sbjct: 140 LFREMRLNEITPDSVTVMTLIQSASFEKSLKL-LEAMHAVGIRLGVDVQVTVANTWISTY 198

Query: 482 GRAGQVNDAVEIVEKMPMEPDAIV-WGSLLGA 512
           G+ G ++ A  + E +      +V W S+  A
Sbjct: 199 GKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKA 230



 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 93/196 (47%), Gaps = 15/196 (7%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMP----V 110
           NA++  Y +    H+A  +F+ TPEK +V+W  M++G+  NG+  EA ++F  M      
Sbjct: 397 NALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYK 456

Query: 111 RNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVS-----WTVMLGGLLKDSRVEDARK 165
            N +++ ++++     G++E+    F  M +   +S     ++ M+  L +  ++E+A +
Sbjct: 457 PNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLEEALE 516

Query: 166 LFDMMPVKDVVAVTNMIGGYCEEGR-----LEEARALFDEMPKRNVVTWTTMVSGYARNR 220
           L   M  K    +   +   C+  R      + A +LF+  P+     +  M + YA   
Sbjct: 517 LIRNMSAKPDAGIWGALLNACKIHRNVKIAEQAAESLFNLEPQM-AAPYVEMANIYAAAG 575

Query: 221 RVDVARKLFEVMPERN 236
             D   ++  +M +RN
Sbjct: 576 MWDGFARIRSIMKQRN 591


>AT4G22760.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:11960553-11962289 FORWARD
           LENGTH=578
          Length = 578

 Score =  278 bits (710), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 148/421 (35%), Positives = 239/421 (56%), Gaps = 3/421 (0%)

Query: 160 VEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARN 219
           +E A+K FD +  K+ V+  +++ GY E G L+EAR +FD++P+++ V+W  ++S YA+ 
Sbjct: 155 IELAKKAFDDIAEKNTVSWNSLLHGYLESGELDEARRVFDKIPEKDAVSWNLIISSYAKK 214

Query: 220 RRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFG 279
             +  A  LF  MP ++  SW  ++ GY +   M+ A  +FDAMP K  V+   MI G+ 
Sbjct: 215 GDMGNACSLFSAMPLKSPASWNILIGGYVNCREMKLARTYFDAMPQKNGVSWITMISGYT 274

Query: 280 FDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXX 339
             GDV  A+ +F  M ++D   + AMI  Y + G   +AL LFA+M    + +       
Sbjct: 275 KLGDVQSAEELFRLMSKKDKLVYDAMIACYTQNGKPKDALKLFAQMLERNSYIQPDEITL 334

Query: 340 XXXXXXXXXXXD--HGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPL 397
                      +   G  V + +       D  ++++LI +Y+K GD  +A  +F+    
Sbjct: 335 SSVVSANSQLGNTSFGTWVESYITEHGIKIDDLLSTSLIDLYMKGGDFAKAFKMFSNLNK 394

Query: 398 KDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREI 457
           KD V +++MI G   +G+  EA ++F  M    +PP+ ++F G+LSA S+SG V+EG + 
Sbjct: 395 KDTVSYSAMIMGCGINGMATEANSLFTAMIEKKIPPNVVTFTGLLSAYSHSGLVQEGYKC 454

Query: 458 FESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHM 517
           F SMK  + +EP  +HY  MVD+LGRAG++ +A E+++ MPM+P+A VWG+LL A   H 
Sbjct: 455 FNSMK-DHNLEPSADHYGIMVDMLGRAGRLEEAYELIKSMPMQPNAGVWGALLLASGLHN 513

Query: 518 KLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWI 577
            ++  E+A     +LE    G    L+ +Y+S GRW+D   VR+ IK + + K  G SW+
Sbjct: 514 NVEFGEIACSHCVKLETDPTGYLSHLAMIYSSVGRWDDARTVRDSIKEKKLCKTLGCSWV 573

Query: 578 E 578
           E
Sbjct: 574 E 574



 Score =  158 bits (400), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 94/319 (29%), Positives = 163/319 (51%), Gaps = 16/319 (5%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKN 81
           TG +  Y+R+G IE A+K FD+     + T SWN+++  Y ++ +  +A  +F+  PEK+
Sbjct: 143 TGLVGLYSRLGYIELAKKAFDDIAE--KNTVSWNSLLHGYLESGELDEARRVFDKIPEKD 200

Query: 82  IVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPE 141
            VSWN ++S + K G +  A  +F AMP+++  SW  ++ GYV    ++ A   F  MP+
Sbjct: 201 AVSWNLIISSYAKKGDMGNACSLFSAMPLKSPASWNILIGGYVNCREMKLARTYFDAMPQ 260

Query: 142 KNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEM 201
           KN VSW  M+ G  K   V+ A +LF +M  KD +    MI  Y + G+ ++A  LF +M
Sbjct: 261 KNGVSWITMISGYTKLGDVQSAEELFRLMSKKDKLVYDAMIACYTQNGKPKDALKLFAQM 320

Query: 202 PKRNV------VTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSG 251
            +RN       +T +++VS  ++         +   + E     +++  T+++  Y   G
Sbjct: 321 LERNSYIQPDEITLSSVVSANSQLGNTSFGTWVESYITEHGIKIDDLLSTSLIDLYMKGG 380

Query: 252 RMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRER----DDGTWSAMIK 307
              +A + F  +  K  V+ + MIMG G +G    A ++F  M E+    +  T++ ++ 
Sbjct: 381 DFAKAFKMFSNLNKKDTVSYSAMIMGCGINGMATEANSLFTAMIEKKIPPNVVTFTGLLS 440

Query: 308 VYERKGFELEALGLFARMQ 326
            Y   G   E    F  M+
Sbjct: 441 AYSHSGLVQEGYKCFNSMK 459


>AT2G36980.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:15531161-15533038 FORWARD
           LENGTH=625
          Length = 625

 Score =  277 bits (708), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 185/620 (29%), Positives = 303/620 (48%), Gaps = 36/620 (5%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFE----TT 77
           T  I+  A+ G+I +AR+VFD  P +   T +WN M+ +Y +     +A+ LF     + 
Sbjct: 8   TSKIASLAKSGRIASARQVFDGMPELD--TVAWNTMLTSYSRLGLHQEAIALFTQLRFSD 65

Query: 78  PEKNIVSWNGMVSGFVKNGMVAEARRVFD---------AMPVRNVVSWTSMVRGYVQEGN 128
            + +  S+  ++S     G V   R++           ++PV N     S++  Y +  +
Sbjct: 66  AKPDDYSFTAILSTCASLGNVKFGRKIQSLVIRSGFCASLPVNN-----SLIDMYGKCSD 120

Query: 129 VEEAERLFWRM--PEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYC 186
              A ++F  M    +N V+W  +L   +   + E A  +F  MP +   A   MI G+ 
Sbjct: 121 TLSANKVFRDMCCDSRNEVTWCSLLFAYMNAEQFEAALDVFVEMPKRVAFAWNIMISGHA 180

Query: 187 EEGRLEEARALFDEMP----KRNVVTWTTMVSG-YARNRRVDVARKLFEVMPERNEVSW- 240
             G+LE   +LF EM     K +  T++++++   A +  V   R +  VM +    S  
Sbjct: 181 HCGKLESCLSLFKEMLESEFKPDCYTFSSLMNACSADSSNVVYGRMVHAVMLKNGWSSAV 240

Query: 241 ---TAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRER 297
               ++L  YT  G   +A    +++ V   V+ N +I      G+ ++A  VF    E+
Sbjct: 241 EAKNSVLSFYTKLGSRDDAMRELESIEVLTQVSWNSIIDACMKIGETEKALEVFHLAPEK 300

Query: 298 DDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVH 357
           +  TW+ MI  Y R G   +AL  F  M + G   +                  HG+ +H
Sbjct: 301 NIVTWTTMITGYGRNGDGEQALRFFVEMMKSGVDSDHFAYGAVLHACSGLALLGHGKMIH 360

Query: 358 ARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGE 417
             L+   F    YV +AL+ +Y KCGD+  A   F     KD+V WN+M+  +  HGL +
Sbjct: 361 GCLIHCGFQGYAYVGNALVNLYAKCGDIKEADRAFGDIANKDLVSWNTMLFAFGVHGLAD 420

Query: 418 EALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACM 477
           +AL ++ +M  SG+ PD+++FIG+L+ CS+SG V+EG  IFESM   Y++   ++H  CM
Sbjct: 421 QALKLYDNMIASGIKPDNVTFIGLLTTCSHSGLVEEGCMIFESMVKDYRIPLEVDHVTCM 480

Query: 478 VDLLGRAGQVNDAVEIVEKMPM----EPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLE 533
           +D+ GR G + +A ++            +   W +LLGAC TH   +L     + L   E
Sbjct: 481 IDMFGRGGHLAEAKDLATTYSSLVTDSSNNSSWETLLGACSTHWHTELGREVSKVLKIAE 540

Query: 534 PKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNC 593
           P     +VLLS++Y S GRW++ E VR ++  R + K PG SWIEV  +   FV GD++ 
Sbjct: 541 PSEEMSFVLLSNLYCSTGRWKEGEDVRREMVERGMKKTPGCSWIEVGNQVSTFVVGDSS- 599

Query: 594 HPEQPIIMKMLERLDGLLRD 613
           HP    + + L  L   +R+
Sbjct: 600 HPRLEELSETLNCLQHEMRN 619


>AT3G25970.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:9500116-9502221 REVERSE
           LENGTH=701
          Length = 701

 Score =  276 bits (707), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 184/666 (27%), Positives = 321/666 (48%), Gaps = 81/666 (12%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVS 84
           +  Y + G +  A  +FDE P   R + SWN M++ Y    +   A  LF T  +++   
Sbjct: 42  LDSYIKFGFLGYANMLFDEMPK--RDSVSWNTMISGYTSCGKLEDAWCLF-TCMKRSGSD 98

Query: 85  WNGMVSGFVKNGMVAEARRVFD------AMPVR-----NVVSWTSMVRGYVQEGNVEEAE 133
            +G     +  G+ +  R  FD       + ++     NV   +S+V  Y +   VE+A 
Sbjct: 99  VDGYSFSRLLKGIASVKR--FDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCERVEDAF 156

Query: 134 RLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVK-------------------- 173
             F  + E N VSW  ++ G ++   ++ A  L  +M +K                    
Sbjct: 157 EAFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMDAGTFAPLLTLLDDP 216

Query: 174 --------------------DVVAVTNMIGGYCEEGRLEEARALFDEMP-KRNVVTWTTM 212
                               ++     MI  Y + G + +A+ +FD +   +++++W +M
Sbjct: 217 MFCNLLKQVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFDGLGGSKDLISWNSM 276

Query: 213 VSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREAS--------EFFDAMP 264
           ++G++++   + A +LF  M       W    + YT++G +   S        +    M 
Sbjct: 277 IAGFSKHELKESAFELFIQMQRH----WVETDI-YTYTGLLSACSGEEHQIFGKSLHGMV 331

Query: 265 VKP-----VVACNEMI-MGFGF-DGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELE 317
           +K        A N +I M   F  G ++ A ++FE ++ +D  +W+++I  + +KG   +
Sbjct: 332 IKKGLEQVTSATNALISMYIQFPTGTMEDALSLFESLKSKDLISWNSIITGFAQKGLSED 391

Query: 318 ALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALIT 377
           A+  F+ ++     ++                   G+Q+HA   +S F  + +V S+LI 
Sbjct: 392 AVKFFSYLRSSEIKVDDYAFSALLRSCSDLATLQLGQQIHALATKSGFVSNEFVISSLIV 451

Query: 378 MYVKCGDLVRAKWIFNRYPLK-DVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDI 436
           MY KCG +  A+  F +   K   V WN+MI GY+QHGLG+ +L++F  MC   V  D +
Sbjct: 452 MYSKCGIIESARKCFQQISSKHSTVAWNAMILGYAQHGLGQVSLDLFSQMCNQNVKLDHV 511

Query: 437 SFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEK 496
           +F  +L+ACS++G ++EG E+   M+  Y+++P +EHYA  VDLLGRAG VN A E++E 
Sbjct: 512 TFTAILTACSHTGLIQEGLELLNLMEPVYKIQPRMEHYAAAVDLLGRAGLVNKAKELIES 571

Query: 497 MPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDV 556
           MP+ PD +V  + LG CR   ++++A      L ++EP++   YV LSHMY+   +WE+ 
Sbjct: 572 MPLNPDPMVLKTFLGVCRACGEIEMATQVANHLLEIEPEDHFTYVSLSHMYSDLKKWEEK 631

Query: 557 EVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNN---CHPEQPIIMKMLERLDGLLRD 613
             V++ +K R V K+PG+SWIE+  +   F   D +   C     +I  + + +  L  D
Sbjct: 632 ASVKKMMKERGVKKVPGWSWIEIRNQVKAFNAEDRSNPLCQDIYMMIKDLTQEMQWLDSD 691

Query: 614 AGYSPD 619
            G   D
Sbjct: 692 NGVDAD 697



 Score =  146 bits (369), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 108/479 (22%), Positives = 221/479 (46%), Gaps = 40/479 (8%)

Query: 86  NGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM----PE 141
           N ++  ++K G +  A  +FD MP R+ VSW +M+ GY   G +E+A  LF  M     +
Sbjct: 39  NRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGKLEDAWCLFTCMKRSGSD 98

Query: 142 KNVVSWTVMLGGLLKDSRVEDARKLFDMMPVK-----DVVAVTNMIGGYCEEGRLEEARA 196
            +  S++ +L G+    R +   ++  ++ +K     +V   ++++  Y +  R+E+A  
Sbjct: 99  VDGYSFSRLLKGIASVKRFDLGEQVHGLV-IKGGYECNVYVGSSLVDMYAKCERVEDAFE 157

Query: 197 LFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTA-------------- 242
            F E+ + N V+W  +++G+ + R +  A  L  +M  +  V+  A              
Sbjct: 158 AFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMDAGTFAPLLTLLDDPM 217

Query: 243 --MLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKM-RERDD 299
              L+   H+  ++   +         +  CN MI  +   G V  AK VF+ +   +D 
Sbjct: 218 FCNLLKQVHAKVLKLGLQ-------HEITICNAMISSYADCGSVSDAKRVFDGLGGSKDL 270

Query: 300 GTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHAR 359
            +W++MI  + +   +  A  LF +MQR     +                   G+ +H  
Sbjct: 271 ISWNSMIAGFSKHELKESAFELFIQMQRHWVETDIYTYTGLLSACSGEEHQIFGKSLHGM 330

Query: 360 LVRSEFDQDLYVASALITMYVK--CGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGE 417
           +++   +Q     +ALI+MY++   G +  A  +F     KD++ WNS+ITG++Q GL E
Sbjct: 331 VIKKGLEQVTSATNALISMYIQFPTGTMEDALSLFESLKSKDLISWNSIITGFAQKGLSE 390

Query: 418 EALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACM 477
           +A+  F  +  S +  DD +F  +L +CS    ++ G++I  ++  K          + +
Sbjct: 391 DAVKFFSYLRSSEIKVDDYAFSALLRSCSDLATLQLGQQI-HALATKSGFVSNEFVISSL 449

Query: 478 VDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKN 536
           + +  + G +  A +  +++  +   + W +++     H    L +V+++  +Q+  +N
Sbjct: 450 IVMYSKCGIIESARKCFQQISSKHSTVAWNAMILGYAQH---GLGQVSLDLFSQMCNQN 505



 Score =  116 bits (290), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 162/357 (45%), Gaps = 24/357 (6%)

Query: 171 PVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFE 230
            + D+     ++  Y + G L  A  LFDEMPKR+ V+W TM+SGY    +++ A  LF 
Sbjct: 31  SISDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGKLEDAWCLFT 90

Query: 231 VM----PERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACN-----EMIMGFGFD 281
            M     + +  S++ +L G     R  +  E    + +K    CN      ++  +   
Sbjct: 91  CMKRSGSDVDGYSFSRLLKGIASVKRF-DLGEQVHGLVIKGGYECNVYVGSSLVDMYAKC 149

Query: 282 GDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGA-ALNFPXXXXX 340
             V+ A   F+++ E +  +W+A+I  + +      A  L   M+ + A  ++       
Sbjct: 150 ERVEDAFEAFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMDAGTFAPL 209

Query: 341 XXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRY-PLKD 399
                     +  +QVHA++++     ++ + +A+I+ Y  CG +  AK +F+     KD
Sbjct: 210 LTLLDDPMFCNLLKQVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFDGLGGSKD 269

Query: 400 VVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFE 459
           ++ WNSMI G+S+H L E A  +F  M    V  D  ++ G+LSACS      E  +IF 
Sbjct: 270 LISWNSMIAGFSKHELKESAFELFIQMQRHWVETDIYTYTGLLSACS-----GEEHQIFG 324

Query: 460 SMKCKYQVEPGIEHYACMVDLLGR------AGQVNDAVEIVEKMPMEPDAIVWGSLL 510
                  ++ G+E      + L         G + DA+ + E +    D I W S++
Sbjct: 325 KSLHGMVIKKGLEQVTSATNALISMYIQFPTGTMEDALSLFESLK-SKDLISWNSII 380



 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 79/157 (50%), Gaps = 2/157 (1%)

Query: 356 VHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGL 415
            H   ++     D+YV++ ++  Y+K G L  A  +F+  P +D V WN+MI+GY+  G 
Sbjct: 22  THCYAIKCGSISDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGK 81

Query: 416 GEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYA 475
            E+A  +F  M  SG   D  SF  +L   +   +   G ++   +  K   E  +   +
Sbjct: 82  LEDAWCLFTCMKRSGSDVDGYSFSRLLKGIASVKRFDLGEQV-HGLVIKGGYECNVYVGS 140

Query: 476 CMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGA 512
            +VD+  +  +V DA E  +++  EP+++ W +L+  
Sbjct: 141 SLVDMYAKCERVEDAFEAFKEIS-EPNSVSWNALIAG 176


>AT2G44880.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr2:18505239-18506906 FORWARD
           LENGTH=555
          Length = 555

 Score =  276 bits (706), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 168/522 (32%), Positives = 274/522 (52%), Gaps = 15/522 (2%)

Query: 98  VAEARRVFDAMPVRNVVSWT-SMVRGYVQEGNVEEAERLFWRMPEKNVV-----SWTVML 151
           +  AR++FD  P R+    + SM++ Y++     ++  L+  + ++        ++T + 
Sbjct: 26  IGYARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDSFALYRDLRKETCFAPDNFTFTTLT 85

Query: 152 GGLLKDSRVEDARKLFDMM----PVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVV 207
                   V    +L   +       D+   T ++  Y + G++  AR  FDEMP R+ V
Sbjct: 86  KSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEV 145

Query: 208 TWTTMVSGYARNRRVDVARKLFEVMPE-RNEVSWTAMLMGYTHSGRMREASEFFDAMPVK 266
           +WT ++SGY R   +D+A KLF+ MP  ++ V + AM+ G+  SG M  A   FD M  K
Sbjct: 146 SWTALISGYIRCGELDLASKLFDQMPHVKDVVIYNAMMDGFVKSGDMTSARRLFDEMTHK 205

Query: 267 PVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQ 326
            V+    MI G+    D+D A+ +F+ M ER+  +W+ MI  Y +     E + LF  MQ
Sbjct: 206 TVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEGIRLFQEMQ 265

Query: 327 REGAA-LNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDL 385
              +   +                   G   H  + R + D+ + V +A++ MY KCG++
Sbjct: 266 ATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDMYSKCGEI 325

Query: 386 VRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSAC 445
            +AK IF+  P K V  WN+MI GY+ +G    AL++F  M +    PD+I+ + V++AC
Sbjct: 326 EKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIEE-KPDEITMLAVITAC 384

Query: 446 SYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIV 505
           ++ G V+EGR+ F  M+ +  +   IEHY CMVDLLGRAG + +A +++  MP EP+ I+
Sbjct: 385 NHGGLVEEGRKWFHVMR-EMGLNAKIEHYGCMVDLLGRAGSLKEAEDLITNMPFEPNGII 443

Query: 506 WGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKT 565
             S L AC  +  ++ AE  ++K  +LEP+N G YVLL ++YA+  RW+D  +V+  ++ 
Sbjct: 444 LSSFLSACGQYKDIERAERILKKAVELEPQNDGNYVLLRNLYAADKRWDDFGMVKNVMRK 503

Query: 566 RSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERL 607
               K  G S IE+      F+ GD   HP +  I  +L  L
Sbjct: 504 NQAKKEVGCSLIEINYIVSEFISGDTT-HPHRRSIHLVLGDL 544



 Score =  162 bits (411), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 145/287 (50%), Gaps = 46/287 (16%)

Query: 21  STGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPE- 79
           STG +  YA+ G++  AR  FDE PH  R+  SW A+++ Y +  +   A  LF+  P  
Sbjct: 116 STGVVDMYAKFGKMGCARNAFDEMPH--RSEVSWTALISGYIRCGELDLASKLFDQMPHV 173

Query: 80  KNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM 139
           K++V +N M+ GFVK+G +  ARR+FD M  + V++WT+M+ GY    +++ A +LF  M
Sbjct: 174 KDVVIYNAMMDGFVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAM 233

Query: 140 PEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPV--------------------------- 172
           PE+N+VSW  M+GG  ++ + ++  +LF  M                             
Sbjct: 234 PERNLVSWNTMIGGYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLG 293

Query: 173 -------------KDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARN 219
                        K V   T ++  Y + G +E+A+ +FDEMP++ V +W  M+ GYA N
Sbjct: 294 EWCHCFVQRKKLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALN 353

Query: 220 RRVDVARKLFEVM---PERNEVSWTAMLMGYTHSGRMREASEFFDAM 263
                A  LF  M    + +E++  A++    H G + E  ++F  M
Sbjct: 354 GNARAALDLFVTMMIEEKPDEITMLAVITACNHGGLVEEGRKWFHVM 400



 Score = 79.7 bits (195), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 108/262 (41%), Gaps = 56/262 (21%)

Query: 20  TSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFE---- 75
           T T  I  Y  I  I+ ARK+FD  P   R   SWN M+  Y Q  QP + + LF+    
Sbjct: 209 TWTTMIHGYCNIKDIDAARKLFDAMP--ERNLVSWNTMIGGYCQNKQPQEGIRLFQEMQA 266

Query: 76  TTP------------------------------------EKNIVSWNGMVSGFVKNGMVA 99
           TT                                     +K +     ++  + K G + 
Sbjct: 267 TTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDMYSKCGEIE 326

Query: 100 EARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM---PEKNVVSWTVMLGGLLK 156
           +A+R+FD MP + V SW +M+ GY   GN   A  LF  M    + + ++   ++     
Sbjct: 327 KAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIEEKPDEITMLAVITACNH 386

Query: 157 DSRVEDARKLFDMM-------PVKDVVAVTNMIGGYCEEGRLEEARALFDEMP-KRNVVT 208
              VE+ RK F +M        ++    + +++G     G L+EA  L   MP + N + 
Sbjct: 387 GGLVEEGRKWFHVMREMGLNAKIEHYGCMVDLLG---RAGSLKEAEDLITNMPFEPNGII 443

Query: 209 WTTMVSGYARNRRVDVARKLFE 230
            ++ +S   + + ++ A ++ +
Sbjct: 444 LSSFLSACGQYKDIERAERILK 465


>AT3G47840.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:17651912-17654032 FORWARD
           LENGTH=706
          Length = 706

 Score =  276 bits (705), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 181/636 (28%), Positives = 302/636 (47%), Gaps = 70/636 (11%)

Query: 32  GQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFET--------TPEKNIV 83
           G +  AR+VFD+ PH      SW +++  Y  A+   +A+ LF          +P+ +++
Sbjct: 54  GNLRAARQVFDKMPH--GDIVSWTSIIKRYVTANNSDEALILFSAMRVVDHAVSPDTSVL 111

Query: 84  S---------------------------------WNGMVSGFVKNGMVAEARRVFDAMPV 110
           S                                  + ++  + + G + ++ RVF  MP 
Sbjct: 112 SVVLKACGQSSNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKIDKSCRVFSEMPF 171

Query: 111 RNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDS----RVEDARKL 166
           RN V+WT+++ G V  G  +E    F  M     +S T      LK      +V+  + +
Sbjct: 172 RNAVTWTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGLRQVKYGKAI 231

Query: 167 FDMMPVKDVVA---VTNMIGG-YCEEGRLEEARALFDEMPKRNVVTWTTMVSGYAR---- 218
              + V+  V    V N +   Y E G +++   LF+ M +R+VV+WT+++  Y R    
Sbjct: 232 HTHVIVRGFVTTLCVANSLATMYTECGEMQDGLCLFENMSERDVVSWTSLIVAYKRIGQE 291

Query: 219 NRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFF---------DAMPVKPVV 269
            + V+   K+       NE ++ +M        R+    +           D++ V    
Sbjct: 292 VKAVETFIKMRNSQVPPNEQTFASMFSACASLSRLVWGEQLHCNVLSLGLNDSLSVS--- 348

Query: 270 ACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREG 329
             N M+  +   G++  A  +F+ MR RD  +WS +I  Y + GF  E    F+ M++ G
Sbjct: 349 --NSMMKMYSTCGNLVSASVLFQGMRCRDIISWSTIIGGYCQAGFGEEGFKYFSWMRQSG 406

Query: 330 AALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAK 389
                                + GRQVHA  +    +Q+  V S+LI MY KCG +  A 
Sbjct: 407 TKPTDFALASLLSVSGNMAVIEGGRQVHALALCFGLEQNSTVRSSLINMYSKCGSIKEAS 466

Query: 390 WIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSG 449
            IF      D+V   +MI GY++HG  +EA+++F      G  PD ++FI VL+AC++SG
Sbjct: 467 MIFGETDRDDIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFRPDSVTFISVLTACTHSG 526

Query: 450 KVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSL 509
           ++  G   F  M+  Y + P  EHY CMVDLL RAG+++DA +++ +M  + D +VW +L
Sbjct: 527 QLDLGFHYFNMMQETYNMRPAKEHYGCMVDLLCRAGRLSDAEKMINEMSWKKDDVVWTTL 586

Query: 510 LGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVI 569
           L AC+    ++    A E++ +L+P  A   V L+++Y+S G  E+   VR+ +K + VI
Sbjct: 587 LIACKAKGDIERGRRAAERILELDPTCATALVTLANIYSSTGNLEEAANVRKNMKAKGVI 646

Query: 570 KLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLE 605
           K PG+S I+++     FV GD   HP+   I  +LE
Sbjct: 647 KEPGWSSIKIKDCVSAFVSGD-RFHPQSEDIYNILE 681



 Score =  160 bits (404), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 123/517 (23%), Positives = 223/517 (43%), Gaps = 69/517 (13%)

Query: 70  AVTLFETTPEKNIVSW----------NGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSM 119
           +++L +   E+NIV            N  +   +  G +  AR+VFD MP  ++VSWTS+
Sbjct: 18  SISLLQKPVEENIVRISNQVMVKFDPNSHLRSLINAGNLRAARQVFDKMPHGDIVSWTSI 77

Query: 120 VRGYVQEGNVEEAERLFWRM--------PEKNVVSWTVMLGGLLKDSRVEDARKL----F 167
           ++ YV   N +EA  LF  M        P+ +V+S  V+L    + S +     L     
Sbjct: 78  IKRYVTANNSDEALILFSAMRVVDHAVSPDTSVLS--VVLKACGQSSNIAYGESLHAYAV 135

Query: 168 DMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARK 227
               +  V   ++++  Y   G+++++  +F EMP RN VTWT +++G     R      
Sbjct: 136 KTSLLSSVYVGSSLLDMYKRVGKIDKSCRVFSEMPFRNAVTWTAIITGLVHAGRYKEGLT 195

Query: 228 LFEVMPERNEVSWT-AMLMGYTHSGRMREASEFFDAMPVKPVV--------ACNEMIMGF 278
            F  M    E+S T    +       +R+  ++  A+    +V          N +   +
Sbjct: 196 YFSEMSRSEELSDTYTFAIALKACAGLRQV-KYGKAIHTHVIVRGFVTTLCVANSLATMY 254

Query: 279 GFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXX 338
              G++     +FE M ERD  +W+++I  Y+R G E++A+  F +M+      N     
Sbjct: 255 TECGEMQDGLCLFENMSERDVVSWTSLIVAYKRIGQEVKAVETFIKMRNSQVPPNEQTFA 314

Query: 339 XXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLK 398
                         G Q+H  ++    +  L V+++++ MY  CG+LV A  +F     +
Sbjct: 315 SMFSACASLSRLVWGEQLHCNVLSLGLNDSLSVSNSMMKMYSTCGNLVSASVLFQGMRCR 374

Query: 399 DVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIF 458
           D++ W+++I GY Q G GEE    F  M  SG  P D +   +LS       ++ GR++ 
Sbjct: 375 DIISWSTIIGGYCQAGFGEEGFKYFSWMRQSGTKPTDFALASLLSVSGNMAVIEGGRQVH 434

Query: 459 ESMKCKYQVEPGIEHYACMVDLLGRAGQV------------------------------- 487
               C + +E      + ++++  + G +                               
Sbjct: 435 ALALC-FGLEQNSTVRSSLINMYSKCGSIKEASMIFGETDRDDIVSLTAMINGYAEHGKS 493

Query: 488 NDAVEIVE---KMPMEPDAIVWGSLLGACRTHMKLDL 521
            +A+++ E   K+   PD++ + S+L AC    +LDL
Sbjct: 494 KEAIDLFEKSLKVGFRPDSVTFISVLTACTHSGQLDL 530


>AT1G05750.1 | Symbols: PDE247, CLB19 | Tetratricopeptide repeat
           (TPR)-like superfamily protein | chr1:1721523-1723025
           FORWARD LENGTH=500
          Length = 500

 Score =  274 bits (701), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 164/455 (36%), Positives = 249/455 (54%), Gaps = 17/455 (3%)

Query: 175 VVAVTNMIGGYCEEGRLEEARALFDEMP----KRNVVTWTTMVSGYARNRRVDVARKLFE 230
            V+ T+ I      GRL EA   F +M     + N +T+  ++SG         +  L +
Sbjct: 36  TVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGCGD--FTSGSEALGD 93

Query: 231 VMP--------ERNEV-SWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFD 281
           ++         +RN V   TA++  Y+  GR ++A   FD M  K  V  N MI G+   
Sbjct: 94  LLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRS 153

Query: 282 GDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXX 341
           G VD A  +F+KM ERD  +W+AMI  + +KG++ EAL  F  MQ  G   ++       
Sbjct: 154 GQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAAL 213

Query: 342 XXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVV 401
                      G  VH  ++  +F  ++ V+++LI +Y +CG +  A+ +F     + VV
Sbjct: 214 NACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVV 273

Query: 402 MWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESM 461
            WNS+I G++ +G   E+L  FR M   G  PD ++F G L+ACS+ G V+EG   F+ M
Sbjct: 274 SWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGLRYFQIM 333

Query: 462 KCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTH-MKLD 520
           KC Y++ P IEHY C+VDL  RAG++ DA+++V+ MPM+P+ +V GSLL AC  H   + 
Sbjct: 334 KCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAACSNHGNNIV 393

Query: 521 LAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVE 580
           LAE  ++ L  L  K+   YV+LS+MYA+ G+WE    +R K+K   + K PG+S IE++
Sbjct: 394 LAERLMKHLTDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIEID 453

Query: 581 KKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAG 615
              H+F+ GD N H E   I ++LE +   LR  G
Sbjct: 454 DCMHVFMAGD-NAHVETTYIREVLELISSDLRLQG 487



 Score =  105 bits (262), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 157/357 (43%), Gaps = 58/357 (16%)

Query: 113 VVSWTSMVRGYVQEGNVEEAERLFWRMP----EKNVVSWTVMLGGLLKDSRVEDARKLFD 168
            VSWTS +    + G + EA + F  M     E N +++  +L G    +   +A  L D
Sbjct: 36  TVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGCGDFTSGSEA--LGD 93

Query: 169 MM---------PVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARN 219
           ++             V+  T +IG Y + GR ++AR +FD M  +N VTW TM+ GY R+
Sbjct: 94  LLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRS 153

Query: 220 RRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMP---VKP--------V 268
            +VD A K+F+ MPER+ +SWTAM+ G+   G   EA  +F  M    VKP        +
Sbjct: 154 GQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAAL 213

Query: 269 VACNEM-IMGFGF---------------------------DGDVDRAKAVFEKMRERDDG 300
            AC  +  + FG                             G V+ A+ VF  M +R   
Sbjct: 214 NACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVV 273

Query: 301 TWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARL 360
           +W+++I  +   G   E+L  F +MQ +G   +                 + G + + ++
Sbjct: 274 SWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGLR-YFQI 332

Query: 361 VRSEFDQDLYVA--SALITMYVKCGDLVRAKWIFNRYPLK-DVVMWNSMITGYSQHG 414
           ++ ++     +     L+ +Y + G L  A  +    P+K + V+  S++   S HG
Sbjct: 333 MKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAACSNHG 389



 Score =  103 bits (257), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 111/220 (50%), Gaps = 12/220 (5%)

Query: 56  AMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVS 115
           A++  Y +  +  +A  +F+   +KN V+WN M+ G++++G V  A ++FD MP R+++S
Sbjct: 114 AIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLIS 173

Query: 116 WTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDA-------RKLFD 168
           WT+M+ G+V++G  EEA   F  M    V    V +   L       A        +   
Sbjct: 174 WTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVL 233

Query: 169 MMPVKDVVAVTN-MIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARK 227
               K+ V V+N +I  YC  G +E AR +F  M KR VV+W +++ G+A N     +  
Sbjct: 234 SQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLV 293

Query: 228 LFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAM 263
            F  M E+    + V++T  L   +H G + E   +F  M
Sbjct: 294 YFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGLRYFQIM 333



 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 98/188 (52%), Gaps = 8/188 (4%)

Query: 87  GMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVS 146
            ++  + K G   +AR VFD M  +N V+W +M+ GY++ G V+ A ++F +MPE++++S
Sbjct: 114 AIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLIS 173

Query: 147 WTVMLGGLLKDSRVEDARKLFDMMPVK----DVVAVTNMIGGYCEEGRLEEA----RALF 198
           WT M+ G +K    E+A   F  M +     D VA+   +      G L       R + 
Sbjct: 174 WTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVL 233

Query: 199 DEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASE 258
            +  K NV    +++  Y R   V+ AR++F  M +R  VSW ++++G+  +G   E+  
Sbjct: 234 SQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLV 293

Query: 259 FFDAMPVK 266
           +F  M  K
Sbjct: 294 YFRKMQEK 301



 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 130/273 (47%), Gaps = 23/273 (8%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKN 81
           T  I  Y++ G+ + AR VFD      + + +WN M+  Y ++ Q   A  +F+  PE++
Sbjct: 113 TAIIGMYSKRGRFKKARLVFDYMED--KNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERD 170

Query: 82  IVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVV-SWTSMVRGYVQEGNVEEAERLFW--- 137
           ++SW  M++GFVK G   EA   F  M +  V   + +++       N+       W   
Sbjct: 171 LISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHR 230

Query: 138 ----RMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEE 193
               +  + NV     ++    +   VE AR++F  M  + VV+  ++I G+   G   E
Sbjct: 231 YVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHE 290

Query: 194 ARALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVS-----WTAML 244
           +   F +M ++    + VT+T  ++  +    V+   + F++M     +S     +  ++
Sbjct: 291 SLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLV 350

Query: 245 MGYTHSGRMREASEFFDAMPVKPVVACNEMIMG 277
             Y+ +GR+ +A +   +MP+KP    NE+++G
Sbjct: 351 DLYSRAGRLEDALKLVQSMPMKP----NEVVIG 379


>AT3G22150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:7813028-7815490 FORWARD
           LENGTH=820
          Length = 820

 Score =  274 bits (700), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 179/559 (32%), Positives = 299/559 (53%), Gaps = 33/559 (5%)

Query: 80  KNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWR- 138
           K++   +  +S + + G +  +RRVFD+   RN+  W +M+  YVQ   + E+  LF   
Sbjct: 249 KDLFVVSSAISMYAELGDIESSRRVFDSCVERNIEVWNTMIGVYVQNDCLVESIELFLEA 308

Query: 139 MPEKNVVS----WTVMLGGLLKDSRVEDARKL-------FDMMPVKDVVAVTNMIGGYCE 187
           +  K +VS    + +    +    +VE  R+        F  +P+   V V +++  Y  
Sbjct: 309 IGSKEIVSDEVTYLLAASAVSALQQVELGRQFHGFVSKNFRELPI---VIVNSLMVMYSR 365

Query: 188 EGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAM 243
            G + ++  +F  M +R+VV+W TM+S + +N   D    L   M ++    + ++ TA+
Sbjct: 366 CGSVHKSFGVFLSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTAL 425

Query: 244 LMGYTHSGRMREASEFFDAMPVKPVVACNEM----IMGFGFDGDVDRAKAVFEK--MRER 297
           L   ++  R +E  +   A  ++  +    M    I  +   G +  ++ +FE     ER
Sbjct: 426 LSAASNL-RNKEIGKQTHAFLIRQGIQFEGMNSYLIDMYSKSGLIRISQKLFEGSGYAER 484

Query: 298 DDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVH 357
           D  TW++MI  Y + G   +   +F +M  +    N                 D G+Q+H
Sbjct: 485 DQATWNSMISGYTQNGHTEKTFLVFRKMLEQNIRPNAVTVASILPACSQIGSVDLGKQLH 544

Query: 358 ARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGE 417
              +R   DQ+++VASAL+ MY K G +  A+ +F++   ++ V + +MI GY QHG+GE
Sbjct: 545 GFSIRQYLDQNVFVASALVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMILGYGQHGMGE 604

Query: 418 EALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACM 477
            A+++F  M  SG+ PD I+F+ VLSACSYSG + EG +IFE M+  Y ++P  EHY C+
Sbjct: 605 RAISLFLSMQESGIKPDAITFVAVLSACSYSGLIDEGLKIFEEMREVYNIQPSSEHYCCI 664

Query: 478 VDLLGRAGQVNDAVEIVEKMPMEPD-AIVWGSLLGACRTHMKLDLAEVAVEKLAQLEP-K 535
            D+LGR G+VN+A E V+ +  E + A +WGSLLG+C+ H +L+LAE   E+LA+ +  K
Sbjct: 665 TDMLGRVGRVNEAYEFVKGLGEEGNIAELWGSLLGSCKLHGELELAETVSERLAKFDKGK 724

Query: 536 NAGPY-VLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCH 594
           N   Y VLLS+MYA + +W+ V+ VR  ++ + + K  G S IE+    + FV  D    
Sbjct: 725 NFSGYEVLLSNMYAEEQKWKSVDKVRRGMREKGLKKEVGRSGIEIAGYVNCFVSRDQ--- 781

Query: 595 PEQPIIMKMLERLDGLLRD 613
            E P   ++ + +DGL +D
Sbjct: 782 -EHPHSSEIYDVIDGLAKD 799



 Score =  167 bits (422), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 141/556 (25%), Positives = 249/556 (44%), Gaps = 76/556 (13%)

Query: 26  SRYARIGQIEN---ARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLF----ETTP 78
           SR ++I Q  N   AR++FD  P    TT  WN ++  +   + PH+A+  +    +T P
Sbjct: 44  SRLSKICQDGNPQLARQLFDAIPK--PTTVLWNTIIIGFICNNLPHEALLFYSRMKKTAP 101

Query: 79  EKNIVSW-------------------------------------NGMVSGFVKNGMVAEA 101
             N  ++                                     N +++ +V      + 
Sbjct: 102 FTNCDAYTYSSTLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPDC 161

Query: 102 ------RRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV----VSWTVML 151
                 R+VFD M  +NVV+W +++  YV+ G   EA R F  M    V    VS+  + 
Sbjct: 162 FEYDVVRKVFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVKPSPVSFVNVF 221

Query: 152 GGLLKDSRVEDARKLFDMMP------VKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRN 205
             +     ++ A   + +M       VKD+  V++ I  Y E G +E +R +FD   +RN
Sbjct: 222 PAVSISRSIKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDIESSRRVFDSCVERN 281

Query: 206 VVTWTTMVSGYARNRRVDVARKLF-EVMPERNEVS--WTAMLMGYTHSGRMR-EASEFFD 261
           +  W TM+  Y +N  +  + +LF E +  +  VS   T +L     S   + E    F 
Sbjct: 282 IEVWNTMIGVYVQNDCLVESIELFLEAIGSKEIVSDEVTYLLAASAVSALQQVELGRQFH 341

Query: 262 AMPVK-----PVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFEL 316
               K     P+V  N +++ +   G V ++  VF  MRERD  +W+ MI  + + G + 
Sbjct: 342 GFVSKNFRELPIVIVNSLMVMYSRCGSVHKSFGVFLSMRERDVVSWNTMISAFVQNGLDD 401

Query: 317 EALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALI 376
           E L L   MQ++G  +++                + G+Q HA L+R    Q   + S LI
Sbjct: 402 EGLMLVYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHAFLIRQGI-QFEGMNSYLI 460

Query: 377 TMYVKCGDLVRAKWIF--NRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPD 434
            MY K G +  ++ +F  + Y  +D   WNSMI+GY+Q+G  E+   VFR M    + P+
Sbjct: 461 DMYSKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEKTFLVFRKMLEQNIRPN 520

Query: 435 DISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIV 494
            ++   +L ACS  G V  G+++      +  ++  +   + +VD+  +AG +  A ++ 
Sbjct: 521 AVTVASILPACSQIGSVDLGKQL-HGFSIRQYLDQNVFVASALVDMYSKAGAIKYAEDMF 579

Query: 495 EKMPMEPDAIVWGSLL 510
            +   E +++ + +++
Sbjct: 580 SQTK-ERNSVTYTTMI 594



 Score = 93.2 bits (230), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 89/370 (24%), Positives = 158/370 (42%), Gaps = 69/370 (18%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLF-ETTPEK 80
           + AIS YA +G IE++R+VFD    + R    WN M+  Y Q     +++ LF E    K
Sbjct: 255 SSAISMYAELGDIESSRRVFDSC--VERNIEVWNTMIGVYVQNDCLVESIELFLEAIGSK 312

Query: 81  NIVS-----------------------WNGMVSG----------------FVKNGMVAEA 101
            IVS                       ++G VS                 + + G V ++
Sbjct: 313 EIVSDEVTYLLAASAVSALQQVELGRQFHGFVSKNFRELPIVIVNSLMVMYSRCGSVHKS 372

Query: 102 RRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEK----NVVSWTVMLGGLLKD 157
             VF +M  R+VVSW +M+  +VQ G  +E   L + M ++    + ++ T +L     +
Sbjct: 373 FGVFLSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSA-ASN 431

Query: 158 SRVEDARKLFDMMPVKDVVAVTNM----IGGYCEEGRLEEARALFD--EMPKRNVVTWTT 211
            R ++  K      ++  +    M    I  Y + G +  ++ LF+     +R+  TW +
Sbjct: 432 LRNKEIGKQTHAFLIRQGIQFEGMNSYLIDMYSKSGLIRISQKLFEGSGYAERDQATWNS 491

Query: 212 MVSGYARNRRVD----VARKLFEVMPERNEVSWTAMLMGYTHSGRMR--------EASEF 259
           M+SGY +N   +    V RK+ E     N V+  ++L   +  G +            ++
Sbjct: 492 MISGYTQNGHTEKTFLVFRKMLEQNIRPNAVTVASILPACSQIGSVDLGKQLHGFSIRQY 551

Query: 260 FDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEAL 319
            D    + V   + ++  +   G +  A+ +F + +ER+  T++ MI  Y + G    A+
Sbjct: 552 LD----QNVFVASALVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMILGYGQHGMGERAI 607

Query: 320 GLFARMQREG 329
            LF  MQ  G
Sbjct: 608 SLFLSMQESG 617



 Score = 87.4 bits (215), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/361 (22%), Positives = 162/361 (44%), Gaps = 33/361 (9%)

Query: 177 AVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERN 236
           ++ + +   C++G  + AR LFD +PK   V W T++ G+  N     A   +  M +  
Sbjct: 41  SIRSRLSKICQDGNPQLARQLFDAIPKPTTVLWNTIIIGFICNNLPHEALLFYSRMKKTA 100

Query: 237 EVSWTAMLMGYTHSGRMREASEFFDAMPVKPV-------------VACNEMIMGF----- 278
             +       YT+S  ++  +E  +    K V             V  N ++  +     
Sbjct: 101 PFTNCD---AYTYSSTLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLN 157

Query: 279 ---GFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEA---LGLFARMQREGAAL 332
               F+ DV R   VF+ MR ++   W+ +I  Y + G   EA    G+  RM+ + + +
Sbjct: 158 APDCFEYDVVRK--VFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVKPSPV 215

Query: 333 NFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIF 392
           +F                +    +  +L   E+ +DL+V S+ I+MY + GD+  ++ +F
Sbjct: 216 SFVNVFPAVSISRSIKKANVFYGLMLKL-GDEYVKDLFVVSSAISMYAELGDIESSRRVF 274

Query: 393 NRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSG-VPPDDISFIGVLSACSYSGKV 451
           +    +++ +WN+MI  Y Q+    E++ +F +   S  +  D+++++   SA S   +V
Sbjct: 275 DSCVERNIEVWNTMIGVYVQNDCLVESIELFLEAIGSKEIVSDEVTYLLAASAVSALQQV 334

Query: 452 KEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLG 511
           + GR+    +   ++  P +   + MV +  R G V+ +  +   M  E D + W +++ 
Sbjct: 335 ELGRQFHGFVSKNFRELPIVIVNSLMV-MYSRCGSVHKSFGVFLSM-RERDVVSWNTMIS 392

Query: 512 A 512
           A
Sbjct: 393 A 393



 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 124/294 (42%), Gaps = 52/294 (17%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRV---------- 104
           N+++  Y +    H++  +F +  E+++VSWN M+S FV+NG+  E   +          
Sbjct: 357 NSLMVMYSRCGSVHKSFGVFLSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFK 416

Query: 105 FDAMPVRNVVSWTSMVRG----------------------------YVQEGNVEEAERLF 136
            D + V  ++S  S +R                             Y + G +  +++LF
Sbjct: 417 IDYITVTALLSAASNLRNKEIGKQTHAFLIRQGIQFEGMNSYLIDMYSKSGLIRISQKLF 476

Query: 137 --WRMPEKNVVSWTVMLGGLLKDSRVEDA----RKLFDMMPVKDVVAVTNMIGGYCEEGR 190
                 E++  +W  M+ G  ++   E      RK+ +     + V V +++    + G 
Sbjct: 477 EGSGYAERDQATWNSMISGYTQNGHTEKTFLVFRKMLEQNIRPNAVTVASILPACSQIGS 536

Query: 191 LEEARAL----FDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMG 246
           ++  + L      +   +NV   + +V  Y++   +  A  +F    ERN V++T M++G
Sbjct: 537 VDLGKQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMILG 596

Query: 247 YTHSGRMREASEFFDAMP---VKP-VVACNEMIMGFGFDGDVDRAKAVFEKMRE 296
           Y   G    A   F +M    +KP  +    ++    + G +D    +FE+MRE
Sbjct: 597 YGQHGMGERAISLFLSMQESGIKPDAITFVAVLSACSYSGLIDEGLKIFEEMRE 650



 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/301 (20%), Positives = 130/301 (43%), Gaps = 42/301 (13%)

Query: 15  VRFQCTSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLF 74
           ++F+  ++  I  Y++ G I  ++K+F+ + +  R  ++WN+M++ Y Q     +   +F
Sbjct: 450 IQFEGMNSYLIDMYSKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEKTFLVF 509

Query: 75  ETTPEKNI----VSWNGMVSGFVKNGMVAEARRVFDAMPVR-----NVVSWTSMVRGYVQ 125
               E+NI    V+   ++    + G V   +++     +R     NV   +++V  Y +
Sbjct: 510 RKMLEQNIRPNAVTVASILPACSQIGSVDLGKQL-HGFSIRQYLDQNVFVASALVDMYSK 568

Query: 126 EGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVK----DVVAVTNM 181
            G ++ AE +F +  E+N V++T M+ G  +    E A  LF  M       D +    +
Sbjct: 569 AGAIKYAEDMFSQTKERNSVTYTTMILGYGQHGMGERAISLFLSMQESGIKPDAITFVAV 628

Query: 182 IGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWT 241
           +      G ++E   +F+EM                        R+++ + P        
Sbjct: 629 LSACSYSGLIDEGLKIFEEM------------------------REVYNIQPSSEHYCCI 664

Query: 242 AMLMGYTHSGRMREASEFFDAMPVKPVVA--CNEMIMGFGFDGDVDRAKAVFEKMRERDD 299
             ++G    GR+ EA EF   +  +  +A     ++      G+++ A+ V E++ + D 
Sbjct: 665 TDMLG--RVGRVNEAYEFVKGLGEEGNIAELWGSLLGSCKLHGELELAETVSERLAKFDK 722

Query: 300 G 300
           G
Sbjct: 723 G 723


>AT3G01580.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:223529-225511 REVERSE
           LENGTH=660
          Length = 660

 Score =  273 bits (698), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 169/549 (30%), Positives = 284/549 (51%), Gaps = 34/549 (6%)

Query: 86  NGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM------ 139
           + ++  ++K G + EA R+FD +   ++V+W+SMV G+ + G+  +A   F RM      
Sbjct: 100 SSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDV 159

Query: 140 -PEKNVVSWTVMLGGLLKDSRVEDARKLFDMMP--VKDVVAVTNMIGGYCEEGRLEEARA 196
            P++  +   V     L +SR+      F +      D+  V +++  Y +    +EA  
Sbjct: 160 TPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVN 219

Query: 197 LFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVM----PERNEVSWTAMLMG------ 246
           LF  + +++V++W+T+++ Y +N     A  +F  M     E N  +   +L        
Sbjct: 220 LFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHD 279

Query: 247 -----YTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGT 301
                 TH   +R+  E      VK   A  +M M        + A AVF ++  +D  +
Sbjct: 280 LEQGRKTHELAIRKGLE----TEVKVSTALVDMYMKCF---SPEEAYAVFSRIPRKDVVS 332

Query: 302 WSAMIKVYERKGFELEALGLFARMQREGAAL-NFPXXXXXXXXXXXXXXXDHGRQVHARL 360
           W A+I  +   G    ++  F+ M  E     +                 +  +  H+ +
Sbjct: 333 WVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYV 392

Query: 361 VRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEAL 420
           ++  FD + ++ ++L+ +Y +CG L  A  +FN   LKD V+W S+ITGY  HG G +AL
Sbjct: 393 IKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTVVWTSLITGYGIHGKGTKAL 452

Query: 421 NVFRDMCLSG-VPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVD 479
             F  M  S  V P++++F+ +LSACS++G + EG  IF+ M   Y++ P +EHYA +VD
Sbjct: 453 ETFNHMVKSSEVKPNEVTFLSILSACSHAGLIHEGLRIFKLMVNDYRLAPNLEHYAVLVD 512

Query: 480 LLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGP 539
           LLGR G ++ A+EI ++MP  P   + G+LLGACR H   ++AE   +KL +LE  +AG 
Sbjct: 513 LLGRVGDLDTAIEITKRMPFSPTPQILGTLLGACRIHQNGEMAETVAKKLFELESNHAGY 572

Query: 540 YVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPI 599
           Y+L+S++Y  KG WE+VE +R  +K R + K    S IE+ +K H FV  D+  HPE+  
Sbjct: 573 YMLMSNVYGVKGEWENVEKLRNSVKQRGIKKGLAESLIEIRRKVHRFV-ADDELHPEKEP 631

Query: 600 IMKMLERLD 608
           +  +L+ LD
Sbjct: 632 VYGLLKELD 640



 Score =  145 bits (366), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 114/444 (25%), Positives = 207/444 (46%), Gaps = 33/444 (7%)

Query: 100 EARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM------PEKNVVSWTVMLGG 153
           +AR++F  M  R++  W ++++   +E   EE    F  M      P+   +   +   G
Sbjct: 12  DARQMFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACG 71

Query: 154 LLKDSRVEDARKLF---DMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWT 210
            L++    +    F   D+    D+   +++I  Y + GR+ EA  +FDE+ K ++VTW+
Sbjct: 72  ELREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWS 131

Query: 211 TMVSGYARN----RRVDVARKLF---EVMPER-NEVSWTAMLMGYTHSGRMREASEFF-- 260
           +MVSG+ +N    + V+  R++    +V P+R   ++  +     ++S   R    F   
Sbjct: 132 SMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIR 191

Query: 261 -----DAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFE 315
                D   V  ++ C      F        A  +F+ + E+D  +WS +I  Y + G  
Sbjct: 192 RGFSNDLSLVNSLLNCYAKSRAF------KEAVNLFKMIAEKDVISWSTVIACYVQNGAA 245

Query: 316 LEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASAL 375
            EAL +F  M  +G   N                 + GR+ H   +R   + ++ V++AL
Sbjct: 246 AEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTAL 305

Query: 376 ITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCL-SGVPPD 434
           + MY+KC     A  +F+R P KDVV W ++I+G++ +G+   ++  F  M L +   PD
Sbjct: 306 VDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPD 365

Query: 435 DISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIV 494
            I  + VL +CS  G +++ +  F S   KY  +      A +V+L  R G + +A ++ 
Sbjct: 366 AILMVKVLGSCSELGFLEQAK-CFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVF 424

Query: 495 EKMPMEPDAIVWGSLLGACRTHMK 518
             + ++ D +VW SL+     H K
Sbjct: 425 NGIALK-DTVVWTSLITGYGIHGK 447



 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 119/246 (48%), Gaps = 16/246 (6%)

Query: 276 MGF--GFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALN 333
           MGF   F   VD A+ +F +M +R    W+ ++K   R+    E L  F+ M R+    +
Sbjct: 1   MGFCRKFSSSVD-ARQMFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPD 59

Query: 334 FPXXXXXXXXXXXXXXXDHGRQVHARLVRS-EFDQDLYVASALITMYVKCGDLVRAKWIF 392
                            ++G  +H  + +      DLYV S+LI MY+KCG ++ A  +F
Sbjct: 60  NFTLPVALKACGELREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMF 119

Query: 393 NRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCL-SGVPPDDISFIGVLSACSYSGKV 451
           +     D+V W+SM++G+ ++G   +A+  FR M + S V PD ++ I ++SAC+     
Sbjct: 120 DELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNS 179

Query: 452 KEGREIFESMKCKYQVEPGIEHYACMVDLL----GRAGQVNDAVEIVEKMPMEPDAIVWG 507
           + GR +       + +  G  +   +V+ L     ++    +AV +  KM  E D I W 
Sbjct: 180 RLGRCVH-----GFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLF-KMIAEKDVISWS 233

Query: 508 SLLGAC 513
           +++ AC
Sbjct: 234 TVI-AC 238



 Score = 86.3 bits (212), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 122/268 (45%), Gaps = 48/268 (17%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAM------ 108
           N+++  Y ++    +AV LF+   EK+++SW+ +++ +V+NG  AEA  VF+ M      
Sbjct: 202 NSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTE 261

Query: 109 ----------------------------PVRN-----VVSWTSMVRGYVQEGNVEEAERL 135
                                        +R      V   T++V  Y++  + EEA  +
Sbjct: 262 PNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAV 321

Query: 136 FWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVK-----DVVAVTNMIGGYCEEGR 190
           F R+P K+VVSW  ++ G   +     + + F +M ++     D + +  ++G   E G 
Sbjct: 322 FSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSELGF 381

Query: 191 LEEARALFDEMPK----RNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMG 246
           LE+A+     + K     N     ++V  Y+R   +  A K+F  +  ++ V WT+++ G
Sbjct: 382 LEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTVVWTSLITG 441

Query: 247 YTHSGRMREASEFFDAMPVKPVVACNEM 274
           Y   G+  +A E F+ M     V  NE+
Sbjct: 442 YGIHGKGTKALETFNHMVKSSEVKPNEV 469



 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 152/365 (41%), Gaps = 63/365 (17%)

Query: 22  TGAISRYARIGQIENARKVFDE--TPHIHRTTSSWNAMVAAYFQAHQPHQAVTLF----- 74
           +  I  Y + G++  A ++FDE   P I     +W++MV+ + +   P+QAV  F     
Sbjct: 100 SSLIYMYIKCGRMIEALRMFDELEKPDI----VTWSSMVSGFEKNGSPYQAVEFFRRMVM 155

Query: 75  --ETTPEK----NIVSW-----------------------------NGMVSGFVKNGMVA 99
             + TP++     +VS                              N +++ + K+    
Sbjct: 156 ASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFK 215

Query: 100 EARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM----PEKNVVSWTVMLGGLL 155
           EA  +F  +  ++V+SW++++  YVQ G   EA  +F  M     E NV +   +L    
Sbjct: 216 EAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACA 275

Query: 156 KDSRVEDARKLFDMMPVK----DVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTT 211
               +E  RK  ++   K    +V   T ++  Y +    EEA A+F  +P+++VV+W  
Sbjct: 276 AAHDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVA 335

Query: 212 MVSGYARNRRVDVARKLFEVMPERNEVSWTAMLM----GYTHSGRMREASEFFDAMPVKP 267
           ++SG+  N     + + F +M   N     A+LM    G        E ++ F +  +K 
Sbjct: 336 LISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYVIKY 395

Query: 268 VVACNEMIMG-----FGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLF 322
               N  I       +   G +  A  VF  +  +D   W+++I  Y   G   +AL  F
Sbjct: 396 GFDSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTVVWTSLITGYGIHGKGTKALETF 455

Query: 323 ARMQR 327
             M +
Sbjct: 456 NHMVK 460



 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 117/285 (41%), Gaps = 29/285 (10%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVV 114
            A+V  Y +   P +A  +F   P K++VSW  ++SGF  NGM   +   F  M + N  
Sbjct: 303 TALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNT 362

Query: 115 SWTSM----VRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKD-----SRVEDARK 165
              ++    V G   E    E  + F     K        +G  L +       + +A K
Sbjct: 363 RPDAILMVKVLGSCSELGFLEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASK 422

Query: 166 LFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKR-----NVVTWTTMVSGYARNR 220
           +F+ + +KD V  T++I GY   G+  +A   F+ M K      N VT+ +++S  +   
Sbjct: 423 VFNGIALKDTVVWTSLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHAG 482

Query: 221 RVDVARKLFEVM-------PERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNE 273
            +    ++F++M       P     +    L+G    G +  A E    MP  P      
Sbjct: 483 LIHEGLRIFKLMVNDYRLAPNLEHYAVLVDLLGRV--GDLDTAIEITKRMPFSPTPQILG 540

Query: 274 MIMG---FGFDGDVDR--AKAVFEKMRERDDGTWSAMIKVYERKG 313
            ++G      +G++    AK +FE +     G +  M  VY  KG
Sbjct: 541 TLLGACRIHQNGEMAETVAKKLFE-LESNHAGYYMLMSNVYGVKG 584


>AT1G69350.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:26069882-26072245 FORWARD
           LENGTH=787
          Length = 787

 Score =  269 bits (688), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 179/627 (28%), Positives = 303/627 (48%), Gaps = 61/627 (9%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTP--- 78
           T  +  Y + G + +A KVFD  P   R   +W+ +V++  +  +  +A+ +F+      
Sbjct: 140 TSLLCMYGQTGNLSDAEKVFDGMPV--RDLVAWSTLVSSCLENGEVVKALRMFKCMVDDG 197

Query: 79  -EKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVR----NVVSWTSMVRGYVQEGNVEEAE 133
            E + V+   +V G  + G +  AR V   +  +    +     S++  Y + G++  +E
Sbjct: 198 VEPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDLDETLCNSLLTMYSKCGDLLSSE 257

Query: 134 RLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLF----------DMMPVKDVVAVTNMIG 183
           R+F ++ +KN VSWT M+    +    E A + F          +++ +  V++   +IG
Sbjct: 258 RIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFSEMIKSGIEPNLVTLYSVLSSCGLIG 317

Query: 184 GYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAM 243
               EG+     A+  E+          +V  YA   ++     +  V+ +RN V+W ++
Sbjct: 318 -LIREGKSVHGFAVRRELDPNYESLSLALVELYAECGKLSDCETVLRVVSDRNIVAWNSL 376

Query: 244 LMGYTHSGRMREASEFFDAMP---VKP--------VVAC--------------------- 271
           +  Y H G + +A   F  M    +KP        + AC                     
Sbjct: 377 ISLYAHRGMVIQALGLFRQMVTQRIKPDAFTLASSISACENAGLVPLGKQIHGHVIRTDV 436

Query: 272 ------NEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARM 325
                 N +I  +   G VD A  VF +++ R   TW++M+  + + G  +EA+ LF  M
Sbjct: 437 SDEFVQNSLIDMYSKSGSVDSASTVFNQIKHRSVVTWNSMLCGFSQNGNSVEAISLFDYM 496

Query: 326 QREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDL 385
                 +N                 + G+ VH +L+ S   +DL+  +ALI MY KCGDL
Sbjct: 497 YHSYLEMNEVTFLAVIQACSSIGSLEKGKWVHHKLIISGL-KDLFTDTALIDMYAKCGDL 555

Query: 386 VRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSAC 445
             A+ +F     + +V W+SMI  Y  HG    A++ F  M  SG  P+++ F+ VLSAC
Sbjct: 556 NAAETVFRAMSSRSIVSWSSMINAYGMHGRIGSAISTFNQMVESGTKPNEVVFMNVLSAC 615

Query: 446 SYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIV 505
            +SG V+EG+  F  MK  + V P  EH+AC +DLL R+G + +A   +++MP   DA V
Sbjct: 616 GHSGSVEEGKYYFNLMK-SFGVSPNSEHFACFIDLLSRSGDLKEAYRTIKEMPFLADASV 674

Query: 506 WGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKT 565
           WGSL+  CR H K+D+ +     L+ +   + G Y LLS++YA +G WE+   +R  +K+
Sbjct: 675 WGSLVNGCRIHQKMDIIKAIKNDLSDIVTDDTGYYTLLSNIYAEEGEWEEFRRLRSAMKS 734

Query: 566 RSVIKLPGYSWIEVEKKAHMFVGGDNN 592
            ++ K+PGYS IE+++K   F  G+ N
Sbjct: 735 SNLKKVPGYSAIEIDQKVFRFGAGEEN 761



 Score =  147 bits (371), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 134/586 (22%), Positives = 258/586 (44%), Gaps = 102/586 (17%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKN 81
           T  I  YA +G  +++R VF+  P+    +  +  ++      H    A+ L+       
Sbjct: 38  TKLIESYAFMGSPDSSRLVFEAFPY--PDSFMYGVLIKCNVWCHLLDAAIDLYH-----R 90

Query: 82  IVSWNGMVSGFVKNGMV---AEAR-----------RVFDAMPVRNVVSWTSMVRGYVQEG 127
           +VS    +S FV   ++   A +R           R+       + V  TS++  Y Q G
Sbjct: 91  LVSETTQISKFVFPSVLRACAGSREHLSVGGKVHGRIIKGGVDDDAVIETSLLCMYGQTG 150

Query: 128 NVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVK----DVVAVTNMIG 183
           N+ +AE++F  MP +++V+W+ ++   L++  V  A ++F  M       D V + +++ 
Sbjct: 151 NLSDAEKVFDGMPVRDLVAWSTLVSSCLENGEVVKALRMFKCMVDDGVEPDAVTMISVVE 210

Query: 184 GYCEEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVS 239
           G  E G L  AR++  ++ ++    +     ++++ Y++   +  + ++FE + ++N VS
Sbjct: 211 GCAELGCLRIARSVHGQITRKMFDLDETLCNSLLTMYSKCGDLLSSERIFEKIAKKNAVS 270

Query: 240 WTAMLMGYTHSGRMREASEFFDAM---PVKP-VVACNEMIMGFGFDGDVDRAKAV--FEK 293
           WTAM+  Y       +A   F  M    ++P +V    ++   G  G +   K+V  F  
Sbjct: 271 WTAMISSYNRGEFSEKALRSFSEMIKSGIEPNLVTLYSVLSSCGLIGLIREGKSVHGFAV 330

Query: 294 MRERDDG----------------------------------TWSAMIKVYERKGFELEAL 319
            RE D                                     W+++I +Y  +G  ++AL
Sbjct: 331 RRELDPNYESLSLALVELYAECGKLSDCETVLRVVSDRNIVAWNSLISLYAHRGMVIQAL 390

Query: 320 GLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMY 379
           GLF +M  +    +                   G+Q+H  ++R++   D +V ++LI MY
Sbjct: 391 GLFRQMVTQRIKPDAFTLASSISACENAGLVPLGKQIHGHVIRTDV-SDEFVQNSLIDMY 449

Query: 380 VKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFI 439
            K G +  A  +FN+   + VV WNSM+ G+SQ+G   EA+++F  M  S +  ++++F+
Sbjct: 450 SKSGSVDSASTVFNQIKHRSVVTWNSMLCGFSQNGNSVEAISLFDYMYHSYLEMNEVTFL 509

Query: 440 GVLSACSYSGKVKEG-----REIFESMKCKYQVEPGIEHYA-C----------------- 476
            V+ ACS  G +++G     + I   +K  +     I+ YA C                 
Sbjct: 510 AVIQACSSIGSLEKGKWVHHKLIISGLKDLFTDTALIDMYAKCGDLNAAETVFRAMSSRS 569

Query: 477 ------MVDLLGRAGQVNDAVEIVEKM---PMEPDAIVWGSLLGAC 513
                 M++  G  G++  A+    +M     +P+ +V+ ++L AC
Sbjct: 570 IVSWSSMINAYGMHGRIGSAISTFNQMVESGTKPNEVVFMNVLSAC 615



 Score =  119 bits (299), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 160/353 (45%), Gaps = 22/353 (6%)

Query: 173 KDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVM 232
           +D + VT +I  Y   G  + +R +F+  P  +   +  ++        +D A  L+  +
Sbjct: 32  RDPLPVTKLIESYAFMGSPDSSRLVFEAFPYPDSFMYGVLIKCNVWCHLLDAAIDLYHRL 91

Query: 233 PERNEVSWTAMLMGYTHSGRMREASEFFDAMPV--------------KPVVACNEMIMGF 278
                VS T  +  +     +R  +   + + V                 V    ++  +
Sbjct: 92  -----VSETTQISKFVFPSVLRACAGSREHLSVGGKVHGRIIKGGVDDDAVIETSLLCMY 146

Query: 279 GFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXX 338
           G  G++  A+ VF+ M  RD   WS ++      G  ++AL +F  M  +G   +     
Sbjct: 147 GQTGNLSDAEKVFDGMPVRDLVAWSTLVSSCLENGEVVKALRMFKCMVDDGVEPDAVTMI 206

Query: 339 XXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLK 398
                          R VH ++ R  FD D  + ++L+TMY KCGDL+ ++ IF +   K
Sbjct: 207 SVVEGCAELGCLRIARSVHGQITRKMFDLDETLCNSLLTMYSKCGDLLSSERIFEKIAKK 266

Query: 399 DVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIF 458
           + V W +MI+ Y++    E+AL  F +M  SG+ P+ ++   VLS+C   G ++EG+ + 
Sbjct: 267 NAVSWTAMISSYNRGEFSEKALRSFSEMIKSGIEPNLVTLYSVLSSCGLIGLIREGKSV- 325

Query: 459 ESMKCKYQVEPGIEHYA-CMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLL 510
                + +++P  E  +  +V+L    G+++D  E V ++  + + + W SL+
Sbjct: 326 HGFAVRRELDPNYESLSLALVELYAECGKLSDC-ETVLRVVSDRNIVAWNSLI 377


>AT4G04370.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:2134060-2136249 REVERSE
           LENGTH=729
          Length = 729

 Score =  269 bits (687), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 190/652 (29%), Positives = 315/652 (48%), Gaps = 81/652 (12%)

Query: 21  STGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAY-----------------FQ 63
           S+  ++ YA+ G + +ARKVF+E     R    W AM+  Y                 FQ
Sbjct: 84  SSSLVNLYAKFGLLAHARKVFEEMRE--RDVVHWTAMIGCYSRAGIVGEACSLVNEMRFQ 141

Query: 64  AHQPHQAVTLFETTP--------------------EKNIVSWNGMVSGFVKNGMVAEARR 103
             +P   VTL E                       + +I   N M++ + K   V +A+ 
Sbjct: 142 GIKP-GPVTLLEMLSGVLEITQLQCLHDFAVIYGFDCDIAVMNSMLNLYCKCDHVGDAKD 200

Query: 104 VFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM------PEKNVVSWTVMLGGLLKD 157
           +FD M  R++VSW +M+ GY   GN+ E  +L +RM      P++     ++ + G + D
Sbjct: 201 LFDQMEQRDMVSWNTMISGYASVGNMSEILKLLYRMRGDGLRPDQQTFGASLSVSGTMCD 260

Query: 158 SRVEDARKL--------FDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTW 209
             +E  R L        FD+    D+   T +I  Y + G+ E +  + + +P ++VV W
Sbjct: 261 --LEMGRMLHCQIVKTGFDV----DMHLKTALITMYLKCGKEEASYRVLETIPNKDVVCW 314

Query: 210 TTMVSGYARNRRVDVARKLF-EVMPERNEVSWTAML-------------MGYTHSGRMRE 255
           T M+SG  R  R + A  +F E++   +++S  A+              +G +  G +  
Sbjct: 315 TVMISGLMRLGRAEKALIVFSEMLQSGSDLSSEAIASVVASCAQLGSFDLGASVHGYVLR 374

Query: 256 ASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFE 315
                D     P  A N +I  +   G +D++  +FE+M ERD  +W+A+I  Y +    
Sbjct: 375 HGYTLDT----P--ALNSLITMYAKCGHLDKSLVIFERMNERDLVSWNAIISGYAQNVDL 428

Query: 316 LEALGLFARMQ-REGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASA 374
            +AL LF  M+ +    ++                   G+ +H  ++RS       V +A
Sbjct: 429 CKALLLFEEMKFKTVQQVDSFTVVSLLQACSSAGALPVGKLIHCIVIRSFIRPCSLVDTA 488

Query: 375 LITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPD 434
           L+ MY KCG L  A+  F+    KDVV W  +I GY  HG G+ AL ++ +   SG+ P+
Sbjct: 489 LVDMYSKCGYLEAAQRCFDSISWKDVVSWGILIAGYGFHGKGDIALEIYSEFLHSGMEPN 548

Query: 435 DISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIV 494
            + F+ VLS+CS++G V++G +IF SM   + VEP  EH AC+VDLL RA ++ DA +  
Sbjct: 549 HVIFLAVLSSCSHNGMVQQGLKIFSSMVRDFGVEPNHEHLACVVDLLCRAKRIEDAFKFY 608

Query: 495 EKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWE 554
           ++    P   V G +L ACR + K ++ ++  E + +L+P +AG YV L H +A+  RW+
Sbjct: 609 KENFTRPSIDVLGIILDACRANGKTEVEDIICEDMIELKPGDAGHYVKLGHSFAAMKRWD 668

Query: 555 DVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLER 606
           DV     ++++  + KLPG+S IE+  K   F     +   +   ++K+L R
Sbjct: 669 DVSESWNQMRSLGLKKLPGWSKIEMNGKTTTFFMNHTSHSDDTVSLLKLLSR 720



 Score =  131 bits (330), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/415 (25%), Positives = 190/415 (45%), Gaps = 26/415 (6%)

Query: 173 KDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVM 232
            D    ++++  Y + G L  AR +F+EM +R+VV WT M+  Y+R   V  A  L   M
Sbjct: 79  SDFYISSSLVNLYAKFGLLAHARKVFEEMRERDVVHWTAMIGCYSRAGIVGEACSLVNEM 138

Query: 233 ----PERNEVSWTAMLMGYTHSGRMREASEF-----FDAMPVKPVVACNEMIMGFGFDGD 283
                +   V+   ML G     +++   +F     FD      +   N M+  +     
Sbjct: 139 RFQGIKPGPVTLLEMLSGVLEITQLQCLHDFAVIYGFDC----DIAVMNSMLNLYCKCDH 194

Query: 284 VDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXX 343
           V  AK +F++M +RD  +W+ MI  Y   G   E L L  RM+ +G   +          
Sbjct: 195 VGDAKDLFDQMEQRDMVSWNTMISGYASVGNMSEILKLLYRMRGDGLRPDQQTFGASLSV 254

Query: 344 XXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMW 403
                  + GR +H ++V++ FD D+++ +ALITMY+KCG    +  +    P KDVV W
Sbjct: 255 SGTMCDLEMGRMLHCQIVKTGFDVDMHLKTALITMYLKCGKEEASYRVLETIPNKDVVCW 314

Query: 404 NSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIF-ESMK 462
             MI+G  + G  E+AL VF +M  SG      +   V+++C+  G    G  +    ++
Sbjct: 315 TVMISGLMRLGRAEKALIVFSEMLQSGSDLSSEAIASVVASCAQLGSFDLGASVHGYVLR 374

Query: 463 CKYQVE-PGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDL 521
             Y ++ P +     ++ +  + G ++ ++ I E+M  E D + W +++     ++ L  
Sbjct: 375 HGYTLDTPALNS---LITMYAKCGHLDKSLVIFERMN-ERDLVSWNAIISGYAQNVDLCK 430

Query: 522 AEVAVEKLAQLEPKNAGPYVLLSHMYASK-------GRWEDVEVVREKIKTRSVI 569
           A +  E++     +    + ++S + A         G+     V+R  I+  S++
Sbjct: 431 ALLLFEEMKFKTVQQVDSFTVVSLLQACSSAGALPVGKLIHCIVIRSFIRPCSLV 485



 Score = 69.7 bits (169), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 79/160 (49%), Gaps = 5/160 (3%)

Query: 353 GRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQ 412
           G  +H +++ + F  D Y++S+L+ +Y K G L  A+ +F     +DVV W +MI  YS+
Sbjct: 65  GLSIHQQVLVNGFSSDFYISSSLVNLYAKFGLLAHARKVFEEMRERDVVHWTAMIGCYSR 124

Query: 413 HGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIE 472
            G+  EA ++  +M   G+ P  ++ + +LS      ++    +        Y  +  I 
Sbjct: 125 AGIVGEACSLVNEMRFQGIKPGPVTLLEMLSGVLEITQL----QCLHDFAVIYGFDCDIA 180

Query: 473 HYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGA 512
               M++L  +   V DA ++ ++M  + D + W +++  
Sbjct: 181 VMNSMLNLYCKCDHVGDAKDLFDQME-QRDMVSWNTMISG 219


>AT3G21470.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr3:7563503-7565074 FORWARD
           LENGTH=523
          Length = 523

 Score =  269 bits (687), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 151/424 (35%), Positives = 239/424 (56%), Gaps = 10/424 (2%)

Query: 160 VEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPK-RNVVTWTTMVSGYAR 218
           V  ARK+FD MP ++V     MIGGY   G    A  LF+E+   RN VTW  M+ GY +
Sbjct: 97  VVSARKVFDEMPERNVATWNAMIGGYMSNGDAVLASGLFEEISVCRNTVTWIEMIKGYGK 156

Query: 219 NRRVDVARKLFEVMP--ERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIM 276
              ++ AR+LFE MP   +N  +W+ ML  Y ++ +M +A +FF+ +P K     + M+ 
Sbjct: 157 RIEIEKARELFERMPFELKNVKAWSVMLGVYVNNRKMEDARKFFEDIPEKNAFVWSLMMS 216

Query: 277 GFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPX 336
           G+   GDV  A+A+F ++  RD   W+ +I  Y + G+  +A+  F  MQ EG   +   
Sbjct: 217 GYFRIGDVHEARAIFYRVFARDLVIWNTLIAGYAQNGYSDDAIDAFFNMQGEGYEPDAVT 276

Query: 337 XXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYP 396
                         D GR+VH+ +     + + +V++ALI MY KCGDL  A  +F    
Sbjct: 277 VSSILSACAQSGRLDVGREVHSLINHRGIELNQFVSNALIDMYAKCGDLENATSVFESIS 336

Query: 397 LKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGRE 456
           ++ V   NSMI+  + HG G+EAL +F  M    + PD+I+FI VL+AC + G + EG +
Sbjct: 337 VRSVACCNSMISCLAIHGKGKEALEMFSTMESLDLKPDEITFIAVLTACVHGGFLMEGLK 396

Query: 457 IFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTH 516
           IF  MK +  V+P ++H+ C++ LLGR+G++ +A  +V++M ++P+  V G+LLGAC+ H
Sbjct: 397 IFSEMKTQ-DVKPNVKHFGCLIHLLGRSGKLKEAYRLVKEMHVKPNDTVLGALLGACKVH 455

Query: 517 MKLDLAEVAVEKLAQLEPKNAGPY-----VLLSHMYASKGRWEDVEVVREKIKTRSVIKL 571
           M  ++AE  V K+ +        Y       +S++YA   RW+  E +R +++ R + K 
Sbjct: 456 MDTEMAE-QVMKIIETAGSITNSYSENHLASISNLYAHTERWQTAEALRVEMEKRGLEKS 514

Query: 572 PGYS 575
           PG S
Sbjct: 515 PGLS 518



 Score =  158 bits (399), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 168/327 (51%), Gaps = 17/327 (5%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLF-ETTPEK 80
           +  IS Y + G + +ARKVFDE P   R  ++WNAM+  Y        A  LF E +  +
Sbjct: 85  SSLISMYGKCGCVVSARKVFDEMP--ERNVATWNAMIGGYMSNGDAVLASGLFEEISVCR 142

Query: 81  NIVSWNGMVSGFVKNGMVAEARRVFDAMP--VRNVVSWTSMVRGYVQEGNVEEAERLFWR 138
           N V+W  M+ G+ K   + +AR +F+ MP  ++NV +W+ M+  YV    +E+A + F  
Sbjct: 143 NTVTWIEMIKGYGKRIEIEKARELFERMPFELKNVKAWSVMLGVYVNNRKMEDARKFFED 202

Query: 139 MPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALF 198
           +PEKN   W++M+ G  +   V +AR +F  +  +D+V    +I GY + G  ++A   F
Sbjct: 203 IPEKNAFVWSLMMSGYFRIGDVHEARAIFYRVFARDLVIWNTLIAGYAQNGYSDDAIDAF 262

Query: 199 DEMP----KRNVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHS 250
             M     + + VT ++++S  A++ R+DV R++  ++  R    N+    A++  Y   
Sbjct: 263 FNMQGEGYEPDAVTVSSILSACAQSGRLDVGREVHSLINHRGIELNQFVSNALIDMYAKC 322

Query: 251 GRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMR----ERDDGTWSAMI 306
           G +  A+  F+++ V+ V  CN MI      G    A  +F  M     + D+ T+ A++
Sbjct: 323 GDLENATSVFESISVRSVACCNSMISCLAIHGKGKEALEMFSTMESLDLKPDEITFIAVL 382

Query: 307 KVYERKGFELEALGLFARMQREGAALN 333
                 GF +E L +F+ M+ +    N
Sbjct: 383 TACVHGGFLMEGLKIFSEMKTQDVKPN 409



 Score =  110 bits (276), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 145/295 (49%), Gaps = 20/295 (6%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVS 84
           I  Y +  +IE AR++F+  P   +   +W+ M+  Y    +   A   FE  PEKN   
Sbjct: 151 IKGYGKRIEIEKARELFERMPFELKNVKAWSVMLGVYVNNRKMEDARKFFEDIPEKNAFV 210

Query: 85  WNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMP---- 140
           W+ M+SG+ + G V EAR +F  +  R++V W +++ GY Q G  ++A   F+ M     
Sbjct: 211 WSLMMSGYFRIGDVHEARAIFYRVFARDLVIWNTLIAGYAQNGYSDDAIDAFFNMQGEGY 270

Query: 141 EKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVA---VTN-MIGGYCEEGRLEEARA 196
           E + V+ + +L    +  R++  R++  ++  + +     V+N +I  Y + G LE A +
Sbjct: 271 EPDAVTVSSILSACAQSGRLDVGREVHSLINHRGIELNQFVSNALIDMYAKCGDLENATS 330

Query: 197 LFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMP----ERNEVSWTAMLMGYTHSGR 252
           +F+ +  R+V    +M+S  A + +   A ++F  M     + +E+++ A+L    H G 
Sbjct: 331 VFESISVRSVACCNSMISCLAIHGKGKEALEMFSTMESLDLKPDEITFIAVLTACVHGGF 390

Query: 253 MREASEFFDAMP---VKPVV---ACNEMIMGFGFDGDVDRAKAVFEKMRERDDGT 301
           + E  + F  M    VKP V    C  +I   G  G +  A  + ++M  + + T
Sbjct: 391 LMEGLKIFSEMKTQDVKPNVKHFGC--LIHLLGRSGKLKEAYRLVKEMHVKPNDT 443



 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 104/208 (50%), Gaps = 7/208 (3%)

Query: 303 SAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVR 362
           S +IK +  +G  ++AL L+  ++R G                       G+ +H+  ++
Sbjct: 15  SNLIKNHISRGSPIQALVLYGGIRRRGVYFPGWVPLILRACACVVPRVVLGKLLHSESIK 74

Query: 363 SEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNV 422
                D+ V S+LI+MY KCG +V A+ +F+  P ++V  WN+MI GY  +G    A  +
Sbjct: 75  FGVCSDVMVGSSLISMYGKCGCVVSARKVFDEMPERNVATWNAMIGGYMSNGDAVLASGL 134

Query: 423 FRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLG 482
           F ++    V  + +++I ++       ++++ RE+FE M  + +    ++ ++ M+ +  
Sbjct: 135 FEEI---SVCRNTVTWIEMIKGYGKRIEIEKARELFERMPFELK---NVKAWSVMLGVYV 188

Query: 483 RAGQVNDAVEIVEKMPMEPDAIVWGSLL 510
              ++ DA +  E +P E +A VW  ++
Sbjct: 189 NNRKMEDARKFFEDIP-EKNAFVWSLMM 215


>AT3G04750.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:1301391-1303376 REVERSE
           LENGTH=661
          Length = 661

 Score =  268 bits (685), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 185/557 (33%), Positives = 290/557 (52%), Gaps = 35/557 (6%)

Query: 77  TPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGN--VEEAER 134
           TP  N+  +N M+S    +    E   ++ +M +R+ VS       Y+ + +  + E ++
Sbjct: 95  TPNPNVFVYNTMISAVSSSK--NECFGLYSSM-IRHRVSPDRQTFLYLMKASSFLSEVKQ 151

Query: 135 LFWRMPEKNVVSWTVMLGGLLKDSRVED---------ARKLFDMMPVKDVVAVTNMIGGY 185
           +   +    +VS  + LG  L +S V+          A K+F  MP  DV +   MI GY
Sbjct: 152 IHCHI----IVSGCLSLGNYLWNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGY 207

Query: 186 CEEGRLEEARALFDEM------PKRNVVTWTTMVSGYARNRRVD------VARKLFEVMP 233
            ++G   EA  L+ +M      P    V    +  G+  + R+       + R+    + 
Sbjct: 208 AKQGFSLEALKLYFKMVSDGIEPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERR--GPVY 265

Query: 234 ERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEK 293
             N +   A+L  Y        A   FDAM  K + + N M++GF   GD++ A+AVF++
Sbjct: 266 SSNLILSNALLDMYFKCKESGLAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQ 325

Query: 294 MRERDDGTWSAMIKVYERKGFELEAL-GLFARMQ-REGAALNFPXXXXXXXXXXXXXXXD 351
           M +RD  +W++++  Y +KG +   +  LF  M   E    +                  
Sbjct: 326 MPKRDLVSWNSLLFGYSKKGCDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGELS 385

Query: 352 HGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYS 411
           HGR VH  ++R +   D +++SALI MY KCG + RA  +F     KDV +W SMITG +
Sbjct: 386 HGRWVHGLVIRLQLKGDAFLSSALIDMYCKCGIIERAFMVFKTATEKDVALWTSMITGLA 445

Query: 412 QHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGI 471
            HG G++AL +F  M   GV P++++ + VL+ACS+SG V+EG  +F  MK K+  +P  
Sbjct: 446 FHGNGQQALQLFGRMQEEGVTPNNVTLLAVLTACSHSGLVEEGLHVFNHMKDKFGFDPET 505

Query: 472 EHYACMVDLLGRAGQVNDAVEIVE-KMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLA 530
           EHY  +VDLL RAG+V +A +IV+ KMPM P   +WGS+L ACR    ++ AE+A+ +L 
Sbjct: 506 EHYGSLVDLLCRAGRVEEAKDIVQKKMPMRPSQSMWGSILSACRGGEDIETAELALTELL 565

Query: 531 QLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGD 590
           +LEP+  G YVLLS++YA+ GRW   +  RE ++ R V K  GYS +   +  H FV  +
Sbjct: 566 KLEPEKEGGYVLLSNIYATVGRWGYSDKTREAMENRGVKKTAGYSSVVGVEGLHRFVAAE 625

Query: 591 NNCHPEQPIIMKMLERL 607
              HP    I ++L+ L
Sbjct: 626 KQNHPRWTEIKRILQHL 642



 Score =  103 bits (257), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 121/245 (49%), Gaps = 25/245 (10%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVV 114
           NA++  YF+  +   A   F+   +K++ SWN MV GFV+ G +  A+ VFD MP R++V
Sbjct: 273 NALLDMYFKCKESGLAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKRDLV 332

Query: 115 SWTSMVRGYVQEGNVEEAER-LFWRMP-----EKNVVSWTVMLGGLLKDSRVEDAR---K 165
           SW S++ GY ++G  +   R LF+ M      + + V+   ++ G   +  +   R    
Sbjct: 333 SWNSLLFGYSKKGCDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGELSHGRWVHG 392

Query: 166 LFDMMPVK-DVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDV 224
           L   + +K D    + +I  YC+ G +E A  +F    +++V  WT+M++G A +     
Sbjct: 393 LVIRLQLKGDAFLSSALIDMYCKCGIIERAFMVFKTATEKDVALWTSMITGLAFHGNGQQ 452

Query: 225 ARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGF 280
           A +LF  M E     N V+  A+L   +HSG + E    F+ M  K           FGF
Sbjct: 453 ALQLFGRMQEEGVTPNNVTLLAVLTACSHSGLVEEGLHVFNHMKDK-----------FGF 501

Query: 281 DGDVD 285
           D + +
Sbjct: 502 DPETE 506



 Score =  100 bits (248), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 173/387 (44%), Gaps = 39/387 (10%)

Query: 54  WNAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAM----- 108
           WN++V  Y +      A  +F   P  ++ S+N M+ G+ K G   EA +++  M     
Sbjct: 169 WNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDGI 228

Query: 109 -PVRNVVSWTSMVRGYVQEGNVEEA-----ERLFWRMP--EKNVVSWTVMLGGLLKDSRV 160
            P    V    +  G++ +  + +      ER   R P    N++    +L    K    
Sbjct: 229 EPDEYTVLSLLVCCGHLSDIRLGKGVHGWIER---RGPVYSSNLILSNALLDMYFKCKES 285

Query: 161 EDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYAR-- 218
             A++ FD M  KD+ +   M+ G+   G +E A+A+FD+MPKR++V+W +++ GY++  
Sbjct: 286 GLAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFGYSKKG 345

Query: 219 -NRRVDVARKLF-------EVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVA 270
            ++R    R+LF       +V P+R  V+  +++ G  ++G +     +   + ++  + 
Sbjct: 346 CDQR--TVRELFYEMTIVEKVKPDR--VTMVSLISGAANNGELSHG-RWVHGLVIRLQLK 400

Query: 271 CNEMIMGFGFD-----GDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARM 325
            +  +     D     G ++RA  VF+   E+D   W++MI      G   +AL LF RM
Sbjct: 401 GDAFLSSALIDMYCKCGIIERAFMVFKTATEKDVALWTSMITGLAFHGNGQQALQLFGRM 460

Query: 326 QREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLV-RSEFDQDLYVASALITMYVKCGD 384
           Q EG   N                 + G  V   +  +  FD +     +L+ +  + G 
Sbjct: 461 QEEGVTPNNVTLLAVLTACSHSGLVEEGLHVFNHMKDKFGFDPETEHYGSLVDLLCRAGR 520

Query: 385 LVRAKWIFN-RYPLK-DVVMWNSMITG 409
           +  AK I   + P++    MW S+++ 
Sbjct: 521 VEEAKDIVQKKMPMRPSQSMWGSILSA 547


>AT1G33350.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:12090071-12091687 REVERSE
           LENGTH=538
          Length = 538

 Score =  267 bits (683), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 140/375 (37%), Positives = 214/375 (57%), Gaps = 6/375 (1%)

Query: 238 VSWTAMLMGYTHS-GRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRE 296
           V  TA+L  Y  S   +  A + FD M  + VV+   M+ G+   GD+  A A+FE M E
Sbjct: 162 VVQTALLHSYASSVSHITLARQLFDEMSERNVVSWTAMLSGYARSGDISNAVALFEDMPE 221

Query: 297 RDDGTWSAMIKVYERKGFELEALGLFARMQREGAAL-NFPXXXXXXXXXXXXXXXDHGRQ 355
           RD  +W+A++    + G  LEA+ LF RM  E +   N                    + 
Sbjct: 222 RDVPSWNAILAACTQNGLFLEAVSLFRRMINEPSIRPNEVTVVCVLSACAQTGTLQLAKG 281

Query: 356 VHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGL 415
           +HA   R +   D++V+++L+ +Y KCG+L  A  +F     K +  WNSMI  ++ HG 
Sbjct: 282 IHAFAYRRDLSSDVFVSNSLVDLYGKCGNLEEASSVFKMASKKSLTAWNSMINCFALHGR 341

Query: 416 GEEALNVFRDMC---LSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIE 472
            EEA+ VF +M    ++ + PD I+FIG+L+AC++ G V +GR  F+ M  ++ +EP IE
Sbjct: 342 SEEAIAVFEEMMKLNINDIKPDHITFIGLLNACTHGGLVSKGRGYFDLMTNRFGIEPRIE 401

Query: 473 HYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQL 532
           HY C++DLLGRAG+ ++A+E++  M M+ D  +WGSLL AC+ H  LDLAEVAV+ L  L
Sbjct: 402 HYGCLIDLLGRAGRFDEALEVMSTMKMKADEAIWGSLLNACKIHGHLDLAEVAVKNLVAL 461

Query: 533 EPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNN 592
            P N G   +++++Y   G WE+    R+ IK ++  K PG+S IE++ + H F   D +
Sbjct: 462 NPNNGGYVAMMANLYGEMGNWEEARRARKMIKHQNAYKPPGWSRIEIDNEVHQFYSLDKS 521

Query: 593 CHPEQPIIMKMLERL 607
            HPE   I  +L+ L
Sbjct: 522 -HPETEEIYMILDSL 535



 Score = 99.8 bits (247), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 132/268 (49%), Gaps = 26/268 (9%)

Query: 70  AVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNV 129
           A  LF+   E+N+VSW  M+SG+ ++G ++ A  +F+ MP R+V SW +++    Q G  
Sbjct: 181 ARQLFDEMSERNVVSWTAMLSGYARSGDISNAVALFEDMPERDVPSWNAILAACTQNGLF 240

Query: 130 EEAERLFWRMPEK-----NVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDV---VAVTN- 180
            EA  LF RM  +     N V+   +L    +   ++ A+ +      +D+   V V+N 
Sbjct: 241 LEAVSLFRRMINEPSIRPNEVTVVCVLSACAQTGTLQLAKGIHAFAYRRDLSSDVFVSNS 300

Query: 181 MIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERN---- 236
           ++  Y + G LEEA ++F    K+++  W +M++ +A + R + A  +FE M + N    
Sbjct: 301 LVDLYGKCGNLEEASSVFKMASKKSLTAWNSMINCFALHGRSEEAIAVFEEMMKLNINDI 360

Query: 237 ---EVSWTAMLMGYTHSGRMREASEFFDAMP----VKPVV---ACNEMIMGFGFDGDVDR 286
               +++  +L   TH G + +   +FD M     ++P +    C  +I   G  G  D 
Sbjct: 361 KPDHITFIGLLNACTHGGLVSKGRGYFDLMTNRFGIEPRIEHYGC--LIDLLGRAGRFDE 418

Query: 287 AKAVFEKMRER-DDGTWSAMIKVYERKG 313
           A  V   M+ + D+  W +++   +  G
Sbjct: 419 ALEVMSTMKMKADEAIWGSLLNACKIHG 446



 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 87/194 (44%), Gaps = 41/194 (21%)

Query: 175 VVAVTNMIGGYCEE-GRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMP 233
           VV  T ++  Y      +  AR LFDEM +RNVV+WT M+SGYAR+  +  A  LFE MP
Sbjct: 161 VVVQTALLHSYASSVSHITLARQLFDEMSERNVVSWTAMLSGYARSGDISNAVALFEDMP 220

Query: 234 ERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVV------------AC---------- 271
           ER+  SW A+L   T +G   EA   F  M  +P +            AC          
Sbjct: 221 ERDVPSWNAILAACTQNGLFLEAVSLFRRMINEPSIRPNEVTVVCVLSACAQTGTLQLAK 280

Query: 272 ------------------NEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKG 313
                             N ++  +G  G+++ A +VF+   ++    W++MI  +   G
Sbjct: 281 GIHAFAYRRDLSSDVFVSNSLVDLYGKCGNLEEASSVFKMASKKSLTAWNSMINCFALHG 340

Query: 314 FELEALGLFARMQR 327
              EA+ +F  M +
Sbjct: 341 RSEEAIAVFEEMMK 354


>AT3G16610.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr3:5656371-5658335 REVERSE LENGTH=654
          Length = 654

 Score =  267 bits (683), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 177/613 (28%), Positives = 294/613 (47%), Gaps = 64/613 (10%)

Query: 28  YARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNG 87
           YA   ++E AR VFDE PH      +W+ M+ AY       +A+ L+       +     
Sbjct: 45  YASCNEVELARHVFDEIPHPRINPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKY 104

Query: 88  MVSGFVKNGMVAEARRVFDAMPVRNVVSW----------TSMVRGYVQEGNVEEAERLFW 137
                +K    A  R + D   + + V+           T++V  Y + G +E A ++F 
Sbjct: 105 TYPFVLK--ACAGLRAIDDGKLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFD 162

Query: 138 RMPEKNVVSWTVMLGGLLKDSRVEDARKLF-DMMPVK----DVVAVTNMIGGYCEEGRLE 192
            MP++++V+W  M+ G      + D   LF DM  +     ++  +  M       G L 
Sbjct: 163 EMPKRDMVAWNAMISGFSLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAGALR 222

Query: 193 EARALFDEMPK----RNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYT 248
           E +A+     +     ++V  T ++  YA+++ +  AR++F++  ++NEV+W+AM+ GY 
Sbjct: 223 EGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFDLDFKKNEVTWSAMIGGYV 282

Query: 249 HSGRMREASEFF------DAMPVKPVVACNEMIMGFGFDGDVDRAKAV------------ 290
            +  ++EA E F      D + +   VA   ++MG    GD+   + V            
Sbjct: 283 ENEMIKEAGEVFFQMLVNDNVAMVTPVAIGLILMGCARFGDLSGGRCVHCYAVKAGFILD 342

Query: 291 -----------------------FEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQR 327
                                  F ++  +D  +++++I          E+  LF  M+ 
Sbjct: 343 LTVQNTIISFYAKYGSLCDAFRQFSEIGLKDVISYNSLITGCVVNCRPEESFRLFHEMRT 402

Query: 328 EGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVR 387
            G   +                  HG   H   V   +  +  + +AL+ MY KCG L  
Sbjct: 403 SGIRPDITTLLGVLTACSHLAALGHGSSCHGYCVVHGYAVNTSICNALMDMYTKCGKLDV 462

Query: 388 AKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSY 447
           AK +F+    +D+V WN+M+ G+  HGLG+EAL++F  M  +GV PD+++ + +LSACS+
Sbjct: 463 AKRVFDTMHKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQETGVNPDEVTLLAILSACSH 522

Query: 448 SGKVKEGREIFESM-KCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVW 506
           SG V EG+++F SM +  + V P I+HY CM DLL RAG +++A + V KMP EPD  V 
Sbjct: 523 SGLVDEGKQLFNSMSRGDFNVIPRIDHYNCMTDLLARAGYLDEAYDFVNKMPFEPDIRVL 582

Query: 507 GSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTR 566
           G+LL AC T+   +L     +K+  L  +     VLLS+ Y++  RWED   +R   K R
Sbjct: 583 GTLLSACWTYKNAELGNEVSKKMQSL-GETTESLVLLSNTYSAAERWEDAARIRMIQKKR 641

Query: 567 SVIKLPGYSWIEV 579
            ++K PGYSW++V
Sbjct: 642 GLLKTPGYSWVDV 654



 Score =  130 bits (326), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 122/485 (25%), Positives = 210/485 (43%), Gaps = 41/485 (8%)

Query: 53  SWNAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVR- 111
           S N ++      H   +++TL  +T   N+         +     V  AR VFD +P   
Sbjct: 12  SRNLVLGQVIHQHLLKRSLTLSSSTVLVNLTRL------YASCNEVELARHVFDEIPHPR 65

Query: 112 -NVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV----VSWTVMLGGLLKDSRVEDARKL 166
            N ++W  M+R Y      E+A  L+++M    V     ++  +L        ++D + +
Sbjct: 66  INPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAIDDGKLI 125

Query: 167 FDMMPVKDVVA----VTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRV 222
              +   D        T ++  Y + G LE A  +FDEMPKR++V W  M+SG++ +  +
Sbjct: 126 HSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEMPKRDMVAWNAMISGFSLHCCL 185

Query: 223 DVARKLFEVM-----PERNEVSWTAMLMGYTHSGRMREASE---------FFDAMPVKPV 268
                LF  M        N  +   M      +G +RE            F + + VK  
Sbjct: 186 TDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSNDLVVK-- 243

Query: 269 VACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQ-R 327
                ++  +     +  A+ VF+   ++++ TWSAMI  Y       EA  +F +M   
Sbjct: 244 ---TGILDVYAKSKCIIYARRVFDLDFKKNEVTWSAMIGGYVENEMIKEAGEVFFQMLVN 300

Query: 328 EGAALNFPXXX-XXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLV 386
           +  A+  P                  GR VH   V++ F  DL V + +I+ Y K G L 
Sbjct: 301 DNVAMVTPVAIGLILMGCARFGDLSGGRCVHCYAVKAGFILDLTVQNTIISFYAKYGSLC 360

Query: 387 RAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACS 446
            A   F+   LKDV+ +NS+ITG   +   EE+  +F +M  SG+ PD  + +GVL+ACS
Sbjct: 361 DAFRQFSEIGLKDVISYNSLITGCVVNCRPEESFRLFHEMRTSGIRPDITTLLGVLTACS 420

Query: 447 YSGKVKEGREIF-ESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIV 505
           +   +  G       +   Y V   I +   ++D+  + G+++ A  + + M  + D + 
Sbjct: 421 HLAALGHGSSCHGYCVVHGYAVNTSICN--ALMDMYTKCGKLDVAKRVFDTMH-KRDIVS 477

Query: 506 WGSLL 510
           W ++L
Sbjct: 478 WNTML 482



 Score =  102 bits (253), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 106/463 (22%), Positives = 190/463 (41%), Gaps = 70/463 (15%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLF------- 74
           T  +  YA+ G++E A KVFDE P   R   +WNAM++ +         + LF       
Sbjct: 142 TALVDFYAKCGELEMAIKVFDEMP--KRDMVAWNAMISGFSLHCCLTDVIGLFLDMRRID 199

Query: 75  ETTP---------------------------------EKNIVSWNGMVSGFVKNGMVAEA 101
             +P                                   ++V   G++  + K+  +  A
Sbjct: 200 GLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYA 259

Query: 102 RRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWT--VMLGGLLKD-S 158
           RRVFD    +N V+W++M+ GYV+   ++EA  +F++M   + V+    V +G +L   +
Sbjct: 260 RRVFDLDFKKNEVTWSAMIGGYVENEMIKEAGEVFFQMLVNDNVAMVTPVAIGLILMGCA 319

Query: 159 RVEDAR--KLFDMMPVK-----DVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTT 211
           R  D    +      VK     D+     +I  Y + G L +A   F E+  ++V+++ +
Sbjct: 320 RFGDLSGGRCVHCYAVKAGFILDLTVQNTIISFYAKYGSLCDAFRQFSEIGLKDVISYNS 379

Query: 212 MVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAMPVKP 267
           +++G   N R + + +LF  M       +  +   +L   +H   +   S       V  
Sbjct: 380 LITGCVVNCRPEESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCVVHG 439

Query: 268 VVA----CNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFA 323
                  CN ++  +   G +D AK VF+ M +RD  +W+ M+  +   G   EAL LF 
Sbjct: 440 YAVNTSICNALMDMYTKCGKLDVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKEALSLFN 499

Query: 324 RMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQ----DLYVASALITMY 379
            MQ  G   +                 D G+Q+   + R +F+     D Y  + +  + 
Sbjct: 500 SMQETGVNPDEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRIDHY--NCMTDLL 557

Query: 380 VKCGDLVRAKWIFNRYPLK-DVVMWNSMITG---YSQHGLGEE 418
            + G L  A    N+ P + D+ +  ++++    Y    LG E
Sbjct: 558 ARAGYLDEAYDFVNKMPFEPDIRVLGTLLSACWTYKNAELGNE 600


>AT5G59200.1 | Symbols: OTP80 | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:23888793-23890427 REVERSE
           LENGTH=544
          Length = 544

 Score =  266 bits (681), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 153/457 (33%), Positives = 247/457 (54%), Gaps = 5/457 (1%)

Query: 160 VEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARN 219
           V+ A  +F  +   +V   T MI G+   GR  +  +L+  M   +V+    +++   + 
Sbjct: 77  VDYAYDVFSYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKA 136

Query: 220 RRVDVARKLFEVMPERNEVSWTA----MLMGYTHSGRMREASEFFDAMPVKPVVACNEMI 275
             + V R++   + +    S  +    M+  Y  SG +  A + FD MP +  VA   MI
Sbjct: 137 CDLKVCREIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMI 196

Query: 276 MGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFP 335
             +   G +  A  +F+ ++ +D   W+AMI    R     +AL LF  MQ E  + N  
Sbjct: 197 NCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSANEF 256

Query: 336 XXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRY 395
                          + GR VH+ +     +   +V +ALI MY +CGD+  A+ +F   
Sbjct: 257 TAVCVLSACSDLGALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRVFRVM 316

Query: 396 PLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGR 455
             KDV+ +N+MI+G + HG   EA+N FRDM   G  P+ ++ + +L+ACS+ G +  G 
Sbjct: 317 RDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGL 376

Query: 456 EIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRT 515
           E+F SMK  + VEP IEHY C+VDLLGR G++ +A   +E +P+EPD I+ G+LL AC+ 
Sbjct: 377 EVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHIMLGTLLSACKI 436

Query: 516 HMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYS 575
           H  ++L E   ++L + E  ++G YVLLS++YAS G+W++   +RE ++   + K PG S
Sbjct: 437 HGNMELGEKIAKRLFESENPDSGTYVLLSNLYASSGKWKESTEIRESMRDSGIEKEPGCS 496

Query: 576 WIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLR 612
            IEV+ + H F+ GD   HP +  I + L+ L+ +LR
Sbjct: 497 TIEVDNQIHEFLVGD-IAHPHKEAIYQRLQELNRILR 532



 Score =  100 bits (249), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 102/419 (24%), Positives = 181/419 (43%), Gaps = 22/419 (5%)

Query: 70  AVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNV 129
           A  +F      N+  +  M+ GFV +G  A+   ++  M   +V+    ++   ++  ++
Sbjct: 80  AYDVFSYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKACDL 139

Query: 130 E-----EAERLFWRMPEKNVVSWTVM-LGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIG 183
           +      A+ L         V   +M + G  K   + +A+K+FD MP +D VA T MI 
Sbjct: 140 KVCREIHAQVLKLGFGSSRSVGLKMMEIYG--KSGELVNAKKMFDEMPDRDHVAATVMIN 197

Query: 184 GYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMP----ERNEVS 239
            Y E G ++EA  LF ++  ++ V WT M+ G  RN+ ++ A +LF  M       NE +
Sbjct: 198 CYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFT 257

Query: 240 WTAML-----MGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKM 294
              +L     +G    GR   +      M +   V  N +I  +   GD++ A+ VF  M
Sbjct: 258 AVCVLSACSDLGALELGRWVHSFVENQRMELSNFVG-NALINMYSRCGDINEARRVFRVM 316

Query: 295 RERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGR 354
           R++D  +++ MI      G  +EA+  F  M   G   N                 D G 
Sbjct: 317 RDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGL 376

Query: 355 QVHARLVRS-EFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLK-DVVMWNSMITGYSQ 412
           +V   + R    +  +     ++ +  + G L  A       P++ D +M  ++++    
Sbjct: 377 EVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHIMLGTLLSACKI 436

Query: 413 HGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMK-CKYQVEPG 470
           HG  E    + + +      PD  +++ + +  + SGK KE  EI ESM+    + EPG
Sbjct: 437 HGNMELGEKIAKRL-FESENPDSGTYVLLSNLYASSGKWKESTEIRESMRDSGIEKEPG 494



 Score = 87.4 bits (215), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 140/309 (45%), Gaps = 27/309 (8%)

Query: 28  YARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNG 87
           Y + G++ NA+K+FDE P   R   +   M+  Y +     +A+ LF+    K+ V W  
Sbjct: 168 YGKSGELVNAKKMFDEMP--DRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTA 225

Query: 88  MVSGFVKNGMVAEARRVFDAMPVRNVVS--WTSM-VRGYVQEGNVEEAERLFWRMPEKNV 144
           M+ G V+N  + +A  +F  M + NV +  +T++ V     +    E  R      E   
Sbjct: 226 MIDGLVRNKEMNKALELFREMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQR 285

Query: 145 VSWTVMLGGLLKD--SR---VEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFD 199
           +  +  +G  L +  SR   + +AR++F +M  KDV++   MI G    G   EA   F 
Sbjct: 286 MELSNFVGNALINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFR 345

Query: 200 EMPKR----NVVTWTTMVSGYARNRRVDVA-------RKLFEVMPERNEVSWTAMLMGYT 248
           +M  R    N VT   +++  +    +D+        +++F V P+         L+G  
Sbjct: 346 DMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGRV 405

Query: 249 HSGRMREASEFFDAMPVKPV-VACNEMIMGFGFDGDVDRAKAVFEKMRER---DDGTWSA 304
             GR+ EA  F + +P++P  +    ++      G+++  + + +++ E    D GT+  
Sbjct: 406 --GRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGNMELGEKIAKRLFESENPDSGTYVL 463

Query: 305 MIKVYERKG 313
           +  +Y   G
Sbjct: 464 LSNLYASSG 472



 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 75/148 (50%), Gaps = 7/148 (4%)

Query: 352 HGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYS 411
           H   +HA+++R+  DQD +V   LI +      +  A  +F+     +V ++ +MI G+ 
Sbjct: 44  HVPSIHAKIIRTFHDQDAFVVFELIRVCSTLDSVDYAYDVFSYVSNPNVYLYTAMIDGFV 103

Query: 412 QHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIF-ESMKCKYQVEPG 470
             G   + ++++  M  + V PD+     VL AC     +K  REI  + +K  +     
Sbjct: 104 SSGRSADGVSLYHRMIHNSVLPDNYVITSVLKACD----LKVCREIHAQVLKLGFGSSRS 159

Query: 471 IEHYACMVDLLGRAGQVNDAVEIVEKMP 498
           +     M+++ G++G++ +A ++ ++MP
Sbjct: 160 VGLK--MMEIYGKSGELVNAKKMFDEMP 185


>AT2G03380.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:1028292-1030361 FORWARD
           LENGTH=689
          Length = 689

 Score =  266 bits (679), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 176/615 (28%), Positives = 287/615 (46%), Gaps = 61/615 (9%)

Query: 21  STGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEK 80
           +T  +S Y   G  ++AR VFD+ P        W  M+  Y    +  + V L++   + 
Sbjct: 79  ATKLVSLYGFFGYTKDARLVFDQIPEPDFYL--WKVMLRCYCLNKESVEVVKLYDLLMKH 136

Query: 81  NIVSWNGMVSGFVK---------NGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEE 131
                + + S  +K         NG     + V   +P  + V  T ++  Y + G ++ 
Sbjct: 137 GFRYDDIVFSKALKACTELQDLDNGKKIHCQLV--KVPSFDNVVLTGLLDMYAKCGEIKS 194

Query: 132 AERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVA----VTNMIGGYCE 187
           A ++F  +  +NVV WT M+ G +K+   E+   LF+ M   +V+        +I    +
Sbjct: 195 AHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTK 254

Query: 188 EGRLEEARALFDEMPKRNV----VTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAM 243
              L + +     + K  +       T+++  Y +   +  AR++F      + V WTAM
Sbjct: 255 LSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAM 314

Query: 244 LMGYTHSGRMREASEFFDAMP---VKP-VVACNEMIMGFGF------------------- 280
           ++GYTH+G + EA   F  M    +KP  V    ++ G G                    
Sbjct: 315 IVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGI 374

Query: 281 -DGDVDRA--------------KAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARM 325
            D +V  A              K VFE   E+D   W+++I  + + G   EAL LF RM
Sbjct: 375 WDTNVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRM 434

Query: 326 QREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEF--DQDLYVASALITMYVKCG 383
             E    N                   G  +HA  V+  F     ++V +AL+  Y KCG
Sbjct: 435 NSESVTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCG 494

Query: 384 DLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLS 443
           D   A+ IF+    K+ + W++MI GY + G    +L +F +M      P++ +F  +LS
Sbjct: 495 DPQSARLIFDTIEEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILS 554

Query: 444 ACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDA 503
           AC ++G V EG++ F SM   Y   P  +HY CMVD+L RAG++  A++I+EKMP++PD 
Sbjct: 555 ACGHTGMVNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDV 614

Query: 504 IVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKI 563
             +G+ L  C  H + DL E+ ++K+  L P +A  YVL+S++YAS GRW   + VR  +
Sbjct: 615 RCFGAFLHGCGMHSRFDLGEIVIKKMLDLHPDDASYYVLVSNLYASDGRWNQAKEVRNLM 674

Query: 564 KTRSVIKLPGYSWIE 578
           K R + K+ G+S +E
Sbjct: 675 KQRGLSKIAGHSTME 689



 Score =  118 bits (296), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 154/347 (44%), Gaps = 16/347 (4%)

Query: 174 DVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMP 233
           D+   T ++  Y   G  ++AR +FD++P+ +   W  M+  Y  N+      KL++++ 
Sbjct: 75  DISIATKLVSLYGFFGYTKDARLVFDQIPEPDFYLWKVMLRCYCLNKESVEVVKLYDLLM 134

Query: 234 ER----NEVSWTAMLMGYTHSGRMREASEF---FDAMPVKPVVACNEMIMGFGFDGDVDR 286
           +     +++ ++  L   T    +    +       +P    V    ++  +   G++  
Sbjct: 135 KHGFRYDDIVFSKALKACTELQDLDNGKKIHCQLVKVPSFDNVVLTGLLDMYAKCGEIKS 194

Query: 287 AKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXX 346
           A  VF  +  R+   W++MI  Y +     E L LF RM+      N             
Sbjct: 195 AHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTK 254

Query: 347 XXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSM 406
                 G+  H  LV+S  +    + ++L+ MYVKCGD+  A+ +FN +   D+VMW +M
Sbjct: 255 LSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAM 314

Query: 407 ITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQ 466
           I GY+ +G   EAL++F+ M    + P+ ++   VLS C     ++ GR +         
Sbjct: 315 IVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVH-----GLS 369

Query: 467 VEPGI---EHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLL 510
           ++ GI        +V +  +  Q  DA  + E M  E D + W S++
Sbjct: 370 IKVGIWDTNVANALVHMYAKCYQNRDAKYVFE-MESEKDIVAWNSII 415



 Score =  110 bits (274), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 152/351 (43%), Gaps = 66/351 (18%)

Query: 11  CMVQVRFQ---CTSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQP 67
           C+V+   +   C  T  +  Y + G I NAR+VF+E  H H     W AM+  Y      
Sbjct: 267 CLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNE--HSHVDLVMWTAMIVGYTHNGSV 324

Query: 68  HQAVTLFETTP----EKNIVSWNGMVSGF-------------------------VKNGMV 98
           ++A++LF+       + N V+   ++SG                          V N +V
Sbjct: 325 NEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGIWDTNVANALV 384

Query: 99  A---------EARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVV---- 145
                     +A+ VF+    +++V+W S++ G+ Q G++ EA  LF RM  ++V     
Sbjct: 385 HMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGV 444

Query: 146 ------SWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFD 199
                 S    LG L   S +         +    V   T ++  Y + G  + AR +FD
Sbjct: 445 TVASLFSACASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFD 504

Query: 200 EMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMRE 255
            + ++N +TW+ M+ GY +      + +LFE M ++    NE ++T++L    H+G + E
Sbjct: 505 TIEEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILSACGHTGMVNE 564

Query: 256 ASEFFDAM-------PVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDD 299
             ++F +M       P      C  M+      G++++A  + EKM  + D
Sbjct: 565 GKKYFSSMYKDYNFTPSTKHYTC--MVDMLARAGELEQALDIIEKMPIQPD 613



 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/213 (19%), Positives = 92/213 (43%), Gaps = 10/213 (4%)

Query: 326 QREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDL 385
           + +G++L++                D  RQ H  L  +    D+ +A+ L+++Y   G  
Sbjct: 33  ENDGSSLHYAASSPCFLLLSKCTNIDSLRQSHGVLTGNGLMGDISIATKLVSLYGFFGYT 92

Query: 386 VRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSAC 445
             A+ +F++ P  D  +W  M+  Y  +    E + ++  +   G   DDI F   L AC
Sbjct: 93  KDARLVFDQIPEPDFYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKAC 152

Query: 446 SYSGKVKEGREIFESMKCKYQVEPGIEHYAC--MVDLLGRAGQVNDAVEIVEKMPMEPDA 503
           +    +  G++I     C+    P  ++     ++D+  + G++  A ++   + +  + 
Sbjct: 153 TELQDLDNGKKI----HCQLVKVPSFDNVVLTGLLDMYAKCGEIKSAHKVFNDITLR-NV 207

Query: 504 IVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKN 536
           + W S++     ++K DL E  +    ++   N
Sbjct: 208 VCWTSMIAG---YVKNDLCEEGLVLFNRMRENN 237


>AT5G15300.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:4968384-4970030 REVERSE
           LENGTH=548
          Length = 548

 Score =  264 bits (674), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 157/460 (34%), Positives = 246/460 (53%), Gaps = 45/460 (9%)

Query: 163 ARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNV---------------- 206
           A KLFD +P  DV    +++ G  +  + E+  +L+ EM KR V                
Sbjct: 65  AHKLFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSK 124

Query: 207 VTWTT--------------MVSGYARNRRV---------DVARKLFEVMPERNEVSWTAM 243
           + W +              +++ Y +N  +          +A +LF+   + ++V+W++M
Sbjct: 125 LEWRSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSM 184

Query: 244 LMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWS 303
             GY   G++ EA   FD MP K  VA N MI G     ++D A+ +F++  E+D  TW+
Sbjct: 185 TSGYAKRGKIDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWN 244

Query: 304 AMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRS 363
           AMI  Y   G+  EALG+F  M+  G   +                 + G+++H  ++ +
Sbjct: 245 AMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILET 304

Query: 364 -EFDQDLYVAS----ALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEE 418
                 +YV +    ALI MY KCG + RA  +F     +D+  WN++I G + H   E 
Sbjct: 305 ASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALHH-AEG 363

Query: 419 ALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMV 478
           ++ +F +M    V P++++FIGV+ ACS+SG+V EGR+ F  M+  Y +EP I+HY CMV
Sbjct: 364 SIEMFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMV 423

Query: 479 DLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAG 538
           D+LGRAGQ+ +A   VE M +EP+AIVW +LLGAC+ +  ++L + A EKL  +    +G
Sbjct: 424 DMLGRAGQLEEAFMFVESMKIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESG 483

Query: 539 PYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIE 578
            YVLLS++YAS G+W+ V+ VR+      V K  G S IE
Sbjct: 484 DYVLLSNIYASTGQWDGVQKVRKMFDDTRVKKPTGVSLIE 523



 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 128/512 (25%), Positives = 204/512 (39%), Gaps = 110/512 (21%)

Query: 32  GQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFE------TTPEK----- 80
           G ++ A K+FDE P      S  N ++    Q+ +P + V+L+        +P++     
Sbjct: 60  GALKYAHKLFDEIPK--PDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTF 117

Query: 81  ------------NIVSWNGMV--SGFVKN--------------GMVAEARRVFDAMPVRN 112
                       N  +++G V   GFV N              G +  A  +FD     +
Sbjct: 118 VLKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAH 177

Query: 113 VVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPV 172
            V+W+SM  GY + G ++EA RLF  MP K+ V+W VM+ G LK   ++ AR+LFD    
Sbjct: 178 KVAWSSMTSGYAKRGKIDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTE 237

Query: 173 KDVVAVTNMIGGYCEEGRLEEARALFDEM----PKRNVVTWTTMVSGYARNRRVDVARKL 228
           KDVV    MI GY   G  +EA  +F EM       +VVT  +++S  A    ++  ++L
Sbjct: 238 KDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRL 297

Query: 229 FEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAK 288
              + E   VS                 S  +   P+      N +I  +   G +DRA 
Sbjct: 298 HIYILETASVS-----------------SSIYVGTPI-----WNALIDMYAKCGSIDRAI 335

Query: 289 AVFEKMRERDDGTWSAMI---KVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXX 345
            VF  +++RD  TW+ +I    ++  +G    ++ +F  MQR     N            
Sbjct: 336 EVFRGVKDRDLSTWNTLIVGLALHHAEG----SIEMFEEMQRLKVWPNEVTFIGVILACS 391

Query: 346 XXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNS 405
                D GR+  + +      +D+Y     I  Y                          
Sbjct: 392 HSGRVDEGRKYFSLM------RDMYNIEPNIKHY------------------------GC 421

Query: 406 MITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKY 465
           M+    + G  EEA      M    + P+ I +  +L AC   G V+ G+   E +    
Sbjct: 422 MVDMLGRAGQLEEAFMFVESM---KIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMR 478

Query: 466 QVEPGIEHYACMVDLLGRAGQVNDAVEIVEKM 497
           + E G   Y  + ++    GQ  D V+ V KM
Sbjct: 479 KDESG--DYVLLSNIYASTGQW-DGVQKVRKM 507



 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 130/253 (51%), Gaps = 20/253 (7%)

Query: 28  YARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNG 87
           +A  G +  A ++FD++   H+   +W++M + Y +  +  +A+ LF+  P K+ V+WN 
Sbjct: 157 HANCGDLGIASELFDDSAKAHKV--AWSSMTSGYAKRGKIDEAMRLFDEMPYKDQVAWNV 214

Query: 88  MVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEK----N 143
           M++G +K   +  AR +FD    ++VV+W +M+ GYV  G  +EA  +F  M +     +
Sbjct: 215 MITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPD 274

Query: 144 VVSWTVMLGGLLKDSRVEDARKL----FDMMPVKDVVAV-----TNMIGGYCEEGRLEEA 194
           VV+   +L        +E  ++L     +   V   + V       +I  Y + G ++ A
Sbjct: 275 VVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRA 334

Query: 195 RALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHS 250
             +F  +  R++ TW T++ G A +   + + ++FE M       NEV++  +++  +HS
Sbjct: 335 IEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQRLKVWPNEVTFIGVILACSHS 393

Query: 251 GRMREASEFFDAM 263
           GR+ E  ++F  M
Sbjct: 394 GRVDEGRKYFSLM 406



 Score = 97.4 bits (241), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 148/317 (46%), Gaps = 35/317 (11%)

Query: 26  SRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVSW 85
           S YA+ G+I+ A ++FDE P  ++   +WN M+    +  +   A  LF+   EK++V+W
Sbjct: 186 SGYAKRGKIDEAMRLFDEMP--YKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTW 243

Query: 86  NGMVSGFVKNGMVAEARRVF----DAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPE 141
           N M+SG+V  G   EA  +F    DA    +VV+  S++      G++E  +RL   + E
Sbjct: 244 NAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILE 303

Query: 142 KNVVS---------WTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYC---EEG 189
              VS         W  ++    K   ++ A ++F  +  +D+     +I G      EG
Sbjct: 304 TASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALHHAEG 363

Query: 190 RLEEARALFDEMPKRNV----VTWTTMVSGYARNRRVDVARKLFEVMP-----ERNEVSW 240
            +E    +F+EM +  V    VT+  ++   + + RVD  RK F +M      E N   +
Sbjct: 364 SIE----MFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHY 419

Query: 241 TAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMG-FGFDGDVDRAKAVFEK---MRE 296
             M+     +G++ EA  F ++M ++P       ++G     G+V+  K   EK   MR+
Sbjct: 420 GCMVDMLGRAGQLEEAFMFVESMKIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRK 479

Query: 297 RDDGTWSAMIKVYERKG 313
            + G +  +  +Y   G
Sbjct: 480 DESGDYVLLSNIYASTG 496


>AT2G34400.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr2:14516226-14518186 FORWARD
           LENGTH=621
          Length = 621

 Score =  264 bits (674), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 167/525 (31%), Positives = 272/525 (51%), Gaps = 23/525 (4%)

Query: 86  NGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAE-RLFWRM----- 139
           N ++   V+ G    +  +F      N  S+  M+RG     N  EA   L+ RM     
Sbjct: 69  NFLIPKAVELGDFNYSSFLFSVTEEPNHYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGL 128

Query: 140 -PEKNVVSWTVMLGGLLKDSRVEDA--RKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARA 196
            P+K   ++  +    L++  V  +    LF +   +DV    ++I  Y + G++  AR 
Sbjct: 129 KPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARK 188

Query: 197 LFDEMPKRNVVTWTTMVSGYAR----NRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGR 252
           LFDE+ +R+ V+W +M+SGY+        +D+ RK+ E   E +E +  +ML   +H G 
Sbjct: 189 LFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGD 248

Query: 253 MREASEFFDAMPVKPVVACN-----EMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIK 307
           +R      + M +   +  +     ++I  +G  GD+D A+ VF +M ++D   W+AMI 
Sbjct: 249 LR-TGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMIT 307

Query: 308 VYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQ 367
           VY + G   EA  LF  M++ G + +                 + G+Q+           
Sbjct: 308 VYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQH 367

Query: 368 DLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMC 427
           ++YVA+ L+ MY KCG +  A  +F   P+K+   WN+MIT Y+  G  +EAL +F  M 
Sbjct: 368 NIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRM- 426

Query: 428 LSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQV 487
              VPP DI+FIGVLSAC ++G V +G   F  M   + + P IEHY  ++DLL RAG +
Sbjct: 427 --SVPPSDITFIGVLSACVHAGLVHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGML 484

Query: 488 NDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQL-EPKNAGPYVLLSHM 546
           ++A E +E+ P +PD I+  ++LGAC     + + E A+  L ++ E KNAG YV+ S++
Sbjct: 485 DEAWEFMERFPGKPDEIMLAAILGACHKRKDVAIREKAMRMLMEMKEAKNAGNYVISSNV 544

Query: 547 YASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDN 591
            A    W++   +R  ++ R V+K PG SWIE+E +   F+ G +
Sbjct: 545 LADMKMWDESAKMRALMRDRGVVKTPGCSWIEIEGELMEFLAGSD 589



 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 140/284 (49%), Gaps = 26/284 (9%)

Query: 72  TLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEE 131
           +LF+   E+++   + ++  + K G V  AR++FD +  R+ VSW SM+ GY + G  ++
Sbjct: 157 SLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKD 216

Query: 132 AERLFWRMPEKNVV----SWTVMLGGLLKDSRVEDAR--KLFDMMPVKDVVAVTNMIGG- 184
           A  LF +M E+       +   MLG     S + D R  +L + M +   + ++  +G  
Sbjct: 217 AMDLFRKMEEEGFEPDERTLVSMLGAC---SHLGDLRTGRLLEEMAITKKIGLSTFLGSK 273

Query: 185 ----YCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSW 240
               Y + G L+ AR +F++M K++ V WT M++ Y++N +   A KLF  M E+  VS 
Sbjct: 274 LISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEM-EKTGVSP 332

Query: 241 TAMLM----------GYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAV 290
            A  +          G    G+  E      ++     VA   + M +G  G V+ A  V
Sbjct: 333 DAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDM-YGKCGRVEEALRV 391

Query: 291 FEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNF 334
           FE M  +++ TW+AMI  Y  +G   EAL LF RM    + + F
Sbjct: 392 FEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRMSVPPSDITF 435



 Score =  102 bits (254), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 127/289 (43%), Gaps = 54/289 (18%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTP------ 78
           I  YA+ GQ+  ARK+FDE     R T SWN+M++ Y +A     A+ LF          
Sbjct: 174 IMMYAKCGQVGYARKLFDEITE--RDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEP 231

Query: 79  -EKNIVSWNG--------------------------------MVSGFVKNGMVAEARRVF 105
            E+ +VS  G                                ++S + K G +  ARRVF
Sbjct: 232 DERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVF 291

Query: 106 DAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPE----------KNVVSWTVMLGGLL 155
           + M  ++ V+WT+M+  Y Q G   EA +LF+ M +            V+S    +G L 
Sbjct: 292 NQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALE 351

Query: 156 KDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSG 215
              ++E       +    ++   T ++  Y + GR+EEA  +F+ MP +N  TW  M++ 
Sbjct: 352 LGKQIETHASELSLQ--HNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAMITA 409

Query: 216 YARNRRVDVARKLFEVMP-ERNEVSWTAMLMGYTHSGRMREASEFFDAM 263
           YA       A  LF+ M    +++++  +L    H+G + +   +F  M
Sbjct: 410 YAHQGHAKEALLLFDRMSVPPSDITFIGVLSACVHAGLVHQGCRYFHEM 458



 Score = 97.1 bits (240), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 109/261 (41%), Gaps = 49/261 (18%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVV 114
           ++++  Y +  Q   A  LF+   E++ VSWN M+SG+ + G   +A  +F  M      
Sbjct: 171 HSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFE 230

Query: 115 ----SWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLL-----KDSRVEDARK 165
               +  SM+      G++    RL   M     +  +  LG  L     K   ++ AR+
Sbjct: 231 PDERTLVSMLGACSHLGDLRTG-RLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARR 289

Query: 166 LFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPK---------------------- 203
           +F+ M  KD VA T MI  Y + G+  EA  LF EM K                      
Sbjct: 290 VFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGA 349

Query: 204 -----------------RNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMG 246
                             N+   T +V  Y +  RV+ A ++FE MP +NE +W AM+  
Sbjct: 350 LELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAMITA 409

Query: 247 YTHSGRMREASEFFDAMPVKP 267
           Y H G  +EA   FD M V P
Sbjct: 410 YAHQGHAKEALLLFDRMSVPP 430



 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 113/265 (42%), Gaps = 58/265 (21%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLF---------- 74
           IS Y + G +++AR+VF++   I +   +W AM+  Y Q  +  +A  LF          
Sbjct: 275 ISMYGKCGDLDSARRVFNQM--IKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSP 332

Query: 75  -----------------------------ETTPEKNIVSWNGMVSGFVKNGMVAEARRVF 105
                                        E + + NI    G+V  + K G V EA RVF
Sbjct: 333 DAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVF 392

Query: 106 DAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM--PEKN-----VVSWTVMLGGLLKDS 158
           +AMPV+N  +W +M+  Y  +G+ +EA  LF RM  P  +     V+S  V  G + +  
Sbjct: 393 EAMPVKNEATWNAMITAYAHQGHAKEALLLFDRMSVPPSDITFIGVLSACVHAGLVHQGC 452

Query: 159 R-VEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYA 217
           R   +   +F ++P   +   TN+I      G L+EA    +  P +        + G A
Sbjct: 453 RYFHEMSSMFGLVP--KIEHYTNIIDLLSRAGMLDEAWEFMERFPGKPDEIMLAAILG-A 509

Query: 218 RNRRVDVA------RKLFEVMPERN 236
            ++R DVA      R L E+   +N
Sbjct: 510 CHKRKDVAIREKAMRMLMEMKEAKN 534



 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 111/241 (46%), Gaps = 20/241 (8%)

Query: 44  TPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARR 103
           T  I  +T   + +++ Y +      A  +F    +K+ V+W  M++ + +NG  +EA +
Sbjct: 261 TKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFK 320

Query: 104 VFDAMPVRNVV----SWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLL---- 155
           +F  M    V     + ++++      G +E  +++     E ++     +  GL+    
Sbjct: 321 LFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYG 380

Query: 156 KDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEM--PKRNVVTWTTMV 213
           K  RVE+A ++F+ MPVK+      MI  Y  +G  +EA  LFD M  P  + +T+  ++
Sbjct: 381 KCGRVEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRMSVPPSD-ITFIGVL 439

Query: 214 SG-------YARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVK 266
           S        +   R       +F ++P+     +T ++   + +G + EA EF +  P K
Sbjct: 440 SACVHAGLVHQGCRYFHEMSSMFGLVPKIEH--YTNIIDLLSRAGMLDEAWEFMERFPGK 497

Query: 267 P 267
           P
Sbjct: 498 P 498



 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 80/160 (50%), Gaps = 15/160 (9%)

Query: 21  STGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPH--QAVTLFE--T 76
           +TG +  Y + G++E A +VF+  P   +  ++WNAM+ AY  AHQ H  +A+ LF+  +
Sbjct: 372 ATGLVDMYGKCGRVEEALRVFEAMP--VKNEATWNAMITAY--AHQGHAKEALLLFDRMS 427

Query: 77  TPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMP-----VRNVVSWTSMVRGYVQEGNVEE 131
            P  +I ++ G++S  V  G+V +  R F  M      V  +  +T+++    + G ++E
Sbjct: 428 VPPSDI-TFIGVLSACVHAGLVHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLDE 486

Query: 132 AERLFWRMPEK-NVVSWTVMLGGLLKDSRVEDARKLFDMM 170
           A     R P K + +    +LG   K   V    K   M+
Sbjct: 487 AWEFMERFPGKPDEIMLAAILGACHKRKDVAIREKAMRML 526


>AT5G59600.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:24011315-24012919 REVERSE
           LENGTH=534
          Length = 534

 Score =  264 bits (674), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 157/504 (31%), Positives = 262/504 (51%), Gaps = 39/504 (7%)

Query: 88  MVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSW 147
           +V+ +V+ G V +AR+VFD MP R++     M+    + G  +E+   F  M +  +   
Sbjct: 57  LVTFYVECGKVLDARKVFDEMPKRDISGCVVMIGACARNGYYQESLDFFREMYKDGLKLD 116

Query: 148 TVMLGGLLKDSRVEDARKLFDMMPV--------KDVVAVTNMIGGYCEEGRLEEARALFD 199
             ++  LLK SR    R+   M+           D   V+++I  Y + G +  AR +F 
Sbjct: 117 AFIVPSLLKASRNLLDREFGKMIHCLVLKFSYESDAFIVSSLIDMYSKFGEVGNARKVFS 176

Query: 200 EMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMP----ERNEVSWTAMLMGYTHSGRMRE 255
           ++ ++++V +  M+SGYA N + D A  L + M     + + ++W A++ G++H     +
Sbjct: 177 DLGEQDLVVFNAMISGYANNSQADEALNLVKDMKLLGIKPDVITWNALISGFSHMRNEEK 236

Query: 256 ASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFE 315
            SE  + M +             G+  DV                +W+++I         
Sbjct: 237 VSEILELMCLD------------GYKPDVV---------------SWTSIISGLVHNFQN 269

Query: 316 LEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASAL 375
            +A   F +M   G   N                  HG+++H   V +  +   +V SAL
Sbjct: 270 EKAFDAFKQMLTHGLYPNSATIITLLPACTTLAYMKHGKEIHGYSVVTGLEDHGFVRSAL 329

Query: 376 ITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDD 435
           + MY KCG +  A  +F + P K  V +NSMI  Y+ HGL ++A+ +F  M  +G   D 
Sbjct: 330 LDMYGKCGFISEAMILFRKTPKKTTVTFNSMIFCYANHGLADKAVELFDQMEATGEKLDH 389

Query: 436 ISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVE 495
           ++F  +L+ACS++G    G+ +F  M+ KY++ P +EHYACMVDLLGRAG++ +A E+++
Sbjct: 390 LTFTAILTACSHAGLTDLGQNLFLLMQNKYRIVPRLEHYACMVDLLGRAGKLVEAYEMIK 449

Query: 496 KMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWED 555
            M MEPD  VWG+LL ACR H  ++LA +A + LA+LEP+N+G  +LL+ +YA+ G WE 
Sbjct: 450 AMRMEPDLFVWGALLAACRNHGNMELARIAAKHLAELEPENSGNGLLLTSLYANAGSWES 509

Query: 556 VEVVREKIKTRSVIKLPGYSWIEV 579
           V  +++ IK +   +  G SW+E 
Sbjct: 510 VVRMKKMIKKKRFRRFLGSSWVET 533



 Score = 74.3 bits (181), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 83/365 (22%), Positives = 143/365 (39%), Gaps = 65/365 (17%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAA-----YFQ---------------- 63
           ++ Y   G++ +ARKVFDE P   R  S    M+ A     Y+Q                
Sbjct: 58  VTFYVECGKVLDARKVFDEMP--KRDISGCVVMIGACARNGYYQESLDFFREMYKDGLKL 115

Query: 64  --------------------AHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARR 103
                                   H  V  F    +  IVS   ++  + K G V  AR+
Sbjct: 116 DAFIVPSLLKASRNLLDREFGKMIHCLVLKFSYESDAFIVS--SLIDMYSKFGEVGNARK 173

Query: 104 VFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMP----EKNVVSWTVMLGGLLKDSR 159
           VF  +  +++V + +M+ GY      +EA  L   M     + +V++W  ++ G      
Sbjct: 174 VFSDLGEQDLVVFNAMISGYANNSQADEALNLVKDMKLLGIKPDVITWNALISGFSHMRN 233

Query: 160 VEDARKLFDMMPVK----DVVAVTNMIGGYCEEGRLEEARALFDEMPKR----NVVTWTT 211
            E   ++ ++M +     DVV+ T++I G     + E+A   F +M       N  T  T
Sbjct: 234 EEKVSEILELMCLDGYKPDVVSWTSIISGLVHNFQNEKAFDAFKQMLTHGLYPNSATIIT 293

Query: 212 MVSGYARNRRVDVARKL--FEVMP--ERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKP 267
           ++        +   +++  + V+   E +    +A+L  Y   G + EA   F   P K 
Sbjct: 294 LLPACTTLAYMKHGKEIHGYSVVTGLEDHGFVRSALLDMYGKCGFISEAMILFRKTPKKT 353

Query: 268 VVACNEMIMGFGFDGDVDRAKAVFEKM----RERDDGTWSAMIKVYERKGFELEALGLFA 323
            V  N MI  +   G  D+A  +F++M     + D  T++A++      G       LF 
Sbjct: 354 TVTFNSMIFCYANHGLADKAVELFDQMEATGEKLDHLTFTAILTACSHAGLTDLGQNLFL 413

Query: 324 RMQRE 328
            MQ +
Sbjct: 414 LMQNK 418



 Score = 66.2 bits (160), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 95/184 (51%), Gaps = 4/184 (2%)

Query: 353 GRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQ 412
           GR +HA LV S   +   +A+ L+T YV+CG ++ A+ +F+  P +D+     MI   ++
Sbjct: 35  GRVLHAHLVTSGIARLTRIAAKLVTFYVECGKVLDARKVFDEMPKRDISGCVVMIGACAR 94

Query: 413 HGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIE 472
           +G  +E+L+ FR+M   G+  D      +L A S +   +E  ++   +  K+  E    
Sbjct: 95  NGYYQESLDFFREMYKDGLKLDAFIVPSLLKA-SRNLLDREFGKMIHCLVLKFSYESDAF 153

Query: 473 HYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVE--KLA 530
             + ++D+  + G+V +A ++   +  E D +V+ +++     + + D A   V+  KL 
Sbjct: 154 IVSSLIDMYSKFGEVGNARKVFSDLG-EQDLVVFNAMISGYANNSQADEALNLVKDMKLL 212

Query: 531 QLEP 534
            ++P
Sbjct: 213 GIKP 216


>AT2G20540.1 | Symbols: MEF21 | mitochondrial editing factor  21 |
           chr2:8844160-8845764 FORWARD LENGTH=534
          Length = 534

 Score =  263 bits (673), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 156/449 (34%), Positives = 248/449 (55%), Gaps = 18/449 (4%)

Query: 159 RVED---ARKLFDMMPVKDVVAVTNMIGGY------CEEGRL--EEARALFDEMPKRNVV 207
           ++ED   A +LF+ +   +V    ++I  Y      C+  R+  +  R  F E+P R   
Sbjct: 54  KIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSF-ELPDR--F 110

Query: 208 TWTTMVSGYARNRRVDVARK----LFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAM 263
           T+  M    A      + ++    L +  P  + V+  A++  Y     + +A + FD M
Sbjct: 111 TFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEM 170

Query: 264 PVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFA 323
             + V++ N ++ G+   G + +AK +F  M ++   +W+AMI  Y   G  +EA+  F 
Sbjct: 171 YERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFR 230

Query: 324 RMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCG 383
            MQ  G   +                 + G+ +H    R  F +   V +ALI MY KCG
Sbjct: 231 EMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCG 290

Query: 384 DLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLS 443
            + +A  +F +   KDV+ W++MI+GY+ HG    A+  F +M  + V P+ I+F+G+LS
Sbjct: 291 VISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLS 350

Query: 444 ACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDA 503
           ACS+ G  +EG   F+ M+  YQ+EP IEHY C++D+L RAG++  AVEI + MPM+PD+
Sbjct: 351 ACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDS 410

Query: 504 IVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKI 563
            +WGSLL +CRT   LD+A VA++ L +LEP++ G YVLL+++YA  G+WEDV  +R+ I
Sbjct: 411 KIWGSLLSSCRTPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMI 470

Query: 564 KTRSVIKLPGYSWIEVEKKAHMFVGGDNN 592
           +  ++ K PG S IEV      FV GDN+
Sbjct: 471 RNENMKKTPGGSLIEVNNIVQEFVSGDNS 499



 Score = 91.7 bits (226), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 111/231 (48%), Gaps = 14/231 (6%)

Query: 45  PHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRV 104
           P  H  T   NA++  Y +      A  +F+   E++++SWN ++SG+ + G + +A+ +
Sbjct: 140 PRFHVVTE--NALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGL 197

Query: 105 FDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMP----EKNVVSWTVMLGGLLKDSRV 160
           F  M  + +VSWT+M+ GY   G   EA   F  M     E + +S   +L    +   +
Sbjct: 198 FHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSL 257

Query: 161 EDARKLFDMMP----VKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGY 216
           E  + +         +K       +I  Y + G + +A  LF +M  ++V++W+TM+SGY
Sbjct: 258 ELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGY 317

Query: 217 ARNRRVDVARKLFEVMP----ERNEVSWTAMLMGYTHSGRMREASEFFDAM 263
           A +     A + F  M     + N +++  +L   +H G  +E   +FD M
Sbjct: 318 AYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMM 368



 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 150/373 (40%), Gaps = 56/373 (15%)

Query: 101 ARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLF-------WRMPEKNVVSW----TV 149
           A R+F+ +   NV  + S++R Y       +  R++       + +P++    +      
Sbjct: 61  ATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCA 120

Query: 150 MLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTW 209
            LG      +V     L    P   VV    +I  Y +   L +A  +FDEM +R+V++W
Sbjct: 121 SLGSCYLGKQVHG--HLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISW 178

Query: 210 TTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMP----- 264
            +++SGYAR  ++  A+ LF +M ++  VSWTAM+ GYT  G   EA +FF  M      
Sbjct: 179 NSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIE 238

Query: 265 ----------------------------------VKPVVACNEMIMGFGFDGDVDRAKAV 290
                                             +K    CN +I  +   G + +A  +
Sbjct: 239 PDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQL 298

Query: 291 FEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXX 350
           F +M  +D  +WS MI  Y   G    A+  F  MQR     N                 
Sbjct: 299 FGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMW 358

Query: 351 DHGRQVHARLVRSEFDQDLYVA--SALITMYVKCGDLVRAKWIFNRYPLK-DVVMWNSMI 407
             G + +  ++R ++  +  +     LI +  + G L RA  I    P+K D  +W S++
Sbjct: 359 QEGLR-YFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLL 417

Query: 408 TGYSQHGLGEEAL 420
           +     G  + AL
Sbjct: 418 SSCRTPGNLDVAL 430



 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/160 (20%), Positives = 77/160 (48%), Gaps = 3/160 (1%)

Query: 354 RQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQH 413
           ++++A ++     Q  ++ + ++    K  D+  A  +FN+    +V ++NS+I  Y+ +
Sbjct: 27  KKINASIIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHN 86

Query: 414 GLGEEALNVFRDMCLSGVP-PDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIE 472
            L  + + +++ +       PD  +F  +  +C+  G    G+++   + CK+     + 
Sbjct: 87  SLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHL-CKFGPRFHVV 145

Query: 473 HYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGA 512
               ++D+  +   + DA ++ ++M  E D I W SLL  
Sbjct: 146 TENALIDMYMKFDDLVDAHKVFDEM-YERDVISWNSLLSG 184


>AT5G08490.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:2745208-2747757 REVERSE
           LENGTH=849
          Length = 849

 Score =  263 bits (671), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 183/690 (26%), Positives = 310/690 (44%), Gaps = 132/690 (19%)

Query: 47  IHRTTSSWNAMVAAY--FQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRV 104
           + + T   NA+V+ Y  F    P  A T F+   +K++VSWN +++GF +N M+A+A R 
Sbjct: 153 LEKDTLVGNALVSMYAKFGFIFP-DAYTAFDGIADKDVVSWNAIIAGFSENNMMADAFRS 211

Query: 105 F----------------DAMPV-----RNVV--------------SW--------TSMVR 121
           F                + +PV     +N+               SW         S+V 
Sbjct: 212 FCLMLKEPTEPNYATIANVLPVCASMDKNIACRSGRQIHSYVVQRSWLQTHVFVCNSLVS 271

Query: 122 GYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLF-------------- 167
            Y++ G +EEA  LF RM  K++VSW V++ G   +     A +LF              
Sbjct: 272 FYLRVGRIEEAASLFTRMGSKDLVSWNVVIAGYASNCEWFKAFQLFHNLVHKGDVSPDSV 331

Query: 168 ---DMMPV------------------------KDVVAVTNMIGGYCEEGRLEEARALFDE 200
               ++PV                        +D      +I  Y   G    A   F  
Sbjct: 332 TIISILPVCAQLTDLASGKEIHSYILRHSYLLEDTSVGNALISFYARFGDTSAAYWAFSL 391

Query: 201 MPKRNVVTWTTMVSGYARNRR--------------------------------VDVARKL 228
           M  +++++W  ++  +A + +                                V    K+
Sbjct: 392 MSTKDIISWNAILDAFADSPKQFQFLNLLHHLLNEAITLDSVTILSLLKFCINVQGIGKV 451

Query: 229 FEVM----------PERNEVSWTAMLMGYTHSGRMREASEFFDAMPVK-PVVACNEMIMG 277
            EV            E       A+L  Y   G +  A + F  +  +  +V+ N ++ G
Sbjct: 452 KEVHGYSVKAGLLHDEEEPKLGNALLDAYAKCGNVEYAHKIFLGLSERRTLVSYNSLLSG 511

Query: 278 FGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXX 337
           +   G  D A+ +F +M   D  TWS M+++Y       EA+G+F  +Q  G   N    
Sbjct: 512 YVNSGSHDDAQMLFTEMSTTDLTTWSLMVRIYAESCCPNEAIGVFREIQARGMRPNTVTI 571

Query: 338 XXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPL 397
                           RQ H  ++R     D+ +   L+ +Y KCG L  A  +F     
Sbjct: 572 MNLLPVCAQLASLHLVRQCHGYIIRGGLG-DIRLKGTLLDVYAKCGSLKHAYSVFQSDAR 630

Query: 398 KDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREI 457
           +D+VM+ +M+ GY+ HG G+EAL ++  M  S + PD +    +L+AC ++G +++G +I
Sbjct: 631 RDLVMFTAMVAGYAVHGRGKEALMIYSHMTESNIKPDHVFITTMLTACCHAGLIQDGLQI 690

Query: 458 FESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHM 517
           ++S++  + ++P +E YAC VDL+ R G+++DA   V +MP+EP+A +WG+LL AC T+ 
Sbjct: 691 YDSIRTVHGMKPTMEQYACAVDLIARGGRLDDAYSFVTQMPVEPNANIWGTLLRACTTYN 750

Query: 518 KLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWI 577
           ++DL       L Q E  + G +VL+S+MYA+  +WE V  +R  +K + + K  G SW+
Sbjct: 751 RMDLGHSVANHLLQAESDDTGNHVLISNMYAADAKWEGVMELRNLMKKKEMKKPAGCSWL 810

Query: 578 EVEKKAHMFVGGDNNCHPEQPIIMKMLERL 607
           EV+ + ++FV GD + HP +  I  ++  L
Sbjct: 811 EVDGQRNVFVSGDCS-HPRRDSIFDLVNAL 839



 Score = 87.0 bits (214), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 157/354 (44%), Gaps = 26/354 (7%)

Query: 177 AVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVM---- 232
           +V NM   Y +  R+++ + +F +M   + V W  +++G + +   +  R  F+ M    
Sbjct: 61  SVLNM---YAKCRRMDDCQKMFRQMDSLDPVVWNIVLTGLSVSCGRETMR-FFKAMHFAD 116

Query: 233 -PERNEVSWTAML-----MGYTHSGRMREASEFFDAMPVKPVV--ACNEMIMGFGFDGDV 284
            P+ + V++  +L     +G +++G+   +      +    +V  A   M   FGF    
Sbjct: 117 EPKPSSVTFAIVLPLCVRLGDSYNGKSMHSYIIKAGLEKDTLVGNALVSMYAKFGFI--F 174

Query: 285 DRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXX--- 341
             A   F+ + ++D  +W+A+I  +       +A   F  M +E    N+          
Sbjct: 175 PDAYTAFDGIADKDVVSWNAIIAGFSENNMMADAFRSFCLMLKEPTEPNYATIANVLPVC 234

Query: 342 XXXXXXXXXDHGRQVHARLV-RSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDV 400
                      GRQ+H+ +V RS     ++V ++L++ Y++ G +  A  +F R   KD+
Sbjct: 235 ASMDKNIACRSGRQIHSYVVQRSWLQTHVFVCNSLVSFYLRVGRIEEAASLFTRMGSKDL 294

Query: 401 VMWNSMITGYSQHGLGEEALNVFRDMCLSG-VPPDDISFIGVLSACSYSGKVKEGREIFE 459
           V WN +I GY+ +    +A  +F ++   G V PD ++ I +L  C+    +  G+EI  
Sbjct: 295 VSWNVVIAGYASNCEWFKAFQLFHNLVHKGDVSPDSVTIISILPVCAQLTDLASGKEIHS 354

Query: 460 S-MKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGA 512
             ++  Y +E      A ++    R G  + A      M  + D I W ++L A
Sbjct: 355 YILRHSYLLEDTSVGNA-LISFYARFGDTSAAYWAFSLMSTK-DIISWNAILDA 406



 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/299 (21%), Positives = 124/299 (41%), Gaps = 47/299 (15%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVS 84
           +  YA+ G +E A K+F       RT  S+N++++ Y  +     A  LF      ++ +
Sbjct: 477 LDAYAKCGNVEYAHKIFLGLSE-RRTLVSYNSLLSGYVNSGSHDDAQMLFTEMSTTDLTT 535

Query: 85  WNGMVSGFVKNGMVAEARRVFDAMPVR----NVVSWTSMVRGYVQEGNVEEAERLFWRMP 140
           W+ MV  + ++    EA  VF  +  R    N V+  +++    Q  ++    +      
Sbjct: 536 WSLMVRIYAESCCPNEAIGVFREIQARGMRPNTVTIMNLLPVCAQLASLHLVRQ------ 589

Query: 141 EKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDE 200
                   ++ GGL                   D+     ++  Y + G L+ A ++F  
Sbjct: 590 ----CHGYIIRGGL------------------GDIRLKGTLLDVYAKCGSLKHAYSVFQS 627

Query: 201 MPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERN----EVSWTAMLMGYTHSGRMREA 256
             +R++V +T MV+GYA + R   A  ++  M E N     V  T ML    H+G +++ 
Sbjct: 628 DARRDLVMFTAMVAGYAVHGRGKEALMIYSHMTESNIKPDHVFITTMLTACCHAGLIQDG 687

Query: 257 SEFFDAM-------PVKPVVACNEMIMGFGFDGDVDRAKAVFEKMR-ERDDGTWSAMIK 307
            + +D++       P     AC   ++  G  G +D A +   +M  E +   W  +++
Sbjct: 688 LQIYDSIRTVHGMKPTMEQYACAVDLIARG--GRLDDAYSFVTQMPVEPNANIWGTLLR 744


>AT4G20770.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:11130762-11133086 REVERSE
           LENGTH=774
          Length = 774

 Score =  262 bits (670), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 161/501 (32%), Positives = 259/501 (51%), Gaps = 37/501 (7%)

Query: 86  NGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEK--- 142
           N ++  + KN  +  A  +F  MP  NVVSW  M+ G+ QE   +++     RM +    
Sbjct: 288 NSLLEIYAKNKDMNGAELIFAEMPEVNVVSWNIMIVGFGQEYRSDKSVEFLTRMRDSGFQ 347

Query: 143 -NVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEM 201
            N V+   +LG   +   VE  R++F  +P   V A   M+ GY      EEA + F +M
Sbjct: 348 PNEVTCISVLGACFRSGDVETGRRIFSSIPQPSVSAWNAMLSGYSNYEHYEEAISNFRQM 407

Query: 202 PKRNV----VTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREAS 257
             +N+     T + ++S  AR R ++  +++  V+  R E+S  + ++    SG +   S
Sbjct: 408 QFQNLKPDKTTLSVILSSCARLRFLEGGKQIHGVVI-RTEISKNSHIV----SGLIAVYS 462

Query: 258 EFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEK-MRERDDGTWSAMIKVYERKGFEL 316
           E            C +M          + ++ +F+  + E D   W++MI  +     + 
Sbjct: 463 E------------CEKM----------EISECIFDDCINELDIACWNSMISGFRHNMLDT 500

Query: 317 EALGLFARMQREGAAL-NFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASAL 375
           +AL LF RM +      N                  HGRQ H  +V+S +  D +V +AL
Sbjct: 501 KALILFRRMHQTAVLCPNETSFATVLSSCSRLCSLLHGRQFHGLVVKSGYVSDSFVETAL 560

Query: 376 ITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDD 435
             MY KCG++  A+  F+    K+ V+WN MI GY  +G G+EA+ ++R M  SG  PD 
Sbjct: 561 TDMYCKCGEIDSARQFFDAVLRKNTVIWNEMIHGYGHNGRGDEAVGLYRKMISSGEKPDG 620

Query: 436 ISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVE 495
           I+F+ VL+ACS+SG V+ G EI  SM+  + +EP ++HY C+VD LGRAG++ DA ++ E
Sbjct: 621 ITFVSVLTACSHSGLVETGLEILSSMQRIHGIEPELDHYICIVDCLGRAGRLEDAEKLAE 680

Query: 496 KMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWED 555
             P +  +++W  LL +CR H  + LA    EKL +L+P+++  YVLLS+ Y+S  +W+D
Sbjct: 681 ATPYKSSSVLWEILLSSCRVHGDVSLARRVAEKLMRLDPQSSAAYVLLSNTYSSLRQWDD 740

Query: 556 VEVVREKIKTRSVIKLPGYSW 576
              ++  +    V K PG SW
Sbjct: 741 SAALQGLMNKNRVHKTPGQSW 761



 Score =  166 bits (421), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 159/642 (24%), Positives = 280/642 (43%), Gaps = 108/642 (16%)

Query: 28  YARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNG 87
           Y   G  + ARKVFDE     R   SWNA +    +     +A  +F+  PE+++VSWN 
Sbjct: 51  YIECGDGDYARKVFDEMSV--RDVYSWNAFLTFRCKVGDLGEACEVFDGMPERDVVSWNN 108

Query: 88  MVS-----GFVKNGMVAEARRVFDA-MPVR------------------------------ 111
           M+S     GF +  +V   R V D  +P R                              
Sbjct: 109 MISVLVRKGFEEKALVVYKRMVCDGFLPSRFTLASVLSACSKVLDGVFGMRCHGVAVKTG 168

Query: 112 ---NVVSWTSMVRGYVQEGN-VEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLF 167
              N+    +++  Y + G  V+   R+F  + + N VS+T ++GGL ++++V +A ++F
Sbjct: 169 LDKNIFVGNALLSMYAKCGFIVDYGVRVFESLSQPNEVSYTAVIGGLARENKVLEAVQMF 228

Query: 168 DMMPVK----DVVAVTNMIG-GYCEEGRLEEARALFDEMPKR------------NVVTWT 210
            +M  K    D V ++N++      EG    +    +E+ K+            ++    
Sbjct: 229 RLMCEKGVQVDSVCLSNILSISAPREGCDSLSEIYGNELGKQIHCLALRLGFGGDLHLNN 288

Query: 211 TMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAM---PVKP 267
           +++  YA+N+ ++ A  +F  MPE N VSW  M++G+    R  ++ EF   M     +P
Sbjct: 289 SLLEIYAKNKDMNGAELIFAEMPEVNVVSWNIMIVGFGQEYRSDKSVEFLTRMRDSGFQP 348

Query: 268 VVACNEMIMGFGF-DGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQ 326
                  ++G  F  GDV+  + +F  + +     W+AM+  Y       EA+  F +MQ
Sbjct: 349 NEVTCISVLGACFRSGDVETGRRIFSSIPQPSVSAWNAMLSGYSNYEHYEEAISNFRQMQ 408

Query: 327 REGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLV 386
            +    +                 + G+Q+H  ++R+E  ++ ++ S LI +Y +C  + 
Sbjct: 409 FQNLKPDKTTLSVILSSCARLRFLEGGKQIHGVVIRTEISKNSHIVSGLIAVYSECEKME 468

Query: 387 RAKWIFNRYPLK-DVVMWNSMITGYSQHGLGEEALNVFRDMCLSGV-PPDDISFIGVLSA 444
            ++ IF+    + D+  WNSMI+G+  + L  +AL +FR M  + V  P++ SF  VLS+
Sbjct: 469 ISECIFDDCINELDIACWNSMISGFRHNMLDTKALILFRRMHQTAVLCPNETSFATVLSS 528

Query: 445 CSYSGKVKEGREI------------------FESMKCKY-QVEPGIEHYAC--------- 476
           CS    +  GR+                      M CK  +++   + +           
Sbjct: 529 CSRLCSLLHGRQFHGLVVKSGYVSDSFVETALTDMYCKCGEIDSARQFFDAVLRKNTVIW 588

Query: 477 --MVDLLGRAGQVNDAVEIVEKMPM---EPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQ 531
             M+   G  G+ ++AV +  KM     +PD I + S+L AC +H    L E  +E L+ 
Sbjct: 589 NEMIHGYGHNGRGDEAVGLYRKMISSGEKPDGITFVSVLTAC-SHS--GLVETGLEILSS 645

Query: 532 ------LEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRS 567
                 +EP+    Y+ +       GR ED E + E    +S
Sbjct: 646 MQRIHGIEPE-LDHYICIVDCLGRAGRLEDAEKLAEATPYKS 686



 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 88/197 (44%), Gaps = 44/197 (22%)

Query: 353 GRQVHARLVRSEFDQDLYVASALITMYVKC------------------------------ 382
           G+ +H  +VR     D Y+ + L+ +Y++C                              
Sbjct: 25  GKVIHGFIVRMGMKSDTYLCNRLLDLYIECGDGDYARKVFDEMSVRDVYSWNAFLTFRCK 84

Query: 383 -GDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGV 441
            GDL  A  +F+  P +DVV WN+MI+   + G  E+AL V++ M   G  P   +   V
Sbjct: 85  VGDLGEACEVFDGMPERDVVSWNNMISVLVRKGFEEKALVVYKRMVCDGFLPSRFTLASV 144

Query: 442 LSACSYSGKVKEGREIFESMKC-----KYQVEPGIEHYACMVDLLGRAGQVND-AVEIVE 495
           LSACS   KV +G  +F  M+C     K  ++  I     ++ +  + G + D  V + E
Sbjct: 145 LSACS---KVLDG--VF-GMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFIVDYGVRVFE 198

Query: 496 KMPMEPDAIVWGSLLGA 512
            +  +P+ + + +++G 
Sbjct: 199 SLS-QPNEVSYTAVIGG 214


>AT4G31070.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:15118696-15120537 REVERSE
           LENGTH=613
          Length = 613

 Score =  262 bits (670), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 168/538 (31%), Positives = 264/538 (49%), Gaps = 41/538 (7%)

Query: 81  NIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM- 139
           + V  N ++S + K       R+VFD M  R+ VS+ S++    Q+G + EA +L   M 
Sbjct: 81  DTVVSNSLISMYAKFSRKYAVRKVFDEMLHRDTVSYCSIINSCCQDGLLYEAMKLIKEMY 140

Query: 140 -----PEKNVVSWTVML----GGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGR 190
                P+  +V+  + L    G   K +R+  A  L D    + V+  T ++  Y +   
Sbjct: 141 FYGFIPKSELVASLLALCTRMGSSSKVARMFHALVLVDERMQESVLLSTALVDMYLKFDD 200

Query: 191 LEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERN-------------- 236
              A  +FD+M  +N V+WT M+SG   N+  ++   LF  M   N              
Sbjct: 201 HAAAFHVFDQMEVKNEVSWTAMISGCVANQNYEMGVDLFRAMQRENLRPNRVTLLSVLPA 260

Query: 237 --EVSWTAMLMGYTHSGRMRE---ASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVF 291
             E+++ + L+   H    R    A E   A  +     C          G+V  ++ +F
Sbjct: 261 CVELNYGSSLVKEIHGFSFRHGCHADERLTAAFMTMYCRC----------GNVSLSRVLF 310

Query: 292 EKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXD 351
           E  + RD   WS+MI  Y   G   E + L  +M++EG   N                  
Sbjct: 311 ETSKVRDVVMWSSMISGYAETGDCSEVMNLLNQMRKEGIEANSVTLLAIVSACTNSTLLS 370

Query: 352 HGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYS 411
               VH+++++  F   + + +ALI MY KCG L  A+ +F     KD+V W+SMI  Y 
Sbjct: 371 FASTVHSQILKCGFMSHILLGNALIDMYAKCGSLSAAREVFYELTEKDLVSWSSMINAYG 430

Query: 412 QHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGI 471
            HG G EAL +F+ M   G   DD++F+ +LSAC+++G V+E + IF +   KY +   +
Sbjct: 431 LHGHGSEALEIFKGMIKGGHEVDDMAFLAILSACNHAGLVEEAQTIF-TQAGKYHMPVTL 489

Query: 472 EHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLA-EVAVEKLA 530
           EHYAC ++LLGR G+++DA E+   MPM+P A +W SLL AC TH +LD+A ++   +L 
Sbjct: 490 EHYACYINLLGRFGKIDDAFEVTINMPMKPSARIWSSLLSACETHGRLDVAGKIIANELM 549

Query: 531 QLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVG 588
           + EP N   YVLLS ++   G +   E VR  ++ R + K  G+S IE E +   + G
Sbjct: 550 KSEPDNPANYVLLSKIHTESGNYHAAEEVRRVMQRRKLNKCYGFSKIEPELQIEDYQG 607



 Score =  100 bits (250), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 111/501 (22%), Positives = 195/501 (38%), Gaps = 61/501 (12%)

Query: 21  STGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAA-----------------YFQ 63
           S   IS YA+  +    RKVFDE   +HR T S+ +++ +                 YF 
Sbjct: 85  SNSLISMYAKFSRKYAVRKVFDEM--LHRDTVSYCSIINSCCQDGLLYEAMKLIKEMYFY 142

Query: 64  AHQPH------------------------QAVTLFETTPEKNIVSWNGMVSGFVKNGMVA 99
              P                          A+ L +   +++++    +V  ++K    A
Sbjct: 143 GFIPKSELVASLLALCTRMGSSSKVARMFHALVLVDERMQESVLLSTALVDMYLKFDDHA 202

Query: 100 EARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLK--- 156
            A  VFD M V+N VSWT+M+ G V   N E    LF  M  +N+    V L  +L    
Sbjct: 203 AAFHVFDQMEVKNEVSWTAMISGCVANQNYEMGVDLFRAMQRENLRPNRVTLLSVLPACV 262

Query: 157 -----DSRVEDARKL-FDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWT 210
                 S V++     F      D       +  YC  G +  +R LF+    R+VV W+
Sbjct: 263 ELNYGSSLVKEIHGFSFRHGCHADERLTAAFMTMYCRCGNVSLSRVLFETSKVRDVVMWS 322

Query: 211 TMVSGYARNRRVDVARKLFEVM----PERNEVSWTAMLMGYTHSGRMREA----SEFFDA 262
           +M+SGYA          L   M     E N V+  A++   T+S  +  A    S+    
Sbjct: 323 SMISGYAETGDCSEVMNLLNQMRKEGIEANSVTLLAIVSACTNSTLLSFASTVHSQILKC 382

Query: 263 MPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLF 322
             +  ++  N +I  +   G +  A+ VF ++ E+D  +WS+MI  Y   G   EAL +F
Sbjct: 383 GFMSHILLGNALIDMYAKCGSLSAAREVFYELTEKDLVSWSSMINAYGLHGHGSEALEIF 442

Query: 323 ARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKC 382
             M + G  ++                 +  + +  +  +      L   +  I +  + 
Sbjct: 443 KGMIKGGHEVDDMAFLAILSACNHAGLVEEAQTIFTQAGKYHMPVTLEHYACYINLLGRF 502

Query: 383 GDLVRAKWIFNRYPLK-DVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGV 441
           G +  A  +    P+K    +W+S+++    HG  + A  +  +  +   P +  +++ +
Sbjct: 503 GKIDDAFEVTINMPMKPSARIWSSLLSACETHGRLDVAGKIIANELMKSEPDNPANYVLL 562

Query: 442 LSACSYSGKVKEGREIFESMK 462
               + SG      E+   M+
Sbjct: 563 SKIHTESGNYHAAEEVRRVMQ 583



 Score = 76.3 bits (186), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 137/330 (41%), Gaps = 32/330 (9%)

Query: 19  CTSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTP 78
           CT  G+ S+ AR+    +A  + DE   +  +     A+V  Y +      A  +F+   
Sbjct: 158 CTRMGSSSKVARMF---HALVLVDE--RMQESVLLSTALVDMYLKFDDHAAAFHVFDQME 212

Query: 79  EKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNV----VSWTSMVRGYVQ----EGNVE 130
            KN VSW  M+SG V N        +F AM   N+    V+  S++   V+       V+
Sbjct: 213 VKNEVSWTAMISGCVANQNYEMGVDLFRAMQRENLRPNRVTLLSVLPACVELNYGSSLVK 272

Query: 131 EAERLFWR----MPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYC 186
           E     +R      E+   ++  M     +   V  +R LF+   V+DVV  ++MI GY 
Sbjct: 273 EIHGFSFRHGCHADERLTAAFMTM---YCRCGNVSLSRVLFETSKVRDVVMWSSMISGYA 329

Query: 187 EEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSW-- 240
           E G   E   L ++M K     N VT   +VS    +  +  A  +   + +   +S   
Sbjct: 330 ETGDCSEVMNLLNQMRKEGIEANSVTLLAIVSACTNSTLLSFASTVHSQILKCGFMSHIL 389

Query: 241 --TAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKM---- 294
              A++  Y   G +  A E F  +  K +V+ + MI  +G  G    A  +F+ M    
Sbjct: 390 LGNALIDMYAKCGSLSAAREVFYELTEKDLVSWSSMINAYGLHGHGSEALEIFKGMIKGG 449

Query: 295 RERDDGTWSAMIKVYERKGFELEALGLFAR 324
            E DD  + A++      G   EA  +F +
Sbjct: 450 HEVDDMAFLAILSACNHAGLVEEAQTIFTQ 479



 Score = 52.8 bits (125), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/188 (20%), Positives = 86/188 (45%), Gaps = 5/188 (2%)

Query: 353 GRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQ 412
           G Q+H   +++  D D  V+++LI+MY K       + +F+    +D V + S+I    Q
Sbjct: 66  GAQLHCLCLKAGADCDTVVSNSLISMYAKFSRKYAVRKVFDEMLHRDTVSYCSIINSCCQ 125

Query: 413 HGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESM-KCKYQVEPGI 471
            GL  EA+ + ++M   G  P       +L+ C+  G   +   +F ++     +++  +
Sbjct: 126 DGLLYEAMKLIKEMYFYGFIPKSELVASLLALCTRMGSSSKVARMFHALVLVDERMQESV 185

Query: 472 EHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQ 531
                +VD+  +      A  + ++M ++ + + W +++  C  +      E+ V+    
Sbjct: 186 LLSTALVDMYLKFDDHAAAFHVFDQMEVKNE-VSWTAMISGCVANQNY---EMGVDLFRA 241

Query: 532 LEPKNAGP 539
           ++ +N  P
Sbjct: 242 MQRENLRP 249


>AT5G52850.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:21414935-21417616 REVERSE
           LENGTH=893
          Length = 893

 Score =  261 bits (668), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 195/742 (26%), Positives = 334/742 (45%), Gaps = 89/742 (11%)

Query: 28  YARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETT-------PEK 80
           Y++ GQ + A ++F    +    T SW  M+++   A +  +A+  +           E 
Sbjct: 169 YSKCGQFKEACELFSSLQNAD--TISWTMMISSLVGARKWREALQFYSEMVKAGVPPNEF 226

Query: 81  NIVSWNGMVSGF-VKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM 139
             V   G  S   ++ G    +  +   +P+ NVV  TS+V  Y Q   +E+A R+    
Sbjct: 227 TFVKLLGASSFLGLEFGKTIHSNIIVRGIPL-NVVLKTSLVDFYSQFSKMEDAVRVLNSS 285

Query: 140 PEKNVVSWTVMLGGLLKDSRVEDARKLF------DMMP---------------------- 171
            E++V  WT ++ G +++ R ++A   F       + P                      
Sbjct: 286 GEQDVFLWTSVVSGFVRNLRAKEAVGTFLEMRSLGLQPNNFTYSAILSLCSAVRSLDFGK 345

Query: 172 ----------VKDVVAVTN-MIGGY--CEEGRLEEARALFDEMPKRNVVTWTTMVSGYAR 218
                      +D   V N ++  Y  C    +E +R +F  M   NVV+WTT++ G   
Sbjct: 346 QIHSQTIKVGFEDSTDVGNALVDMYMKCSASEVEASR-VFGAMVSPNVVSWTTLILGLVD 404

Query: 219 NRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAMPVKPV----VA 270
           +  V     L   M +R    N V+ + +L   +    +R   E    +  + V    V 
Sbjct: 405 HGFVQDCFGLLMEMVKREVEPNVVTLSGVLRACSKLRHVRRVLEIHAYLLRRHVDGEMVV 464

Query: 271 CNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGA 330
            N ++  +     VD A  V   M+ RD+ T+++++  +   G    AL +   M  +G 
Sbjct: 465 GNSLVDAYASSRKVDYAWNVIRSMKRRDNITYTSLVTRFNELGKHEMALSVINYMYGDGI 524

Query: 331 ALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKW 390
            ++                 + G+ +H   V+S F     V ++L+ MY KCG L  AK 
Sbjct: 525 RMDQLSLPGFISASANLGALETGKHLHCYSVKSGFSGAASVLNSLVDMYSKCGSLEDAKK 584

Query: 391 IFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGK 450
           +F      DVV WN +++G + +G    AL+ F +M +    PD ++F+ +LSACS    
Sbjct: 585 VFEEIATPDVVSWNGLVSGLASNGFISSALSAFEEMRMKETEPDSVTFLILLSACSNGRL 644

Query: 451 VKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLL 510
              G E F+ MK  Y +EP +EHY  +V +LGRAG++ +A  +VE M ++P+A+++ +LL
Sbjct: 645 TDLGLEYFQVMKKIYNIEPQVEHYVHLVGILGRAGRLEEATGVVETMHLKPNAMIFKTLL 704

Query: 511 GACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIK 570
            ACR    L L E    K   L P +   Y+LL+ +Y   G+ E  +  R  +  + + K
Sbjct: 705 RACRYRGNLSLGEDMANKGLALAPSDPALYILLADLYDESGKPELAQKTRNLMTEKRLSK 764

Query: 571 LPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDVEEE 630
             G S +EV+ K H FV  D          +  +++ +G+  +          +  ++EE
Sbjct: 765 KLGKSTVEVQGKVHSFVSED----------VTRVDKTNGIYAE----------IESIKEE 804

Query: 631 EK--------THSLGYHSEKLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTG 682
            K          +  +HS K A+ YG +      P+ V+KN  +C DCH  + ++ ++  
Sbjct: 805 IKRFGSPYRGNENASFHSAKQAVVYGFIYASPEAPVHVVKNKILCKDCHEFVSILTRLVD 864

Query: 683 REIIVRDANRFHHFKDGYCSCK 704
           ++I VRD N+ H FK+G CSCK
Sbjct: 865 KKITVRDGNQVHIFKNGECSCK 886



 Score =  125 bits (315), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 138/603 (22%), Positives = 247/603 (40%), Gaps = 91/603 (15%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFE------TTP 78
           +S Y +   I NARK+FDE  H  RT  +W  M++A+ ++ +   A++LFE      T P
Sbjct: 65  LSLYLKTDGIWNARKLFDEMSH--RTVFAWTVMISAFTKSQEFASALSLFEEMMASGTHP 122

Query: 79  EKNI-------------VSWNGMVSGFV--------------------KNGMVAEARRVF 105
            +               +S+ G V G V                    K G   EA  +F
Sbjct: 123 NEFTFSSVVRSCAGLRDISYGGRVHGSVIKTGFEGNSVVGSSLSDLYSKCGQFKEACELF 182

Query: 106 DAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSR---VED 162
            ++   + +SWT M+   V      EA + +  M +  V         LL  S    +E 
Sbjct: 183 SSLQNADTISWTMMISSLVGARKWREALQFYSEMVKAGVPPNEFTFVKLLGASSFLGLEF 242

Query: 163 ARKLFDMMPVK----DVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYAR 218
            + +   + V+    +VV  T+++  Y +  ++E+A  + +   +++V  WT++VSG+ R
Sbjct: 243 GKTIHSNIIVRGIPLNVVLKTSLVDFYSQFSKMEDAVRVLNSSGEQDVFLWTSVVSGFVR 302

Query: 219 NRRVDVARKLFEVMP----ERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEM 274
           N R   A   F  M     + N  +++A+L     + R  +  +   +  +K        
Sbjct: 303 NLRAKEAVGTFLEMRSLGLQPNNFTYSAIL-SLCSAVRSLDFGKQIHSQTIK-------- 353

Query: 275 IMGFGFDGDVDR---------------AKAVFEKMRERDDGTWSAMIKVYERKGFELEAL 319
            +GF    DV                 A  VF  M   +  +W+ +I      GF  +  
Sbjct: 354 -VGFEDSTDVGNALVDMYMKCSASEVEASRVFGAMVSPNVVSWTTLILGLVDHGFVQDCF 412

Query: 320 GLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMY 379
           GL   M +     N                     ++HA L+R   D ++ V ++L+  Y
Sbjct: 413 GLLMEMVKREVEPNVVTLSGVLRACSKLRHVRRVLEIHAYLLRRHVDGEMVVGNSLVDAY 472

Query: 380 VKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFI 439
                +  A  +      +D + + S++T +++ G  E AL+V   M   G+  D +S  
Sbjct: 473 ASSRKVDYAWNVIRSMKRRDNITYTSLVTRFNELGKHEMALSVINYMYGDGIRMDQLSLP 532

Query: 440 GVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYA----CMVDLLGRAGQVNDAVEIVE 495
           G +SA +  G ++ G+     + C Y V+ G    A     +VD+  + G + DA ++ E
Sbjct: 533 GFISASANLGALETGKH----LHC-YSVKSGFSGAASVLNSLVDMYSKCGSLEDAKKVFE 587

Query: 496 KMPMEPDAIVWGSLLGACRTHMKLDLAEVAVE--KLAQLEPKNAGPYVLLSHMYASKGRW 553
           ++   PD + W  L+    ++  +  A  A E  ++ + EP +    +LLS    S GR 
Sbjct: 588 EIAT-PDVVSWNGLVSGLASNGFISSALSAFEEMRMKETEPDSVTFLILLSA--CSNGRL 644

Query: 554 EDV 556
            D+
Sbjct: 645 TDL 647



 Score =  109 bits (273), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 104/454 (22%), Positives = 196/454 (43%), Gaps = 32/454 (7%)

Query: 80  KNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM 139
           +N+   N ++S ++K   +  AR++FD M  R V +WT M+  + +      A  LF  M
Sbjct: 56  ENLDLCNNLLSLYLKTDGIWNARKLFDEMSHRTVFAWTVMISAFTKSQEFASALSLFEEM 115

Query: 140 ------PEKNVVSWTVMLGGLLKD----SRVEDA--RKLFDMMPVKDVVAVTNMIGGYCE 187
                 P +   S  V     L+D     RV  +  +  F+     + V  +++   Y +
Sbjct: 116 MASGTHPNEFTFSSVVRSCAGLRDISYGGRVHGSVIKTGFE----GNSVVGSSLSDLYSK 171

Query: 188 EGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAM 243
            G+ +EA  LF  +   + ++WT M+S     R+   A + +  M +     NE ++  +
Sbjct: 172 CGQFKEACELFSSLQNADTISWTMMISSLVGARKWREALQFYSEMVKAGVPPNEFTFVKL 231

Query: 244 LMGYT----HSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDD 299
           L   +      G+   ++     +P+  VV    ++  +     ++ A  V     E+D 
Sbjct: 232 LGASSFLGLEFGKTIHSNIIVRGIPLN-VVLKTSLVDFYSQFSKMEDAVRVLNSSGEQDV 290

Query: 300 GTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHAR 359
             W++++  + R     EA+G F  M+  G   N                 D G+Q+H++
Sbjct: 291 FLWTSVVSGFVRNLRAKEAVGTFLEMRSLGLQPNNFTYSAILSLCSAVRSLDFGKQIHSQ 350

Query: 360 LVRSEFDQDLYVASALITMYVKC-GDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEE 418
            ++  F+    V +AL+ MY+KC    V A  +F      +VV W ++I G   HG  ++
Sbjct: 351 TIKVGFEDSTDVGNALVDMYMKCSASEVEASRVFGAMVSPNVVSWTTLILGLVDHGFVQD 410

Query: 419 ALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFE--SMKCKYQVEPGIEHYAC 476
              +  +M    V P+ ++  GVL ACS   K++  R + E  +   +  V+  +     
Sbjct: 411 CFGLLMEMVKREVEPNVVTLSGVLRACS---KLRHVRRVLEIHAYLLRRHVDGEMVVGNS 467

Query: 477 MVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLL 510
           +VD    + +V+ A  ++  M    D I + SL+
Sbjct: 468 LVDAYASSRKVDYAWNVIRSMK-RRDNITYTSLV 500



 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 79/164 (48%), Gaps = 6/164 (3%)

Query: 353 GRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQ 412
           G  +H  +++    ++L + + L+++Y+K   +  A+ +F+    + V  W  MI+ +++
Sbjct: 42  GLHIHCPVIKFGLLENLDLCNNLLSLYLKTDGIWNARKLFDEMSHRTVFAWTVMISAFTK 101

Query: 413 HGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIE 472
                 AL++F +M  SG  P++ +F  V+ +C+    +  G  +  S+  K   E    
Sbjct: 102 SQEFASALSLFEEMMASGTHPNEFTFSSVVRSCAGLRDISYGGRVHGSV-IKTGFEGNSV 160

Query: 473 HYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVW----GSLLGA 512
             + + DL  + GQ  +A E+   +    D I W     SL+GA
Sbjct: 161 VGSSLSDLYSKCGQFKEACELFSSL-QNADTISWTMMISSLVGA 203


>AT1G50270.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:18622044-18623834 FORWARD
           LENGTH=596
          Length = 596

 Score =  260 bits (665), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 143/437 (32%), Positives = 233/437 (53%), Gaps = 42/437 (9%)

Query: 210 TTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVV 269
            +++SGY+ +   D A +LF+   +++ V+WTAM+ G+  +G   EA  +F  M  K  V
Sbjct: 142 NSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMK-KTGV 200

Query: 270 ACNEMIM-------------GFG-----------------FDGD-----------VDRAK 288
           A NEM +              FG                 F G             D A+
Sbjct: 201 AANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQ 260

Query: 289 AVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXX 348
            VF++M  R+  TW+A+I  Y +     + + +F  M +   A N               
Sbjct: 261 KVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVG 320

Query: 349 XXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMIT 408
               GR+VH  ++++  + +    + LI +YVKCG L  A  +F R   K+V  W +MI 
Sbjct: 321 ALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMIN 380

Query: 409 GYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVE 468
           G++ HG   +A ++F  M  S V P++++F+ VLSAC++ G V+EGR +F SMK ++ +E
Sbjct: 381 GFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNME 440

Query: 469 PGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEK 528
           P  +HYACMVDL GR G + +A  ++E+MPMEP  +VWG+L G+C  H   +L + A  +
Sbjct: 441 PKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASR 500

Query: 529 LAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVG 588
           + +L+P ++G Y LL+++Y+    W++V  VR+++K + V+K PG+SWIEV+ K   F+ 
Sbjct: 501 VIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVKGKLCEFIA 560

Query: 589 GDNNCHPEQPIIMKMLE 605
            D+    E   + K L+
Sbjct: 561 FDDKKPLESDDLYKTLD 577



 Score =  115 bits (289), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 163/343 (47%), Gaps = 23/343 (6%)

Query: 86  NGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVV 145
           N ++SG+  +G+   A R+FD    ++VV+WT+M+ G+V+ G+  EA   F  M +  V 
Sbjct: 142 NSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVA 201

Query: 146 SWTVMLGGLLKDS-RVEDAR-------KLFDMMPVK-DVVAVTNMIGGYCEEGRLEEARA 196
           +  + +  +LK + +VED R          +   VK DV   ++++  Y +    ++A+ 
Sbjct: 202 ANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQK 261

Query: 197 LFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGR 252
           +FDEMP RNVVTWT +++GY ++R  D    +FE M +     NE + +++L    H G 
Sbjct: 262 VFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGA 321

Query: 253 MREASEFFDAMPVKPV----VACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKV 308
           +         M    +     A   +I  +   G ++ A  VFE++ E++  TW+AMI  
Sbjct: 322 LHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMING 381

Query: 309 YERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARL---VRSEF 365
           +   G+  +A  LF  M     + N                 + GR++   +      E 
Sbjct: 382 FAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEP 441

Query: 366 DQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDV-VMWNSMI 407
             D Y  + ++ ++ + G L  AK +  R P++   V+W ++ 
Sbjct: 442 KADHY--ACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALF 482



 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 142/343 (41%), Gaps = 93/343 (27%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVF--------- 105
           N++++ Y  +     A  LF+   +K++V+W  M+ GFV+NG  +EA   F         
Sbjct: 142 NSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVA 201

Query: 106 -DAMPVRNV---------VSWTSMVRG-YVQEGNV--------------------EEAER 134
            + M V +V         V +   V G Y++ G V                    ++A++
Sbjct: 202 ANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQK 261

Query: 135 LFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDV------------------- 175
           +F  MP +NVV+WT ++ G ++    +    +F+ M   DV                   
Sbjct: 262 VFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGA 321

Query: 176 --------------------VAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSG 215
                                A T +I  Y + G LEEA  +F+ + ++NV TWT M++G
Sbjct: 322 LHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMING 381

Query: 216 YARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAM-------P 264
           +A +     A  LF  M       NEV++ A+L    H G + E    F +M       P
Sbjct: 382 FAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEP 441

Query: 265 VKPVVACNEMIMGFGFDGDVDRAKAVFEKM-RERDDGTWSAMI 306
                AC  M+  FG  G ++ AKA+ E+M  E  +  W A+ 
Sbjct: 442 KADHYAC--MVDLFGRKGLLEEAKALIERMPMEPTNVVWGALF 482



 Score = 87.0 bits (214), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 107/241 (44%), Gaps = 20/241 (8%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKN 81
           +  +  Y +    ++A+KVFDE P   R   +W A++A Y Q+    + + +FE   + +
Sbjct: 244 SSLVDMYGKCSCYDDAQKVFDEMP--SRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSD 301

Query: 82  IV----SWNGMVSGFVKNGMVAEARRVFDAMPVR----NVVSWTSMVRGYVQEGNVEEAE 133
           +     + + ++S     G +   RRV   M       N  + T+++  YV+ G +EEA 
Sbjct: 302 VAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAI 361

Query: 134 RLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDV----VAVTNMIGGYCEEG 189
            +F R+ EKNV +WT M+ G        DA  LF  M    V    V    ++      G
Sbjct: 362 LVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGG 421

Query: 190 RLEEARALFDEMPKR-----NVVTWTTMVSGYARNRRVDVARKLFEVMP-ERNEVSWTAM 243
            +EE R LF  M  R         +  MV  + R   ++ A+ L E MP E   V W A+
Sbjct: 422 LVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGAL 481

Query: 244 L 244
            
Sbjct: 482 F 482



 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 84/162 (51%), Gaps = 9/162 (5%)

Query: 355 QVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHG 414
           Q HA +V+   D D +V ++LI+ Y   G    A  +F+    KDVV W +MI G+ ++G
Sbjct: 124 QFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNG 183

Query: 415 LGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREI----FESMKCKYQVEPG 470
              EA+  F +M  +GV  ++++ + VL A      V+ GR +     E+ + K  V  G
Sbjct: 184 SASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIG 243

Query: 471 IEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGA 512
               + +VD+ G+    +DA ++ ++MP   + + W +L+  
Sbjct: 244 ----SSLVDMYGKCSCYDDAQKVFDEMP-SRNVVTWTALIAG 280



 Score = 62.8 bits (151), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 58/269 (21%), Positives = 117/269 (43%), Gaps = 30/269 (11%)

Query: 20  TSTGAISRYARIGQIENARKV--FDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETT 77
           T +  +S  A +G +   R+V  +     I   T++   ++  Y +     +A+ +FE  
Sbjct: 308 TLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERL 367

Query: 78  PEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNV----VSWTSMVRGYVQEGNVEEAE 133
            EKN+ +W  M++GF  +G   +A  +F  M   +V    V++ +++      G VEE  
Sbjct: 368 HEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGR 427

Query: 134 RLFWRMP-----EKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYC-- 186
           RLF  M      E     +  M+    +   +E+A+ L + MP++    V   + G C  
Sbjct: 428 RLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLL 487

Query: 187 ----EEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEV---- 238
               E G+   +R +  ++   +   +T + + Y+ ++  D   ++ + M ++  V    
Sbjct: 488 HKDYELGKYAASRVI--KLQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPG 545

Query: 239 -SWTAMLMGYTHSGRMREASEFFDAMPVK 266
            SW  +       G++ E   F D  P++
Sbjct: 546 FSWIEV------KGKLCEFIAFDDKKPLE 568


>AT5G27110.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:9538572-9540647 REVERSE
           LENGTH=691
          Length = 691

 Score =  260 bits (664), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 164/547 (29%), Positives = 272/547 (49%), Gaps = 20/547 (3%)

Query: 81  NIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMP 140
           ++V  + +V  + K  +   + +VFD MP R+V SW +++  + Q G  E+A  LF RM 
Sbjct: 141 DVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSGEAEKALELFGRME 200

Query: 141 ----EKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVK----DVVAVTNMIGGYCEEGRLE 192
               E N VS TV +    +   +E  +++      K    D    + ++  Y +   LE
Sbjct: 201 SSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLE 260

Query: 193 EARALFDEMPKRNVVTWTTMVSGYA----RNRRVDVARKLFEVMPERNEVSWTAMLMGYT 248
            AR +F +MP++++V W +M+ GY         V++  ++       ++ + T++LM  +
Sbjct: 261 VAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACS 320

Query: 249 HSGRMREASEFFDAMPVKPVVACNEMIMGFGFD-----GDVDRAKAVFEKMRERDDGTWS 303
            S  +    +F     ++ VV  +  +     D     G+ + A+ VF K ++    +W+
Sbjct: 321 RSRNLLHG-KFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAESWN 379

Query: 304 AMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRS 363
            MI  Y   G   +A+ ++ +M   G   +                 + G+Q+H  +  S
Sbjct: 380 VMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISES 439

Query: 364 EFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVF 423
             + D  + SAL+ MY KCG+   A  IFN  P KDVV W  MI+ Y  HG   EAL  F
Sbjct: 440 RLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQF 499

Query: 424 RDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGR 483
            +M   G+ PD ++ + VLSAC ++G + EG + F  M+ KY +EP IEHY+CM+D+LGR
Sbjct: 500 DEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGIEPIIEHYSCMIDILGR 559

Query: 484 AGQVNDAVEIVEKMPMEPD-AIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVL 542
           AG++ +A EI+++ P   D A +  +L  AC  H++  L +     L +  P +A  Y++
Sbjct: 560 AGRLLEAYEIIQQTPETSDNAELLSTLFSACCLHLEHSLGDRIARLLVENYPDDASTYMV 619

Query: 543 LSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMK 602
           L ++YAS   W+    VR K+K   + K PG SWIE+  K   F   D + H     + +
Sbjct: 620 LFNLYASGESWDAARRVRLKMKEMGLRKKPGCSWIEMSDKVCHFFAEDRS-HLRAENVYE 678

Query: 603 MLERLDG 609
            L  L G
Sbjct: 679 CLALLSG 685



 Score =  144 bits (363), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 122/489 (24%), Positives = 218/489 (44%), Gaps = 47/489 (9%)

Query: 44  TPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTP-EKNIVSWNGMVSGFVKNGMVAEAR 102
           T  + R      +++  YF       A  +FE      ++  WN ++SG+ KN M  +  
Sbjct: 32  TLGLRRDVVLCKSLINVYFTCKDHCSARHVFENFDIRSDVYIWNSLMSGYSKNSMFHDTL 91

Query: 103 RVFD-----AMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKD 157
            VF      ++ V +  ++ ++++ Y   G      R F              LG ++  
Sbjct: 92  EVFKRLLNCSICVPDSFTFPNVIKAYGALG------REF--------------LGRMIHT 131

Query: 158 SRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYA 217
             V+          V DVV  ++++G Y +    E +  +FDEMP+R+V +W T++S + 
Sbjct: 132 LVVKSGY-------VCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFY 184

Query: 218 RNRRVDVARKLFEVMP----ERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNE 273
           ++   + A +LF  M     E N VS T  +   +    +    E      VK     +E
Sbjct: 185 QSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKC-VKKGFELDE 243

Query: 274 MIMG-----FGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQRE 328
            +       +G    ++ A+ VF+KM  +    W++MIK Y  KG     + +  RM  E
Sbjct: 244 YVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIE 303

Query: 329 GAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRA 388
           G   +                  HG+ +H  ++RS  + D+YV  +LI +Y KCG+   A
Sbjct: 304 GTRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLA 363

Query: 389 KWIFNRYPLKDVV-MWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSY 447
           + +F++   KDV   WN MI+ Y   G   +A+ V+  M   GV PD ++F  VL ACS 
Sbjct: 364 ETVFSKTQ-KDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQ 422

Query: 448 SGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWG 507
              +++G++I  S+  + ++E      + ++D+  + G   +A  I   +P + D + W 
Sbjct: 423 LAALEKGKQIHLSIS-ESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIP-KKDVVSWT 480

Query: 508 SLLGACRTH 516
            ++ A  +H
Sbjct: 481 VMISAYGSH 489



 Score = 89.7 bits (221), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 94/434 (21%), Positives = 181/434 (41%), Gaps = 62/434 (14%)

Query: 21  STGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLF----ET 76
           ++  +  YA+    EN+ +VFDE P   R  +SWN +++ ++Q+ +  +A+ LF     +
Sbjct: 145 ASSLVGMYAKFNLFENSLQVFDEMPE--RDVASWNTVISCFYQSGEAEKALELFGRMESS 202

Query: 77  TPEKNIVSWNGMVSG--------------------------FVKNGMV---------AEA 101
             E N VS    +S                           +V + +V           A
Sbjct: 203 GFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEVA 262

Query: 102 RRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM-PEKNVVSWTVMLGGLLKDSRV 160
           R VF  MP +++V+W SM++GYV +G+ +    +  RM  E    S T +   L+  SR 
Sbjct: 263 REVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRS 322

Query: 161 EDAR--KLFDMMPVKDVVAV-----TNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMV 213
            +    K      ++ VV        ++I  Y + G    A  +F +  K    +W  M+
Sbjct: 323 RNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAESWNVMI 382

Query: 214 SGYAR----NRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVV 269
           S Y       + V+V  ++  V  + + V++T++L   +    + +  +   ++  +  +
Sbjct: 383 SSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSIS-ESRL 441

Query: 270 ACNEMIMGFGFD-----GDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFAR 324
             +E+++    D     G+   A  +F  + ++D  +W+ MI  Y   G   EAL  F  
Sbjct: 442 ETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQFDE 501

Query: 325 MQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVA--SALITMYVKC 382
           MQ+ G   +                 D G +  +++ RS++  +  +   S +I +  + 
Sbjct: 502 MQKFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQM-RSKYGIEPIIEHYSCMIDILGRA 560

Query: 383 GDLVRAKWIFNRYP 396
           G L+ A  I  + P
Sbjct: 561 GRLLEAYEIIQQTP 574



 Score = 65.9 bits (159), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 94/195 (48%), Gaps = 21/195 (10%)

Query: 354 RQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLK-DVVMWNSMITGYSQ 412
           + VH R++     +D+ +  +LI +Y  C D   A+ +F  + ++ DV +WNS+++GYS+
Sbjct: 24  KLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVFENFDIRSDVYIWNSLMSGYSK 83

Query: 413 HGLGEEALNVF-RDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGI 471
           + +  + L VF R +  S   PD  +F  V+ A  Y      GRE    M     V+ G 
Sbjct: 84  NSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKA--YGAL---GREFLGRMIHTLVVKSG- 137

Query: 472 EHYACMV----DLLGRAGQVN---DAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEV 524
             Y C V     L+G   + N   +++++ ++MP E D   W +++       +   AE 
Sbjct: 138 --YVCDVVVASSLVGMYAKFNLFENSLQVFDEMP-ERDVASWNTVISC---FYQSGEAEK 191

Query: 525 AVEKLAQLEPKNAGP 539
           A+E   ++E     P
Sbjct: 192 ALELFGRMESSGFEP 206


>AT4G32430.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:15652982-15655273 FORWARD
           LENGTH=763
          Length = 763

 Score =  260 bits (664), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 184/653 (28%), Positives = 319/653 (48%), Gaps = 77/653 (11%)

Query: 17  FQCTSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAY--------------- 61
           F C S   +  Y + G+ +NA  +F+    +     SWN +++ +               
Sbjct: 110 FVCVSNAVMGMYRKAGRFDNALCIFENL--VDPDVVSWNTILSGFDDNQIALNFVVRMKS 167

Query: 62  ----FQAHQPHQAV-----------------TLFETTPEKNIVSWNGMVSGFVKNGMVAE 100
               F A     A+                 T+ +T  E ++V  N  ++ + ++G    
Sbjct: 168 AGVVFDAFTYSTALSFCVGSEGFLLGLQLQSTVVKTGLESDLVVGNSFITMYSRSGSFRG 227

Query: 101 ARRVFDAMPVRNVVSWTSMVRGYVQEGNVE-EAERLFWRMPEKNV----VSWTVMLGGLL 155
           ARRVFD M  ++++SW S++ G  QEG    EA  +F  M  + V    VS+T ++    
Sbjct: 228 ARRVFDEMSFKDMISWNSLLSGLSQEGTFGFEAVVIFRDMMREGVELDHVSFTSVITTCC 287

Query: 156 KDSRVEDARKLFDMM---PVKDVVAVTN-MIGGYCEEGRLEEARALFDEMPKRNVVTWTT 211
            ++ ++ AR++  +      + ++ V N ++  Y + G LE  +++F +M +RNVV+WTT
Sbjct: 288 HETDLKLARQIHGLCIKRGYESLLEVGNILMSRYSKCGVLEAVKSVFHQMSERNVVSWTT 347

Query: 212 MVSGYARNRRVDVARKLFE-VMPERNEVSWTAMLMGYTHSGRMREASEFF-----DAMPV 265
           M+S    +         F+ V P  NEV++  ++     + +++E  +            
Sbjct: 348 MISSNKDDAVSIFLNMRFDGVYP--NEVTFVGLINAVKCNEQIKEGLKIHGLCIKTGFVS 405

Query: 266 KPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARM 325
           +P V  N  I  +     ++ AK  FE +  R+  +W+AMI  + + GF  EAL +F   
Sbjct: 406 EPSVG-NSFITLYAKFEALEDAKKAFEDITFREIISWNAMISGFAQNGFSHEALKMFLSA 464

Query: 326 QRE--------GAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALIT 377
             E        G+ LN                   G++ HA L++   +    V+SAL+ 
Sbjct: 465 AAETMPNEYTFGSVLN-------AIAFAEDISVKQGQRCHAHLLKLGLNSCPVVSSALLD 517

Query: 378 MYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDIS 437
           MY K G++  ++ +FN    K+  +W S+I+ YS HG  E  +N+F  M    V PD ++
Sbjct: 518 MYAKRGNIDESEKVFNEMSQKNQFVWTSIISAYSSHGDFETVMNLFHKMIKENVAPDLVT 577

Query: 438 FIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKM 497
           F+ VL+AC+  G V +G EIF  M   Y +EP  EHY+CMVD+LGRAG++ +A E++ ++
Sbjct: 578 FLSVLTACNRKGMVDKGYEIFNMMIEVYNLEPSHEHYSCMVDMLGRAGRLKEAEELMSEV 637

Query: 498 PMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVE 557
           P  P   +  S+LG+CR H  + +     E   +++P+ +G YV + ++YA K  W+   
Sbjct: 638 PGGPGESMLQSMLGSCRLHGNVKMGAKVAELAMEMKPELSGSYVQMYNIYAEKEEWDKAA 697

Query: 558 VVREKIKTRSVIKLPGYSWIEV---EKKAHM--FVGGDNNCHPEQPIIMKMLE 605
            +R+ ++ ++V K  G+SWI+V   E    M  F  GD + HP+   I +M+E
Sbjct: 698 EIRKAMRKKNVSKEAGFSWIDVGDTEGSLTMQGFSSGDKS-HPKSDEIYRMVE 749



 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 5/158 (3%)

Query: 353 GRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQ 412
           G Q+H     S F   + V++A++ MY K G    A  IF      DVV WN++++G+  
Sbjct: 95  GCQIHGFSTTSGFTSFVCVSNAVMGMYRKAGRFDNALCIFENLVDPDVVSWNTILSGFDD 154

Query: 413 HGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIE 472
           + +   ALN    M  +GV  D  ++   LS C  S     G ++ +S   K  +E  + 
Sbjct: 155 NQI---ALNFVVRMKSAGVVFDAFTYSTALSFCVGSEGFLLGLQL-QSTVVKTGLESDLV 210

Query: 473 HYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLL 510
                + +  R+G    A  + ++M  + D I W SLL
Sbjct: 211 VGNSFITMYSRSGSFRGARRVFDEMSFK-DMISWNSLL 247


>AT2G04860.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:1706787-1708865 REVERSE
           LENGTH=692
          Length = 692

 Score =  260 bits (664), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 178/600 (29%), Positives = 286/600 (47%), Gaps = 54/600 (9%)

Query: 16  RFQCTSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAY-------------- 61
           RF    T  ++ Y + G + +A+ +FDE P   R T  WNA++  Y              
Sbjct: 83  RFVYVKTSLLNLYLKKGCVTSAQMLFDEMPE--RDTVVWNALICGYSRNGYECDAWKLFI 140

Query: 62  --FQAHQPHQAVTLFETTP---EKNIVSW--------------------NGMVSGFVKNG 96
              Q      A TL    P   +   VS                     N ++S + K  
Sbjct: 141 VMLQQGFSPSATTLVNLLPFCGQCGFVSQGRSVHGVAAKSGLELDSQVKNALISFYSKCA 200

Query: 97  MVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLK 156
            +  A  +F  M  ++ VSW +M+  Y Q G  EEA  +F  M EKNV    V +  LL 
Sbjct: 201 ELGSAEVLFREMKDKSTVSWNTMIGAYSQSGLQEEAITVFKNMFEKNVEISPVTIINLLS 260

Query: 157 DSRVEDARKLFDMMP--VKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVS 214
                +      +    V D+  VT+++  Y   G L  A  L+    + ++V  T++VS
Sbjct: 261 AHVSHEPLHCLVVKCGMVNDISVVTSLVCAYSRCGCLVSAERLYASAKQDSIVGLTSIVS 320

Query: 215 GYARNRRVDVARKLF----EVMPERNEVSWTAMLMGYTHS-----GRMREASEFFDAMPV 265
            YA    +D+A   F    ++  + + V+   +L G   S     G           +  
Sbjct: 321 CYAEKGDMDIAVVYFSKTRQLCMKIDAVALVGILHGCKKSSHIDIGMSLHGYAIKSGLCT 380

Query: 266 KPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARM 325
           K +V    + M   FD DV+    +FE+++E    +W+++I    + G    A  +F +M
Sbjct: 381 KTLVVNGLITMYSKFD-DVETVLFLFEQLQETPLISWNSVISGCVQSGRASTAFEVFHQM 439

Query: 326 QREGAAL-NFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGD 384
              G  L +                 + G+++H   +R+ F+ + +V +ALI MY KCG+
Sbjct: 440 MLTGGLLPDAITIASLLAGCSQLCCLNLGKELHGYTLRNNFENENFVCTALIDMYAKCGN 499

Query: 385 LVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSA 444
            V+A+ +F          WNSMI+GYS  GL   AL+ + +M   G+ PD+I+F+GVLSA
Sbjct: 500 EVQAESVFKSIKAPCTATWNSMISGYSLSGLQHRALSCYLEMREKGLKPDEITFLGVLSA 559

Query: 445 CSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAI 504
           C++ G V EG+  F +M  ++ + P ++HYA MV LLGRA    +A+ ++ KM ++PD+ 
Sbjct: 560 CNHGGFVDEGKICFRAMIKEFGISPTLQHYALMVGLLGRACLFTEALYLIWKMDIKPDSA 619

Query: 505 VWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIK 564
           VWG+LL AC  H +L++ E    K+  L+ KN G YVL+S++YA++  W+DV  VR  +K
Sbjct: 620 VWGALLSACIIHRELEVGEYVARKMFMLDYKNGGLYVLMSNLYATEAMWDDVVRVRNMMK 679



 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 106/485 (21%), Positives = 203/485 (41%), Gaps = 26/485 (5%)

Query: 41  FDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAE 100
           F  +  +  TT+S+N+     F+         L ++  ++ +     +++ ++K G V  
Sbjct: 49  FTMSIFLQATTTSFNS-----FKLQVEQVQTHLTKSGLDRFVYVKTSLLNLYLKKGCVTS 103

Query: 101 ARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLL----K 156
           A+ +FD MP R+ V W +++ GY + G   +A +LF  M ++        L  LL    +
Sbjct: 104 AQMLFDEMPERDTVVWNALICGYSRNGYECDAWKLFIVMLQQGFSPSATTLVNLLPFCGQ 163

Query: 157 DSRVEDARKLFDMMPVK----DVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTM 212
              V   R +  +        D      +I  Y +   L  A  LF EM  ++ V+W TM
Sbjct: 164 CGFVSQGRSVHGVAAKSGLELDSQVKNALISFYSKCAELGSAEVLFREMKDKSTVSWNTM 223

Query: 213 VSGYARNRRVDVARKLFEVMPERN-EVSWTAML-MGYTHSGRMREASEFFDAMPVKPVVA 270
           +  Y+++   + A  +F+ M E+N E+S   ++ +   H               V  +  
Sbjct: 224 IGAYSQSGLQEEAITVFKNMFEKNVEISPVTIINLLSAHVSHEPLHCLVVKCGMVNDISV 283

Query: 271 CNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGA 330
              ++  +   G +  A+ ++   ++      ++++  Y  KG    A+  F++ ++   
Sbjct: 284 VTSLVCAYSRCGCLVSAERLYASAKQDSIVGLTSIVSCYAEKGDMDIAVVYFSKTRQLCM 343

Query: 331 ALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKW 390
            ++                 D G  +H   ++S       V + LITMY K  D+    +
Sbjct: 344 KIDAVALVGILHGCKKSSHIDIGMSLHGYAIKSGLCTKTLVVNGLITMYSKFDDVETVLF 403

Query: 391 IFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLS-GVPPDDISFIGVLSACSYSG 449
           +F +     ++ WNS+I+G  Q G    A  VF  M L+ G+ PD I+   +L+ CS   
Sbjct: 404 LFEQLQETPLISWNSVISGCVQSGRASTAFEVFHQMMLTGGLLPDAITIASLLAGCSQLC 463

Query: 450 KVKEGREIFESMKCKYQVEPGI--EHYAC--MVDLLGRAGQVNDAVEIVEKMPMEPDAIV 505
            +  G+E+       Y +      E++ C  ++D+  + G    A E V K    P    
Sbjct: 464 CLNLGKELH-----GYTLRNNFENENFVCTALIDMYAKCGNEVQA-ESVFKSIKAPCTAT 517

Query: 506 WGSLL 510
           W S++
Sbjct: 518 WNSMI 522



 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 91/182 (50%), Gaps = 5/182 (2%)

Query: 355 QVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHG 414
           QV   L +S  D+ +YV ++L+ +Y+K G +  A+ +F+  P +D V+WN++I GYS++G
Sbjct: 71  QVQTHLTKSGLDRFVYVKTSLLNLYLKKGCVTSAQMLFDEMPERDTVVWNALICGYSRNG 130

Query: 415 LGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHY 474
              +A  +F  M   G  P   + + +L  C   G V +GR +   +  K  +E   +  
Sbjct: 131 YECDAWKLFIVMLQQGFSPSATTLVNLLPFCGQCGFVSQGRSV-HGVAAKSGLELDSQVK 189

Query: 475 ACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEP 534
             ++    +  ++  A E++ +   +   + W +++GA   + +  L E A+     +  
Sbjct: 190 NALISFYSKCAELGSA-EVLFREMKDKSTVSWNTMIGA---YSQSGLQEEAITVFKNMFE 245

Query: 535 KN 536
           KN
Sbjct: 246 KN 247


>AT3G25060.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:9128516-9130321 FORWARD
           LENGTH=601
          Length = 601

 Score =  259 bits (661), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 161/535 (30%), Positives = 277/535 (51%), Gaps = 20/535 (3%)

Query: 96  GMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM------PEKNVVSWTV 149
           G ++ AR+VFD +P R V  + SM+  Y +  N +E  RL+ +M      P+ +  + T+
Sbjct: 64  GEISYARKVFDELPQRGVSVYNSMIVVYSRGKNPDEVLRLYDQMIAEKIQPDSSTFTMTI 123

Query: 150 --MLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVV 207
              L GL+ +       K  D     DV   ++++  Y + G+++EA  LF +M KR+V+
Sbjct: 124 KACLSGLVLEKGEAVWCKAVDFGYKNDVFVCSSVLNLYMKCGKMDEAEVLFGKMAKRDVI 183

Query: 208 TWTTMVSGYARNRRVDVARKLFEVMPE----RNEVSWTAML-----MGYTHSGRMREASE 258
            WTTMV+G+A+  +   A + +  M      R+ V    +L     +G T  GR      
Sbjct: 184 CWTTMVTGFAQAGKSLKAVEFYREMQNEGFGRDRVVMLGLLQASGDLGDTKMGRSVHGYL 243

Query: 259 FFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEA 318
           +   +P+  VV  + + M +   G ++ A  VF +M  +   +W ++I  + + G   +A
Sbjct: 244 YRTGLPMNVVVETSLVDM-YAKVGFIEVASRVFSRMMFKTAVSWGSLISGFAQNGLANKA 302

Query: 319 LGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITM 378
                 MQ  G   +                   GR VH  +++     D   A+AL+ M
Sbjct: 303 FEAVVEMQSLGFQPDLVTLVGVLVACSQVGSLKTGRLVHCYILKRHV-LDRVTATALMDM 361

Query: 379 YVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISF 438
           Y KCG L  ++ IF     KD+V WN+MI+ Y  HG G+E +++F  M  S + PD  +F
Sbjct: 362 YSKCGALSSSREIFEHVGRKDLVCWNTMISCYGIHGNGQEVVSLFLKMTESNIEPDHATF 421

Query: 439 IGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMP 498
             +LSA S+SG V++G+  F  M  KY+++P  +HY C++DLL RAG+V +A++++    
Sbjct: 422 ASLLSALSHSGLVEQGQHWFSVMINKYKIQPSEKHYVCLIDLLARAGRVEEALDMINSEK 481

Query: 499 MEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEV 558
           ++    +W +LL  C  H  L + ++A  K+ QL P + G   L+S+ +A+  +W++V  
Sbjct: 482 LDNALPIWVALLSGCINHRNLSVGDIAANKILQLNPDSIGIQTLVSNFFATANKWKEVAK 541

Query: 559 VREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRD 613
           VR+ ++  ++ K+PGYS IEV  +   F+  D + H E   ++++L  L   +RD
Sbjct: 542 VRKLMRNGAMEKVPGYSAIEVNGELRTFLMEDLS-HHEHYHMLQVLRNLKTEIRD 595



 Score =  119 bits (298), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 100/405 (24%), Positives = 174/405 (42%), Gaps = 61/405 (15%)

Query: 212 MVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAM---PVKP- 267
           +++   R   +  ARK+F+ +P+R    + +M++ Y+      E    +D M    ++P 
Sbjct: 56  LIASCGRIGEISYARKVFDELPQRGVSVYNSMIVVYSRGKNPDEVLRLYDQMIAEKIQPD 115

Query: 268 -------VVACNEMI------------MGFGFDGDV----------------DRAKAVFE 292
                  + AC   +            + FG+  DV                D A+ +F 
Sbjct: 116 SSTFTMTIKACLSGLVLEKGEAVWCKAVDFGYKNDVFVCSSVLNLYMKCGKMDEAEVLFG 175

Query: 293 KMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDH 352
           KM +RD   W+ M+  + + G  L+A+  +  MQ EG   +                   
Sbjct: 176 KMAKRDVICWTTMVTGFAQAGKSLKAVEFYREMQNEGFGRDRVVMLGLLQASGDLGDTKM 235

Query: 353 GRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQ 412
           GR VH  L R+    ++ V ++L+ MY K G +  A  +F+R   K  V W S+I+G++Q
Sbjct: 236 GRSVHGYLYRTGLPMNVVVETSLVDMYAKVGFIEVASRVFSRMMFKTAVSWGSLISGFAQ 295

Query: 413 HGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIE 472
           +GL  +A     +M   G  PD ++ +GVL ACS  G +K GR +      K  V   + 
Sbjct: 296 NGLANKAFEAVVEMQSLGFQPDLVTLVGVLVACSQVGSLKTGR-LVHCYILKRHVLDRVT 354

Query: 473 HYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTH--------MKLDLAEV 524
             A M D+  + G ++ + EI E +    D + W +++     H        + L + E 
Sbjct: 355 ATALM-DMYSKCGALSSSREIFEHVG-RKDLVCWNTMISCYGIHGNGQEVVSLFLKMTE- 411

Query: 525 AVEKLAQLEPKNAGPYVLLSHMYAS----KGR-WEDVEVVREKIK 564
                + +EP +A    LLS +  S    +G+ W  V + + KI+
Sbjct: 412 -----SNIEPDHATFASLLSALSHSGLVEQGQHWFSVMINKYKIQ 451



 Score = 97.4 bits (241), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 125/267 (46%), Gaps = 5/267 (1%)

Query: 273 EMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAAL 332
           ++I   G  G++  A+ VF+++ +R    +++MI VY R     E L L+ +M  E    
Sbjct: 55  DLIASCGRIGEISYARKVFDELPQRGVSVYNSMIVVYSRGKNPDEVLRLYDQMIAEKIQP 114

Query: 333 NFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIF 392
           +                 + G  V  + V   +  D++V S+++ +Y+KCG +  A+ +F
Sbjct: 115 DSSTFTMTIKACLSGLVLEKGEAVWCKAVDFGYKNDVFVCSSVLNLYMKCGKMDEAEVLF 174

Query: 393 NRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVK 452
            +   +DV+ W +M+TG++Q G   +A+  +R+M   G   D +  +G+L A    G  K
Sbjct: 175 GKMAKRDVICWTTMVTGFAQAGKSLKAVEFYREMQNEGFGRDRVVMLGLLQASGDLGDTK 234

Query: 453 EGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGA 512
            GR +   +  +  +   +     +VD+  + G +  A  +  +M M   A+ WGSL+  
Sbjct: 235 MGRSVHGYLY-RTGLPMNVVVETSLVDMYAKVGFIEVASRVFSRM-MFKTAVSWGSLISG 292

Query: 513 CRTHMKLDLAEVAVEKLAQLEPKNAGP 539
              +    LA  A E + +++     P
Sbjct: 293 FAQN---GLANKAFEAVVEMQSLGFQP 316



 Score = 97.1 bits (240), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 103/480 (21%), Positives = 198/480 (41%), Gaps = 70/480 (14%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNI-- 82
           I+   RIG+I  ARKVFDE P   R  S +N+M+  Y +   P + + L++    + I  
Sbjct: 57  IASCGRIGEISYARKVFDELP--QRGVSVYNSMIVVYSRGKNPDEVLRLYDQMIAEKIQP 114

Query: 83  ------VSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLF 136
                 ++    +SG V     A   +  D     +V   +S++  Y++ G ++EAE LF
Sbjct: 115 DSSTFTMTIKACLSGLVLEKGEAVWCKAVDFGYKNDVFVCSSVLNLYMKCGKMDEAEVLF 174

Query: 137 WRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPV----KDVVAVTNMIGGYCEEGRLE 192
            +M +++V+ WT M+ G  +  +   A + +  M      +D V +  ++    + G  +
Sbjct: 175 GKMAKRDVICWTTMVTGFAQAGKSLKAVEFYREMQNEGFGRDRVVMLGLLQASGDLGDTK 234

Query: 193 EARA----LFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYT 248
             R+    L+      NVV  T++V  YA+   ++VA ++F  M  +  VSW +++ G+ 
Sbjct: 235 MGRSVHGYLYRTGLPMNVVVETSLVDMYAKVGFIEVASRVFSRMMFKTAVSWGSLISGFA 294

Query: 249 HSGRMREASEFFDAMP-----------VKPVVACNE------------------------ 273
            +G   +A E    M            V  +VAC++                        
Sbjct: 295 QNGLANKAFEAVVEMQSLGFQPDLVTLVGVLVACSQVGSLKTGRLVHCYILKRHVLDRVT 354

Query: 274 ---MIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGA 330
              ++  +   G +  ++ +FE +  +D   W+ MI  Y   G   E + LF +M     
Sbjct: 355 ATALMDMYSKCGALSSSREIFEHVGRKDLVCWNTMISCYGIHGNGQEVVSLFLKMTESNI 414

Query: 331 ALNFPXXXXXXXXXXXXXXXDHGRQVHARLV---RSEFDQDLYVASALITMYVKCGDLVR 387
             +                 + G+   + ++   + +  +  YV   LI +  + G +  
Sbjct: 415 EPDHATFASLLSALSHSGLVEQGQHWFSVMINKYKIQPSEKHYV--CLIDLLARAGRVEE 472

Query: 388 AKWIFNRYPLKDVV-MWNSMITGYSQH---GLGEEALNVFRDMCLSGVPPDDISFIGVLS 443
           A  + N   L + + +W ++++G   H    +G+ A N    +      PD I    ++S
Sbjct: 473 ALDMINSEKLDNALPIWVALLSGCINHRNLSVGDIAANKILQL-----NPDSIGIQTLVS 527



 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 77/160 (48%), Gaps = 3/160 (1%)

Query: 352 HGRQVHARLVRS-EFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGY 410
           H  Q+HA ++ +        ++  LI    + G++  A+ +F+  P + V ++NSMI  Y
Sbjct: 32  HITQIHAFVISTGNLLNGSSISRDLIASCGRIGEISYARKVFDELPQRGVSVYNSMIVVY 91

Query: 411 SQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPG 470
           S+    +E L ++  M    + PD  +F   + AC  SG V E  E        +  +  
Sbjct: 92  SRGKNPDEVLRLYDQMIAEKIQPDSSTFTMTIKAC-LSGLVLEKGEAVWCKAVDFGYKND 150

Query: 471 IEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLL 510
           +   + +++L  + G++++A  +  KM  + D I W +++
Sbjct: 151 VFVCSSVLNLYMKCGKMDEAEVLFGKMA-KRDVICWTTMV 189


>AT1G06140.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:1864796-1866472 FORWARD
           LENGTH=558
          Length = 558

 Score =  258 bits (659), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 168/520 (32%), Positives = 257/520 (49%), Gaps = 54/520 (10%)

Query: 113 VVSWTSMVRGYVQEGNVEEAERLFWRMP--EKNVVSWTVMLGGLLKDSRV--EDARKLFD 168
           VV  +S+   Y+Q   ++ A   F R+P  ++N  SW  +L G  K       D   L++
Sbjct: 39  VVLGSSLTNAYIQSNRLDFATSSFNRIPCWKRNRHSWNTILSGYSKSKTCCYSDVLLLYN 98

Query: 169 MM--------PVKDVVAVTNMIG-GYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARN 219
            M            V A+   +G G  E G L    A+ + + K + V   ++V  YA+ 
Sbjct: 99  RMRRHCDGVDSFNLVFAIKACVGLGLLENGILIHGLAMKNGLDKDDYVA-PSLVEMYAQL 157

Query: 220 RRVDVARKLFEVMPERNEVSWTAMLMGYTHSGR----------MREASEFFDAMPVKPVV 269
             ++ A+K+F+ +P RN V W  ++ GY    +          MR+     DA+ +  +V
Sbjct: 158 GTMESAQKVFDEIPVRNSVLWGVLMKGYLKYSKDPEVFRLFCLMRDTGLALDALTLICLV 217

Query: 270 -ACNEMIMG--------------FGFDGD---------------VDRAKAVFEKMRERDD 299
            AC  +  G              F    D               +D A+ +FE   +R+ 
Sbjct: 218 KACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFETSVDRNV 277

Query: 300 GTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHAR 359
             W+ +I  + +    +EA  LF +M RE    N                  HG+ VH  
Sbjct: 278 VMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRHGKSVHGY 337

Query: 360 LVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEA 419
           ++R+  + D    ++ I MY +CG++  A+ +F+  P ++V+ W+SMI  +  +GL EEA
Sbjct: 338 MIRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDMMPERNVISWSSMINAFGINGLFEEA 397

Query: 420 LNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVD 479
           L+ F  M    V P+ ++F+ +LSACS+SG VKEG + FESM   Y V P  EHYACMVD
Sbjct: 398 LDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGVVPEEEHYACMVD 457

Query: 480 LLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGP 539
           LLGRAG++ +A   ++ MP++P A  WG+LL ACR H ++DLA    EKL  +EP+ +  
Sbjct: 458 LLGRAGEIGEAKSFIDNMPVKPMASAWGALLSACRIHKEVDLAGEIAEKLLSMEPEKSSV 517

Query: 540 YVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEV 579
           YVLLS++YA  G WE V  VR K+  +   K  G S  EV
Sbjct: 518 YVLLSNIYADAGMWEMVNCVRRKMGIKGYRKHVGQSATEV 557



 Score = 97.4 bits (241), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 155/365 (42%), Gaps = 60/365 (16%)

Query: 28  YARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQP-HQAVTLFETTPEKN---IV 83
           Y +  +++ A   F+  P   R   SWN +++ Y ++    +  V L      ++   + 
Sbjct: 49  YIQSNRLDFATSSFNRIPCWKRNRHSWNTILSGYSKSKTCCYSDVLLLYNRMRRHCDGVD 108

Query: 84  SWNGMVS-------GFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLF 136
           S+N + +       G ++NG++     + + +   + V+  S+V  Y Q G +E A+++F
Sbjct: 109 SFNLVFAIKACVGLGLLENGILIHGLAMKNGLDKDDYVA-PSLVEMYAQLGTMESAQKVF 167

Query: 137 WRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMP-----------VKDVVAVTNMIGG- 184
             +P +N V W V++ G LK S+  +  +LF +M            +  V A  N+  G 
Sbjct: 168 DEIPVRNSVLWGVLMKGYLKYSKDPEVFRLFCLMRDTGLALDALTLICLVKACGNVFAGK 227

Query: 185 ----------------------------YCEEGRLEEARALFDEMPKRNVVTWTTMVSGY 216
                                       Y +   L+ AR LF+    RNVV WTT++SG+
Sbjct: 228 VGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFETSVDRNVVMWTTLISGF 287

Query: 217 ARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAMPVKPV---- 268
           A+  R   A  LF  M       N+ +  A+L+  +  G +R        M    +    
Sbjct: 288 AKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDA 347

Query: 269 VACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQRE 328
           V     I  +   G++  A+ VF+ M ER+  +WS+MI  +   G   EAL  F +M+ +
Sbjct: 348 VNFTSFIDMYARCGNIQMARTVFDMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQ 407

Query: 329 GAALN 333
               N
Sbjct: 408 NVVPN 412



 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 150/342 (43%), Gaps = 64/342 (18%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLF----ETTPEK 80
           +  YA++G +E+A+KVFDE P   R +  W  ++  Y +  +  +   LF    +T    
Sbjct: 151 VEMYAQLGTMESAQKVFDEIP--VRNSVLWGVLMKGYLKYSKDPEVFRLFCLMRDTGLAL 208

Query: 81  NIVSWNGMVSG------------------------------------FVKNGMVAEARRV 104
           + ++   +V                                      +VK  ++  AR++
Sbjct: 209 DALTLICLVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKL 268

Query: 105 FDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKD----SRV 160
           F+    RNVV WT+++ G+ +     EA  LF +M  ++++     L  +L        +
Sbjct: 269 FETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSL 328

Query: 161 EDARKLFDMMPVK----DVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGY 216
              + +   M       D V  T+ I  Y   G ++ AR +FD MP+RNV++W++M++ +
Sbjct: 329 RHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDMMPERNVISWSSMINAF 388

Query: 217 ARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAM-------PV 265
             N   + A   F  M  +    N V++ ++L   +HSG ++E  + F++M       P 
Sbjct: 389 GINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGVVPE 448

Query: 266 KPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGT-WSAMI 306
           +   AC  M+   G  G++  AK+  + M  +   + W A++
Sbjct: 449 EEHYAC--MVDLLGRAGEIGEAKSFIDNMPVKPMASAWGALL 488



 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 111/267 (41%), Gaps = 55/267 (20%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNI-- 82
           I  Y +   ++NARK+F+ +  + R    W  +++ + +  +  +A  LF     ++I  
Sbjct: 253 IDMYVKCRLLDNARKLFETS--VDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRESILP 310

Query: 83  -------------------------------------VSWNGMVSGFVKNGMVAEARRVF 105
                                                V++   +  + + G +  AR VF
Sbjct: 311 NQCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVF 370

Query: 106 DAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLK----DSRVE 161
           D MP RNV+SW+SM+  +   G  EEA   F +M  +NVV  +V    LL        V+
Sbjct: 371 DMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVK 430

Query: 162 DARKLFDMMP-----VKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVT-WTTMVSG 215
           +  K F+ M      V +      M+      G + EA++  D MP + + + W  ++S 
Sbjct: 431 EGWKQFESMTRDYGVVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASAWGALLSA 490

Query: 216 YARNRRVD----VARKLFEVMPERNEV 238
              ++ VD    +A KL  + PE++ V
Sbjct: 491 CRIHKEVDLAGEIAEKLLSMEPEKSSV 517



 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/164 (21%), Positives = 82/164 (50%), Gaps = 6/164 (3%)

Query: 351 DHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPL--KDVVMWNSMIT 408
           +H +QVHA+++   F+ ++ + S+L   Y++   L  A   FNR P   ++   WN++++
Sbjct: 21  NHTQQVHAKVIIHGFEDEVVLGSSLTNAYIQSNRLDFATSSFNRIPCWKRNRHSWNTILS 80

Query: 409 GYSQHGLG--EEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQ 466
           GYS+       + L ++  M       D  + +  + AC   G ++ G  +   +  K  
Sbjct: 81  GYSKSKTCCYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLENGI-LIHGLAMKNG 139

Query: 467 VEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLL 510
           ++        +V++  + G +  A ++ +++P+  ++++WG L+
Sbjct: 140 LDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVR-NSVLWGVLM 182


>AT1G28690.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:10080042-10081604 REVERSE
           LENGTH=520
          Length = 520

 Score =  257 bits (657), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 146/429 (34%), Positives = 238/429 (55%), Gaps = 15/429 (3%)

Query: 163 ARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMP----KRNVVTWTTMV-SGYA 217
           AR++FD +P   + A   MI GY + G ++E   L   M     K +  T + ++ +  +
Sbjct: 88  ARQVFDELPKPTLSAYNYMISGYLKHGLVKELLLLVQRMSYSGEKADGYTLSMVLKASNS 147

Query: 218 RNRRVDVARKLFEVMPER--------NEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVV 269
           R   + + R L  ++  R        ++V  TA++  Y  SG++  A   F+ M  + VV
Sbjct: 148 RGSTMILPRSLCRLVHARIIKCDVELDDVLITALVDTYVKSGKLESARTVFETMKDENVV 207

Query: 270 ACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELE-ALGLFARMQRE 328
            C  MI G+   G V+ A+ +F   + +D   ++AM++ + R G   + ++ ++  MQR 
Sbjct: 208 CCTSMISGYMNQGFVEDAEEIFNTTKVKDIVVYNAMVEGFSRSGETAKRSVDMYISMQRA 267

Query: 329 GAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRA 388
           G   N                 + G+QVHA++++S     + + S+L+ MY KCG +  A
Sbjct: 268 GFHPNISTFASVIGACSVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDA 327

Query: 389 KWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYS 448
           + +F++   K+V  W SMI GY ++G  EEAL +F  M    + P+ ++F+G LSACS+S
Sbjct: 328 RRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGALSACSHS 387

Query: 449 GKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGS 508
           G V +G EIFESM+  Y ++P +EHYAC+VDL+GRAG +N A E    MP  PD+ +W +
Sbjct: 388 GLVDKGYEIFESMQRDYSMKPKMEHYACIVDLMGRAGDLNKAFEFARAMPERPDSDIWAA 447

Query: 509 LLGACRTHMKLDLAEVAVEKLAQLEP-KNAGPYVLLSHMYASKGRWEDVEVVREKIKTRS 567
           LL +C  H  ++LA +A  +L +L   K  G Y+ LS++YAS  +W++V  +RE +K R 
Sbjct: 448 LLSSCNLHGNVELASIAASELFKLNADKRPGAYLALSNVYASNDKWDNVSKIREVMKRRR 507

Query: 568 VIKLPGYSW 576
           + K  G SW
Sbjct: 508 ISKTIGRSW 516



 Score =  105 bits (263), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 142/275 (51%), Gaps = 27/275 (9%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVV 114
            A+V  Y ++ +   A T+FET  ++N+V    M+SG++  G V +A  +F+   V+++V
Sbjct: 179 TALVDTYVKSGKLESARTVFETMKDENVVCCTSMISGYMNQGFVEDAEEIFNTTKVKDIV 238

Query: 115 SWTSMVRGYVQEGNVEEAER---LFWRMPEK----NVVSWTVMLGGLLKDSRVEDARKLF 167
            + +MV G+ + G  E A+R   ++  M       N+ ++  ++G     +  E  +++ 
Sbjct: 239 VYNAMVEGFSRSG--ETAKRSVDMYISMQRAGFHPNISTFASVIGACSVLTSHEVGQQVH 296

Query: 168 DMMPVKDVVA----VTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVD 223
             +    V       ++++  Y + G + +AR +FD+M ++NV +WT+M+ GY +N   +
Sbjct: 297 AQIMKSGVYTHIKMGSSLLDMYAKCGGINDARRVFDQMQEKNVFSWTSMIDGYGKNGNPE 356

Query: 224 VARKLFEVMP----ERNEVSWTAMLMGYTHSGRMREASEFFDAM----PVKPVV---ACN 272
            A +LF  M     E N V++   L   +HSG + +  E F++M     +KP +   AC 
Sbjct: 357 EALELFTRMKEFRIEPNYVTFLGALSACSHSGLVDKGYEIFESMQRDYSMKPKMEHYACI 416

Query: 273 EMIMGFGFDGDVDRAKAVFEKMRER-DDGTWSAMI 306
             +MG    GD+++A      M ER D   W+A++
Sbjct: 417 VDLMGRA--GDLNKAFEFARAMPERPDSDIWAALL 449



 Score =  100 bits (248), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 164/377 (43%), Gaps = 55/377 (14%)

Query: 93  VKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLG 152
           +K G ++ AR+VFD +P   + ++  M+ GY++ G V+E   L  RM      +    L 
Sbjct: 80  LKCGCLSYARQVFDELPKPTLSAYNYMISGYLKHGLVKELLLLVQRMSYSGEKADGYTLS 139

Query: 153 GLLKDSRVEDA-----RKLFDMMPVK--------DVVAVTNMIGGYCEEGRLEEARALFD 199
            +LK S    +     R L  ++  +        D V +T ++  Y + G+LE AR +F+
Sbjct: 140 MVLKASNSRGSTMILPRSLCRLVHARIIKCDVELDDVLITALVDTYVKSGKLESARTVFE 199

Query: 200 EMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGR------- 252
            M   NVV  T+M+SGY     V+ A ++F     ++ V + AM+ G++ SG        
Sbjct: 200 TMKDENVVCCTSMISGYMNQGFVEDAEEIFNTTKVKDIVVYNAMVEGFSRSGETAKRSVD 259

Query: 253 ----MREA------SEFFDAMPVKPVVACNEM-------IMGFG-----------FD--- 281
               M+ A      S F   +    V+  +E+       IM  G            D   
Sbjct: 260 MYISMQRAGFHPNISTFASVIGACSVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYA 319

Query: 282 --GDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXX 339
             G ++ A+ VF++M+E++  +W++MI  Y + G   EAL LF RM+      N+     
Sbjct: 320 KCGGINDARRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYVTFLG 379

Query: 340 XXXXXXXXXXXDHGRQVHARLVRS-EFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLK 398
                      D G ++   + R       +   + ++ +  + GDL +A       P +
Sbjct: 380 ALSACSHSGLVDKGYEIFESMQRDYSMKPKMEHYACIVDLMGRAGDLNKAFEFARAMPER 439

Query: 399 -DVVMWNSMITGYSQHG 414
            D  +W ++++  + HG
Sbjct: 440 PDSDIWAALLSSCNLHG 456



 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 127/321 (39%), Gaps = 88/321 (27%)

Query: 353 GRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQ 412
           G+++HA ++++ F  DL ++  L+ +++KCG L  A+ +F+  P   +  +N MI+GY +
Sbjct: 53  GKKIHADIIKTGFQPDLNISIKLLILHLKCGCLSYARQVFDELPKPTLSAYNYMISGYLK 112

Query: 413 HGLGEEALNVFRDMCLSG----------------------------------------VP 432
           HGL +E L + + M  SG                                        V 
Sbjct: 113 HGLVKELLLLVQRMSYSGEKADGYTLSMVLKASNSRGSTMILPRSLCRLVHARIIKCDVE 172

Query: 433 PDDISFIGVLSACSYSGKVKEGREIFESMK-----CKYQVEPG----------------- 470
            DD+    ++     SGK++  R +FE+MK     C   +  G                 
Sbjct: 173 LDDVLITALVDTYVKSGKLESARTVFETMKDENVVCCTSMISGYMNQGFVEDAEEIFNTT 232

Query: 471 ----IEHYACMVDLLGRAGQVN----DAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLA 522
               I  Y  MV+   R+G+      D    +++    P+   + S++GAC     L   
Sbjct: 233 KVKDIVVYNAMVEGFSRSGETAKRSVDMYISMQRAGFHPNISTFASVIGACSV---LTSH 289

Query: 523 EVAVEKLAQLEPKNAGPYV----LLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIE 578
           EV  +  AQ+       ++     L  MYA  G   D   V ++++ ++V     +SW  
Sbjct: 290 EVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDARRVFDQMQEKNV-----FSWTS 344

Query: 579 VEKKAHMFVGGDNNCHPEQPI 599
                 M  G   N +PE+ +
Sbjct: 345 ------MIDGYGKNGNPEEAL 359



 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 110/238 (46%), Gaps = 24/238 (10%)

Query: 47  IHRTTSSWNAMVAA--YFQAHQPHQAV--TLFETTPEKNIVSWNGMVSGFVKNGMVAEAR 102
            H   S++ +++ A     +H+  Q V   + ++    +I   + ++  + K G + +AR
Sbjct: 269 FHPNISTFASVIGACSVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDAR 328

Query: 103 RVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMP----EKNVVSWTVMLGGLLKDS 158
           RVFD M  +NV SWTSM+ GY + GN EEA  LF RM     E N V++   L       
Sbjct: 329 RVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGALSACSHSG 388

Query: 159 RVEDARKLFDMM--------PVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKR-NVVTW 209
            V+   ++F+ M         ++    + +++G     G L +A      MP+R +   W
Sbjct: 389 LVDKGYEIFESMQRDYSMKPKMEHYACIVDLMG---RAGDLNKAFEFARAMPERPDSDIW 445

Query: 210 TTMVSGYARNRRVDV----ARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAM 263
             ++S    +  V++    A +LF++  ++   ++ A+   Y  + +    S+  + M
Sbjct: 446 AALLSSCNLHGNVELASIAASELFKLNADKRPGAYLALSNVYASNDKWDNVSKIREVM 503


>AT2G22410.1 | Symbols: SLO1 | SLOW GROWTH 1 | chr2:9509035-9511080
           FORWARD LENGTH=681
          Length = 681

 Score =  257 bits (656), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 153/463 (33%), Positives = 249/463 (53%), Gaps = 16/463 (3%)

Query: 160 VEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNV----VTWTTMVSG 215
           +E+ARK+FD  PV+D+V+   +I GY + G  E+A  ++  M    V    VT   +VS 
Sbjct: 207 MENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSS 266

Query: 216 YARNRRVDVARKLFEVMPE---RNEVSWTAMLMG-YTHSGRMREASEFFDAMPVKPVVAC 271
            +    ++  ++ +E + E   R  +     LM  ++  G + EA   FD +  + +V+ 
Sbjct: 267 CSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSW 326

Query: 272 NEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMI--KVYERKGFELEALGLFARMQREG 329
             MI G+   G +D ++ +F+ M E+D   W+AMI   V  ++G   +AL LF  MQ   
Sbjct: 327 TTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRG--QDALALFQEMQTSN 384

Query: 330 AALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAK 389
              +                 D G  +H  + +     ++ + ++L+ MY KCG++  A 
Sbjct: 385 TKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEAL 444

Query: 390 WIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSG 449
            +F+    ++ + + ++I G + HG    A++ F +M  +G+ PD+I+FIG+LSAC + G
Sbjct: 445 SVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGG 504

Query: 450 KVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSL 509
            ++ GR+ F  MK ++ + P ++HY+ MVDLLGRAG + +A  ++E MPME DA VWG+L
Sbjct: 505 MIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGAL 564

Query: 510 LGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVI 569
           L  CR H  ++L E A +KL +L+P ++G YVLL  MY     WED +  R  +  R V 
Sbjct: 565 LFGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVE 624

Query: 570 KLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLR 612
           K+PG S IEV      F+  D +  PE     K+ +RL  L R
Sbjct: 625 KIPGCSSIEVNGIVCEFIVRDKS-RPESE---KIYDRLHCLGR 663



 Score =  120 bits (301), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 171/389 (43%), Gaps = 58/389 (14%)

Query: 86  NGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV- 144
           N  +  F   G +  AR+VFD  PVR++VSW  ++ GY + G  E+A  ++  M  + V 
Sbjct: 195 NASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVK 254

Query: 145 ---------VSWTVMLGGLLKDSRVEDARKLFDM-MPVKDVVAVTNMIGGYCEEGRLEEA 194
                    VS   MLG L +     +  K   + M +  V A+ +M   + + G + EA
Sbjct: 255 PDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDM---FSKCGDIHEA 311

Query: 195 RALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMR 254
           R +FD + KR +V+WTTM+SGYAR   +DV+RKLF+ M E++ V W AM+ G   + R +
Sbjct: 312 RRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQ 371

Query: 255 EASEFFDAMP---VKP--------VVACNE----------------------------MI 275
           +A   F  M     KP        + AC++                            ++
Sbjct: 372 DALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLV 431

Query: 276 MGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFP 335
             +   G++  A +VF  ++ R+  T++A+I      G    A+  F  M   G A +  
Sbjct: 432 DMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEI 491

Query: 336 XXXXXXXXXXXXXXXDHGRQVHARL-VRSEFDQDLYVASALITMYVKCGDLVRAKWIFNR 394
                            GR   +++  R   +  L   S ++ +  + G L  A  +   
Sbjct: 492 TFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMES 551

Query: 395 YPLK-DVVMWNSMITGYSQHG---LGEEA 419
            P++ D  +W +++ G   HG   LGE+A
Sbjct: 552 MPMEADAAVWGALLFGCRMHGNVELGEKA 580



 Score =  119 bits (299), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 97/380 (25%), Positives = 169/380 (44%), Gaps = 63/380 (16%)

Query: 12  MVQVRFQCTS---TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPH 68
           ++++R +  S     +I  +A  G +ENARKVFDE+P   R   SWN ++  Y +  +  
Sbjct: 182 VLKLRLELVSHVHNASIHMFASCGDMENARKVFDESP--VRDLVSWNCLINGYKKIGEAE 239

Query: 69  QAVTLFETTPEKNI----VSWNGMVSG--------------------------------- 91
           +A+ +++    + +    V+  G+VS                                  
Sbjct: 240 KAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALM 299

Query: 92  --FVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTV 149
             F K G + EARR+FD +  R +VSWT+M+ GY + G ++ + +LF  M EK+VV W  
Sbjct: 300 DMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNA 359

Query: 150 MLGGLLKDSRVEDARKLFDMMPVK----DVVAVTNMIGGYCEEGRLEEARALFDEMPKR- 204
           M+GG ++  R +DA  LF  M       D + + + +    + G L+    +   + K  
Sbjct: 360 MIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYS 419

Query: 205 ---NVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFD 261
              NV   T++V  YA+   +  A  +F  +  RN +++TA++ G    G    A  +F+
Sbjct: 420 LSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFN 479

Query: 262 AMPVKPVVACNE-----MIMGFGFDGDVDRAKAVFEKMRERDDGT-----WSAMIKVYER 311
            M +   +A +E     ++      G +   +  F +M+ R +       +S M+ +  R
Sbjct: 480 EM-IDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGR 538

Query: 312 KGFELEALGLFARMQREGAA 331
            G   EA  L   M  E  A
Sbjct: 539 AGLLEEADRLMESMPMEADA 558



 Score = 97.1 bits (240), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 152/350 (43%), Gaps = 46/350 (13%)

Query: 200 EMPKRNVVTWTTMVSGYARNRRVD--VARKLFEVMPERNEVSWTAMLMGYTHSGRMREAS 257
           E PK + + +  M+       R D      LF+V  +    S   M++G+    R+   S
Sbjct: 132 ENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILGHVLKLRLELVS 191

Query: 258 EFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELE 317
              +A            I  F   GD++ A+ VF++   RD  +W+ +I  Y++ G   +
Sbjct: 192 HVHNAS-----------IHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEK 240

Query: 318 ALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALIT 377
           A+ ++  M+ EG   +                 + G++ +  +  +     + + +AL+ 
Sbjct: 241 AIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMD 300

Query: 378 MYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGL---------------------- 415
           M+ KCGD+  A+ IF+    + +V W +MI+GY++ GL                      
Sbjct: 301 MFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAM 360

Query: 416 ---------GEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQ 466
                    G++AL +F++M  S   PD+I+ I  LSACS  G +  G  I   ++ KY 
Sbjct: 361 IGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIE-KYS 419

Query: 467 VEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTH 516
           +   +     +VD+  + G +++A+ +   +    +++ + +++G    H
Sbjct: 420 LSLNVALGTSLVDMYAKCGNISEALSVFHGIQTR-NSLTYTAIIGGLALH 468



 Score = 93.2 bits (230), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 125/257 (48%), Gaps = 10/257 (3%)

Query: 284 VDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXX---X 340
           +D +  + + +   +  +W+  I+ +       E+  L+ +M R G   + P        
Sbjct: 103 LDYSVKILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVL 162

Query: 341 XXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDV 400
                       G  +   +++   +   +V +A I M+  CGD+  A+ +F+  P++D+
Sbjct: 163 FKVCADLRLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDL 222

Query: 401 VMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFES 460
           V WN +I GY + G  E+A+ V++ M   GV PDD++ IG++S+CS  G +  G+E +E 
Sbjct: 223 VSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEY 282

Query: 461 MKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIV-WGSLLGACRTHMKL 519
           +K +  +   I     ++D+  + G +++A  I +   +E   IV W +++     + + 
Sbjct: 283 VK-ENGLRMTIPLVNALMDMFSKCGDIHEARRIFDN--LEKRTIVSWTTMISG---YARC 336

Query: 520 DLAEVAVEKLAQLEPKN 536
            L +V+ +    +E K+
Sbjct: 337 GLLDVSRKLFDDMEEKD 353


>AT3G50420.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:18710871-18713649 REVERSE
           LENGTH=794
          Length = 794

 Score =  256 bits (654), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 177/648 (27%), Positives = 312/648 (48%), Gaps = 65/648 (10%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAY------------------FQAHQ 66
           IS Y R G +E ARKVFD+ PH  R   S+NA+ +AY                  F+  +
Sbjct: 139 ISMYVRCGSLEQARKVFDKMPH--RNVVSYNALYSAYSRNPDFASYAFPLTTHMAFEYVK 196

Query: 67  PHQAV----------------------TLFETTPEKNIVSWNGMVSGFVKNGMVAEARRV 104
           P+ +                        + +     N+V    ++  +   G +  ARR+
Sbjct: 197 PNSSTFTSLVQVCAVLEDVLMGSSLNSQIIKLGYSDNVVVQTSVLGMYSSCGDLESARRI 256

Query: 105 FDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV----VSWTVMLGGLLKDSRV 160
           FD +  R+ V+W +M+ G ++   +E+    F  M    V     +++++L G  K    
Sbjct: 257 FDCVNNRDAVAWNTMIVGSLKNDKIEDGLMFFRNMLMSGVDPTQFTYSIVLNGCSKLGSY 316

Query: 161 EDARKLFDMMPVKDVVA---VTN-MIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGY 216
              + +   + V D +A   + N ++  YC  G + EA  +F  +   N+V+W +++SG 
Sbjct: 317 SLGKLIHARIIVSDSLADLPLDNALLDMYCSCGDMREAFYVFGRIHNPNLVSWNSIISGC 376

Query: 217 ARN----RRVDVARKLFEV-MPERNEVSWTAMLMGYTHSGRMREASEFFDAMPV----KP 267
           + N    + + + R+L  +  P  +E +++A +       R          +      + 
Sbjct: 377 SENGFGEQAMLMYRRLLRMSTPRPDEYTFSAAISATAEPERFVHGKLLHGQVTKLGYERS 436

Query: 268 VVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQR 327
           V     ++  +  + + + A+ VF+ M+ERD   W+ MI  + R G    A+  F  M R
Sbjct: 437 VFVGTTLLSMYFKNREAESAQKVFDVMKERDVVLWTEMIVGHSRLGNSELAVQFFIEMYR 496

Query: 328 EGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVR 387
           E    +                   G   H   +R+ FD  + V  AL+ MY K G    
Sbjct: 497 EKNRSDGFSLSSVIGACSDMAMLRQGEVFHCLAIRTGFDCVMSVCGALVDMYGKNGKYET 556

Query: 388 AKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSY 447
           A+ IF+     D+  WNSM+  YSQHG+ E+AL+ F  +  +G  PD ++++ +L+ACS+
Sbjct: 557 AETIFSLASNPDLKCWNSMLGAYSQHGMVEKALSFFEQILENGFMPDAVTYLSLLAACSH 616

Query: 448 SGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPM-EPDAIVW 506
            G   +G+ ++  MK +  ++ G +HY+CMV+L+ +AG V++A+E++E+ P     A +W
Sbjct: 617 RGSTLQGKFLWNQMK-EQGIKAGFKHYSCMVNLVSKAGLVDEALELIEQSPPGNNQAELW 675

Query: 507 GSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTR 566
            +LL AC     L +   A E++ +L+P++   ++LLS++YA  GRWEDV  +R KI+  
Sbjct: 676 RTLLSACVNTRNLQIGLYAAEQILKLDPEDTATHILLSNLYAVNGRWEDVAEMRRKIRGL 735

Query: 567 SVIKLPGYSWIEV-EKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRD 613
           +  K PG SWIEV      +F  GD + +PE  ++ +  + L+ L R+
Sbjct: 736 ASSKDPGLSWIEVNNNNTQVFSSGDQS-NPE--VVSQAQDELNRLKRN 780



 Score =  140 bits (352), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 122/478 (25%), Positives = 221/478 (46%), Gaps = 50/478 (10%)

Query: 86  NGMVSGFVKNGMVAEARRVFDAMPVRNVVSW--TSMVRGYVQEGNVEEAE-------RLF 136
           N ++S +V+   + +AR+VFD MP RN+V+    S V  YV  G+   ++       ++ 
Sbjct: 26  NNLISMYVRCSSLEQARKVFDKMPQRNIVTLFGLSAVFEYVSMGSSLHSQIIKLGSFQMI 85

Query: 137 WRMPEKNVVSWTVMLG-GLLKDSRVEDARKLFDMMPVKDVVAVT-------NMIGGYCEE 188
           + MP   + S  V L    +  + ++ AR++  ++      A T       N+I  Y   
Sbjct: 86  FFMPLNEIASSVVELTRKCVSITVLKRARQIHALVLTAGAGAATESPYANNNLISMYVRC 145

Query: 189 GRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMP-------ERNEVSWT 241
           G LE+AR +FD+MP RNVV++  + S Y+RN   D A   F +         + N  ++T
Sbjct: 146 GSLEQARKVFDKMPHRNVVSYNALYSAYSRNP--DFASYAFPLTTHMAFEYVKPNSSTFT 203

Query: 242 AM----------LMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVF 291
           ++          LMG + +      S+         VV    ++  +   GD++ A+ +F
Sbjct: 204 SLVQVCAVLEDVLMGSSLN------SQIIKLGYSDNVVVQTSVLGMYSSCGDLESARRIF 257

Query: 292 EKMRERDDGTWSAMIKVYERKGFELE-ALGLFARMQREGAALNFPXXXXXXXXXXXXXXX 350
           + +  RD   W+ MI V   K  ++E  L  F  M   G                     
Sbjct: 258 DCVNNRDAVAWNTMI-VGSLKNDKIEDGLMFFRNMLMSGVDPTQFTYSIVLNGCSKLGSY 316

Query: 351 DHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGY 410
             G+ +HAR++ S+   DL + +AL+ MY  CGD+  A ++F R    ++V WNS+I+G 
Sbjct: 317 SLGKLIHARIIVSDSLADLPLDNALLDMYCSCGDMREAFYVFGRIHNPNLVSWNSIISGC 376

Query: 411 SQHGLGEEALNVFRDMCLSGVP-PDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEP 469
           S++G GE+A+ ++R +     P PD+ +F   +SA +   +   G+ +      K   E 
Sbjct: 377 SENGFGEQAMLMYRRLLRMSTPRPDEYTFSAAISATAEPERFVHGK-LLHGQVTKLGYER 435

Query: 470 GIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVE 527
            +     ++ +  +  +   A ++ + M  E D ++W  ++     H +L  +E+AV+
Sbjct: 436 SVFVGTTLLSMYFKNREAESAQKVFDVMK-ERDVVLWTEMIVG---HSRLGNSELAVQ 489



 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 161/357 (45%), Gaps = 24/357 (6%)

Query: 177 AVTNMIGGYCEEGRLEEARALFDEMPKRNVVT---------WTTMVSG-YARNRRVDVAR 226
           A  N+I  Y     LE+AR +FD+MP+RN+VT         + +M S  +++  ++   +
Sbjct: 24  ANNNLISMYVRCSSLEQARKVFDKMPQRNIVTLFGLSAVFEYVSMGSSLHSQIIKLGSFQ 83

Query: 227 KLFEVMPERNEVS-----WTAMLMGYTHSGRMREASEFF----DAMPVKPVVACNEMIMG 277
            +F  MP  NE++      T   +  T   R R+              +   A N +I  
Sbjct: 84  MIF-FMP-LNEIASSVVELTRKCVSITVLKRARQIHALVLTAGAGAATESPYANNNLISM 141

Query: 278 FGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERK-GFELEALGLFARMQREGAALNFPX 336
           +   G +++A+ VF+KM  R+  +++A+   Y R   F   A  L   M  E    N   
Sbjct: 142 YVRCGSLEQARKVFDKMPHRNVVSYNALYSAYSRNPDFASYAFPLTTHMAFEYVKPNSST 201

Query: 337 XXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYP 396
                           G  +++++++  +  ++ V ++++ MY  CGDL  A+ IF+   
Sbjct: 202 FTSLVQVCAVLEDVLMGSSLNSQIIKLGYSDNVVVQTSVLGMYSSCGDLESARRIFDCVN 261

Query: 397 LKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGRE 456
            +D V WN+MI G  ++   E+ L  FR+M +SGV P   ++  VL+ CS  G    G+ 
Sbjct: 262 NRDAVAWNTMIVGSLKNDKIEDGLMFFRNMLMSGVDPTQFTYSIVLNGCSKLGSYSLGKL 321

Query: 457 IFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGAC 513
           I   +     +   +     ++D+    G + +A  +  ++   P+ + W S++  C
Sbjct: 322 IHARIIVSDSL-ADLPLDNALLDMYCSCGDMREAFYVFGRIH-NPNLVSWNSIISGC 376



 Score = 99.8 bits (247), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 85/364 (23%), Positives = 157/364 (43%), Gaps = 58/364 (15%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKN 81
           T  +  Y+  G +E+AR++FD     +R   +WN M+    +  +    +  F       
Sbjct: 238 TSVLGMYSSCGDLESARRIFDCVN--NRDAVAWNTMIVGSLKNDKIEDGLMFFRNMLMSG 295

Query: 82  I----VSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVS----WTSMVRGYVQEGNVEEAE 133
           +     +++ +++G  K G  +  + +   + V + ++      +++  Y   G++ EA 
Sbjct: 296 VDPTQFTYSIVLNGCSKLGSYSLGKLIHARIIVSDSLADLPLDNALLDMYCSCGDMREAF 355

Query: 134 RLFWRMPEKNVVSWTVMLGGLLKDSRVEDA----RKLFDM-MPVKDVVAVTNMIGGYCEE 188
            +F R+   N+VSW  ++ G  ++   E A    R+L  M  P  D    +  I    E 
Sbjct: 356 YVFGRIHNPNLVSWNSIISGCSENGFGEQAMLMYRRLLRMSTPRPDEYTFSAAISATAEP 415

Query: 189 GRLEEARALFDEMPK----RNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAML 244
            R    + L  ++ K    R+V   TT++S Y +NR  + A+K+F+VM ER+ V WT M+
Sbjct: 416 ERFVHGKLLHGQVTKLGYERSVFVGTTLLSMYFKNREAESAQKVFDVMKERDVVLWTEMI 475

Query: 245 MGYTHSGRMREASEFF----------DAMPVKPVV-ACNEMIM--------------GF- 278
           +G++  G    A +FF          D   +  V+ AC++M M              GF 
Sbjct: 476 VGHSRLGNSELAVQFFIEMYREKNRSDGFSLSSVIGACSDMAMLRQGEVFHCLAIRTGFD 535

Query: 279 -------------GFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARM 325
                        G +G  + A+ +F      D   W++M+  Y + G   +AL  F ++
Sbjct: 536 CVMSVCGALVDMYGKNGKYETAETIFSLASNPDLKCWNSMLGAYSQHGMVEKALSFFEQI 595

Query: 326 QREG 329
              G
Sbjct: 596 LENG 599


>AT3G18840.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:6496198-6498234 FORWARD
           LENGTH=678
          Length = 678

 Score =  255 bits (652), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 177/643 (27%), Positives = 310/643 (48%), Gaps = 62/643 (9%)

Query: 20  TSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFET-TP 78
           +S   ++ Y++ G +  AR VFDE   + R   SWNA++AAY + +   +A  LFE+   
Sbjct: 25  SSNQLVNLYSKSGLLREARNVFDEM--LERNVYSWNAVIAAYVKFNNVKEARELFESDNC 82

Query: 79  EKNIVSWNGMVSGFVK-NGMVAEARRVFDAMPVR-------NVVSWTSMVRGYVQEGNVE 130
           E++++++N ++SGF K +G  +EA  +F  M  +       +  + T+MV+   +  NV 
Sbjct: 83  ERDLITYNTLLSGFAKTDGCESEAIEMFGEMHRKEKDDIWIDDFTVTTMVKLSAKLTNVF 142

Query: 131 EAERLFWRMPEKNVVSWTVMLGGLL----KDSRVEDARKLFDMMPVK--DVVAVTNMIGG 184
             E+L   + +         +  L+    K  + ++   +F+   V+  D VA   MI  
Sbjct: 143 YGEQLHGVLVKTGNDGTKFAVSSLIHMYSKCGKFKEVCNIFNGSCVEFVDSVARNAMIAA 202

Query: 185 YCEEGRLEEARALFDEMPKRN-VVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAM 243
           YC EG +++A ++F   P+ N  ++W T+++GYA+N   + A K+  V  E N + W   
Sbjct: 203 YCREGDIDKALSVFWRNPELNDTISWNTLIAGYAQNGYEEEALKM-AVSMEENGLKWDEH 261

Query: 244 LMG----------------------------------------YTHSGRMREASEFFDAM 263
             G                                        Y   G M+ A       
Sbjct: 262 SFGAVLNVLSSLKSLKIGKEVHARVLKNGSYSNKFVSSGIVDVYCKCGNMKYAESAHLLY 321

Query: 264 PVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLF- 322
               + + + MI+G+   G +  AK +F+ + E++   W+AM   Y         L L  
Sbjct: 322 GFGNLYSASSMIVGYSSQGKMVEAKRLFDSLSEKNLVVWTAMFLGYLNLRQPDSVLELAR 381

Query: 323 ARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKC 382
           A +  E    +                 + G+++H   +R+    D  + +A + MY KC
Sbjct: 382 AFIANETNTPDSLVMVSVLGACSLQAYMEPGKEIHGHSLRTGILMDKKLVTAFVDMYSKC 441

Query: 383 GDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVL 442
           G++  A+ IF+    +D VM+N+MI G + HG   ++   F DM   G  PD+I+F+ +L
Sbjct: 442 GNVEYAERIFDSSFERDTVMYNAMIAGCAHHGHEAKSFQHFEDMTEGGFKPDEITFMALL 501

Query: 443 SACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKM-PMEP 501
           SAC + G V EG + F+SM   Y + P   HY CM+DL G+A +++ A+E++E +  +E 
Sbjct: 502 SACRHRGLVLEGEKYFKSMIEAYNISPETGHYTCMIDLYGKAYRLDKAIELMEGIDQVEK 561

Query: 502 DAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVRE 561
           DA++ G+ L AC  +   +L +   EKL  +E  N   Y+ +++ YAS GRW++++ +R 
Sbjct: 562 DAVILGAFLNACSWNKNTELVKEVEEKLLVIEGSNGSRYIQIANAYASSGRWDEMQRIRH 621

Query: 562 KIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKML 604
           +++ + +    G SW  ++K+ HMF   D + H E   I  ML
Sbjct: 622 QMRGKELEIFSGCSWANIDKQFHMFTSSDIS-HYETEAIYAML 663



 Score =  142 bits (359), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 118/482 (24%), Positives = 212/482 (43%), Gaps = 81/482 (16%)

Query: 83  VSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWR-MPE 141
           VS N +V+ + K+G++ EAR VFD M  RNV SW +++  YV+  NV+EA  LF     E
Sbjct: 24  VSSNQLVNLYSKSGLLREARNVFDEMLERNVYSWNAVIAAYVKFNNVKEARELFESDNCE 83

Query: 142 KNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEM 201
           ++++++  +L G  K    E                               EA  +F EM
Sbjct: 84  RDLITYNTLLSGFAKTDGCES------------------------------EAIEMFGEM 113

Query: 202 PKR-------NVVTWTTMVSGYARNRRVDVARKLFEVM----PERNEVSWTAMLMGYTHS 250
            ++       +  T TTMV   A+   V    +L  V+     +  + + ++++  Y+  
Sbjct: 114 HRKEKDDIWIDDFTVTTMVKLSAKLTNVFYGEQLHGVLVKTGNDGTKFAVSSLIHMYSKC 173

Query: 251 GRMREASEFFDAMPVKPV--VACNEMIMGFGFDGDVDRAKAVFEKMRERDDG-TWSAMIK 307
           G+ +E    F+   V+ V  VA N MI  +  +GD+D+A +VF +  E +D  +W+ +I 
Sbjct: 174 GKFKEVCNIFNGSCVEFVDSVARNAMIAAYCREGDIDKALSVFWRNPELNDTISWNTLIA 233

Query: 308 VYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQ 367
            Y + G+E EAL +   M+  G   +                   G++VHAR++++    
Sbjct: 234 GYAQNGYEEEALKMAVSMEENGLKWDEHSFGAVLNVLSSLKSLKIGKEVHARVLKNGSYS 293

Query: 368 DLYVASALITMYVKCGD-------------------------------LVRAKWIFNRYP 396
           + +V+S ++ +Y KCG+                               +V AK +F+   
Sbjct: 294 NKFVSSGIVDVYCKCGNMKYAESAHLLYGFGNLYSASSMIVGYSSQGKMVEAKRLFDSLS 353

Query: 397 LKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGV-PPDDISFIGVLSACSYSGKVKEGR 455
            K++V+W +M  GY      +  L + R    +    PD +  + VL ACS    ++ G+
Sbjct: 354 EKNLVVWTAMFLGYLNLRQPDSVLELARAFIANETNTPDSLVMVSVLGACSLQAYMEPGK 413

Query: 456 EIF-ESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACR 514
           EI   S++    ++  +      VD+  + G V  A  I +    E D +++ +++  C 
Sbjct: 414 EIHGHSLRTGILMDKKL--VTAFVDMYSKCGNVEYAERIFDS-SFERDTVMYNAMIAGCA 470

Query: 515 TH 516
            H
Sbjct: 471 HH 472


>AT3G02330.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:473881-476592 REVERSE
           LENGTH=903
          Length = 903

 Score =  255 bits (652), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 188/703 (26%), Positives = 331/703 (47%), Gaps = 91/703 (12%)

Query: 13  VQVRFQC-----TSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQP 67
           + VR  C      ++  +  YA+  +   + +VF   P   + + SW+A++A   Q +  
Sbjct: 205 IVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPE--KNSVSWSAIIAGCVQNNLL 262

Query: 68  HQAVTLFETTPEKNI-------------------------VSWNGMVSGFVKNGMV---- 98
             A+  F+   + N                          +  + + S F  +G+V    
Sbjct: 263 SLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTAT 322

Query: 99  ----------AEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWT 148
                      +A+ +FD     N  S+ +M+ GY QE +  +A  LF R+    +    
Sbjct: 323 LDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDE 382

Query: 149 VMLGGLLKDSRV----EDARKLFDMMPVK-----DVVAVTNMIGGYCEEGRLEEARALFD 199
           + L G+ +   +     +  +++ +  +K     DV      I  Y +   L EA  +FD
Sbjct: 383 ISLSGVFRACALVKGLSEGLQIYGL-AIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFD 441

Query: 200 EMPKRNVVTWTTMVSGYARNRRVDVARKLFEVM----PERNEVSWTAMLMGYTHS----G 251
           EM +R+ V+W  +++ + +N +      LF  M     E +E ++ ++L   T      G
Sbjct: 442 EMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTGGSLGYG 501

Query: 252 RMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDD--GT-------- 301
               +S     M     V C+ + M +   G ++ A+ +  +  +R +  GT        
Sbjct: 502 MEIHSSIVKSGMASNSSVGCSLIDM-YSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMH 560

Query: 302 ----------WSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXD 351
                     W+++I  Y  K    +A  LF RM   G   +                  
Sbjct: 561 NKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAG 620

Query: 352 HGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYS 411
            G+Q+HA++++ E   D+Y+ S L+ MY KCGDL  ++ +F +   +D V WN+MI GY+
Sbjct: 621 LGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYA 680

Query: 412 QHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGI 471
            HG GEEA+ +F  M L  + P+ ++FI +L AC++ G + +G E F  MK  Y ++P +
Sbjct: 681 HHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQL 740

Query: 472 EHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHM-KLDLAEVAVEKLA 530
            HY+ MVD+LG++G+V  A+E++ +MP E D ++W +LLG C  H   +++AE A   L 
Sbjct: 741 PHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALL 800

Query: 531 QLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGD 590
           +L+P+++  Y LLS++YA  G WE V  +R  ++   + K PG SW+E++ + H+F+ GD
Sbjct: 801 RLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGD 860

Query: 591 NNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLH-DVEEEEK 632
              HP      ++ E L  +  +     D SFV   +VEEE++
Sbjct: 861 -KAHPRWE---EIYEELGLIYSEMKPFDDSSFVRGVEVEEEDQ 899



 Score =  168 bits (426), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 119/465 (25%), Positives = 220/465 (47%), Gaps = 28/465 (6%)

Query: 50  TTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMP 109
           TT   N ++  Y  +     A  +F+  P +++VSWN M++G+ K+  + +A   F+ MP
Sbjct: 82  TTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMP 141

Query: 110 VRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLK-DSRVEDARKLFD 168
           VR+VVSW SM+ GY+Q G   ++  +F  M  + +         +LK  S +ED      
Sbjct: 142 VRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQ 201

Query: 169 MMPV-------KDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRR 221
           +  +        DVVA + ++  Y +  R  E+  +F  +P++N V+W+ +++G  +N  
Sbjct: 202 IHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNL 261

Query: 222 VDVARKLFEVMPERN----EVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMG 277
           + +A K F+ M + N    +  + ++L        +R   +   A  +K   A + ++  
Sbjct: 262 LSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQ-LHAHALKSDFAADGIVRT 320

Query: 278 FGFD-----GDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAAL 332
              D      ++  A+ +F+     +  +++AMI  Y ++    +AL LF R+   G   
Sbjct: 321 ATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGF 380

Query: 333 NFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIF 392
           +                   G Q++   ++S    D+ VA+A I MY KC  L  A  +F
Sbjct: 381 DEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVF 440

Query: 393 NRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVK 452
           +    +D V WN++I  + Q+G G E L +F  M  S + PD+ +F  +L AC+  G + 
Sbjct: 441 DEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACT-GGSLG 499

Query: 453 EGREIFESMKCKYQVEPGIEHYA----CMVDLLGRAGQVNDAVEI 493
            G EI  S+     V+ G+   +     ++D+  + G + +A +I
Sbjct: 500 YGMEIHSSI-----VKSGMASNSSVGCSLIDMYSKCGMIEEAEKI 539


>AT5G56310.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:22802322-22803914 FORWARD
           LENGTH=530
          Length = 530

 Score =  254 bits (650), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 131/370 (35%), Positives = 219/370 (59%), Gaps = 3/370 (0%)

Query: 241 TAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMR--ERD 298
           T ++  Y   G + +A + FD M VK V   N ++ G+G  G++D A+++ E M    R+
Sbjct: 155 TGLIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRN 214

Query: 299 DGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHA 358
           + +W+ +I  Y + G   EA+ +F RM  E    +                 + G ++ +
Sbjct: 215 EVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICS 274

Query: 359 RLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEE 418
            +     ++ + + +A+I MY K G++ +A  +F     ++VV W ++I G + HG G E
Sbjct: 275 YVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAE 334

Query: 419 ALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMV 478
           AL +F  M  +GV P+D++FI +LSACS+ G V  G+ +F SM+ KY + P IEHY CM+
Sbjct: 335 ALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMI 394

Query: 479 DLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAG 538
           DLLGRAG++ +A E+++ MP + +A +WGSLL A   H  L+L E A+ +L +LEP N+G
Sbjct: 395 DLLGRAGKLREADEVIKSMPFKANAAIWGSLLAASNVHHDLELGERALSELIKLEPNNSG 454

Query: 539 PYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQP 598
            Y+LL+++Y++ GRW++  ++R  +K   V K+ G S IEVE + + F+ GD   HP+  
Sbjct: 455 NYMLLANLYSNLGRWDESRMMRNMMKGIGVKKMAGESSIEVENRVYKFISGDLT-HPQVE 513

Query: 599 IIMKMLERLD 608
            I ++L+ +D
Sbjct: 514 RIHEILQEMD 523



 Score =  101 bits (252), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 101/384 (26%), Positives = 159/384 (41%), Gaps = 59/384 (15%)

Query: 96  GMVAEARRVFDAMPVRNVVSWTSMVRGY--VQEGNVEEAE----RLFWRMPEK-NVVSWT 148
           G +  A  VF   P  N     +M+R    + E N         R  W +  K +  ++ 
Sbjct: 61  GHLRYAYSVFTHQPCPNTYLHNTMIRALSLLDEPNAHSIAITVYRKLWALCAKPDTFTFP 120

Query: 149 VMLGGLLKDSRVEDARKLFDMMPV----KDVVAVTNMIGGYCEEGRLEEARALFDEMPKR 204
            +L   ++ S V   R++   + V      V  VT +I  Y   G L +AR +FDEM  +
Sbjct: 121 FVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKMFDEMLVK 180

Query: 205 NVVTWTTMVSGYARNRRVDVARKLFEVMP--ERNEVSWTAMLMGYTHSGRMREASEFFDA 262
           +V  W  +++GY +   +D AR L E+MP   RNEVSWT ++ GY  SGR  EA E F  
Sbjct: 181 DVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQR 240

Query: 263 MPVKPV-----------VAC----------------------------NEMIMGFGFDGD 283
           M ++ V            AC                            N +I  +   G+
Sbjct: 241 MLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGN 300

Query: 284 VDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXX 343
           + +A  VFE + ER+  TW+ +I      G   EAL +F RM + G   N          
Sbjct: 301 ITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSA 360

Query: 344 XXXXXXXDHGRQVHARLVRSEF--DQDLYVASALITMYVKCGDLVRAKWIFNRYPLK-DV 400
                  D G+++   + RS++    ++     +I +  + G L  A  +    P K + 
Sbjct: 361 CSHVGWVDLGKRLFNSM-RSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANA 419

Query: 401 VMWNSMITGYSQHG---LGEEALN 421
            +W S++   + H    LGE AL+
Sbjct: 420 AIWGSLLAASNVHHDLELGERALS 443



 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 147/315 (46%), Gaps = 25/315 (7%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTP--E 79
           TG I  Y   G + +ARK+FDE   + +  + WNA++A Y +  +  +A +L E  P   
Sbjct: 155 TGLIQMYFSCGGLGDARKMFDEM--LVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWV 212

Query: 80  KNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNV----VSWTSMVRGYVQEGNVEEAERL 135
           +N VSW  ++SG+ K+G  +EA  VF  M + NV    V+  +++      G++E  ER+
Sbjct: 213 RNEVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERI 272

Query: 136 FWRMPEKNVVSWTVMLGGLL----KDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRL 191
              +  + +     +   ++    K   +  A  +F+ +  ++VV  T +I G    G  
Sbjct: 273 CSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHG 332

Query: 192 EEARALFDEMPKRNV----VTWTTMVSGYARNRRVDVARKLFEVMPER-----NEVSWTA 242
            EA A+F+ M K  V    VT+  ++S  +    VD+ ++LF  M  +     N   +  
Sbjct: 333 AEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGC 392

Query: 243 MLMGYTHSGRMREASEFFDAMPVKPVVAC-NEMIMGFGFDGDV---DRAKAVFEKMRERD 298
           M+     +G++REA E   +MP K   A    ++       D+   +RA +   K+   +
Sbjct: 393 MIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLAASNVHHDLELGERALSELIKLEPNN 452

Query: 299 DGTWSAMIKVYERKG 313
            G +  +  +Y   G
Sbjct: 453 SGNYMLLANLYSNLG 467



 Score = 96.3 bits (238), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 137/294 (46%), Gaps = 24/294 (8%)

Query: 33  QIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGF 92
           QI     VF     +H  T     ++  YF       A  +F+    K++  WN +++G+
Sbjct: 137 QIHGQVVVFGFDSSVHVVT----GLIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAGY 192

Query: 93  VKNGMVAEARRVFDAMP--VRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV----VS 146
            K G + EAR + + MP  VRN VSWT ++ GY + G   EA  +F RM  +NV    V+
Sbjct: 193 GKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVT 252

Query: 147 WTVMLGGLLKDSRVEDARKL---FDMMPVKDVVAVTN-MIGGYCEEGRLEEARALFDEMP 202
              +L        +E   ++    D   +   V++ N +I  Y + G + +A  +F+ + 
Sbjct: 253 LLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVN 312

Query: 203 KRNVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASE 258
           +RNVVTWTT+++G A +     A  +F  M +     N+V++ A+L   +H G +     
Sbjct: 313 ERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKR 372

Query: 259 FFDAMPVKPVVACNE-----MIMGFGFDGDVDRAKAVFEKMRERDDGT-WSAMI 306
            F++M  K  +  N      MI   G  G +  A  V + M  + +   W +++
Sbjct: 373 LFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGSLL 426



 Score = 90.9 bits (224), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 95/201 (47%), Gaps = 43/201 (21%)

Query: 353 GRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSM------ 406
           GRQ+H ++V   FD  ++V + LI MY  CG L  A+ +F+   +KDV +WN++      
Sbjct: 135 GRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGK 194

Query: 407 ---------------------------ITGYSQHGLGEEALNVFRDMCLSGVPPDDISFI 439
                                      I+GY++ G   EA+ VF+ M +  V PD+++ +
Sbjct: 195 VGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLL 254

Query: 440 GVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACM----VDLLGRAGQVNDAVEIVE 495
            VLSAC+  G ++ G  I     C Y    G+     +    +D+  ++G +  A+++ E
Sbjct: 255 AVLSACADLGSLELGERI-----CSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFE 309

Query: 496 KMPMEPDAIVWGSLLGACRTH 516
            +  E + + W +++    TH
Sbjct: 310 CVN-ERNVVTWTTIIAGLATH 329



 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 123/284 (43%), Gaps = 52/284 (18%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKN--- 81
           ++ Y ++G+++ AR + +  P   R   SW  +++ Y ++ +  +A+ +F+    +N   
Sbjct: 189 LAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRMLMENVEP 248

Query: 82  -----------------------IVSW-------------NGMVSGFVKNGMVAEARRVF 105
                                  I S+             N ++  + K+G + +A  VF
Sbjct: 249 DEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVF 308

Query: 106 DAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV----VSWTVMLGGLLKDSRVE 161
           + +  RNVV+WT+++ G    G+  EA  +F RM +  V    V++  +L        V+
Sbjct: 309 ECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVD 368

Query: 162 DARKLFDMMPVK-----DVVAVTNMIGGYCEEGRLEEARALFDEMP-KRNVVTWTTMVSG 215
             ++LF+ M  K     ++     MI      G+L EA  +   MP K N   W ++++ 
Sbjct: 369 LGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLAA 428

Query: 216 YARNRRVDVA-RKLFEVMPERNEVSWTAMLMG--YTHSGRMREA 256
              +  +++  R L E++      S   ML+   Y++ GR  E+
Sbjct: 429 SNVHHDLELGERALSELIKLEPNNSGNYMLLANLYSNLGRWDES 472



 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 85/172 (49%), Gaps = 11/172 (6%)

Query: 18  QCTSTGAISRYARIGQIENARKVFDETPH--IHRTTSSWNAMVAAYFQAHQPHQAVTLFE 75
           + T    +S  A +G +E   ++     H  ++R  S  NA++  Y ++    +A+ +FE
Sbjct: 250 EVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFE 309

Query: 76  TTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAM---PVR-NVVSWTSMVRGYVQEGNVEE 131
              E+N+V+W  +++G   +G  AEA  +F+ M    VR N V++ +++      G V+ 
Sbjct: 310 CVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDL 369

Query: 132 AERLFWRMPEK-----NVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAV 178
            +RLF  M  K     N+  +  M+  L +  ++ +A ++   MP K   A+
Sbjct: 370 GKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAI 421


>AT4G08210.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr4:5183813-5185873 REVERSE
           LENGTH=686
          Length = 686

 Score =  253 bits (647), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 178/655 (27%), Positives = 289/655 (44%), Gaps = 110/655 (16%)

Query: 21  STGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLF------ 74
           +   IS Y     + +A KVFDE     R   +W  MV+ Y    +P++A+ L+      
Sbjct: 43  ANNVISMYVDFRLLSDAHKVFDEMSE--RNIVTWTTMVSGYTSDGKPNKAIELYRRMLDS 100

Query: 75  ------------------------------ETTPEKN----IVSWNGMVSGFVKNGMVAE 100
                                         E   ++N    +V  N +V  +VKNG + E
Sbjct: 101 EEEAANEFMYSAVLKACGLVGDIQLGILVYERIGKENLRGDVVLMNSVVDMYVKNGRLIE 160

Query: 101 ARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRV 160
           A   F  +   +  SW +++ GY + G ++EA  LF RMP+ NVVSW  ++ G +     
Sbjct: 161 ANSSFKEILRPSSTSWNTLISGYCKAGLMDEAVTLFHRMPQPNVVSWNCLISGFVDKGSP 220

Query: 161 EDARKLFDM-----------MPV---------------------------KDVVAVTNMI 182
                L  M           +P                                A++ +I
Sbjct: 221 RALEFLVRMQREGLVLDGFALPCGLKACSFGGLLTMGKQLHCCVVKSGLESSPFAISALI 280

Query: 183 GGYCEEGRLEEARALFDE---MPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVS 239
             Y   G L  A  +F +       +V  W +M+SG+  N   + A  L  +   ++++ 
Sbjct: 281 DMYSNCGSLIYAADVFHQEKLAVNSSVAVWNSMLSGFLINEENEAALWLL-LQIYQSDLC 339

Query: 240 WTAMLMGYTHSGRMREASEFFD---AMPVKPVVACNEMIMGFGFD--------------G 282
           + +    YT SG ++    + +    + V  +V    ++ G+  D              G
Sbjct: 340 FDS----YTLSGALKICINYVNLRLGLQVHSLV----VVSGYELDYIVGSILVDLHANVG 391

Query: 283 DVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXX 342
           ++  A  +F ++  +D   +S +I+   + GF   A  LF  + + G   +         
Sbjct: 392 NIQDAHKLFHRLPNKDIIAFSGLIRGCVKSGFNSLAFYLFRELIKLGLDADQFIVSNILK 451

Query: 343 XXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVM 402
                     G+Q+H   ++  ++ +   A+AL+ MYVKCG++     +F+    +DVV 
Sbjct: 452 VCSSLASLGWGKQIHGLCIKKGYESEPVTATALVDMYVKCGEIDNGVVLFDGMLERDVVS 511

Query: 403 WNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMK 462
           W  +I G+ Q+G  EEA   F  M   G+ P+ ++F+G+LSAC +SG ++E R   E+MK
Sbjct: 512 WTGIIVGFGQNGRVEEAFRYFHKMINIGIEPNKVTFLGLLSACRHSGLLEEARSTLETMK 571

Query: 463 CKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLA 522
            +Y +EP +EHY C+VDLLG+AG   +A E++ KMP+EPD  +W SLL AC TH    L 
Sbjct: 572 SEYGLEPYLEHYYCVVDLLGQAGLFQEANELINKMPLEPDKTIWTSLLTACGTHKNAGLV 631

Query: 523 EVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWI 577
            V  EKL +  P +   Y  LS+ YA+ G W+ +  VRE  K     K  G SWI
Sbjct: 632 TVIAEKLLKGFPDDPSVYTSLSNAYATLGMWDQLSKVREAAKKLGA-KESGMSWI 685



 Score =  145 bits (365), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 126/509 (24%), Positives = 224/509 (44%), Gaps = 79/509 (15%)

Query: 62  FQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVR 121
            QAH   Q ++       +N+   N ++S +V   ++++A +VFD M  RN+V+WT+MV 
Sbjct: 27  IQAHVIKQGIS-------QNVFIANNVISMYVDFRLLSDAHKVFDEMSERNIVTWTTMVS 79

Query: 122 GYVQEGNVEEAERLFWRMPEK-----NVVSWTVMLG--GLLKDSRV----------EDAR 164
           GY  +G   +A  L+ RM +      N   ++ +L   GL+ D ++          E+ R
Sbjct: 80  GYTSDGKPNKAIELYRRMLDSEEEAANEFMYSAVLKACGLVGDIQLGILVYERIGKENLR 139

Query: 165 KLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDV 224
                    DVV + +++  Y + GRL EA + F E+ + +  +W T++SGY +   +D 
Sbjct: 140 G--------DVVLMNSVVDMYVKNGRLIEANSSFKEILRPSSTSWNTLISGYCKAGLMDE 191

Query: 225 ARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVV-----------ACN- 272
           A  LF  MP+ N VSW  ++ G+   G  R A EF   M  + +V           AC+ 
Sbjct: 192 AVTLFHRMPQPNVVSWNCLISGFVDKGSPR-ALEFLVRMQREGLVLDGFALPCGLKACSF 250

Query: 273 --EMIMG----------------FGFDGDVDR---------AKAVF--EKMRERDD-GTW 302
              + MG                F     +D          A  VF  EK+        W
Sbjct: 251 GGLLTMGKQLHCCVVKSGLESSPFAISALIDMYSNCGSLIYAADVFHQEKLAVNSSVAVW 310

Query: 303 SAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVR 362
           ++M+  +        AL L  ++ +     +                   G QVH+ +V 
Sbjct: 311 NSMLSGFLINEENEAALWLLLQIYQSDLCFDSYTLSGALKICINYVNLRLGLQVHSLVVV 370

Query: 363 SEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNV 422
           S ++ D  V S L+ ++   G++  A  +F+R P KD++ ++ +I G  + G    A  +
Sbjct: 371 SGYELDYIVGSILVDLHANVGNIQDAHKLFHRLPNKDIIAFSGLIRGCVKSGFNSLAFYL 430

Query: 423 FRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFE-SMKCKYQVEPGIEHYACMVDLL 481
           FR++   G+  D      +L  CS    +  G++I    +K  Y+ EP       +VD+ 
Sbjct: 431 FRELIKLGLDADQFIVSNILKVCSSLASLGWGKQIHGLCIKKGYESEPVTA--TALVDMY 488

Query: 482 GRAGQVNDAVEIVEKMPMEPDAIVWGSLL 510
            + G++++ V + + M +E D + W  ++
Sbjct: 489 VKCGEIDNGVVLFDGM-LERDVVSWTGII 516



 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 84/189 (44%), Gaps = 32/189 (16%)

Query: 353 GRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQ 412
           G  + A +++    Q++++A+ +I+MYV    L  A  +F+    +++V W +M++GY+ 
Sbjct: 24  GESIQAHVIKQGISQNVFIANNVISMYVDFRLLSDAHKVFDEMSERNIVTWTTMVSGYTS 83

Query: 413 HGLGEEALNVFRDMCLS-GVPPDDISFIGVLSACSYSGK--------------------- 450
            G   +A+ ++R M  S     ++  +  VL AC   G                      
Sbjct: 84  DGKPNKAIELYRRMLDSEEEAANEFMYSAVLKACGLVGDIQLGILVYERIGKENLRGDVV 143

Query: 451 ---------VKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEP 501
                    VK GR I  +   K  + P    +  ++    +AG +++AV +  +MP +P
Sbjct: 144 LMNSVVDMYVKNGRLIEANSSFKEILRPSSTSWNTLISGYCKAGLMDEAVTLFHRMP-QP 202

Query: 502 DAIVWGSLL 510
           + + W  L+
Sbjct: 203 NVVSWNCLI 211


>AT2G02750.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:771641-773482 REVERSE
           LENGTH=613
          Length = 613

 Score =  252 bits (643), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 169/546 (30%), Positives = 284/546 (52%), Gaps = 30/546 (5%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVR--- 111
            A+V+ Y +  Q   A+ + +  PE+ I S N  VSG ++NG   +A R+F    V    
Sbjct: 70  TALVSMYMKVKQVTDALKVLDEMPERGIASVNAAVSGLLENGFCRDAFRMFGDARVSGSG 129

Query: 112 -NVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKD--SRVED---ARK 165
            N V+  S++ G    G++E   +L   +  K+     V +G  L    SR  +   A +
Sbjct: 130 MNSVTVASVLGGC---GDIEGGMQLHC-LAMKSGFEMEVYVGTSLVSMYSRCGEWVLAAR 185

Query: 166 LFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPK-----RNVVTWTTMVSGYARNR 220
           +F+ +P K VV     I G  E G +    ++F+ M K      N VT+   ++  A   
Sbjct: 186 MFEKVPHKSVVTYNAFISGLMENGVMNLVPSVFNLMRKFSSEEPNDVTFVNAITACASLL 245

Query: 221 RVDVARKLFEVMPERN----EVSWTAMLMGYTHSGRMREASEFFDAMP-VKPVVACNEMI 275
            +   R+L  ++ ++      +  TA++  Y+     + A   F  +   + +++ N +I
Sbjct: 246 NLQYGRQLHGLVMKKEFQFETMVGTALIDMYSKCRCWKSAYIVFTELKDTRNLISWNSVI 305

Query: 276 MGFGFDGDVDRAKAVFEKMRER----DDGTWSAMIKVYERKGFELEALGLFARMQREGAA 331
            G   +G  + A  +FEK+       D  TW+++I  + + G  +EA   F RM      
Sbjct: 306 SGMMINGQHETAVELFEKLDSEGLKPDSATWNSLISGFSQLGKVIEAFKFFERMLSVVMV 365

Query: 332 LNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWI 391
            +                  +G+++H  ++++  ++D++V ++LI MY+KCG    A+ I
Sbjct: 366 PSLKCLTSLLSACSDIWTLKNGKEIHGHVIKAAAERDIFVLTSLIDMYMKCGLSSWARRI 425

Query: 392 FNRY--PLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSG 449
           F+R+    KD V WN MI+GY +HG  E A+ +F  +    V P   +F  VLSACS+ G
Sbjct: 426 FDRFEPKPKDPVFWNVMISGYGKHGECESAIEIFELLREEKVEPSLATFTAVLSACSHCG 485

Query: 450 KVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSL 509
            V++G +IF  M+ +Y  +P  EH  CM+DLLGR+G++ +A E++++M     ++   SL
Sbjct: 486 NVEKGSQIFRLMQEEYGYKPSTEHIGCMIDLLGRSGRLREAKEVIDQMSEPSSSVY-SSL 544

Query: 510 LGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVI 569
           LG+CR H+   L E A  KLA+LEP+N  P+V+LS +YA+  RWEDVE +R+ I  + ++
Sbjct: 545 LGSCRQHLDPVLGEEAAMKLAELEPENPAPFVILSSIYAALERWEDVESIRQVIDQKQLV 604

Query: 570 KLPGYS 575
           KLPG S
Sbjct: 605 KLPGLS 610



 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 79/148 (53%), Gaps = 6/148 (4%)

Query: 352 HGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYS 411
            GR +HA++V++ F  D++ A+AL++MY+K   +  A  + +  P + +   N+ ++G  
Sbjct: 49  QGRILHAQVVKTGFFVDVFTATALVSMYMKVKQVTDALKVLDEMPERGIASVNAAVSGLL 108

Query: 412 QHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIF-ESMKCKYQVEPG 470
           ++G   +A  +F D  +SG   + ++   VL  C   G ++ G ++   +MK  +++E  
Sbjct: 109 ENGFCRDAFRMFGDARVSGSGMNSVTVASVLGGC---GDIEGGMQLHCLAMKSGFEMEVY 165

Query: 471 IEHYACMVDLLGRAGQVNDAVEIVEKMP 498
           +     +V +  R G+   A  + EK+P
Sbjct: 166 VG--TSLVSMYSRCGEWVLAARMFEKVP 191


>AT3G13880.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:4572180-4574426 FORWARD
           LENGTH=748
          Length = 748

 Score =  251 bits (642), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 174/646 (26%), Positives = 286/646 (44%), Gaps = 66/646 (10%)

Query: 28  YARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNI----- 82
           Y +  ++  AR++FD  P   R   S+N++++ Y Q     QA+ LF    E N+     
Sbjct: 92  YCKCRELGFARQLFDRMPE--RNIISFNSLISGYTQMGFYEQAMELFLEAREANLKLDKF 149

Query: 83  ------------------------VSWNGM----------VSGFVKNGMVAEARRVFDAM 108
                                   V  NG+          +  + K G + +A  +FD  
Sbjct: 150 TYAGALGFCGERCDLDLGELLHGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRC 209

Query: 109 PVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFD 168
             R+ VSW S++ GYV+ G  EE   L  +M    +   T  LG +LK   +       +
Sbjct: 210 DERDQVSWNSLISGYVRVGAAEEPLNLLAKMHRDGLNLTTYALGSVLKACCINLNEGFIE 269

Query: 169 M-MPVK----------DVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYA 217
             M +           D+V  T ++  Y + G L+EA  LF  MP +NVVT+  M+SG+ 
Sbjct: 270 KGMAIHCYTAKLGMEFDIVVRTALLDMYAKNGSLKEAIKLFSLMPSKNVVTYNAMISGFL 329

Query: 218 RNRRV-----DVARKLFEVMPERN---EVSWTAMLMGYTHSGRMREASEFFDAMPVKPVV 269
           +   +       A KLF  M  R      S  ++++    + +  E      A+  K   
Sbjct: 330 QMDEITDEASSEAFKLFMDMQRRGLEPSPSTFSVVLKACSAAKTLEYGRQIHALICKNNF 389

Query: 270 ACNEMIMG-----FGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFAR 324
             +E I       +   G  +     F    ++D  +W++MI  + +      A  LF +
Sbjct: 390 QSDEFIGSALIELYALMGSTEDGMQCFASTSKQDIASWTSMIDCHVQNEQLESAFDLFRQ 449

Query: 325 MQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGD 384
           +                           G Q+    ++S  D    V ++ I+MY K G+
Sbjct: 450 LFSSHIRPEEYTVSLMMSACADFAALSSGEQIQGYAIKSGIDAFTSVKTSSISMYAKSGN 509

Query: 385 LVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSA 444
           +  A  +F      DV  +++MI+  +QHG   EALN+F  M   G+ P+  +F+GVL A
Sbjct: 510 MPLANQVFIEVQNPDVATYSAMISSLAQHGSANEALNIFESMKTHGIKPNQQAFLGVLIA 569

Query: 445 CSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAI 504
           C + G V +G + F+ MK  Y++ P  +H+ C+VDLLGR G+++DA  ++     +   +
Sbjct: 570 CCHGGLVTQGLKYFQCMKNDYRINPNEKHFTCLVDLLGRTGRLSDAENLILSSGFQDHPV 629

Query: 505 VWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIK 564
            W +LL +CR +    + +   E+L +LEP+ +G YVLL ++Y   G     E VRE ++
Sbjct: 630 TWRALLSSCRVYKDSVIGKRVAERLMELEPEASGSYVLLHNIYNDSGVNSSAEEVRELMR 689

Query: 565 TRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGL 610
            R V K P  SWI +  + H F   D + HP   +I  MLE +D +
Sbjct: 690 DRGVKKEPALSWIVIGNQTHSFAVADLS-HPSSQMIYTMLETMDNV 734



 Score = 70.1 bits (170), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 96/180 (53%), Gaps = 5/180 (2%)

Query: 353 GRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQ 412
           G+  H  +++S  +  LY+ + L+ MY KC +L  A+ +F+R P ++++ +NS+I+GY+Q
Sbjct: 66  GKLAHGHMIKSSLNPCLYLLNNLLNMYCKCRELGFARQLFDRMPERNIISFNSLISGYTQ 125

Query: 413 HGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIE 472
            G  E+A+ +F +   + +  D  ++ G L  C     +  G E+   +     +   + 
Sbjct: 126 MGFYEQAMELFLEAREANLKLDKFTYAGALGFCGERCDLDLG-ELLHGLVVVNGLSQQVF 184

Query: 473 HYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQL 532
               ++D+  + G+++ A+ + ++   E D + W SL+     ++++  AE  +  LA++
Sbjct: 185 LINVLIDMYSKCGKLDQAMSLFDRCD-ERDQVSWNSLISG---YVRVGAAEEPLNLLAKM 240


>AT4G18840.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr4:10338719-10340356 REVERSE
           LENGTH=545
          Length = 545

 Score =  249 bits (636), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 171/542 (31%), Positives = 261/542 (48%), Gaps = 52/542 (9%)

Query: 30  RIGQIENARK--VFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNG 87
           R+ Q EN +K  V   TP    + +     +    QAH       LF  T      S + 
Sbjct: 22  RLLQKENLKKMSVCSSTPVPILSFTERAKSLTEIQQAHAFMLKTGLFHDT-----FSASK 76

Query: 88  MVSGFVKN---GMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV 144
           +V+    N     V+ A  + + +   N  +  S++R Y      E A  +F  M     
Sbjct: 77  LVAFAATNPEPKTVSYAHSILNRIGSPNGFTHNSVIRAYANSSTPEVALTVFREM----- 131

Query: 145 VSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKR 204
                +LG +  D                    V      +C     EE R +     K 
Sbjct: 132 -----LLGPVFPDKY--------------SFTFVLKACAAFC---GFEEGRQIHGLFIKS 169

Query: 205 NVVT----WTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFF 260
            +VT      T+V+ Y R+   ++ARK+ + MP R+ VSW ++L  Y   G + EA   F
Sbjct: 170 GLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALF 229

Query: 261 DAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALG 320
           D M  + V + N MI G+   G V  AK VF+ M  RD  +W+AM+  Y   G   E L 
Sbjct: 230 DEMEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLE 289

Query: 321 LFARM------QREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASA 374
           +F +M      + +G  L                    G  VH  + +   + + ++A+A
Sbjct: 290 VFNKMLDDSTEKPDGFTL-----VSVLSACASLGSLSQGEWVHVYIDKHGIEIEGFLATA 344

Query: 375 LITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPD 434
           L+ MY KCG + +A  +F     +DV  WNS+I+  S HGLG++AL +F +M   G  P+
Sbjct: 345 LVDMYSKCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPN 404

Query: 435 DISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIV 494
            I+FIGVLSAC++ G + + R++FE M   Y+VEP IEHY CMVDLLGR G++ +A E+V
Sbjct: 405 GITFIGVLSACNHVGMLDQARKLFEMMSSVYRVEPTIEHYGCMVDLLGRMGKIEEAEELV 464

Query: 495 EKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWE 554
            ++P +  +I+  SLLGAC+   +L+ AE    +L +L  +++  Y  +S++YAS GRWE
Sbjct: 465 NEIPADEASILLESLLGACKRFGQLEQAERIANRLLELNLRDSSGYAQMSNLYASDGRWE 524

Query: 555 DV 556
            V
Sbjct: 525 KV 526



 Score =  119 bits (297), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/265 (30%), Positives = 134/265 (50%), Gaps = 25/265 (9%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVS 84
           ++ Y R G  E ARKV D  P   R   SWN++++AY +     +A  LF+   E+N+ S
Sbjct: 182 VNVYGRSGYFEIARKVLDRMPV--RDAVSWNSLLSAYLEKGLVDEARALFDEMEERNVES 239

Query: 85  WNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEK-- 142
           WN M+SG+   G+V EA+ VFD+MPVR+VVSW +MV  Y   G   E   +F +M +   
Sbjct: 240 WNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDDST 299

Query: 143 ---------NVVSWTVMLGGLLKDSRVEDARKLFDMMPVK-DVVAVTNMIGGYCEEGRLE 192
                    +V+S    LG L   S+ E      D   ++ +    T ++  Y + G+++
Sbjct: 300 EKPDGFTLVSVLSACASLGSL---SQGEWVHVYIDKHGIEIEGFLATALVDMYSKCGKID 356

Query: 193 EARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMP----ERNEVSWTAMLMGYT 248
           +A  +F    KR+V TW +++S  + +     A ++F  M     + N +++  +L    
Sbjct: 357 KALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSACN 416

Query: 249 HSGRMREASEFFDAMP----VKPVV 269
           H G + +A + F+ M     V+P +
Sbjct: 417 HVGMLDQARKLFEMMSSVYRVEPTI 441



 Score = 83.6 bits (205), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 126/269 (46%), Gaps = 24/269 (8%)

Query: 354 RQVHARLVRSEFDQDLYVASALITMYVKCGD---LVRAKWIFNRYPLKDVVMWNSMITGY 410
           +Q HA ++++    D + AS L+       +   +  A  I NR    +    NS+I  Y
Sbjct: 56  QQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGFTHNSVIRAY 115

Query: 411 SQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPG 470
           +     E AL VFR+M L  V PD  SF  VL AC+     +EGR+I   +  K  +   
Sbjct: 116 ANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQI-HGLFIKSGLVTD 174

Query: 471 IEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLA 530
           +     +V++ GR+G    A +++++MP+  DA+ W SLL A   +++  L + A     
Sbjct: 175 VFVENTLVNVYGRSGYFEIARKVLDRMPVR-DAVSWNSLLSA---YLEKGLVDEARALFD 230

Query: 531 QLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGD 590
           ++E +N   +  +   YA+ G  ++ + V + +  R V+     SW      A+  VG  
Sbjct: 231 EMEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVV-----SW-NAMVTAYAHVG-- 282

Query: 591 NNCHPEQPIIMKMLERLDGLLRDAGYSPD 619
             C+ E      +LE  + +L D+   PD
Sbjct: 283 --CYNE------VLEVFNKMLDDSTEKPD 303


>AT1G03540.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:883782-885611 FORWARD
           LENGTH=609
          Length = 609

 Score =  246 bits (629), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 168/586 (28%), Positives = 289/586 (49%), Gaps = 33/586 (5%)

Query: 20  TSTGAISRYARIGQIENARKVFDET--------PHIHRTTSSWNAMVAAYFQAHQPHQAV 71
           T    I    ++GQ+  A ++ + T        P ++ +       V ++    Q H  V
Sbjct: 28  TKQSRILELCKLGQLTEAIRILNSTHSSEIPATPKLYASLLQTCNKVFSFIHGIQFHAHV 87

Query: 72  TLFETTPEKNIVSWNGMVSGFVKNG-MVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVE 130
                  ++N+   N ++S + K G  + E RRVFD   V++ +SWTSM+ GYV      
Sbjct: 88  VKSGLETDRNV--GNSLLSLYFKLGPGMRETRRVFDGRFVKDAISWTSMMSGYVTGKEHV 145

Query: 131 EAERLFWRMPEKNVVSWTVMLGGLLKD-SRVEDAR--KLFDMMPVKDVVAVTNMIGG--- 184
           +A  +F  M    + +    L   +K  S + + R  + F  + +       + I     
Sbjct: 146 KALEVFVEMVSFGLDANEFTLSSAVKACSELGEVRLGRCFHGVVITHGFEWNHFISSTLA 205

Query: 185 --YCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEV---- 238
             Y       +AR +FDEMP+ +V+ WT ++S +++N   + A  LF  M     +    
Sbjct: 206 YLYGVNREPVDARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDG 265

Query: 239 -SWTAMLMGYTHSGRMREASEFFDAMPVK----PVVACNEMIMGFGFDGDVDRAKAVFEK 293
            ++  +L    +  R+++  E    +        VV  + ++  +G  G V  A+ VF  
Sbjct: 266 STFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKCGSVREARQVFNG 325

Query: 294 MRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHG 353
           M +++  +WSA++  Y + G   +A+ +F  M+ +    +                   G
Sbjct: 326 MSKKNSVSWSALLGGYCQNGEHEKAIEIFREMEEK----DLYCFGTVLKACAGLAAVRLG 381

Query: 354 RQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQH 413
           +++H + VR     ++ V SALI +Y K G +  A  ++++  +++++ WN+M++  +Q+
Sbjct: 382 KEIHGQYVRRGCFGNVIVESALIDLYGKSGCIDSASRVYSKMSIRNMITWNAMLSALAQN 441

Query: 414 GLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEH 473
           G GEEA++ F DM   G+ PD ISFI +L+AC ++G V EGR  F  M   Y ++PG EH
Sbjct: 442 GRGEEAVSFFNDMVKKGIKPDYISFIAILTACGHTGMVDEGRNYFVLMAKSYGIKPGTEH 501

Query: 474 YACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLD-LAEVAVEKLAQL 532
           Y+CM+DLLGRAG   +A  ++E+     DA +WG LLG C  +     +AE   +++ +L
Sbjct: 502 YSCMIDLLGRAGLFEEAENLLERAECRNDASLWGVLLGPCAANADASRVAERIAKRMMEL 561

Query: 533 EPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIE 578
           EPK    YVLLS+MY + GR  D   +R+ +  R V K  G SWI+
Sbjct: 562 EPKYHMSYVLLSNMYKAIGRHGDALNIRKLMVRRGVAKTVGQSWID 607


>AT3G05240.1 | Symbols: MEF19 | mitochondrial editing factor  19 |
           chr3:1493684-1495381 REVERSE LENGTH=565
          Length = 565

 Score =  246 bits (628), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 154/507 (30%), Positives = 254/507 (50%), Gaps = 25/507 (4%)

Query: 98  VAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM------PEKNVVSWTVML 151
           ++ AR VF+++   +V  W SM+RGY    N ++A   +  M      P+     + +  
Sbjct: 57  LSYARSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKA 116

Query: 152 GGLLKDSRVEDARKLFDMMPVKDV--VAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTW 209
              L+D +       F +    +V     T ++  Y   G +     +F+++P+ NVV W
Sbjct: 117 CSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAW 176

Query: 210 TTMVSGYARNRRVDVARKLFEVMPERN-EVSWTAMLMGYTHSGRMREASE------FFDA 262
            +++SG+  N R   A + F  M     + + T M+      GR ++         F   
Sbjct: 177 GSLISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQG 236

Query: 263 MPVKP---------VVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKG 313
           +   P         V+    +I  +   GD+  A+ +F+ M ER   +W+++I  Y + G
Sbjct: 237 LGFDPYFQSKVGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNG 296

Query: 314 FELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVAS 373
              EAL +F  M   G A +                   G+ +HA + ++ F +D  +  
Sbjct: 297 DAEEALCMFLDMLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVC 356

Query: 374 ALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSG-VP 432
           AL+ MY K GD   AK  F     KD + W  +I G + HG G EAL++F+ M   G   
Sbjct: 357 ALVNMYAKTGDAESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNAT 416

Query: 433 PDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVE 492
           PD I+++GVL ACS+ G V+EG+  F  M+  + +EP +EHY CMVD+L RAG+  +A  
Sbjct: 417 PDGITYLGVLYACSHIGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAER 476

Query: 493 IVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGR 552
           +V+ MP++P+  +WG+LL  C  H  L+L +     +A+ E   +G YVLLS++YA  GR
Sbjct: 477 LVKTMPVKPNVNIWGALLNGCDIHENLELTDRIRSMVAEPEELGSGIYVLLSNIYAKAGR 536

Query: 553 WEDVEVVREKIKTRSVIKLPGYSWIEV 579
           W DV+++RE +K++ V K+ G+S +E 
Sbjct: 537 WADVKLIRESMKSKRVDKVLGHSSVET 563



 Score = 91.7 bits (226), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 98/203 (48%), Gaps = 13/203 (6%)

Query: 74  FETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAE 133
           F++    N++    ++  + K G +  AR +FD MP R +VSW S++ GY Q G+ EEA 
Sbjct: 243 FQSKVGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEAL 302

Query: 134 RLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMP--------VKDVVAVTNMIGGY 185
            +F  M +  +    V    +++ S ++   +L   +         VKD   V  ++  Y
Sbjct: 303 CMFLDMLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMY 362

Query: 186 CEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNE-----VSW 240
            + G  E A+  F+++ K++ + WT ++ G A +   + A  +F+ M E+       +++
Sbjct: 363 AKTGDAESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGITY 422

Query: 241 TAMLMGYTHSGRMREASEFFDAM 263
             +L   +H G + E   +F  M
Sbjct: 423 LGVLYACSHIGLVEEGQRYFAEM 445



 Score = 90.9 bits (224), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 84/368 (22%), Positives = 149/368 (40%), Gaps = 77/368 (20%)

Query: 33  QIENARKVFD--ETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKN--------- 81
            +  AR VF+  + P ++     WN+M+  Y  +  P +A+  ++    K          
Sbjct: 56  NLSYARSVFESIDCPSVY----IWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFP 111

Query: 82  --IVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM 139
             + + +G+    ++ G       V     V   VS T ++  Y+  G V    R+F  +
Sbjct: 112 YVLKACSGLRD--IQFGSCVHGFVVKTGFEVNMYVS-TCLLHMYMCCGEVNYGLRVFEDI 168

Query: 140 PEKNVVSWTVMLGGLLKDSRVEDARKLFDMMP--------------------VKDVVA-- 177
           P+ NVV+W  ++ G + ++R  DA + F  M                      KD+V   
Sbjct: 169 PQWNVVAWGSLISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGK 228

Query: 178 -------------------------VTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTM 212
                                     T++I  Y + G L  AR LFD MP+R +V+W ++
Sbjct: 229 WFHGFLQGLGFDPYFQSKVGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSI 288

Query: 213 VSGYARNRRVDVARKLF------EVMPERN---EVSWTAMLMGYTHSGRMREASEFFDAM 263
           ++GY++N   + A  +F       + P++     V   +M+ G +  G+   A       
Sbjct: 289 ITGYSQNGDAEEALCMFLDMLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGF 348

Query: 264 PVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFA 323
                + C  ++  +   GD + AK  FE + ++D   W+ +I      G   EAL +F 
Sbjct: 349 VKDAAIVC-ALVNMYAKTGDAESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQ 407

Query: 324 RMQREGAA 331
           RMQ +G A
Sbjct: 408 RMQEKGNA 415



 Score = 76.3 bits (186), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 108/245 (44%), Gaps = 21/245 (8%)

Query: 21  STGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEK 80
           +T  I  YA+ G +  AR +FD  P   RT  SWN+++  Y Q     +A+ +F    + 
Sbjct: 254 ATSLIDMYAKCGDLRTARYLFDGMP--ERTLVSWNSIITGYSQNGDAEEALCMFLDMLDL 311

Query: 81  NIVSWNGMVSGFVKNGMVAEARRVFDAMP--------VRNVVSWTSMVRGYVQEGNVEEA 132
            I          ++  M+    ++  ++         V++     ++V  Y + G+ E A
Sbjct: 312 GIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKTGDAESA 371

Query: 133 ERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVK-----DVVAVTNMIGGYCE 187
           ++ F  + +K+ ++WTV++ GL       +A  +F  M  K     D +    ++     
Sbjct: 372 KKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGITYLGVLYACSH 431

Query: 188 EGRLEEARALFDEMP-----KRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVS-WT 241
            G +EE +  F EM      +  V  +  MV   +R  R + A +L + MP +  V+ W 
Sbjct: 432 IGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVKPNVNIWG 491

Query: 242 AMLMG 246
           A+L G
Sbjct: 492 ALLNG 496



 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 127/285 (44%), Gaps = 30/285 (10%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVF----DAMPV 110
            +++  Y +      A  LF+  PE+ +VSWN +++G+ +NG   EA  +F    D    
Sbjct: 255 TSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGIA 314

Query: 111 RNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLL----KDSRVEDARKL 166
            + V++ S++R  + +G  +  + +   + +   V    ++  L+    K    E A+K 
Sbjct: 315 PDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKTGDAESAKKA 374

Query: 167 FDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKR-----NVVTWTTMVSGYARNRR 221
           F+ +  KD +A T +I G    G   EA ++F  M ++     + +T+  ++   +    
Sbjct: 375 FEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGITYLGVLYACSHIGL 434

Query: 222 VDVARKLFEVMPERNEVSWT-----AMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIM 276
           V+  ++ F  M + + +  T      M+   + +GR  EA      MPVKP    N  I 
Sbjct: 435 VEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVKP----NVNIW 490

Query: 277 GFGFDG-DV-------DRAKAVFEKMRERDDGTWSAMIKVYERKG 313
           G   +G D+       DR +++  +  E   G +  +  +Y + G
Sbjct: 491 GALLNGCDIHENLELTDRIRSMVAEPEELGSGIYVLLSNIYAKAG 535



 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 5/162 (3%)

Query: 354 RQVHARLVRSEFDQDLYVASALITMYVKCG---DLVRAKWIFNRYPLKDVVMWNSMITGY 410
            Q+H  +++S   +++   S LI     C    +L  A+ +F       V +WNSMI GY
Sbjct: 23  NQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDCPSVYIWNSMIRGY 82

Query: 411 SQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPG 470
           S     ++AL  +++M   G  PD  +F  VL ACS    ++ G  +      K   E  
Sbjct: 83  SNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCV-HGFVVKTGFEVN 141

Query: 471 IEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGA 512
           +    C++ +    G+VN  + + E +P + + + WGSL+  
Sbjct: 142 MYVSTCLLHMYMCCGEVNYGLRVFEDIP-QWNVVAWGSLISG 182


>AT2G42920.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr2:17858705-17860384 FORWARD
           LENGTH=559
          Length = 559

 Score =  246 bits (628), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 165/520 (31%), Positives = 267/520 (51%), Gaps = 21/520 (4%)

Query: 107 AMPVRNVVSWTSMVRGY-VQEGNVEEAERLFWRMPEKNVVSWTVMLGGLL-----KDSRV 160
           AMP    +S  + +R    Q   + E +++   + +  ++S TV    +L       S +
Sbjct: 15  AMPSSGSLSGNTYLRLIDTQCSTMRELKQIHASLIKTGLISDTVTASRVLAFCCASPSDM 74

Query: 161 EDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEM--------PKRNVVTWTTM 212
             A  +F  +  K+      +I G+      E A ++F +M        P+R  +T+ ++
Sbjct: 75  NYAYLVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQR--LTYPSV 132

Query: 213 VSGYARNRRVDVARKLFEVMP----ERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPV 268
              Y R  +    R+L  ++     E +      ML  Y   G + EA   F  M    V
Sbjct: 133 FKAYGRLGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDV 192

Query: 269 VACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQRE 328
           VA N MIMGF   G +D+A+ +F++M +R+  +W++MI  + R G   +AL +F  MQ +
Sbjct: 193 VAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEK 252

Query: 329 GAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRA 388
               +                 + GR +H  +VR+ F+ +  V +ALI MY KCG +   
Sbjct: 253 DVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEG 312

Query: 389 KWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYS 448
             +F   P K +  WNSMI G + +G  E A+++F ++  SG+ PD +SFIGVL+AC++S
Sbjct: 313 LNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHS 372

Query: 449 GKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGS 508
           G+V    E F  MK KY +EP I+HY  MV++LG AG + +A  +++ MP+E D ++W S
Sbjct: 373 GEVHRADEFFRLMKEKYMIEPSIKHYTLMVNVLGGAGLLEEAEALIKNMPVEEDTVIWSS 432

Query: 509 LLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSV 568
           LL ACR    +++A+ A + L +L+P     YVLLS+ YAS G +E+    R  +K R +
Sbjct: 433 LLSACRKIGNVEMAKRAAKCLKKLDPDETCGYVLLSNAYASYGLFEEAVEQRLLMKERQM 492

Query: 569 IKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLD 608
            K  G S IEV+ + H F+      HP+   I  +L+ L+
Sbjct: 493 EKEVGCSSIEVDFEVHEFISCGGT-HPKSAEIYSLLDILN 531



 Score =  120 bits (302), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 146/310 (47%), Gaps = 28/310 (9%)

Query: 28  YARIGQIENARKVFDETPHIHRTTSSW--NAMVAAYFQAHQPHQAVTLFETTPEKNIVSW 85
           Y R+GQ  + R++            S+  N M+  Y       +A  +F      ++V+W
Sbjct: 136 YGRLGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAW 195

Query: 86  NGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVV 145
           N M+ GF K G++ +A+ +FD MP RN VSW SM+ G+V+ G  ++A  +F  M EK+V 
Sbjct: 196 NSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVK 255

Query: 146 SWTVMLGGLLKDSRVEDA------------RKLFDMMPVKDVVAVTNMIGGYCEEGRLEE 193
                +  LL       A            R  F++    + + VT +I  YC+ G +EE
Sbjct: 256 PDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFEL----NSIVVTALIDMYCKCGCIEE 311

Query: 194 ARALFDEMPKRNVVTWTTMVSGYARN----RRVDVARKLFEVMPERNEVSWTAMLMGYTH 249
              +F+  PK+ +  W +M+ G A N    R +D+  +L     E + VS+  +L    H
Sbjct: 312 GLNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAH 371

Query: 250 SGRMREASEFFDAMPVKPVVACN-----EMIMGFGFDGDVDRAKAVFEKMR-ERDDGTWS 303
           SG +  A EFF  M  K ++  +      M+   G  G ++ A+A+ + M  E D   WS
Sbjct: 372 SGEVHRADEFFRLMKEKYMIEPSIKHYTLMVNVLGGAGLLEEAEALIKNMPVEEDTVIWS 431

Query: 304 AMIKVYERKG 313
           +++    + G
Sbjct: 432 SLLSACRKIG 441



 Score = 94.4 bits (233), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 103/454 (22%), Positives = 192/454 (42%), Gaps = 50/454 (11%)

Query: 21  STGAISRYARIGQIENARKVFDETPHIHRT-------TSSWNAMVAAYFQAHQP---HQA 70
           S+G++S    +  I+       E   IH +       + +  A     F    P   + A
Sbjct: 18  SSGSLSGNTYLRLIDTQCSTMRELKQIHASLIKTGLISDTVTASRVLAFCCASPSDMNYA 77

Query: 71  VTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAM--------PVRNVVSWTSMVRG 122
             +F     KN   WN ++ GF ++     A  +F  M        P R  +++ S+ + 
Sbjct: 78  YLVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQR--LTYPSVFKA 135

Query: 123 YVQEGNVEEAERLFWRMP----EKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAV 178
           Y + G   +  +L   +     E +      ML   +    + +A ++F  M   DVVA 
Sbjct: 136 YGRLGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAW 195

Query: 179 TNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPER--- 235
            +MI G+ + G +++A+ LFDEMP+RN V+W +M+SG+ RN R   A  +F  M E+   
Sbjct: 196 NSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVK 255

Query: 236 -NEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFD-----GDVDRAKA 289
            +  +  ++L    + G   E   +     V+     N +++    D     G ++    
Sbjct: 256 PDGFTMVSLLNACAYLGA-SEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLN 314

Query: 290 VFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXX 349
           VFE   ++    W++MI      GFE  A+ LF+ ++R G   +                
Sbjct: 315 VFECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPD------SVSFIGVLTA 368

Query: 350 XDHGRQVHA-----RLVRSEF--DQDLYVASALITMYVKCGDLVRAKWIFNRYPL-KDVV 401
             H  +VH      RL++ ++  +  +   + ++ +    G L  A+ +    P+ +D V
Sbjct: 369 CAHSGEVHRADEFFRLMKEKYMIEPSIKHYTLMVNVLGGAGLLEEAEALIKNMPVEEDTV 428

Query: 402 MWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDD 435
           +W+S+++   + G  E A    +  CL  + PD+
Sbjct: 429 IWSSLLSACRKIGNVEMAKRAAK--CLKKLDPDE 460


>AT2G40720.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:16987269-16989851 FORWARD
           LENGTH=860
          Length = 860

 Score =  246 bits (627), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 165/547 (30%), Positives = 270/547 (49%), Gaps = 25/547 (4%)

Query: 88  MVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEK----- 142
           ++S + K GMV EA  VF  +  + +  W +MV  Y +      A  LF  M +K     
Sbjct: 313 LLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQKSVLPD 372

Query: 143 -----NVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAV-TNMIGGYCEEGRLEEARA 196
                NV+S   +LG  L +       +LF   P++    + + ++  Y + G   +A  
Sbjct: 373 SFTLSNVISCCSVLG--LYNYGKSVHAELFKR-PIQSTSTIESALLTLYSKCGCDPDAYL 429

Query: 197 LFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSW--TAMLMGYTHSGRMR 254
           +F  M ++++V W +++SG  +N +   A K+F  M + ++     + ++   T++    
Sbjct: 430 VFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACAGL 489

Query: 255 EASEF--------FDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMI 306
           EA  F             V  V   + +I  +   G  + A  VF  M   +   W++MI
Sbjct: 490 EALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSMSTENMVAWNSMI 549

Query: 307 KVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFD 366
             Y R      ++ LF  M  +G   +                   G+ +H   +R    
Sbjct: 550 SCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLRLGIP 609

Query: 367 QDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDM 426
            D ++ +ALI MYVKCG    A+ IF +   K ++ WN MI GY  HG    AL++F +M
Sbjct: 610 SDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIYGYGSHGDCITALSLFDEM 669

Query: 427 CLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQ 486
             +G  PDD++F+ ++SAC++SG V+EG+ IFE MK  Y +EP +EHYA MVDLLGRAG 
Sbjct: 670 KKAGESPDDVTFLSLISACNHSGFVEEGKNIFEFMKQDYGIEPNMEHYANMVDLLGRAGL 729

Query: 487 VNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHM 546
           + +A   ++ MP+E D+ +W  LL A RTH  ++L  ++ EKL ++EP+    YV L ++
Sbjct: 730 LEEAYSFIKAMPIEADSSIWLCLLSASRTHHNVELGILSAEKLLRMEPERGSTYVQLINL 789

Query: 547 YASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLER 606
           Y   G   +   +   +K + + K PG SWIEV  + ++F  G ++  P +  I  +L R
Sbjct: 790 YMEAGLKNEAAKLLGLMKEKGLHKQPGCSWIEVSDRTNVFFSGGSS-SPMKAEIFNVLNR 848

Query: 607 LDGLLRD 613
           L   + D
Sbjct: 849 LKSNMVD 855



 Score =  121 bits (303), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 130/577 (22%), Positives = 232/577 (40%), Gaps = 87/577 (15%)

Query: 21  STGAISRYARIGQIENARKVFD-----ETPHIHRTTSSWNAMVAAYFQAHQPHQAV---- 71
           +T  ++ Y + G ++ A +VFD     ++    R  + WN+M+  YF+  +  + V    
Sbjct: 98  ATSLVNMYVKCGFLDYAVQVFDGWSQSQSGVSARDVTVWNSMIDGYFKFRRFKEGVGCFR 157

Query: 72  --TLFETTPEKNIVSW-----------------------------------NGMVSGFVK 94
              +F   P+   +S                                      ++  + K
Sbjct: 158 RMLVFGVRPDAFSLSIVVSVMCKEGNFRREEGKQIHGFMLRNSLDTDSFLKTALIDMYFK 217

Query: 95  NGMVAEARRVFDAMPVR-NVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV----VSWTV 149
            G+  +A RVF  +  + NVV W  M+ G+   G  E +  L+      +V     S+T 
Sbjct: 218 FGLSIDAWRVFVEIEDKSNVVLWNVMIVGFGGSGICESSLDLYMLAKNNSVKLVSTSFTG 277

Query: 150 MLGGLLKDSRVEDARKL----FDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRN 205
            LG   +       R++      M    D    T+++  Y + G + EA  +F  +  + 
Sbjct: 278 ALGACSQSENSGFGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKR 337

Query: 206 VVTWTTMVSGYARNRRVDVARKLFEVMPER----------NEVSWTAMLMGYTHSGRMRE 255
           +  W  MV+ YA N     A  LF  M ++          N +S  ++L  Y + G+   
Sbjct: 338 LEIWNAMVAAYAENDYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNY-GKSVH 396

Query: 256 ASEFFDAMPVKPVVACNEMIMGF----GFDGDVDRAKAVFEKMRERDDGTWSAMIKVYER 311
           A  F    P++        ++      G D D   A  VF+ M E+D   W ++I    +
Sbjct: 397 AELF--KRPIQSTSTIESALLTLYSKCGCDPD---AYLVFKSMEEKDMVAWGSLISGLCK 451

Query: 312 KGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXD---HGRQVHARLVRSEFDQD 368
            G   EAL +F  M+ +  +L  P               +    G QVH  ++++    +
Sbjct: 452 NGKFKEALKVFGDMKDDDDSLK-PDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLN 510

Query: 369 LYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCL 428
           ++V S+LI +Y KCG    A  +F     +++V WNSMI+ YS++ L E ++++F  M  
Sbjct: 511 VFVGSSLIDLYSKCGLPEMALKVFTSMSTENMVAWNSMISCYSRNNLPELSIDLFNLMLS 570

Query: 429 SGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVN 488
            G+ PD +S   VL A S +  + +G+ +      +  +         ++D+  + G   
Sbjct: 571 QGIFPDSVSITSVLVAISSTASLLKGKSL-HGYTLRLGIPSDTHLKNALIDMYVKCGFSK 629

Query: 489 DAVEIVEKMPMEPDAIVWGSLL------GACRTHMKL 519
            A  I +KM      I W  ++      G C T + L
Sbjct: 630 YAENIFKKMQ-HKSLITWNLMIYGYGSHGDCITALSL 665



 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 114/470 (24%), Positives = 207/470 (44%), Gaps = 37/470 (7%)

Query: 88  MVSGFVKNGMVAEARRVFDA-------MPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM- 139
           +V+ +VK G +  A +VFD        +  R+V  W SM+ GY +    +E    F RM 
Sbjct: 101 LVNMYVKCGFLDYAVQVFDGWSQSQSGVSARDVTVWNSMIDGYFKFRRFKEGVGCFRRML 160

Query: 140 ---PEKNVVSWTVMLGGLLKDS--RVEDARKLFDMMPVK----DVVAVTNMIGGYCEEGR 190
                 +  S ++++  + K+   R E+ +++   M       D    T +I  Y + G 
Sbjct: 161 VFGVRPDAFSLSIVVSVMCKEGNFRREEGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGL 220

Query: 191 LEEARALFDEM-PKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEV-----SWTAML 244
             +A  +F E+  K NVV W  M+ G+  +   + +  L+ ++ + N V     S+T  L
Sbjct: 221 SIDAWRVFVEIEDKSNVVLWNVMIVGFGGSGICESSLDLY-MLAKNNSVKLVSTSFTGAL 279

Query: 245 MGYTHS-----GRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDD 299
              + S     GR          +   P V C  ++  +   G V  A+ VF  + ++  
Sbjct: 280 GACSQSENSGFGRQIHCDVVKMGLHNDPYV-CTSLLSMYSKCGMVGEAETVFSCVVDKRL 338

Query: 300 GTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHAR 359
             W+AM+  Y    +   AL LF  M+++    +                 ++G+ VHA 
Sbjct: 339 EIWNAMVAAYAENDYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAE 398

Query: 360 LVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEA 419
           L +        + SAL+T+Y KCG    A  +F     KD+V W S+I+G  ++G  +EA
Sbjct: 399 LFKRPIQSTSTIESALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEA 458

Query: 420 LNVFRDMC--LSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACM 477
           L VF DM      + PD      V +AC+    ++ G ++  SM  K  +   +   + +
Sbjct: 459 LKVFGDMKDDDDSLKPDSDIMTSVTNACAGLEALRFGLQVHGSM-IKTGLVLNVFVGSSL 517

Query: 478 VDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVE 527
           +DL  + G    A+++   M  E + + W S++     + + +L E++++
Sbjct: 518 IDLYSKCGLPEMALKVFTSMSTE-NMVAWNSMISC---YSRNNLPELSID 563



 Score =  107 bits (266), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 155/362 (42%), Gaps = 23/362 (6%)

Query: 174 DVVAVTNMIGGYCEEGRLEEARALFDE-------MPKRNVVTWTTMVSGYARNRR----V 222
           D    T+++  Y + G L+ A  +FD        +  R+V  W +M+ GY + RR    V
Sbjct: 94  DPFIATSLVNMYVKCGFLDYAVQVFDGWSQSQSGVSARDVTVWNSMIDGYFKFRRFKEGV 153

Query: 223 DVARKL--FEVMPERNEVSWTAMLMGYTHSGRMREASEFF-----DAMPVKPVVACNEMI 275
              R++  F V P+   +S    +M    + R  E  +       +++     +    + 
Sbjct: 154 GCFRRMLVFGVRPDAFSLSIVVSVMCKEGNFRREEGKQIHGFMLRNSLDTDSFLKTALID 213

Query: 276 MGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFP 335
           M F F   +D  +   E   + +   W+ MI  +   G    +L L+   +     L   
Sbjct: 214 MYFKFGLSIDAWRVFVEIEDKSNVVLWNVMIVGFGGSGICESSLDLYMLAKNNSVKLVST 273

Query: 336 XXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRY 395
                            GRQ+H  +V+     D YV ++L++MY KCG +  A+ +F+  
Sbjct: 274 SFTGALGACSQSENSGFGRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCV 333

Query: 396 PLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGR 455
             K + +WN+M+  Y+++  G  AL++F  M    V PD  +   V+S CS  G    G+
Sbjct: 334 VDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGK 393

Query: 456 EIF-ESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLL-GAC 513
            +  E  K   Q    IE  + ++ L  + G   DA  + + M  E D + WGSL+ G C
Sbjct: 394 SVHAELFKRPIQSTSTIE--SALLTLYSKCGCDPDAYLVFKSME-EKDMVAWGSLISGLC 450

Query: 514 RT 515
           + 
Sbjct: 451 KN 452



 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 105/233 (45%), Gaps = 23/233 (9%)

Query: 306 IKVYERKGFELEALGLFARMQREG----AALNFPXXXXXXXXXXXXXXXDHGRQVHARLV 361
           I+   +KG  L+AL L+++         +   FP                +G+ +H  +V
Sbjct: 31  IRALIQKGEYLQALHLYSKHDGSSPFWTSVFTFPSLLKACSALTNL---SYGKTIHGSVV 87

Query: 362 RSEFDQDLYVASALITMYVKCGDLVRAKWIFNRY-------PLKDVVMWNSMITGYSQHG 414
              +  D ++A++L+ MYVKCG L  A  +F+ +         +DV +WNSMI GY +  
Sbjct: 88  VLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWSQSQSGVSARDVTVWNSMIDGYFKFR 147

Query: 415 LGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVK--EGREIFESMKCKYQVEPGIE 472
             +E +  FR M + GV PD  S   V+S     G  +  EG++I   M  +  ++    
Sbjct: 148 RFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMCKEGNFRREEGKQIHGFM-LRNSLDTDSF 206

Query: 473 HYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLL------GACRTHMKL 519
               ++D+  + G   DA  +  ++  + + ++W  ++      G C + + L
Sbjct: 207 LKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMIVGFGGSGICESSLDL 259



 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 127/311 (40%), Gaps = 30/311 (9%)

Query: 25  ISRYARIGQIENARKVFDE--------TPHIHRTTSSWNAMVA--AYFQAHQPHQAVTLF 74
           IS   + G+ + A KVF +         P     TS  NA     A     Q H   ++ 
Sbjct: 446 ISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACAGLEALRFGLQVHG--SMI 503

Query: 75  ETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAER 134
           +T    N+   + ++  + K G+   A +VF +M   N+V+W SM+  Y +    E +  
Sbjct: 504 KTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSMSTENMVAWNSMISCYSRNNLPELSID 563

Query: 135 LFWRMPEKNV----VSWTVMLGGLLKDSRVEDARKL----FDMMPVKDVVAVTNMIGGYC 186
           LF  M  + +    VS T +L  +   + +   + L      +    D      +I  Y 
Sbjct: 564 LFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLRLGIPSDTHLKNALIDMYV 623

Query: 187 EEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNE----VSWTA 242
           + G  + A  +F +M  ++++TW  M+ GY  +     A  LF+ M +  E    V++ +
Sbjct: 624 KCGFSKYAENIFKKMQHKSLITWNLMIYGYGSHGDCITALSLFDEMKKAGESPDDVTFLS 683

Query: 243 MLMGYTHSGRMREASEFFDAMPVKPVVACN-----EMIMGFGFDGDVDRAKAVFEKMR-E 296
           ++    HSG + E    F+ M     +  N      M+   G  G ++ A +  + M  E
Sbjct: 684 LISACNHSGFVEEGKNIFEFMKQDYGIEPNMEHYANMVDLLGRAGLLEEAYSFIKAMPIE 743

Query: 297 RDDGTWSAMIK 307
            D   W  ++ 
Sbjct: 744 ADSSIWLCLLS 754



 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/298 (20%), Positives = 114/298 (38%), Gaps = 56/298 (18%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKN 81
           +  I  Y++ G  E A KVF  T        +WN+M++ Y + + P  ++ LF     + 
Sbjct: 515 SSLIDLYSKCGLPEMALKVF--TSMSTENMVAWNSMISCYSRNNLPELSIDLFNLMLSQG 572

Query: 82  IVS---------------------------------------WNGMVSGFVKNGMVAEAR 102
           I                                          N ++  +VK G    A 
Sbjct: 573 IFPDSVSITSVLVAISSTASLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAE 632

Query: 103 RVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEK----NVVSWTVMLGGLLKDS 158
            +F  M  +++++W  M+ GY   G+   A  LF  M +     + V++  ++       
Sbjct: 633 NIFKKMQHKSLITWNLMIYGYGSHGDCITALSLFDEMKKAGESPDDVTFLSLISACNHSG 692

Query: 159 RVEDARKLFDMMPVK-----DVVAVTNMIGGYCEEGRLEEARALFDEMP-KRNVVTWTTM 212
            VE+ + +F+ M        ++    NM+      G LEEA +    MP + +   W  +
Sbjct: 693 FVEEGKNIFEFMKQDYGIEPNMEHYANMVDLLGRAGLLEEAYSFIKAMPIEADSSIWLCL 752

Query: 213 VSGYARNRRVDV----ARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVK 266
           +S    +  V++    A KL  + PER   ++  ++  Y  +G   EA++    M  K
Sbjct: 753 LSASRTHHNVELGILSAEKLLRMEPERGS-TYVQLINLYMEAGLKNEAAKLLGLMKEK 809


>AT1G09190.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:2966263-2967717 REVERSE
           LENGTH=484
          Length = 484

 Score =  244 bits (624), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 131/333 (39%), Positives = 199/333 (59%), Gaps = 2/333 (0%)

Query: 247 YTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMI 306
           YT  GRM +A + FD M  + VV  N MI GF   GDV+R   +F++M ER   +W++MI
Sbjct: 147 YTSGGRMGDAQKVFDEMSERNVVVWNLMIRGFCDSGDVERGLHLFKQMSERSIVSWNSMI 206

Query: 307 KVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFD 366
               + G + EAL LF  M  +G   +                 D G+ +H+    S   
Sbjct: 207 SSLSKCGRDREALELFCEMIDQGFDPDEATVVTVLPISASLGVLDTGKWIHSTAESSGLF 266

Query: 367 QD-LYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRD 425
           +D + V +AL+  Y K GDL  A  IF +   ++VV WN++I+G + +G GE  +++F  
Sbjct: 267 KDFITVGNALVDFYCKSGDLEAATAIFRKMQRRNVVSWNTLISGSAVNGKGEFGIDLFDA 326

Query: 426 MCLSG-VPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRA 484
           M   G V P++ +F+GVL+ CSY+G+V+ G E+F  M  ++++E   EHY  MVDL+ R+
Sbjct: 327 MIEEGKVAPNEATFLGVLACCSYTGQVERGEELFGLMMERFKLEARTEHYGAMVDLMSRS 386

Query: 485 GQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLS 544
           G++ +A + ++ MP+  +A +WGSLL ACR+H  + LAEVA  +L ++EP N+G YVLLS
Sbjct: 387 GRITEAFKFLKNMPVNANAAMWGSLLSACRSHGDVKLAEVAAMELVKIEPGNSGNYVLLS 446

Query: 545 HMYASKGRWEDVEVVREKIKTRSVIKLPGYSWI 577
           ++YA +GRW+DVE VR  +K   + K  G S I
Sbjct: 447 NLYAEEGRWQDVEKVRTLMKKNRLRKSTGQSTI 479



 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 108/222 (48%), Gaps = 45/222 (20%)

Query: 87  GMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVS 146
           G+V  +   G + +A++VFD M  RNVV W  M+RG+   G+VE    LF +M E+++VS
Sbjct: 142 GVVELYTSGGRMGDAQKVFDEMSERNVVVWNLMIRGFCDSGDVERGLHLFKQMSERSIVS 201

Query: 147 WTVMLGGLLKDSRVEDARKLF----------------DMMPV------------------ 172
           W  M+  L K  R  +A +LF                 ++P+                  
Sbjct: 202 WNSMISSLSKCGRDREALELFCEMIDQGFDPDEATVVTVLPISASLGVLDTGKWIHSTAE 261

Query: 173 -----KDVVAVTN-MIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVAR 226
                KD + V N ++  YC+ G LE A A+F +M +RNVV+W T++SG A N + +   
Sbjct: 262 SSGLFKDFITVGNALVDFYCKSGDLEAATAIFRKMQRRNVVSWNTLISGSAVNGKGEFGI 321

Query: 227 KLFEVMPER-----NEVSWTAMLMGYTHSGRMREASEFFDAM 263
            LF+ M E      NE ++  +L   +++G++    E F  M
Sbjct: 322 DLFDAMIEEGKVAPNEATFLGVLACCSYTGQVERGEELFGLM 363



 Score = 86.3 bits (212), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 145/367 (39%), Gaps = 55/367 (14%)

Query: 101 ARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKD-SR 159
           A RVF  +   NV+ + +M++ Y   G   E+   F  M  + + +       LLK  S 
Sbjct: 55  ANRVFSHIQNPNVLVFNAMIKCYSLVGPPLESLSFFSSMKSRGIWADEYTYAPLLKSCSS 114

Query: 160 VEDARKLFDMMPVKDVVAV---------TNMIGGYCEEGRLEEARALFDEMPKRNVVTWT 210
           + D R  F      +++             ++  Y   GR+ +A+ +FDEM +RNVV W 
Sbjct: 115 LSDLR--FGKCVHGELIRTGFHRLGKIRIGVVELYTSGGRMGDAQKVFDEMSERNVVVWN 172

Query: 211 TMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAM------- 263
            M+ G+  +  V+    LF+ M ER+ VSW +M+   +  GR REA E F  M       
Sbjct: 173 LMIRGFCDSGDVERGLHLFKQMSERSIVSWNSMISSLSKCGRDREALELFCEMIDQGFDP 232

Query: 264 ------PVKPVVAC---------------------------NEMIMGFGFDGDVDRAKAV 290
                  V P+ A                            N ++  +   GD++ A A+
Sbjct: 233 DEATVVTVLPISASLGVLDTGKWIHSTAESSGLFKDFITVGNALVDFYCKSGDLEAATAI 292

Query: 291 FEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREG-AALNFPXXXXXXXXXXXXXX 349
           F KM+ R+  +W+ +I      G     + LF  M  EG  A N                
Sbjct: 293 FRKMQRRNVVSWNTLISGSAVNGKGEFGIDLFDAMIEEGKVAPNEATFLGVLACCSYTGQ 352

Query: 350 XDHGRQVHARLV-RSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLK-DVVMWNSMI 407
            + G ++   ++ R + +       A++ +  + G +  A       P+  +  MW S++
Sbjct: 353 VERGEELFGLMMERFKLEARTEHYGAMVDLMSRSGRITEAFKFLKNMPVNANAAMWGSLL 412

Query: 408 TGYSQHG 414
           +    HG
Sbjct: 413 SACRSHG 419



 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/290 (22%), Positives = 117/290 (40%), Gaps = 37/290 (12%)

Query: 283 DVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXX 342
           + D A  VF  ++  +   ++AMIK Y   G  LE+L  F+ M+  G   +         
Sbjct: 51  NSDYANRVFSHIQNPNVLVFNAMIKCYSLVGPPLESLSFFSSMKSRGIWADEYTYAPLLK 110

Query: 343 XXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVM 402
                     G+ VH  L+R+ F +   +   ++ +Y   G +  A+ +F+    ++VV+
Sbjct: 111 SCSSLSDLRFGKCVHGELIRTGFHRLGKIRIGVVELYTSGGRMGDAQKVFDEMSERNVVV 170

Query: 403 WNSMITGY-------------------------------SQHGLGEEALNVFRDMCLSGV 431
           WN MI G+                               S+ G   EAL +F +M   G 
Sbjct: 171 WNLMIRGFCDSGDVERGLHLFKQMSERSIVSWNSMISSLSKCGRDREALELFCEMIDQGF 230

Query: 432 PPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAV 491
            PD+ + + VL   +  G +  G+ I  + +     +  I     +VD   ++G +  A 
Sbjct: 231 DPDEATVVTVLPISASLGVLDTGKWIHSTAESSGLFKDFITVGNALVDFYCKSGDLEAAT 290

Query: 492 EIVEKMPMEPDAIVWGSLLGACRTHMK----LDLAEVAVEKLAQLEPKNA 537
            I  KM    + + W +L+     + K    +DL +  +E+  ++ P  A
Sbjct: 291 AIFRKMQ-RRNVVSWNTLISGSAVNGKGEFGIDLFDAMIEE-GKVAPNEA 338


>AT1G31430.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:11254025-11255737 REVERSE
           LENGTH=570
          Length = 570

 Score =  244 bits (623), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 149/467 (31%), Positives = 245/467 (52%), Gaps = 12/467 (2%)

Query: 159 RVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVV-----TWTTMV 213
           ++E   K+FD MP +DVV+   +I  Y   GR E+A  +F  M + + +     T  + +
Sbjct: 96  KIEITHKVFDEMPQRDVVSWNGLISSYVGNGRFEDAIGVFKRMSQESNLKFDEGTIVSTL 155

Query: 214 SGYARNRRVDVARKLFEVMPERNEVS---WTAMLMGYTHSGRMREASEFFDAMPVKPVVA 270
           S  +  + +++  +++  +    E+S     A++  +   G + +A   FD+M  K V  
Sbjct: 156 SACSALKNLEIGERIYRFVVTEFEMSVRIGNALVDMFCKCGCLDKARAVFDSMRDKNVKC 215

Query: 271 CNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGA 330
              M+ G+   G +D A+ +FE+   +D   W+AM+  Y +     EAL LF  MQ  G 
Sbjct: 216 WTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGI 275

Query: 331 ALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKW 390
             +                 + G+ +H  +  +    D  V +AL+ MY KCG +  A  
Sbjct: 276 RPDNFVLVSLLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTALVDMYAKCGCIETALE 335

Query: 391 IFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGK 450
           +F     +D   W S+I G + +G+   AL+++ +M   GV  D I+F+ VL+AC++ G 
Sbjct: 336 VFYEIKERDTASWTSLIYGLAMNGMSGRALDLYYEMENVGVRLDAITFVAVLTACNHGGF 395

Query: 451 VKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAI---VWG 507
           V EGR+IF SM  ++ V+P  EH +C++DLL RAG +++A E+++KM  E D     V+ 
Sbjct: 396 VAEGRKIFHSMTERHNVQPKSEHCSCLIDLLCRAGLLDEAEELIDKMRGESDETLVPVYC 455

Query: 508 SLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRS 567
           SLL A R +  + +AE   EKL ++E  ++  + LL+ +YAS  RWEDV  VR K+K   
Sbjct: 456 SLLSAARNYGNVKIAERVAEKLEKVEVSDSSAHTLLASVYASANRWEDVTNVRRKMKDLG 515

Query: 568 VIKLPGYSWIEVEKKAHMFVGGDN-NCHPEQPIIMKMLERLDGLLRD 613
           + K PG S IE++   H F+ GD+   HP+   I  ML +   L+ D
Sbjct: 516 IRKFPGCSSIEIDGVGHEFIVGDDLLSHPKMDEINSMLHQTTNLMLD 562



 Score =  127 bits (320), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/371 (28%), Positives = 164/371 (44%), Gaps = 72/371 (19%)

Query: 21  STGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTP-- 78
           S   +  YA +G+IE   KVFDE P   R   SWN ++++Y    +   A+ +F+     
Sbjct: 84  SNSLMGMYASLGKIEITHKVFDEMPQ--RDVVSWNGLISSYVGNGRFEDAIGVFKRMSQE 141

Query: 79  ------EKNIVSW-------------------------------NGMVSGFVKNGMVAEA 101
                 E  IVS                                N +V  F K G + +A
Sbjct: 142 SNLKFDEGTIVSTLSACSALKNLEIGERIYRFVVTEFEMSVRIGNALVDMFCKCGCLDKA 201

Query: 102 RRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVE 161
           R VFD+M  +NV  WTSMV GYV  G ++EA  LF R P K+VV WT M+ G ++ +R +
Sbjct: 202 RAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFD 261

Query: 162 DARKLFDMMPVK----DVVAVTNMIGGYCEEGRLEEARALFDEMPKRNV----VTWTTMV 213
           +A +LF  M       D   + +++ G  + G LE+ + +   + +  V    V  T +V
Sbjct: 262 EALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTALV 321

Query: 214 SGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFF----------DAM 263
             YA+   ++ A ++F  + ER+  SWT+++ G   +G    A + +          DA+
Sbjct: 322 DMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGRALDLYYEMENVGVRLDAI 381

Query: 264 P-VKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGT-----WSAMIKVYERKGFELE 317
             V  + ACN         G V   + +F  M ER +        S +I +  R G   E
Sbjct: 382 TFVAVLTACNH-------GGFVAEGRKIFHSMTERHNVQPKSEHCSCLIDLLCRAGLLDE 434

Query: 318 ALGLFARMQRE 328
           A  L  +M+ E
Sbjct: 435 AEELIDKMRGE 445



 Score =  119 bits (297), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 155/357 (43%), Gaps = 48/357 (13%)

Query: 86  NGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVV 145
           N ++  +   G +    +VFD MP R+VVSW  ++  YV  G  E+A  +F RM +++ +
Sbjct: 85  NSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRFEDAIGVFKRMSQESNL 144

Query: 146 SW-------TVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTN-MIGGYCEEGRLEEARAL 197
            +       T+     LK+  + +    F +   +  V + N ++  +C+ G L++ARA+
Sbjct: 145 KFDEGTIVSTLSACSALKNLEIGERIYRFVVTEFEMSVRIGNALVDMFCKCGCLDKARAV 204

Query: 198 FDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREAS 257
           FD M  +NV  WT+MV GY    R+D AR LFE  P ++ V WTAM+ GY    R  EA 
Sbjct: 205 FDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEAL 264

Query: 258 EFFDAMP---VKP--------VVACNE----------------------------MIMGF 278
           E F  M    ++P        +  C +                            ++  +
Sbjct: 265 ELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTALVDMY 324

Query: 279 GFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXX 338
              G ++ A  VF +++ERD  +W+++I      G    AL L+  M+  G  L+     
Sbjct: 325 AKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGRALDLYYEMENVGVRLDAITFV 384

Query: 339 XXXXXXXXXXXXDHGRQV-HARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNR 394
                         GR++ H+   R          S LI +  + G L  A+ + ++
Sbjct: 385 AVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCLIDLLCRAGLLDEAEELIDK 441



 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 93/177 (52%), Gaps = 4/177 (2%)

Query: 353 GRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQ 412
           G +VH   V++  + D YV+++L+ MY   G +     +F+  P +DVV WN +I+ Y  
Sbjct: 65  GEKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVG 124

Query: 413 HGLGEEALNVFRDMCL-SGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGI 471
           +G  E+A+ VF+ M   S +  D+ + +  LSACS    ++ G  I+  +  ++++   I
Sbjct: 125 NGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVVTEFEMSVRI 184

Query: 472 EHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEK 528
            +   +VD+  + G ++ A  + + M  + +   W S++    +  ++D A V  E+
Sbjct: 185 GN--ALVDMFCKCGCLDKARAVFDSMR-DKNVKCWTSMVFGYVSTGRIDEARVLFER 238


>AT1G74600.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:28025153-28027840 REVERSE LENGTH=895
          Length = 895

 Score =  242 bits (618), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 165/633 (26%), Positives = 296/633 (46%), Gaps = 83/633 (13%)

Query: 11  CMVQVRFQCTSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQA 70
           C  +  F CT+   +  YA+ G +  A +VF   P+   +  SW  M++ Y +++    A
Sbjct: 280 CGAEDVFVCTAI--VDLYAKCGHMAEAMEVFSRIPN--PSVVSWTVMLSGYTKSNDAFSA 335

Query: 71  VTLFE----TTPEKNIVSWNGMVSGFVKNGMVAEARRV----FDAMPVRNVVSWTSMVRG 122
           + +F+    +  E N  +   ++S   +  MV EA +V    F +    +     +++  
Sbjct: 336 LEIFKEMRHSGVEINNCTVTSVISACGRPSMVCEASQVHAWVFKSGFYLDSSVAAALISM 395

Query: 123 YVQEGNVEEAERLFWRMPE---KNVVSWTVMLGGLLKDSRVEDARKLF------------ 167
           Y + G+++ +E++F  + +   +N+V+  VM+    +  +   A +LF            
Sbjct: 396 YSKSGDIDLSEQVFEDLDDIQRQNIVN--VMITSFSQSKKPGKAIRLFTRMLQEGLRTDE 453

Query: 168 ----DMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVD 223
                ++ V D + +   + GY     L+    L       ++   +++ + Y++   ++
Sbjct: 454 FSVCSLLSVLDCLNLGKQVHGY----TLKSGLVL-------DLTVGSSLFTLYSKCGSLE 502

Query: 224 VARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAM-------------------P 264
            + KLF+ +P ++   W +M+ G+   G +REA   F  M                    
Sbjct: 503 ESYKLFQGIPFKDNACWASMISGFNEYGYLREAIGLFSEMLDDGTSPDESTLAAVLTVCS 562

Query: 265 VKPVVACNEMIMGFGFDGDVDR--------------------AKAVFEKMRERDDGTWSA 304
             P +   + I G+     +D+                    A+ V++++ E D  + S+
Sbjct: 563 SHPSLPRGKEIHGYTLRAGIDKGMDLGSALVNMYSKCGSLKLARQVYDRLPELDPVSCSS 622

Query: 305 MIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSE 364
           +I  Y + G   +   LF  M   G  ++                   G QVHA + +  
Sbjct: 623 LISGYSQHGLIQDGFLLFRDMVMSGFTMDSFAISSILKAAALSDESSLGAQVHAYITKIG 682

Query: 365 FDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFR 424
              +  V S+L+TMY K G +      F++    D++ W ++I  Y+QHG   EAL V+ 
Sbjct: 683 LCTEPSVGSSLLTMYSKFGSIDDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYN 742

Query: 425 DMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRA 484
            M   G  PD ++F+GVLSACS+ G V+E      SM   Y +EP   HY CMVD LGR+
Sbjct: 743 LMKEKGFKPDKVTFVGVLSACSHGGLVEESYFHLNSMVKDYGIEPENRHYVCMVDALGRS 802

Query: 485 GQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLS 544
           G++ +A   +  M ++PDA+VWG+LL AC+ H +++L +VA +K  +LEP +AG Y+ LS
Sbjct: 803 GRLREAESFINNMHIKPDALVWGTLLAACKIHGEVELGKVAAKKAIELEPSDAGAYISLS 862

Query: 545 HMYASKGRWEDVEVVREKIKTRSVIKLPGYSWI 577
           ++ A  G W++VE  R+ +K   V K PG+S +
Sbjct: 863 NILAEVGEWDEVEETRKLMKGTGVQKEPGWSSV 895



 Score =  155 bits (392), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 132/550 (24%), Positives = 238/550 (43%), Gaps = 68/550 (12%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTP----EK 80
           +S Y+  G + +A K+FD  P       S N M++ Y Q     +++  F        E 
Sbjct: 91  LSWYSNSGSMADAAKLFDTIPQ--PDVVSCNIMISGYKQHRLFEESLRFFSKMHFLGFEA 148

Query: 81  NIVSWNGMVSG-----------------------------------FVKNGMVAEARRVF 105
           N +S+  ++S                                    F KN    +A +VF
Sbjct: 149 NEISYGSVISACSALQAPLFSELVCCHTIKMGYFFYEVVESALIDVFSKNLRFEDAYKVF 208

Query: 106 DAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM----PEKNVVSWTVMLGGL-----LK 156
                 NV  W +++ G ++  N      LF  M     + +  +++ +L        L+
Sbjct: 209 RDSLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCVGFQKPDSYTYSSVLAACASLEKLR 268

Query: 157 DSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGY 216
             +V  AR +      +DV   T ++  Y + G + EA  +F  +P  +VV+WT M+SGY
Sbjct: 269 FGKVVQARVI--KCGAEDVFVCTAIVDLYAKCGHMAEAMEVFSRIPNPSVVSWTVMLSGY 326

Query: 217 ARNRRVDVARKLFEVM----PERNEVSWTAMLMGYTHSGRMREASE-----FFDAMPVKP 267
            ++     A ++F+ M     E N  + T+++        + EAS+     F     +  
Sbjct: 327 TKSNDAFSALEIFKEMRHSGVEINNCTVTSVISACGRPSMVCEASQVHAWVFKSGFYLDS 386

Query: 268 VVACNEMIMGFGFDGDVDRAKAVFEKMRE-RDDGTWSAMIKVYERKGFELEALGLFARMQ 326
            VA   +I  +   GD+D ++ VFE + + +     + MI  + +     +A+ LF RM 
Sbjct: 387 SVAA-ALISMYSKSGDIDLSEQVFEDLDDIQRQNIVNVMITSFSQSKKPGKAIRLFTRML 445

Query: 327 REGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLV 386
           +EG   +                 + G+QVH   ++S    DL V S+L T+Y KCG L 
Sbjct: 446 QEGLRTD---EFSVCSLLSVLDCLNLGKQVHGYTLKSGLVLDLTVGSSLFTLYSKCGSLE 502

Query: 387 RAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACS 446
            +  +F   P KD   W SMI+G++++G   EA+ +F +M   G  PD+ +   VL+ CS
Sbjct: 503 ESYKLFQGIPFKDNACWASMISGFNEYGYLREAIGLFSEMLDDGTSPDESTLAAVLTVCS 562

Query: 447 YSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVW 506
               +  G+EI      +  ++ G++  + +V++  + G +  A ++ +++P E D +  
Sbjct: 563 SHPSLPRGKEI-HGYTLRAGIDKGMDLGSALVNMYSKCGSLKLARQVYDRLP-ELDPVSC 620

Query: 507 GSLLGACRTH 516
            SL+     H
Sbjct: 621 SSLISGYSQH 630



 Score =  119 bits (299), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 111/481 (23%), Positives = 204/481 (42%), Gaps = 45/481 (9%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVV 114
           N       QAH   + +  F+    K+++SW      +  +G +A+A ++FD +P  +VV
Sbjct: 63  NLRTTKILQAHLLRRYLLPFDVFLTKSLLSW------YSNSGSMADAAKLFDTIPQPDVV 116

Query: 115 SWTSMVRGYVQEGNVEEAERLFWRMP----EKNVVSWTVMLGGLLKDSRVEDARKLFDMM 170
           S   M+ GY Q    EE+ R F +M     E N +S+    G ++       A    +++
Sbjct: 117 SCNIMISGYKQHRLFEESLRFFSKMHFLGFEANEISY----GSVISACSALQAPLFSELV 172

Query: 171 PVKDV--------VAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRV 222
               +        V  + +I  + +  R E+A  +F +    NV  W T+++G  RN+  
Sbjct: 173 CCHTIKMGYFFYEVVESALIDVFSKNLRFEDAYKVFRDSLSANVYCWNTIIAGALRNQNY 232

Query: 223 DVARKLFEVM----PERNEVSWTAMLMGYTHSGRMREASEFFDAMPVK----PVVACNEM 274
                LF  M     + +  +++++L       ++R   +   A  +K     V  C  +
Sbjct: 233 GAVFDLFHEMCVGFQKPDSYTYSSVLAACASLEKLRFG-KVVQARVIKCGAEDVFVCTAI 291

Query: 275 IMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNF 334
           +  +   G +  A  VF ++      +W+ M+  Y +      AL +F  M+  G  +N 
Sbjct: 292 VDLYAKCGHMAEAMEVFSRIPNPSVVSWTVMLSGYTKSNDAFSALEIFKEMRHSGVEINN 351

Query: 335 PXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNR 394
                               QVHA + +S F  D  VA+ALI+MY K GD+  ++ +F  
Sbjct: 352 CTVTSVISACGRPSMVCEASQVHAWVFKSGFYLDSSVAAALISMYSKSGDIDLSEQVFE- 410

Query: 395 YPLKDVV---MWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSA--CSYSG 449
             L D+    + N MIT +SQ     +A+ +F  M   G+  D+ S   +LS   C   G
Sbjct: 411 -DLDDIQRQNIVNVMITSFSQSKKPGKAIRLFTRMLQEGLRTDEFSVCSLLSVLDCLNLG 469

Query: 450 KVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSL 509
           K   G  +   +     V       + +  L  + G + ++ ++ + +P + +A  W S+
Sbjct: 470 KQVHGYTLKSGLVLDLTVG------SSLFTLYSKCGSLEESYKLFQGIPFKDNA-CWASM 522

Query: 510 L 510
           +
Sbjct: 523 I 523



 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 102/250 (40%), Gaps = 47/250 (18%)

Query: 368 DLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMC 427
           D+++  +L++ Y   G +  A  +F+  P  DVV  N MI+GY QH L EE+L  F  M 
Sbjct: 83  DVFLTKSLLSWYSNSGSMADAAKLFDTIPQPDVVSCNIMISGYKQHRLFEESLRFFSKMH 142

Query: 428 LSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHY----ACMVDLLGR 483
             G   ++IS+  V+SACS          +F  + C + ++ G   Y    + ++D+  +
Sbjct: 143 FLGFEANEISYGSVISACS-----ALQAPLFSELVCCHTIKMGYFFYEVVESALIDVFSK 197

Query: 484 AGQVNDAVEIVEKMP----------------------------------MEPDAIVWGSL 509
             +  DA ++                                        +PD+  + S+
Sbjct: 198 NLRFEDAYKVFRDSLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCVGFQKPDSYTYSSV 257

Query: 510 LGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVI 569
           L AC +  KL   +V   ++ +   ++      +  +YA  G   +   V  +I   SV+
Sbjct: 258 LAACASLEKLRFGKVVQARVIKCGAEDVFVCTAIVDLYAKCGHMAEAMEVFSRIPNPSVV 317

Query: 570 K----LPGYS 575
                L GY+
Sbjct: 318 SWTVMLSGYT 327


>AT5G08510.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:2753099-2754731 FORWARD
           LENGTH=511
          Length = 511

 Score =  239 bits (611), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 148/470 (31%), Positives = 245/470 (52%), Gaps = 14/470 (2%)

Query: 150 MLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEM------PK 203
           +L  LL    +  ARKLFD            +I  Y    +  E+  L++ +      P 
Sbjct: 22  LLQRLLLIPNLVYARKLFDHHQNSCTFLYNKLIQAYYVHHQPHESIVLYNLLSFDGLRPS 81

Query: 204 R---NVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFF 260
               N +   +     AR  R+ +  + F    E +    T ++  Y   G +  A   F
Sbjct: 82  HHTFNFIFAASASFSSARPLRL-LHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVF 140

Query: 261 DAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALG 320
           D M  + V   N MI G+   GD+  A  +F+ M  ++  +W+ +I  + + G   EAL 
Sbjct: 141 DEMSKRDVPVWNAMITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALK 200

Query: 321 LFARMQREGAAL-NFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMY 379
           +F  M+++ +   N                 + GR++      + F  ++YV +A I MY
Sbjct: 201 MFLCMEKDKSVKPNHITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMY 260

Query: 380 VKCGDLVRAKWIFNRY-PLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISF 438
            KCG +  AK +F      +++  WNSMI   + HG  +EAL +F  M   G  PD ++F
Sbjct: 261 SKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTF 320

Query: 439 IGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMP 498
           +G+L AC + G V +G+E+F+SM+  +++ P +EHY CM+DLLGR G++ +A ++++ MP
Sbjct: 321 VGLLLACVHGGMVVKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMP 380

Query: 499 MEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEV 558
           M+PDA+VWG+LLGAC  H  +++AE+A E L +LEP N G  V++S++YA+  +W+ V  
Sbjct: 381 MKPDAVVWGTLLGACSFHGNVEIAEIASEALFKLEPTNPGNCVIMSNIYAANEKWDGVLR 440

Query: 559 VREKIKTRSVIKLPGYSW-IEVEKKAHMFVGGDNNCHPEQPIIMKMLERL 607
           +R+ +K  ++ K  GYS+ +EV    H F   D + HP    I ++LE +
Sbjct: 441 MRKLMKKETMTKAAGYSYFVEVGVDVHKFTVEDKS-HPRSYEIYQVLEEI 489



 Score =  115 bits (288), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 109/429 (25%), Positives = 188/429 (43%), Gaps = 63/429 (14%)

Query: 14  QVRFQCTSTGA------ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQP 67
           Q+   C  TG       + R   I  +  ARK+FD   H +  T  +N ++ AY+  HQP
Sbjct: 6   QLHAHCLRTGVDETKDLLQRLLLIPNLVYARKLFDH--HQNSCTFLYNKLIQAYYVHHQP 63

Query: 68  HQAVTLFETTPEKNIVSWNGM-VSGFVKNGMVAEARRVFDAMPVRNVVS----------- 115
           H+++ L+      N++S++G+  S    N + A +     A P+R + S           
Sbjct: 64  HESIVLY------NLLSFDGLRPSHHTFNFIFAASASFSSARPLRLLHSQFFRSGFESDS 117

Query: 116 --WTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVK 173
              T+++  Y + G +  A R+F  M +++V  W  M+ G  +   ++ A +LFD MP K
Sbjct: 118 FCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGDMKAAMELFDSMPRK 177

Query: 174 DVVAVTNMIGGYCEEGRLEEARALF-----DEMPKRNVVTWTTMVSGYARNRRVDVARKL 228
           +V + T +I G+ + G   EA  +F     D+  K N +T  +++   A    +++ R+L
Sbjct: 178 NVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIGRRL 237

Query: 229 FEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAK 288
                                 G  RE + FFD + V     CN  I  +   G +D AK
Sbjct: 238 ---------------------EGYARE-NGFFDNIYV-----CNATIEMYSKCGMIDVAK 270

Query: 289 AVFEKM-RERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXX 347
            +FE++  +R+  +W++MI      G   EAL LFA+M REG   +              
Sbjct: 271 RLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHG 330

Query: 348 XXXDHGRQVHARLVR-SEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLK-DVVMWNS 405
                G+++   +    +    L     +I +  + G L  A  +    P+K D V+W +
Sbjct: 331 GMVVKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGT 390

Query: 406 MITGYSQHG 414
           ++   S HG
Sbjct: 391 LLGACSFHG 399


>AT4G39952.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:18527680-18530007 FORWARD
           LENGTH=775
          Length = 775

 Score =  239 bits (610), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 167/618 (27%), Positives = 294/618 (47%), Gaps = 67/618 (10%)

Query: 20  TSTGA--ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQ----------- 66
           T+ GA  +  Y++ G +++A  VFDE P   R   +W A+++ + Q  +           
Sbjct: 161 TAVGASFVYFYSKCGFLQDACLVFDEMPD--RDVVAWTAIISGHVQNGESEGGLGYLCKM 218

Query: 67  -----------PHQAVTLFETTPEKNIVSWNGMVSGF-VKNGMVA--------------- 99
                      P      F+       +     + GF VKNG+ +               
Sbjct: 219 HSAGSDVDKPNPRTLECGFQACSNLGALKEGRCLHGFAVKNGLASSKFVQSSMFSFYSKS 278

Query: 100 ----EARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLL 155
               EA   F  +   ++ SWTS++    + G++EE+  +FW M  K +    V++  L+
Sbjct: 279 GNPSEAYLSFRELGDEDMFSWTSIIASLARSGDMEESFDMFWEMQNKGMHPDGVVISCLI 338

Query: 156 KD---SRVEDARKLFDMMPVK-----DVVAVTNMIGGYCEEGRLEEARALFDEMPKR-NV 206
            +     +    K F    ++     D     +++  YC+   L  A  LF  + +  N 
Sbjct: 339 NELGKMMLVPQGKAFHGFVIRHCFSLDSTVCNSLLSMYCKFELLSVAEKLFCRISEEGNK 398

Query: 207 VTWTTMVSGYARNRR----VDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDA 262
             W TM+ GY + +     +++ RK+  +  E +  S T+++   +H G +         
Sbjct: 399 EAWNTMLKGYGKMKCHVKCIELFRKIQNLGIEIDSASATSVISSCSHIGAVLLGKSL-HC 457

Query: 263 MPVKP-----VVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELE 317
             VK      +   N +I  +G  GD+  A  +F +  + +  TW+AMI  Y       +
Sbjct: 458 YVVKTSLDLTISVVNSLIDLYGKMGDLTVAWRMFCE-ADTNVITWNAMIASYVHCEQSEK 516

Query: 318 ALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALIT 377
           A+ LF RM  E    +                 + G+ +H  +  +E + +L +++ALI 
Sbjct: 517 AIALFDRMVSENFKPSSITLVTLLMACVNTGSLERGQMIHRYITETEHEMNLSLSAALID 576

Query: 378 MYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDIS 437
           MY KCG L +++ +F+    KD V WN MI+GY  HG  E A+ +F  M  S V P   +
Sbjct: 577 MYAKCGHLEKSRELFDAGNQKDAVCWNVMISGYGMHGDVESAIALFDQMEESDVKPTGPT 636

Query: 438 FIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKM 497
           F+ +LSAC+++G V++G+++F  M  +Y V+P ++HY+C+VDLL R+G + +A   V  M
Sbjct: 637 FLALLSACTHAGLVEQGKKLFLKMH-QYDVKPNLKHYSCLVDLLSRSGNLEEAESTVMSM 695

Query: 498 PMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVE 557
           P  PD ++WG+LL +C TH + ++     E+    +P+N G Y++L++MY++ G+WE+ E
Sbjct: 696 PFSPDGVIWGTLLSSCMTHGEFEMGIRMAERAVASDPQNDGYYIMLANMYSAAGKWEEAE 755

Query: 558 VVREKIKTRSVIKLPGYS 575
             RE ++   V K  G+S
Sbjct: 756 RAREMMRESGVGKRAGHS 773



 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 84/192 (43%), Gaps = 4/192 (2%)

Query: 268 VVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQR 327
           +   +++I  +   G  + +  VF  +  RD   W+++IK +   G    +L  F  M  
Sbjct: 59  IFVASKLISSYASYGKPNLSSRVFHLVTRRDIFLWNSIIKAHFSNGDYARSLCFFFSMLL 118

Query: 328 EGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVR-SEFDQDLYVASALITMYVKCGDLV 386
            G + +                   G  VH  +++   FD++  V ++ +  Y KCG L 
Sbjct: 119 SGQSPDHFTAPMVVSACAELLWFHVGTFVHGLVLKHGGFDRNTAVGASFVYFYSKCGFLQ 178

Query: 387 RAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGV---PPDDISFIGVLS 443
            A  +F+  P +DVV W ++I+G+ Q+G  E  L     M  +G     P+  +      
Sbjct: 179 DACLVFDEMPDRDVVAWTAIISGHVQNGESEGGLGYLCKMHSAGSDVDKPNPRTLECGFQ 238

Query: 444 ACSYSGKVKEGR 455
           ACS  G +KEGR
Sbjct: 239 ACSNLGALKEGR 250



 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 73/157 (46%), Gaps = 1/157 (0%)

Query: 354 RQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQH 413
           R+ +A ++     ++++VAS LI+ Y   G    +  +F+    +D+ +WNS+I  +  +
Sbjct: 44  RKHNALIITGGLSENIFVASKLISSYASYGKPNLSSRVFHLVTRRDIFLWNSIIKAHFSN 103

Query: 414 GLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEH 473
           G    +L  F  M LSG  PD  +   V+SAC+       G  +   +      +     
Sbjct: 104 GDYARSLCFFFSMLLSGQSPDHFTAPMVVSACAELLWFHVGTFVHGLVLKHGGFDRNTAV 163

Query: 474 YACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLL 510
            A  V    + G + DA  + ++MP + D + W +++
Sbjct: 164 GASFVYFYSKCGFLQDACLVFDEMP-DRDVVAWTAII 199



 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 81/170 (47%), Gaps = 15/170 (8%)

Query: 10  VCMVQVRFQCTSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQ 69
           + +V +   C +TG++ R    GQ+    +   ET H    + S  A++  Y +     +
Sbjct: 534 ITLVTLLMACVNTGSLER----GQM--IHRYITETEHEMNLSLS-AALIDMYAKCGHLEK 586

Query: 70  AVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVV----SWTSMVRGYVQ 125
           +  LF+   +K+ V WN M+SG+  +G V  A  +FD M   +V     ++ +++     
Sbjct: 587 SRELFDAGNQKDAVCWNVMISGYGMHGDVESAIALFDQMEESDVKPTGPTFLALLSACTH 646

Query: 126 EGNVEEAERLFWRMPE----KNVVSWTVMLGGLLKDSRVEDARKLFDMMP 171
            G VE+ ++LF +M +     N+  ++ ++  L +   +E+A      MP
Sbjct: 647 AGLVEQGKKLFLKMHQYDVKPNLKHYSCLVDLLSRSGNLEEAESTVMSMP 696


>AT2G37320.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:15667223-15668725 FORWARD
           LENGTH=500
          Length = 500

 Score =  238 bits (606), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 124/331 (37%), Positives = 199/331 (60%), Gaps = 3/331 (0%)

Query: 265 VKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFAR 324
           +  V   + +++ +   G+V+ A  VFE+M ER+  +W+AMI  + ++      L L+++
Sbjct: 152 ISDVYLGSSLVVLYRDSGEVENAYKVFEEMPERNVVSWTAMISGFAQEWRVDICLKLYSK 211

Query: 325 MQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGD 384
           M++  +  N                   GR VH + +       L+++++LI+MY KCGD
Sbjct: 212 MRKSTSDPNDYTFTALLSACTGSGALGQGRSVHCQTLHMGLKSYLHISNSLISMYCKCGD 271

Query: 385 LVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMC-LSGVPPDDISFIGVLS 443
           L  A  IF+++  KDVV WNSMI GY+QHGL  +A+ +F  M   SG  PD I+++GVLS
Sbjct: 272 LKDAFRIFDQFSNKDVVSWNSMIAGYAQHGLAMQAIELFELMMPKSGTKPDAITYLGVLS 331

Query: 444 ACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDA 503
           +C ++G VKEGR+ F  M  ++ ++P + HY+C+VDLLGR G + +A+E++E MPM+P++
Sbjct: 332 SCRHAGLVKEGRKFFNLMA-EHGLKPELNHYSCLVDLLGRFGLLQEALELIENMPMKPNS 390

Query: 504 IVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKI 563
           ++WGSLL +CR H  +     A E+   LEP  A  +V L+++YAS G W++   VR+ +
Sbjct: 391 VIWGSLLFSCRVHGDVWTGIRAAEERLMLEPDCAATHVQLANLYASVGYWKEAATVRKLM 450

Query: 564 KTRSVIKLPGYSWIEVEKKAHMFVGGD-NNC 593
           K + +   PG SWIE+     MF   D +NC
Sbjct: 451 KDKGLKTNPGCSWIEINNYVFMFKAEDGSNC 481



 Score = 96.7 bits (239), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 111/200 (55%), Gaps = 20/200 (10%)

Query: 86  NGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM----PE 141
           + +V  +  +G V  A +VF+ MP RNVVSWT+M+ G+ QE  V+   +L+ +M     +
Sbjct: 159 SSLVVLYRDSGEVENAYKVFEEMPERNVVSWTAMISGFAQEWRVDICLKLYSKMRKSTSD 218

Query: 142 KNVVSWTVML-----GGLLKDSRVEDARKLFDMMPVKDVVAVTN-MIGGYCEEGRLEEAR 195
            N  ++T +L      G L   R    + L   M +K  + ++N +I  YC+ G L++A 
Sbjct: 219 PNDYTFTALLSACTGSGALGQGRSVHCQTLH--MGLKSYLHISNSLISMYCKCGDLKDAF 276

Query: 196 ALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPER-----NEVSWTAMLMGYTHS 250
            +FD+   ++VV+W +M++GYA++     A +LFE+M  +     + +++  +L    H+
Sbjct: 277 RIFDQFSNKDVVSWNSMIAGYAQHGLAMQAIELFELMMPKSGTKPDAITYLGVLSSCRHA 336

Query: 251 GRMREASEFFDAMP---VKP 267
           G ++E  +FF+ M    +KP
Sbjct: 337 GLVKEGRKFFNLMAEHGLKP 356



 Score = 95.1 bits (235), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 144/322 (44%), Gaps = 15/322 (4%)

Query: 105 FDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDAR 164
           FD    +N VS  S++   + E +    +R  W      + S  V   GL +D R     
Sbjct: 86  FDLSRTKNGVS--SVLEEVMLEDSSSSVKRDGWSFDAYGLSS-AVRSCGLNRDFRTGSGF 142

Query: 165 KLFDMMP--VKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRV 222
               +    + DV   ++++  Y + G +E A  +F+EMP+RNVV+WT M+SG+A+  RV
Sbjct: 143 HCLALKGGFISDVYLGSSLVVLYRDSGEVENAYKVFEEMPERNVVSWTAMISGFAQEWRV 202

Query: 223 DVARKLFEVM----PERNEVSWTAMLMGYTHSGRMREASEFFDA---MPVKPVV-ACNEM 274
           D+  KL+  M     + N+ ++TA+L   T SG + +          M +K  +   N +
Sbjct: 203 DICLKLYSKMRKSTSDPNDYTFTALLSACTGSGALGQGRSVHCQTLHMGLKSYLHISNSL 262

Query: 275 IMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQ-REGAALN 333
           I  +   GD+  A  +F++   +D  +W++MI  Y + G  ++A+ LF  M  + G   +
Sbjct: 263 ISMYCKCGDLKDAFRIFDQFSNKDVVSWNSMIAGYAQHGLAMQAIELFELMMPKSGTKPD 322

Query: 334 FPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFN 393
                              GR+    +       +L   S L+ +  + G L  A  +  
Sbjct: 323 AITYLGVLSSCRHAGLVKEGRKFFNLMAEHGLKPELNHYSCLVDLLGRFGLLQEALELIE 382

Query: 394 RYPLK-DVVMWNSMITGYSQHG 414
             P+K + V+W S++     HG
Sbjct: 383 NMPMKPNSVIWGSLLFSCRVHG 404



 Score = 85.1 bits (209), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 134/302 (44%), Gaps = 25/302 (8%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVR--- 111
           +++V  Y  + +   A  +FE  PE+N+VSW  M+SGF +   V    +++  M      
Sbjct: 159 SSLVVLYRDSGEVENAYKVFEEMPERNVVSWTAMISGFAQEWRVDICLKLYSKMRKSTSD 218

Query: 112 -NVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLL----KDSRVEDARKL 166
            N  ++T+++      G + +   +  +     + S+  +   L+    K   ++DA ++
Sbjct: 219 PNDYTFTALLSACTGSGALGQGRSVHCQTLHMGLKSYLHISNSLISMYCKCGDLKDAFRI 278

Query: 167 FDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEM-----PKRNVVTWTTMVSGYARNRR 221
           FD    KDVV+  +MI GY + G   +A  LF+ M      K + +T+  ++S       
Sbjct: 279 FDQFSNKDVVSWNSMIAGYAQHGLAMQAIELFELMMPKSGTKPDAITYLGVLSSCRHAGL 338

Query: 222 VDVARKLFEVM------PERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKP-VVACNEM 274
           V   RK F +M      PE N  S    L+G    G ++EA E  + MP+KP  V    +
Sbjct: 339 VKEGRKFFNLMAEHGLKPELNHYSCLVDLLG--RFGLLQEALELIENMPMKPNSVIWGSL 396

Query: 275 IMGFGFDGDV-DRAKAVFEKMRERDD--GTWSAMIKVYERKGFELEALGLFARMQREGAA 331
           +      GDV    +A  E++    D   T   +  +Y   G+  EA  +   M+ +G  
Sbjct: 397 LFSCRVHGDVWTGIRAAEERLMLEPDCAATHVQLANLYASVGYWKEAATVRKLMKDKGLK 456

Query: 332 LN 333
            N
Sbjct: 457 TN 458



 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 122/265 (46%), Gaps = 39/265 (14%)

Query: 281 DGDVDRAK----AVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPX 336
           D D+ R K    +V E++   D    S+ +K   R G+  +A GL + ++  G   +F  
Sbjct: 85  DFDLSRTKNGVSSVLEEVMLEDS---SSSVK---RDGWSFDAYGLSSAVRSCGLNRDFRT 138

Query: 337 XXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYP 396
                           G   H   ++  F  D+Y+ S+L+ +Y   G++  A  +F   P
Sbjct: 139 ----------------GSGFHCLALKGGFISDVYLGSSLVVLYRDSGEVENAYKVFEEMP 182

Query: 397 LKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGRE 456
            ++VV W +MI+G++Q    +  L ++  M  S   P+D +F  +LSAC+ SG + +GR 
Sbjct: 183 ERNVVSWTAMISGFAQEWRVDICLKLYSKMRKSTSDPNDYTFTALLSACTGSGALGQGR- 241

Query: 457 IFESMKCKYQVEPGIEHYA----CMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGA 512
              S+ C+  +  G++ Y      ++ +  + G + DA  I ++     D + W S++  
Sbjct: 242 ---SVHCQ-TLHMGLKSYLHISNSLISMYCKCGDLKDAFRIFDQFS-NKDVVSWNSMIAG 296

Query: 513 CRTHMKLDLAEVAVEKLAQLEPKNA 537
              H    LA  A+E    + PK+ 
Sbjct: 297 YAQH---GLAMQAIELFELMMPKSG 318



 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 85/208 (40%), Gaps = 47/208 (22%)

Query: 20  TSTGAISRYARIGQIENARKVFDETPH--IHRTTSSWNAMVAAYFQAHQPHQAVTLFETT 77
           T T  +S     G +   R V  +T H  +       N++++ Y +      A  +F+  
Sbjct: 223 TFTALLSACTGSGALGQGRSVHCQTLHMGLKSYLHISNSLISMYCKCGDLKDAFRIFDQF 282

Query: 78  PEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFW 137
             K++VSWN M++G+ ++G+  +A  +F+ M                             
Sbjct: 283 SNKDVVSWNSMIAGYAQHGLAMQAIELFELM----------------------------- 313

Query: 138 RMPEKNVVSWTVMLGGLLKDSR----VEDARKLFDMMP-------VKDVVAVTNMIGGYC 186
            MP+       +   G+L   R    V++ RK F++M        +     + +++G + 
Sbjct: 314 -MPKSGTKPDAITYLGVLSSCRHAGLVKEGRKFFNLMAEHGLKPELNHYSCLVDLLGRF- 371

Query: 187 EEGRLEEARALFDEMP-KRNVVTWTTMV 213
             G L+EA  L + MP K N V W +++
Sbjct: 372 --GLLQEALELIENMPMKPNSVIWGSLL 397


>AT1G71490.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:26933326-26935371 REVERSE
           LENGTH=681
          Length = 681

 Score =  234 bits (596), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 166/596 (27%), Positives = 285/596 (47%), Gaps = 50/596 (8%)

Query: 58  VAAYFQAHQPH-QAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNV--- 113
           +  ++ A   H +A ++ E +   + + WN +++ + KN +  E    +  M  + +   
Sbjct: 84  LVTFYSAFNLHNEAQSIIENSDILHPLPWNVLIASYAKNELFEEVIAAYKRMVSKGIRPD 143

Query: 114 -VSWTSMVR----------GYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVED 162
             ++ S+++          G V  G++E +        + ++     ++    +   +  
Sbjct: 144 AFTYPSVLKACGETLDVAFGRVVHGSIEVSSY------KSSLYVCNALISMYKRFRNMGI 197

Query: 163 ARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEM----PKRNVVTWTTMVSGYAR 218
           AR+LFD M  +D V+   +I  Y  EG   EA  LFD+M     + +V+TW  +  G  +
Sbjct: 198 ARRLFDRMFERDAVSWNAVINCYASEGMWSEAFELFDKMWFSGVEVSVITWNIISGGCLQ 257

Query: 219 NRRVDVARKLFEVMPERN---EVSWTAMLMGYTHS---GRMREASEF--------FDAMP 264
                 A  L   M  RN    +   AM++G       G +R   E         +D + 
Sbjct: 258 TGNYVGALGLISRM--RNFPTSLDPVAMIIGLKACSLIGAIRLGKEIHGLAIHSSYDGID 315

Query: 265 -VKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFA 323
            V+     N +I  +    D+  A  VF +  E    TW+++I  Y +     EA  L  
Sbjct: 316 NVR-----NTLITMYSKCKDLRHALIVFRQTEENSLCTWNSIISGYAQLNKSEEASHLLR 370

Query: 324 RMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVA-SALITMYVKC 382
            M   G   N                  HG++ H  ++R +  +D  +  ++L+ +Y K 
Sbjct: 371 EMLVAGFQPNSITLASILPLCARIANLQHGKEFHCYILRRKCFKDYTMLWNSLVDVYAKS 430

Query: 383 GDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVL 442
           G +V AK + +    +D V + S+I GY   G G  AL +F++M  SG+ PD ++ + VL
Sbjct: 431 GKIVAAKQVSDLMSKRDEVTYTSLIDGYGNQGEGGVALALFKEMTRSGIKPDHVTVVAVL 490

Query: 443 SACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPD 502
           SACS+S  V EG  +F  M+C+Y + P ++H++CMVDL GRAG +  A +I+  MP +P 
Sbjct: 491 SACSHSKLVHEGERLFMKMQCEYGIRPCLQHFSCMVDLYGRAGFLAKAKDIIHNMPYKPS 550

Query: 503 AIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREK 562
              W +LL AC  H    + + A EKL +++P+N G YVL+++MYA+ G W  +  VR  
Sbjct: 551 GATWATLLNACHIHGNTQIGKWAAEKLLEMKPENPGYYVLIANMYAAAGSWSKLAEVRTI 610

Query: 563 IKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRD-AGYS 617
           ++   V K PG +WI+ +    +F  GD +  PE      +L+ L+ L++D AGY+
Sbjct: 611 MRDLGVKKDPGCAWIDTDSGFSLFSVGDTS-SPEACNTYPLLDGLNQLMKDNAGYA 665



 Score = 82.8 bits (203), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 86/384 (22%), Positives = 162/384 (42%), Gaps = 25/384 (6%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVR--- 111
           NA+++ Y +      A  LF+   E++ VSWN +++ +   GM +EA  +FD M      
Sbjct: 183 NALISMYKRFRNMGIARRLFDRMFERDAVSWNAVINCYASEGMWSEAFELFDKMWFSGVE 242

Query: 112 -NVVSWTSMVRGYVQEGNVEEAERLFWRMPE-KNVVSWTVMLGGLLKDSRVEDAR---KL 166
            +V++W  +  G +Q GN   A  L  RM      +    M+ GL   S +   R   ++
Sbjct: 243 VSVITWNIISGGCLQTGNYVGALGLISRMRNFPTSLDPVAMIIGLKACSLIGAIRLGKEI 302

Query: 167 FDMMPVKDVVAVTN----MIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRV 222
             +        + N    +I  Y +   L  A  +F +  + ++ TW +++SGYA+  + 
Sbjct: 303 HGLAIHSSYDGIDNVRNTLITMYSKCKDLRHALIVFRQTEENSLCTWNSIISGYAQLNKS 362

Query: 223 DVARKLFEVMP----ERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKP-----VVACNE 273
           + A  L   M     + N ++  ++L        ++   EF   +  +       +  N 
Sbjct: 363 EEASHLLREMLVAGFQPNSITLASILPLCARIANLQHGKEFHCYILRRKCFKDYTMLWNS 422

Query: 274 MIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALN 333
           ++  +   G +  AK V + M +RD+ T++++I  Y  +G    AL LF  M R G   +
Sbjct: 423 LVDVYAKSGKIVAAKQVSDLMSKRDEVTYTSLIDGYGNQGEGGVALALFKEMTRSGIKPD 482

Query: 334 FPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFD--QDLYVASALITMYVKCGDLVRAKWI 391
                              G ++  ++ + E+     L   S ++ +Y + G L +AK I
Sbjct: 483 HVTVVAVLSACSHSKLVHEGERLFMKM-QCEYGIRPCLQHFSCMVDLYGRAGFLAKAKDI 541

Query: 392 FNRYPLKDV-VMWNSMITGYSQHG 414
            +  P K     W +++     HG
Sbjct: 542 IHNMPYKPSGATWATLLNACHIHG 565



 Score = 53.1 bits (126), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 6/160 (3%)

Query: 353 GRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQ 412
           G QVHA  + S  +    +   L+T Y        A+ I     +   + WN +I  Y++
Sbjct: 62  GVQVHAHCISSGVEYHSVLVPKLVTFYSAFNLHNEAQSIIENSDILHPLPWNVLIASYAK 121

Query: 413 HGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIE 472
           + L EE +  ++ M   G+ PD  ++  VL AC  +  V  GR +  S++          
Sbjct: 122 NELFEEVIAAYKRMVSKGIRPDAFTYPSVLKACGETLDVAFGRVVHGSIEVSSYKS---S 178

Query: 473 HYAC--MVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLL 510
            Y C  ++ +  R   +  A  + ++M  E DA+ W +++
Sbjct: 179 LYVCNALISMYKRFRNMGIARRLFDRM-FERDAVSWNAVI 217


>AT5G42450.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:16977297-16978850 FORWARD
           LENGTH=517
          Length = 517

 Score =  234 bits (596), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 139/454 (30%), Positives = 242/454 (53%), Gaps = 27/454 (5%)

Query: 160 VEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEM----PKRNVVTWTTMVSG 215
           + +A K+FD +P  DV++ T +IG + +E R  EA   F  +     + N  T+ T++  
Sbjct: 43  IRNAHKVFDEIPELDVISATAVIGRFVKESRHVEASQAFKRLLCLGIRPNEFTFGTVIGS 102

Query: 216 YARNRRVDVARKL----FEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVAC 271
              +R V + ++L     ++    N    +A+L  Y     + +A   FD      VV+ 
Sbjct: 103 STTSRDVKLGKQLHCYALKMGLASNVFVGSAVLNCYVKLSTLTDARRCFDDTRDPNVVSI 162

Query: 272 NEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAA 331
             +I G+    + + A ++F  M ER   TW+A+I  + + G   EA+  F  M REG  
Sbjct: 163 TNLISGYLKKHEFEEALSLFRAMPERSVVTWNAVIGGFSQTGRNEEAVNTFVDMLREGVV 222

Query: 332 L----NFPXXXXXXXXXXXXXXXDHGRQVHA---RLVRSEFDQDLYVASALITMYVKCGD 384
           +     FP                 G+ +HA   + +   F+  ++V ++LI+ Y KCG+
Sbjct: 223 IPNESTFPCAITAISNIASHGA---GKSIHACAIKFLGKRFN--VFVWNSLISFYSKCGN 277

Query: 385 LVRAKWIFNRYP--LKDVVMWNSMITGYSQHGLGEEALNVFRDMCL-SGVPPDDISFIGV 441
           +  +   FN+     +++V WNSMI GY+ +G GEEA+ +F  M   + + P++++ +GV
Sbjct: 278 MEDSLLAFNKLEEEQRNIVSWNSMIWGYAHNGRGEEAVAMFEKMVKDTNLRPNNVTILGV 337

Query: 442 LSACSYSGKVKEGREIFESMKCKYQVEPGI---EHYACMVDLLGRAGQVNDAVEIVEKMP 498
           L AC+++G ++EG   F      Y  +P +   EHYACMVD+L R+G+  +A E+++ MP
Sbjct: 338 LFACNHAGLIQEGYMYFNKAVNDYD-DPNLLELEHYACMVDMLSRSGRFKEAEELIKSMP 396

Query: 499 MEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEV 558
           ++P    W +LLG C+ H    LA++A  K+ +L+P++   YV+LS+ Y++   W++V +
Sbjct: 397 LDPGIGFWKALLGGCQIHSNKRLAKLAASKILELDPRDVSSYVMLSNAYSAMENWQNVSL 456

Query: 559 VREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNN 592
           +R K+K   + +  G SWIEV  +  +FV  D N
Sbjct: 457 IRRKMKETGLKRFTGCSWIEVRDQIRVFVNADKN 490



 Score = 86.7 bits (213), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 111/224 (49%), Gaps = 17/224 (7%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVV 114
           +A++  Y +      A   F+ T + N+VS   ++SG++K     EA  +F AMP R+VV
Sbjct: 132 SAVLNCYVKLSTLTDARRCFDDTRDPNVVSITNLISGYLKKHEFEEALSLFRAMPERSVV 191

Query: 115 SWTSMVRGYVQEGNVEEAERLFWRMPEKNVV--SWTVMLGGLLKDSRVED--ARKLFDMM 170
           +W +++ G+ Q G  EEA   F  M  + VV  + +     +   S +    A K     
Sbjct: 192 TWNAVIGGFSQTGRNEEAVNTFVDMLREGVVIPNESTFPCAITAISNIASHGAGKSIHAC 251

Query: 171 PVK------DVVAVTNMIGGYCEEGRLEEARALFDEM--PKRNVVTWTTMVSGYARNRRV 222
            +K      +V    ++I  Y + G +E++   F+++   +RN+V+W +M+ GYA N R 
Sbjct: 252 AIKFLGKRFNVFVWNSLISFYSKCGNMEDSLLAFNKLEEEQRNIVSWNSMIWGYAHNGRG 311

Query: 223 DVARKLFEVMPER-----NEVSWTAMLMGYTHSGRMREASEFFD 261
           + A  +FE M +      N V+   +L    H+G ++E   +F+
Sbjct: 312 EEAVAMFEKMVKDTNLRPNNVTILGVLFACNHAGLIQEGYMYFN 355



 Score = 86.7 bits (213), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 134/281 (47%), Gaps = 22/281 (7%)

Query: 69  QAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFD---AMPVR-NVVSWTSMVRGYV 124
            A  +F+  PE +++S   ++  FVK     EA + F     + +R N  ++ +++    
Sbjct: 45  NAHKVFDEIPELDVISATAVIGRFVKESRHVEASQAFKRLLCLGIRPNEFTFGTVIGSST 104

Query: 125 QEGNVEEAERLFWRMPE----KNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTN 180
              +V+  ++L     +     NV   + +L   +K S + DAR+ FD     +VV++TN
Sbjct: 105 TSRDVKLGKQLHCYALKMGLASNVFVGSAVLNCYVKLSTLTDARRCFDDTRDPNVVSITN 164

Query: 181 MIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPER----- 235
           +I GY ++   EEA +LF  MP+R+VVTW  ++ G+++  R + A   F  M        
Sbjct: 165 LISGYLKKHEFEEALSLFRAMPERSVVTWNAVIGGFSQTGRNEEAVNTFVDMLREGVVIP 224

Query: 236 NEVSWTAMLMGYTHSGRMREASEFFDAMPVK------PVVACNEMIMGFGFDGDVDRAKA 289
           NE ++   +   ++      A +   A  +K       V   N +I  +   G+++ +  
Sbjct: 225 NESTFPCAITAISNIAS-HGAGKSIHACAIKFLGKRFNVFVWNSLISFYSKCGNMEDSLL 283

Query: 290 VFEKMRE--RDDGTWSAMIKVYERKGFELEALGLFARMQRE 328
            F K+ E  R+  +W++MI  Y   G   EA+ +F +M ++
Sbjct: 284 AFNKLEEEQRNIVSWNSMIWGYAHNGRGEEAVAMFEKMVKD 324



 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 129/291 (44%), Gaps = 65/291 (22%)

Query: 22  TGAISRYARIGQIENARKVFDET--PHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPE 79
           +  ++ Y ++  + +AR+ FD+T  P++   T+    +++ Y + H+  +A++LF   PE
Sbjct: 132 SAVLNCYVKLSTLTDARRCFDDTRDPNVVSITN----LISGYLKKHEFEEALSLFRAMPE 187

Query: 80  KNIVSWNGMVSGFVKNGMVAEARRVFDAM------------------PVRNVVS------ 115
           +++V+WN ++ GF + G   EA   F  M                   + N+ S      
Sbjct: 188 RSVVTWNAVIGGFSQTGRNEEAVNTFVDMLREGVVIPNESTFPCAITAISNIASHGAGKS 247

Query: 116 -----------------WTSMVRGYVQEGNVEEAERLFWRMPE--KNVVSWTVMLGGLLK 156
                            W S++  Y + GN+E++   F ++ E  +N+VSW  M+ G   
Sbjct: 248 IHACAIKFLGKRFNVFVWNSLISFYSKCGNMEDSLLAFNKLEEEQRNIVSWNSMIWGYAH 307

Query: 157 DSRVEDARKLFDMMPVKDVVAVTNMI-----------GGYCEEGRLEEARAL--FDEMPK 203
           + R E+A  +F+ M VKD     N +            G  +EG +   +A+  +D+   
Sbjct: 308 NGRGEEAVAMFEKM-VKDTNLRPNNVTILGVLFACNHAGLIQEGYMYFNKAVNDYDDPNL 366

Query: 204 RNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVS-WTAMLMG-YTHSGR 252
             +  +  MV   +R+ R   A +L + MP    +  W A+L G   HS +
Sbjct: 367 LELEHYACMVDMLSRSGRFKEAEELIKSMPLDPGIGFWKALLGGCQIHSNK 417


>AT1G43980.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:16687637-16689502 REVERSE
           LENGTH=621
          Length = 621

 Score =  233 bits (594), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 153/555 (27%), Positives = 258/555 (46%), Gaps = 54/555 (9%)

Query: 92  FVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVML 151
           + K+G V  A ++FD +P +N ++W   ++G  + G +  A  LF  MPE++VVSW  M+
Sbjct: 49  YFKSGSVINALQLFDDIPDKNTITWNVCLKGLFKNGYLNNALDLFDEMPERDVVSWNTMI 108

Query: 152 GGLLKDSRVE-DARKLFDMM-----PVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRN 205
            GL+     E   R  FDM      P +   ++   +      G      A+   + + N
Sbjct: 109 SGLVSCGFHEYGIRVFFDMQRWEIRPTEFTFSILASLVTCVRHGEQIHGNAICSGVSRYN 168

Query: 206 VVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGR----------MRE 255
           +V W +++  Y R    D A  +F  M +R+ VSW  +++  + SG           MRE
Sbjct: 169 LVVWNSVMDMYRRLGVFDYALSVFLTMEDRDVVSWNCLILSCSDSGNKEVALDQFWLMRE 228

Query: 256 ASEFFDAMPVKPVVA------------------------CNEMIMGFGFD-----GDVDR 286
                D   V  VV+                         N +++G G D       +D 
Sbjct: 229 MEIQPDEYTVSMVVSICSDLRELSKGKQALALCIKMGFLSNSIVLGAGIDMFSKCNRLDD 288

Query: 287 AKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXX 346
           +  +F ++ + D    ++MI  Y       +AL LF     +    +             
Sbjct: 289 SVKLFRELEKWDSVLCNSMIGSYSWHCCGEDALRLFILAMTQSVRPD-KFTFSSVLSSMN 347

Query: 347 XXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSM 406
               DHG  VH+ +++  FD D  VA++L+ MY K G +  A  +F +   KD++ WN++
Sbjct: 348 AVMLDHGADVHSLVIKLGFDLDTAVATSLMEMYFKTGSVDLAMGVFAKTDGKDLIFWNTV 407

Query: 407 ITGYSQHGLGEEALNVFRDMCLS-GVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKY 465
           I G +++    E+L +F  + ++  + PD ++ +G+L AC Y+G V EG +IF SM+  +
Sbjct: 408 IMGLARNSRAVESLAIFNQLLMNQSLKPDRVTLMGILVACCYAGFVNEGIQIFSSMEKAH 467

Query: 466 QVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVA 525
            V PG EHYAC+++LL R G +N+A +I +K+P EP + +W  +L A        LAE  
Sbjct: 468 GVNPGNEHYACIIELLCRVGMINEAKDIADKIPFEPSSHIWEPILCASLDLGDTRLAETV 527

Query: 526 VEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHM 585
            + + + EPK++ PY++L  +Y    RWE+   +R  +    +    G S I +E     
Sbjct: 528 AKTMLESEPKSSFPYLVLIKIYEMTWRWENSVKLRYAMNEHKLKSAQGSSKISIESSVFS 587

Query: 586 FV-------GGDNNC 593
           F        GG + C
Sbjct: 588 FEADQLQIHGGHDTC 602


>AT4G16470.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:9287862-9289541 REVERSE
           LENGTH=501
          Length = 501

 Score =  229 bits (584), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 123/347 (35%), Positives = 186/347 (53%), Gaps = 1/347 (0%)

Query: 273 EMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAAL 332
           ++++ +   GD+  A  +F  ++ RD   W+AMI  Y +KG E E L ++  M++     
Sbjct: 148 KLLILYALSGDLQTAGILFRSLKIRDLIPWNAMISGYVQKGLEQEGLFIYYDMRQNRIVP 207

Query: 333 NFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIF 392
           +                 +HG++ HA +++     ++ V SAL+ MY KC        +F
Sbjct: 208 DQYTFASVFRACSALDRLEHGKRAHAVMIKRCIKSNIIVDSALVDMYFKCSSFSDGHRVF 267

Query: 393 NRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVK 452
           ++   ++V+ W S+I+GY  HG   E L  F  M   G  P+ ++F+ VL+AC++ G V 
Sbjct: 268 DQLSTRNVITWTSLISGYGYHGKVSEVLKCFEKMKEEGCRPNPVTFLVVLTACNHGGLVD 327

Query: 453 EGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGA 512
           +G E F SMK  Y +EP  +HYA MVD LGRAG++ +A E V K P +    VWGSLLGA
Sbjct: 328 KGWEHFYSMKRDYGIEPEGQHYAAMVDTLGRAGRLQEAYEFVMKSPCKEHPPVWGSLLGA 387

Query: 513 CRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLP 572
           CR H  + L E+A  K  +L+P N G YV+ ++ YAS G  E    VR K++   V K P
Sbjct: 388 CRIHGNVKLLELAATKFLELDPTNGGNYVVFANGYASCGLREAASKVRRKMENAGVKKDP 447

Query: 573 GYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAGYSPD 619
           GYS IE++ + H F+  D+  H     I K +  +     D  Y PD
Sbjct: 448 GYSQIELQGEVHRFM-KDDTSHRLSEKIYKKVHEMTSFFMDIDYYPD 493



 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 90/179 (50%), Gaps = 2/179 (1%)

Query: 353 GRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQ 412
           G+++HA++    F  + Y+   L+ +Y   GDL  A  +F    ++D++ WN+MI+GY Q
Sbjct: 127 GKRIHAQMFVVGFALNEYLKVKLLILYALSGDLQTAGILFRSLKIRDLIPWNAMISGYVQ 186

Query: 413 HGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIE 472
            GL +E L ++ DM  + + PD  +F  V  ACS   +++ G+     M  K  ++  I 
Sbjct: 187 KGLEQEGLFIYYDMRQNRIVPDQYTFASVFRACSALDRLEHGKRAHAVM-IKRCIKSNII 245

Query: 473 HYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQ 531
             + +VD+  +    +D   + +++    + I W SL+     H K+       EK+ +
Sbjct: 246 VDSALVDMYFKCSSFSDGHRVFDQLSTR-NVITWTSLISGYGYHGKVSEVLKCFEKMKE 303



 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 92/184 (50%), Gaps = 12/184 (6%)

Query: 92  FVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVML 151
           +  +G +  A  +F ++ +R+++ W +M+ GYVQ+G  +E   +++ M +  +V      
Sbjct: 153 YALSGDLQTAGILFRSLKIRDLIPWNAMISGYVQKGLEQEGLFIYYDMRQNRIVPDQYTF 212

Query: 152 GGLLKD----SRVEDARKLFDMMPVK----DVVAVTNMIGGYCEEGRLEEARALFDEMPK 203
             + +      R+E  ++   +M  +    +++  + ++  Y +     +   +FD++  
Sbjct: 213 ASVFRACSALDRLEHGKRAHAVMIKRCIKSNIIVDSALVDMYFKCSSFSDGHRVFDQLST 272

Query: 204 RNVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEF 259
           RNV+TWT+++SGY  + +V    K FE M E     N V++  +L    H G + +  E 
Sbjct: 273 RNVITWTSLISGYGYHGKVSEVLKCFEKMKEEGCRPNPVTFLVVLTACNHGGLVDKGWEH 332

Query: 260 FDAM 263
           F +M
Sbjct: 333 FYSM 336



 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 98/214 (45%), Gaps = 17/214 (7%)

Query: 70  AVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVV----SWTSMVRGYVQ 125
           A  LF +   ++++ WN M+SG+V+ G+  E   ++  M    +V    ++ S+ R    
Sbjct: 162 AGILFRSLKIRDLIPWNAMISGYVQKGLEQEGLFIYYDMRQNRIVPDQYTFASVFRACSA 221

Query: 126 EGNVEEAER----LFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNM 181
              +E  +R    +  R  + N++  + ++    K S   D  ++FD +  ++V+  T++
Sbjct: 222 LDRLEHGKRAHAVMIKRCIKSNIIVDSALVDMYFKCSSFSDGHRVFDQLSTRNVITWTSL 281

Query: 182 IGGYCEEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMP---- 233
           I GY   G++ E    F++M +     N VT+  +++       VD   + F  M     
Sbjct: 282 ISGYGYHGKVSEVLKCFEKMKEEGCRPNPVTFLVVLTACNHGGLVDKGWEHFYSMKRDYG 341

Query: 234 -ERNEVSWTAMLMGYTHSGRMREASEFFDAMPVK 266
            E     + AM+     +GR++EA EF    P K
Sbjct: 342 IEPEGQHYAAMVDTLGRAGRLQEAYEFVMKSPCK 375



 Score = 59.3 bits (142), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 101/230 (43%), Gaps = 22/230 (9%)

Query: 45  PHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRV 104
           P  +   S + A  A     H       + +   + NI+  + +V  + K    ++  RV
Sbjct: 207 PDQYTFASVFRACSALDRLEHGKRAHAVMIKRCIKSNIIVDSALVDMYFKCSSFSDGHRV 266

Query: 105 FDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEK----NVVSWTVML-----GGLL 155
           FD +  RNV++WTS++ GY   G V E  + F +M E+    N V++ V+L     GGL+
Sbjct: 267 FDQLSTRNVITWTSLISGYGYHGKVSEVLKCFEKMKEEGCRPNPVTFLVVLTACNHGGLV 326

Query: 156 KDS--RVEDARKLFDMMPV-KDVVAVTNMIGGYCEEGRLEEARALFDEMP-KRNVVTWTT 211
                     ++ + + P  +   A+ + +G     GRL+EA     + P K +   W +
Sbjct: 327 DKGWEHFYSMKRDYGIEPEGQHYAAMVDTLG---RAGRLQEAYEFVMKSPCKEHPPVWGS 383

Query: 212 MVSGYARNRRVDV----ARKLFEVMPERNEVSWTAMLMGYTHSGRMREAS 257
           ++     +  V +    A K  E+ P  N  ++     GY   G +REA+
Sbjct: 384 LLGACRIHGNVKLLELAATKFLELDPT-NGGNYVVFANGYASCG-LREAA 431


>AT5G43790.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:17592099-17593481 REVERSE
           LENGTH=460
          Length = 460

 Score =  229 bits (583), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 132/408 (32%), Positives = 218/408 (53%), Gaps = 23/408 (5%)

Query: 191 LEEARALFDEMPKRNVVTWTTMVSGYARNR---RVDVARKLF-EVMPER------NEVSW 240
           L  A ++  ++P  +V  + T++S    N    +  +A  L+ +++  R      NE ++
Sbjct: 56  LSYALSILRQIPNPSVFLYNTLISSIVSNHNSTQTHLAFSLYDQILSSRSNFVRPNEFTY 115

Query: 241 TAMLMG------YTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFD-GDVDRAKAVFEK 293
            ++         +   GR   A       PV         ++GF  + G +  A+++FE+
Sbjct: 116 PSLFKASGFDAQWHRHGRALHAHVLKFLEPVNHDRFVQAALVGFYANCGKLREARSLFER 175

Query: 294 MRERDDGTWSAMIKVY---ERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXX 350
           +RE D  TW+ ++  Y   E    + E L LF RMQ     L+                 
Sbjct: 176 IREPDLATWNTLLAAYANSEEIDSDEEVLLLFMRMQVRPNELSLVALIKSCANLGEFV-- 233

Query: 351 DHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGY 410
             G   H  ++++    + +V ++LI +Y KCG L  A+ +F+    +DV  +N+MI G 
Sbjct: 234 -RGVWAHVYVLKNNLTLNQFVGTSLIDLYSKCGCLSFARKVFDEMSQRDVSCYNAMIRGL 292

Query: 411 SQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPG 470
           + HG G+E + +++ +   G+ PD  +F+  +SACS+SG V EG +IF SMK  Y +EP 
Sbjct: 293 AVHGFGQEGIELYKSLISQGLVPDSATFVVTISACSHSGLVDEGLQIFNSMKAVYGIEPK 352

Query: 471 IEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLA 530
           +EHY C+VDLLGR+G++ +A E ++KMP++P+A +W S LG+ +TH   +  E+A++ L 
Sbjct: 353 VEHYGCLVDLLGRSGRLEEAEECIKKMPVKPNATLWRSFLGSSQTHGDFERGEIALKHLL 412

Query: 531 QLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIE 578
            LE +N+G YVLLS++YA   RW DVE  RE +K   V K PG S + 
Sbjct: 413 GLEFENSGNYVLLSNIYAGVNRWTDVEKTRELMKDHRVNKSPGISTLN 460



 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 116/272 (42%), Gaps = 15/272 (5%)

Query: 156 KDSRVEDARKLFDMMPVK-DVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVS 214
           +  R   A  L  + PV  D      ++G Y   G+L EAR+LF+ + + ++ TW T+++
Sbjct: 130 RHGRALHAHVLKFLEPVNHDRFVQAALVGFYANCGKLREARSLFERIREPDLATWNTLLA 189

Query: 215 GYARNRRVDVARK---LFEVMPER-NEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVA 270
            YA +  +D   +   LF  M  R NE+S  A++    + G       +     +K  + 
Sbjct: 190 AYANSEEIDSDEEVLLLFMRMQVRPNELSLVALIKSCANLGEFVRGV-WAHVYVLKNNLT 248

Query: 271 CNEMIMGFGFD-----GDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARM 325
            N+ +     D     G +  A+ VF++M +RD   ++AMI+     GF  E + L+  +
Sbjct: 249 LNQFVGTSLIDLYSKCGCLSFARKVFDEMSQRDVSCYNAMIRGLAVHGFGQEGIELYKSL 308

Query: 326 QREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVA--SALITMYVKCG 383
             +G   +                 D G Q+   + ++ +  +  V     L+ +  + G
Sbjct: 309 ISQGLVPDSATFVVTISACSHSGLVDEGLQIFNSM-KAVYGIEPKVEHYGCLVDLLGRSG 367

Query: 384 DLVRAKWIFNRYPLK-DVVMWNSMITGYSQHG 414
            L  A+    + P+K +  +W S +     HG
Sbjct: 368 RLEEAEECIKKMPVKPNATLWRSFLGSSQTHG 399



 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 116/280 (41%), Gaps = 31/280 (11%)

Query: 56  AMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMV---AEARRVFDAMPVR- 111
           A+V  Y    +  +A +LFE   E ++ +WN +++ +  +  +    E   +F  M VR 
Sbjct: 155 ALVGFYANCGKLREARSLFERIREPDLATWNTLLAAYANSEEIDSDEEVLLLFMRMQVRP 214

Query: 112 NVVSWTSMVRGYVQEGNVEEAERLFWRMPE--KNVVSWTVMLGGLLKD-----SRVEDAR 164
           N +S  ++++      N+ E  R  W      KN ++    +G  L D       +  AR
Sbjct: 215 NELSLVALIKSC---ANLGEFVRGVWAHVYVLKNNLTLNQFVGTSLIDLYSKCGCLSFAR 271

Query: 165 KLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVV----TWTTMVSGYARNR 220
           K+FD M  +DV     MI G    G  +E   L+  +  + +V    T+   +S  + + 
Sbjct: 272 KVFDEMSQRDVSCYNAMIRGLAVHGFGQEGIELYKSLISQGLVPDSATFVVTISACSHSG 331

Query: 221 RVDVARKLFEVM-------PERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNE 273
            VD   ++F  M       P+         L+G   SGR+ EA E    MPVKP      
Sbjct: 332 LVDEGLQIFNSMKAVYGIEPKVEHYGCLVDLLG--RSGRLEEAEECIKKMPVKPNATLWR 389

Query: 274 MIMGFG-FDGDVDRAKAVFEK---MRERDDGTWSAMIKVY 309
             +G     GD +R +   +    +   + G +  +  +Y
Sbjct: 390 SFLGSSQTHGDFERGEIALKHLLGLEFENSGNYVLLSNIY 429


>AT1G03510.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:876258-877547 REVERSE
           LENGTH=429
          Length = 429

 Score =  226 bits (577), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 146/473 (30%), Positives = 235/473 (49%), Gaps = 57/473 (12%)

Query: 107 AMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKL 166
           A     ++S T  +  Y  +GN E+A  LF +M      S+ + L     D+ V      
Sbjct: 6   ASSCTKLISLTKQLSSYANQGNHEQALNLFLQMHS----SFALPL-----DAHV------ 50

Query: 167 FDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVAR 226
           F +       A   ++GG          ++ F   P         ++  Y +   V  AR
Sbjct: 51  FSLALKSCAAAFRPVLGGSVHA---HSVKSNFLSNP----FVGCALLDMYGKCLSVSHAR 103

Query: 227 KLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDR 286
           KLF+ +P+RN V W AM+  YTH G+++EA E ++AM V P    NE             
Sbjct: 104 KLFDEIPQRNAVVWNAMISHYTHCGKVKEAVELYEAMDVMP----NE-----------SS 148

Query: 287 AKAVFEKMRERDDGTWSAMIKVYERK---GFELEALGLFARMQREGAALNFPXXXXXXXX 343
             A+ + +   +DG++ A I+ Y +     F+   + L A +    A   F         
Sbjct: 149 FNAIIKGLVGTEDGSYRA-IEFYRKMIEFRFKPNLITLLALVSACSAIGAFRLI------ 201

Query: 344 XXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMW 403
                     +++H+   R+  +    + S L+  Y +CG +V  + +F+    +DVV W
Sbjct: 202 ----------KEIHSYAFRNLIEPHPQLKSGLVEAYGRCGSIVYVQLVFDSMEDRDVVAW 251

Query: 404 NSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKC 463
           +S+I+ Y+ HG  E AL  F++M L+ V PDDI+F+ VL ACS++G   E    F+ M+ 
Sbjct: 252 SSLISAYALHGDAESALKTFQEMELAKVTPDDIAFLNVLKACSHAGLADEALVYFKRMQG 311

Query: 464 KYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAE 523
            Y +    +HY+C+VD+L R G+  +A ++++ MP +P A  WG+LLGACR + +++LAE
Sbjct: 312 DYGLRASKDHYSCLVDVLSRVGRFEEAYKVIQAMPEKPTAKTWGALLGACRNYGEIELAE 371

Query: 524 VAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSW 576
           +A  +L  +EP+N   YVLL  +Y S GR E+ E +R K+K   V   PG SW
Sbjct: 372 IAARELLMVEPENPANYVLLGKIYMSVGRQEEAERLRLKMKESGVKVSPGSSW 424



 Score = 76.3 bits (186), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 138/320 (43%), Gaps = 40/320 (12%)

Query: 38  RKVFDETPHIHRTTSSW-------NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVS 90
           R V   + H H   S++        A++  Y +      A  LF+  P++N V WN M+S
Sbjct: 63  RPVLGGSVHAHSVKSNFLSNPFVGCALLDMYGKCLSVSHARKLFDEIPQRNAVVWNAMIS 122

Query: 91  GFVKNGMVAEARRVFDAMPVR-NVVSWTSMVRGYV-QEGNVEEAERLFWRMPE----KNV 144
            +   G V EA  +++AM V  N  S+ ++++G V  E     A   + +M E     N+
Sbjct: 123 HYTHCGKVKEAVELYEAMDVMPNESSFNAIIKGLVGTEDGSYRAIEFYRKMIEFRFKPNL 182

Query: 145 VSWTVMLGG--------LLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARA 196
           ++   ++          L+K+      R L +  P       + ++  Y   G +   + 
Sbjct: 183 ITLLALVSACSAIGAFRLIKEIHSYAFRNLIEPHPQLK----SGLVEAYGRCGSIVYVQL 238

Query: 197 LFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMP----ERNEVSWTAMLMGYTHSGR 252
           +FD M  R+VV W++++S YA +   + A K F+ M       +++++  +L   +H+G 
Sbjct: 239 VFDSMEDRDVVAWSSLISAYALHGDAESALKTFQEMELAKVTPDDIAFLNVLKACSHAGL 298

Query: 253 MREASEFFDAM-------PVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDG-TWSA 304
             EA  +F  M         K   +C  ++      G  + A  V + M E+    TW A
Sbjct: 299 ADEALVYFKRMQGDYGLRASKDHYSC--LVDVLSRVGRFEEAYKVIQAMPEKPTAKTWGA 356

Query: 305 MIKVYERKGFELEALGLFAR 324
           ++      G E+E   + AR
Sbjct: 357 LLGACRNYG-EIELAEIAAR 375



 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 80/187 (42%), Gaps = 19/187 (10%)

Query: 86  NGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVV 145
           +G+V  + + G +   + VFD+M  R+VV+W+S++  Y   G+ E A + F  M    V 
Sbjct: 221 SGLVEAYGRCGSIVYVQLVFDSMEDRDVVAWSSLISAYALHGDAESALKTFQEMELAKVT 280

Query: 146 SWTVMLGGLLKDSR----VEDARKLFDMM-------PVKDVVAVTNMIGGYCEEGRLEEA 194
              +    +LK        ++A   F  M         KD    + ++      GR EEA
Sbjct: 281 PDDIAFLNVLKACSHAGLADEALVYFKRMQGDYGLRASKD--HYSCLVDVLSRVGRFEEA 338

Query: 195 RALFDEMPKRNVV-TWTTMVSGYARNRRVDV----ARKLFEVMPERNEVSWTAMLMGYTH 249
             +   MP++    TW  ++        +++    AR+L  V PE N  ++  +   Y  
Sbjct: 339 YKVIQAMPEKPTAKTWGALLGACRNYGEIELAEIAARELLMVEPE-NPANYVLLGKIYMS 397

Query: 250 SGRMREA 256
            GR  EA
Sbjct: 398 VGRQEEA 404


>AT2G15690.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:6831855-6833594 REVERSE
           LENGTH=579
          Length = 579

 Score =  226 bits (576), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 117/357 (32%), Positives = 201/357 (56%), Gaps = 30/357 (8%)

Query: 351 DHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGY 410
           +H ++VH   ++S+F  D  + + +I+M+ +C  +  AK +F+    KD+  W+ M+  Y
Sbjct: 253 EHSKKVHDHFLQSKFRGDPKLNNMVISMFGECSSITDAKRVFDHMVDKDMDSWHLMMCAY 312

Query: 411 SQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPG 470
           S +G+G++AL++F +M   G+ P++ +F+ V  AC+  G ++E    F+SMK ++ + P 
Sbjct: 313 SDNGMGDDALHLFEEMTKHGLKPNEETFLTVFLACATVGGIEEAFLHFDSMKNEHGISPK 372

Query: 471 IEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLA 530
            EHY  ++ +LG+ G + +A + +  +P EP A  W ++    R H  +DL +   E + 
Sbjct: 373 TEHYLGVLGVLGKCGHLVEAEQYIRDLPFEPTADFWEAMRNYARLHGDIDLEDYMEELMV 432

Query: 531 QLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGD 590
            ++P  A   V+          +++  +V  K +   +++    ++ + E K        
Sbjct: 433 DVDPSKA---VINKIPTPPPKSFKETNMVTSKSR---ILEFRNLTFYKDEAKE------- 479

Query: 591 NNCHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDVEEEEKTHSLGYHSEKLAIAYGLL 650
                        +    G++    Y PD  FVLHD+++E K  +L YHSE+LAIAYG++
Sbjct: 480 -------------MAAKKGVV----YVPDTRFVLHDIDQEAKEQALLYHSERLAIAYGII 522

Query: 651 KVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIVRDANRFHHFKDGYCSCKDYW 707
             P    + ++KNLRVCGDCH+ IK+++K+ GR +IVRD  RFHHFKDG CSC DYW
Sbjct: 523 CTPPRKTLTIIKNLRVCGDCHNFIKIMSKIIGRVLIVRDNKRFHHFKDGKCSCGDYW 579


>AT2G17210.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:7485398-7487602 REVERSE
           LENGTH=715
          Length = 715

 Score =  225 bits (574), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 157/573 (27%), Positives = 278/573 (48%), Gaps = 94/573 (16%)

Query: 100 EARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM-----PEKNVVSWTVMLGG- 153
            AR++FD M  R+V+SW+ ++R YVQ        +LF  M      E + V+ T +L   
Sbjct: 177 SARKLFDEMSERDVISWSVVIRSYVQSKEPVVGLKLFKEMVHEAKTEPDCVTVTSVLKAC 236

Query: 154 -LLKDSRVEDA------RKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNV 206
            +++D  V  +      R+ FD+    DV    ++I  Y +   ++ A  +FDE   RN+
Sbjct: 237 TVMEDIDVGRSVHGFSIRRGFDL---ADVFVCNSLIDMYSKGFDVDSAFRVFDETTCRNI 293

Query: 207 VTWTTMVSGYARNRRVDVARKLFEVMP--------------------------------- 233
           V+W ++++G+  N+R D A ++F +M                                  
Sbjct: 294 VSWNSILAGFVHNQRYDEALEMFHLMVQEAVEVDEVTVVSLLRVCKFFEQPLPCKSIHGV 353

Query: 234 ------ERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRA 287
                 E NEV+ ++++  YT    + +A    D+M  K VV+C+ MI G    G  D A
Sbjct: 354 IIRRGYESNEVALSSLIDAYTSCSLVDDAGTVLDSMTYKDVVSCSTMISGLAHAGRSDEA 413

Query: 288 KAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXX 347
            ++F  MR+  +     +I +       L A  + A ++    A                
Sbjct: 414 ISIFCHMRDTPNAI--TVISL-------LNACSVSADLRTSKWA---------------- 448

Query: 348 XXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMI 407
               HG  +     RS    D+ V ++++  Y KCG +  A+  F++   K+++ W  +I
Sbjct: 449 ----HGIAIR----RSLAINDISVGTSIVDAYAKCGAIEMARRTFDQITEKNIISWTVII 500

Query: 408 TGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQV 467
           + Y+ +GL ++AL +F +M   G  P+ ++++  LSAC++ G VK+G  IF+SM  +   
Sbjct: 501 SAYAINGLPDKALALFDEMKQKGYTPNAVTYLAALSACNHGGLVKKGLMIFKSM-VEEDH 559

Query: 468 EPGIEHYACMVDLLGRAGQVNDAVEIVEKMP--MEPDAIVWGSLLGACRTHM-KLDLAEV 524
           +P ++HY+C+VD+L RAG+++ AVE+++ +P  ++  A  WG++L  CR    KL +   
Sbjct: 560 KPSLQHYSCIVDMLSRAGEIDTAVELIKNLPEDVKAGASAWGAILSGCRNRFKKLIITSE 619

Query: 525 AVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAH 584
            V ++ +LEP  +  Y+L S  +A++  WEDV ++R  +K R V  + GYS +     A 
Sbjct: 620 VVAEVLELEPLCSSGYLLASSTFAAEKSWEDVAMMRRLVKERKVRVVAGYSMVREGNLAK 679

Query: 585 MFVGGDNNCHPEQPI--IMKMLERLDGLLRDAG 615
            F+ GD     +  +  +++ L R   L   AG
Sbjct: 680 RFLAGDKLSQSDSELNDVVQSLHRCMKLDDTAG 712



 Score =  106 bits (265), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 98/440 (22%), Positives = 187/440 (42%), Gaps = 76/440 (17%)

Query: 36  NARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFE-------TTPE--------- 79
           +ARK+FDE     R   SW+ ++ +Y Q+ +P   + LF+       T P+         
Sbjct: 177 SARKLFDEMSE--RDVISWSVVIRSYVQSKEPVVGLKLFKEMVHEAKTEPDCVTVTSVLK 234

Query: 80  -------------------------KNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVV 114
                                     ++   N ++  + K   V  A RVFD    RN+V
Sbjct: 235 ACTVMEDIDVGRSVHGFSIRRGFDLADVFVCNSLIDMYSKGFDVDSAFRVFDETTCRNIV 294

Query: 115 SWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDM-MPVK 173
           SW S++ G+V     +EA  +F  M ++ V    V +  LL+        K F+  +P K
Sbjct: 295 SWNSILAGFVHNQRYDEALEMFHLMVQEAVEVDEVTVVSLLR------VCKFFEQPLPCK 348

Query: 174 DV-------------VAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNR 220
            +             VA++++I  Y     +++A  + D M  ++VV+ +TM+SG A   
Sbjct: 349 SIHGVIIRRGYESNEVALSSLIDAYTSCSLVDDAGTVLDSMTYKDVVSCSTMISGLAHAG 408

Query: 221 RVDVARKLFEVMPER-NEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMG-- 277
           R D A  +F  M +  N ++  ++L   + S  +R  S++   + ++  +A N++ +G  
Sbjct: 409 RSDEAISIFCHMRDTPNAITVISLLNACSVSADLR-TSKWAHGIAIRRSLAINDISVGTS 467

Query: 278 ----FGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALN 333
               +   G ++ A+  F+++ E++  +W+ +I  Y   G   +AL LF  M+++G   N
Sbjct: 468 IVDAYAKCGAIEMARRTFDQITEKNIISWTVIISAYAINGLPDKALALFDEMKQKGYTPN 527

Query: 334 FPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFN 393
                              G  +   +V  +    L   S ++ M  + G++  A  +  
Sbjct: 528 AVTYLAALSACNHGGLVKKGLMIFKSMVEEDHKPSLQHYSCIVDMLSRAGEIDTAVELIK 587

Query: 394 RYPLKDV----VMWNSMITG 409
             P +DV      W ++++G
Sbjct: 588 NLP-EDVKAGASAWGAILSG 606



 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 139/310 (44%), Gaps = 53/310 (17%)

Query: 3   YGYSTLRVCMVQVRFQCTSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYF 62
           +G+S  R   +   F C S   I  Y++   +++A +VFDET    R   SWN+++A + 
Sbjct: 249 HGFSIRRGFDLADVFVCNSL--IDMYSKGFDVDSAFRVFDETT--CRNIVSWNSILAGFV 304

Query: 63  QAHQPHQAVTLF-----------ETTP----------------------------EKNIV 83
              +  +A+ +F           E T                             E N V
Sbjct: 305 HNQRYDEALEMFHLMVQEAVEVDEVTVVSLLRVCKFFEQPLPCKSIHGVIIRRGYESNEV 364

Query: 84  SWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEK- 142
           + + ++  +    +V +A  V D+M  ++VVS ++M+ G    G  +EA  +F  M +  
Sbjct: 365 ALSSLIDAYTSCSLVDDAGTVLDSMTYKDVVSCSTMISGLAHAGRSDEAISIFCHMRDTP 424

Query: 143 NVVSWTVMLGGL-----LKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARAL 197
           N ++   +L        L+ S+      +   + + D+   T+++  Y + G +E AR  
Sbjct: 425 NAITVISLLNACSVSADLRTSKWAHGIAIRRSLAINDISVGTSIVDAYAKCGAIEMARRT 484

Query: 198 FDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRM 253
           FD++ ++N+++WT ++S YA N   D A  LF+ M ++    N V++ A L    H G +
Sbjct: 485 FDQITEKNIISWTVIISAYAINGLPDKALALFDEMKQKGYTPNAVTYLAALSACNHGGLV 544

Query: 254 REASEFFDAM 263
           ++    F +M
Sbjct: 545 KKGLMIFKSM 554



 Score = 92.4 bits (228), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 163/414 (39%), Gaps = 74/414 (17%)

Query: 229 FEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPV---KP--------VVAC------ 271
           F+ M  R+ VSW  ++ G    G   E   +F  + V   +P        + AC      
Sbjct: 84  FDCMNSRDSVSWNVIVFGLLDYGFEEEGLWWFSKLRVWGFEPNTSTLVLVIHACRSLWFD 143

Query: 272 NEMIMGF----GF---------------DGDVDRAKAVFEKMRERDDGTWSAMIKVYERK 312
            E I G+    GF               D D   A+ +F++M ERD  +WS +I+ Y + 
Sbjct: 144 GEKIHGYVIRSGFCGISSVQNSILCMYADSDSLSARKLFDEMSERDVISWSVVIRSYVQS 203

Query: 313 GFELEALGLFARMQREGAA-LNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFD-QDLY 370
              +  L LF  M  E     +                 D GR VH   +R  FD  D++
Sbjct: 204 KEPVVGLKLFKEMVHEAKTEPDCVTVTSVLKACTVMEDIDVGRSVHGFSIRRGFDLADVF 263

Query: 371 VASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSG 430
           V ++LI MY K  D+  A  +F+    +++V WNS++ G+  +   +EAL +F  M    
Sbjct: 264 VCNSLIDMYSKGFDVDSAFRVFDETTCRNIVSWNSILAGFVHNQRYDEALEMFHLMVQEA 323

Query: 431 VPPDDISFIGVLSACSY--------------------SGKVKEGREIFESMKCKYQVEPG 470
           V  D+++ + +L  C +                    S +V     I     C    + G
Sbjct: 324 VEVDEVTVVSLLRVCKFFEQPLPCKSIHGVIIRRGYESNEVALSSLIDAYTSCSLVDDAG 383

Query: 471 ----------IEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLD 520
                     +   + M+  L  AG+ ++A+ I   M   P+AI   SLL AC     L 
Sbjct: 384 TVLDSMTYKDVVSCSTMISGLAHAGRSDEAISIFCHMRDTPNAITVISLLNACSVSADLR 443

Query: 521 LAE----VAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIK 570
            ++    +A+ +   +   + G  ++    YA  G  E      ++I  +++I 
Sbjct: 444 TSKWAHGIAIRRSLAINDISVGTSIV--DAYAKCGAIEMARRTFDQITEKNIIS 495



 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 111/242 (45%), Gaps = 19/242 (7%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLF----ETT 77
           +  I  Y     +++A  V D   +  +   S + M++    A +  +A+++F    +T 
Sbjct: 367 SSLIDAYTSCSLVDDAGTVLDSMTY--KDVVSCSTMISGLAHAGRSDEAISIFCHMRDTP 424

Query: 78  PEKNIVSWNGM--VSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERL 135
               ++S      VS  ++    A    +  ++ + ++   TS+V  Y + G +E A R 
Sbjct: 425 NAITVISLLNACSVSADLRTSKWAHGIAIRRSLAINDISVGTSIVDAYAKCGAIEMARRT 484

Query: 136 FWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVV--AVTNMIG-GYCEEGRLE 192
           F ++ EKN++SWTV++     +   + A  LFD M  K     AVT +     C  G L 
Sbjct: 485 FDQITEKNIISWTVIISAYAINGLPDKALALFDEMKQKGYTPNAVTYLAALSACNHGGLV 544

Query: 193 EA-----RALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEV---SWTAML 244
           +      +++ +E  K ++  ++ +V   +R   +D A +L + +PE  +    +W A+L
Sbjct: 545 KKGLMIFKSMVEEDHKPSLQHYSCIVDMLSRAGEIDTAVELIKNLPEDVKAGASAWGAIL 604

Query: 245 MG 246
            G
Sbjct: 605 SG 606


>AT1G77170.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:28998133-28999536 REVERSE
           LENGTH=467
          Length = 467

 Score =  223 bits (569), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 116/297 (39%), Positives = 180/297 (60%), Gaps = 2/297 (0%)

Query: 282 GDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXX 341
           G+ + A+ VF++  ER  G+W+A+I      G   EA+ +F  M+R G   +        
Sbjct: 166 GEFENARKVFDENPERKLGSWNAIIGGLNHAGRANEAVEMFVDMKRSGLEPDDFTMVSVT 225

Query: 342 XXXXXXXXXDHGRQVHARLV--RSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKD 399
                        Q+H  ++  ++E   D+ + ++LI MY KCG +  A  IF     ++
Sbjct: 226 ASCGGLGDLSLAFQLHKCVLQAKTEEKSDIMMLNSLIDMYGKCGRMDLASHIFEEMRQRN 285

Query: 400 VVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFE 459
           VV W+SMI GY+ +G   EAL  FR M   GV P+ I+F+GVLSAC + G V+EG+  F 
Sbjct: 286 VVSWSSMIVGYAANGNTLEALECFRQMREFGVRPNKITFVGVLSACVHGGLVEEGKTYFA 345

Query: 460 SMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKL 519
            MK ++++EPG+ HY C+VDLL R GQ+ +A ++VE+MPM+P+ +VWG L+G C     +
Sbjct: 346 MMKSEFELEPGLSHYGCIVDLLSRDGQLKEAKKVVEEMPMKPNVMVWGCLMGGCEKFGDV 405

Query: 520 DLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSW 576
           ++AE     + +LEP N G YV+L+++YA +G W+DVE VR+ +KT+ V K+P YS+
Sbjct: 406 EMAEWVAPYMVELEPWNDGVYVVLANVYALRGMWKDVERVRKLMKTKKVAKIPAYSY 462



 Score = 93.2 bits (230), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 115/255 (45%), Gaps = 53/255 (20%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLF------- 74
           +G I+ Y + G+ ENARKVFDE P   R   SWNA++     A + ++AV +F       
Sbjct: 156 SGFITLYCKAGEFENARKVFDENPE--RKLGSWNAIIGGLNHAGRANEAVEMFVDMKRSG 213

Query: 75  ----------------------------------ETTPEKNIVSWNGMVSGFVKNGMVAE 100
                                             +T  + +I+  N ++  + K G +  
Sbjct: 214 LEPDDFTMVSVTASCGGLGDLSLAFQLHKCVLQAKTEEKSDIMMLNSLIDMYGKCGRMDL 273

Query: 101 ARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPE----KNVVSWTVMLGGLLK 156
           A  +F+ M  RNVVSW+SM+ GY   GN  EA   F +M E     N +++  +L   + 
Sbjct: 274 ASHIFEEMRQRNVVSWSSMIVGYAANGNTLEALECFRQMREFGVRPNKITFVGVLSACVH 333

Query: 157 DSRVEDARKLFDMMPVK-----DVVAVTNMIGGYCEEGRLEEARALFDEMP-KRNVVTWT 210
              VE+ +  F MM  +      +     ++     +G+L+EA+ + +EMP K NV+ W 
Sbjct: 334 GGLVEEGKTYFAMMKSEFELEPGLSHYGCIVDLLSRDGQLKEAKKVVEEMPMKPNVMVWG 393

Query: 211 TMVSGYARNRRVDVA 225
            ++ G  +   V++A
Sbjct: 394 CLMGGCEKFGDVEMA 408



 Score = 86.3 bits (212), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 103/210 (49%), Gaps = 2/210 (0%)

Query: 302 WSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLV 361
           W+ +++ Y R    L+A+ ++  M R     +                   G+++H+  V
Sbjct: 85  WNNIMRSYIRHESPLDAIQVYLGMVRSTVLPDRYSLPIVIKAAVQIHDFTLGKELHSVAV 144

Query: 362 RSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALN 421
           R  F  D +  S  IT+Y K G+   A+ +F+  P + +  WN++I G +  G   EA+ 
Sbjct: 145 RLGFVGDEFCESGFITLYCKAGEFENARKVFDENPERKLGSWNAIIGGLNHAGRANEAVE 204

Query: 422 VFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFES-MKCKYQVEPGIEHYACMVDL 480
           +F DM  SG+ PDD + + V ++C   G +    ++ +  ++ K + +  I     ++D+
Sbjct: 205 MFVDMKRSGLEPDDFTMVSVTASCGGLGDLSLAFQLHKCVLQAKTEEKSDIMMLNSLIDM 264

Query: 481 LGRAGQVNDAVEIVEKMPMEPDAIVWGSLL 510
            G+ G+++ A  I E+M  + + + W S++
Sbjct: 265 YGKCGRMDLASHIFEEM-RQRNVVSWSSMI 293



 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 19/228 (8%)

Query: 86  NGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV- 144
           +G ++ + K G    AR+VFD  P R + SW +++ G    G   EA  +F  M    + 
Sbjct: 156 SGFITLYCKAGEFENARKVFDENPERKLGSWNAIIGGLNHAGRANEAVEMFVDMKRSGLE 215

Query: 145 ------VSWTVMLGGLLKDSRVEDARKLFDMMPVK---DVVAVTNMIGGYCEEGRLEEAR 195
                 VS T   GGL   S      K       +   D++ + ++I  Y + GR++ A 
Sbjct: 216 PDDFTMVSVTASCGGLGDLSLAFQLHKCVLQAKTEEKSDIMMLNSLIDMYGKCGRMDLAS 275

Query: 196 ALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPE----RNEVSWTAMLMGYTHSG 251
            +F+EM +RNVV+W++M+ GYA N     A + F  M E     N++++  +L    H G
Sbjct: 276 HIFEEMRQRNVVSWSSMIVGYAANGNTLEALECFRQMREFGVRPNKITFVGVLSACVHGG 335

Query: 252 RMREASEFFDAMP----VKPVVACNEMIMG-FGFDGDVDRAKAVFEKM 294
            + E   +F  M     ++P ++    I+     DG +  AK V E+M
Sbjct: 336 LVEEGKTYFAMMKSEFELEPGLSHYGCIVDLLSRDGQLKEAKKVVEEM 383



 Score = 76.3 bits (186), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 145/360 (40%), Gaps = 78/360 (21%)

Query: 103 RVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVED 162
           R+ D  P+  +  W +++R Y++  +  +A +++  M    V+     L  ++K      
Sbjct: 74  RILDQYPIAFL--WNNIMRSYIRHESPLDAIQVYLGMVRSTVLPDRYSLPIVIKA----- 126

Query: 163 ARKLFDMMPVKDVVAVTNMIG----GYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYAR 218
           A ++ D    K++ +V   +G     +CE G                       ++ Y +
Sbjct: 127 AVQIHDFTLGKELHSVAVRLGFVGDEFCESG----------------------FITLYCK 164

Query: 219 NRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFF-----------DAMPVKP 267
               + ARK+F+  PER   SW A++ G  H+GR  EA E F           D   V  
Sbjct: 165 AGEFENARKVFDENPERKLGSWNAIIGGLNHAGRANEAVEMFVDMKRSGLEPDDFTMVSV 224

Query: 268 VVAC------------------------------NEMIMGFGFDGDVDRAKAVFEKMRER 297
             +C                              N +I  +G  G +D A  +FE+MR+R
Sbjct: 225 TASCGGLGDLSLAFQLHKCVLQAKTEEKSDIMMLNSLIDMYGKCGRMDLASHIFEEMRQR 284

Query: 298 DDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVH 357
           +  +WS+MI  Y   G  LEAL  F +M+  G   N                 + G+   
Sbjct: 285 NVVSWSSMIVGYAANGNTLEALECFRQMREFGVRPNKITFVGVLSACVHGGLVEEGKTYF 344

Query: 358 ARLVRSEFDQD--LYVASALITMYVKCGDLVRAKWIFNRYPLK-DVVMWNSMITGYSQHG 414
           A +++SEF+ +  L     ++ +  + G L  AK +    P+K +V++W  ++ G  + G
Sbjct: 345 A-MMKSEFELEPGLSHYGCIVDLLSRDGQLKEAKKVVEEMPMKPNVMVWGCLMGGCEKFG 403


>AT5G08305.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:2670134-2671738 REVERSE
           LENGTH=534
          Length = 534

 Score =  223 bits (569), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 123/339 (36%), Positives = 194/339 (57%), Gaps = 4/339 (1%)

Query: 255 EASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGF 314
            A + FD MP K +V  N ++  +   GDV  A+ VF++M ERD  TWS+MI  Y ++G 
Sbjct: 161 SARKLFDEMPHKNLVTWNSILDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGE 220

Query: 315 ELEALGLFARMQREGAA-LNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVAS 373
             +AL +F +M R G++  N                 + G+ VH  ++       + + +
Sbjct: 221 YNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRGKTVHRYILDVHLPLTVILQT 280

Query: 374 ALITMYVKCGDLVRAKWIFNRYPLK--DVVMWNSMITGYSQHGLGEEALNVFRDMCLSGV 431
           +LI MY KCG +  A  +F R  +K  D +MWN++I G + HG   E+L +F  M  S +
Sbjct: 281 SLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIGGLASHGFIRESLQLFHKMRESKI 340

Query: 432 PPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAV 491
            PD+I+F+ +L+ACS+ G VKE    F+S+K +   EP  EHYACMVD+L RAG V DA 
Sbjct: 341 DPDEITFLCLLAACSHGGLVKEAWHFFKSLK-ESGAEPKSEHYACMVDVLSRAGLVKDAH 399

Query: 492 EIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKG 551
           + + +MP++P   + G+LL  C  H  L+LAE   +KL +L+P N G YV L+++YA   
Sbjct: 400 DFISEMPIKPTGSMLGALLNGCINHGNLELAETVGKKLIELQPHNDGRYVGLANVYAINK 459

Query: 552 RWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGD 590
           ++     +RE ++ + V K+ G+S ++++   H F+  D
Sbjct: 460 QFRAARSMREAMEKKGVKKIAGHSILDLDGTRHRFIAHD 498



 Score = 99.8 bits (247), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 112/226 (49%), Gaps = 19/226 (8%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVV 114
           N ++  Y        A  LF+  P KN+V+WN ++  + K+G V  AR VFD M  R+VV
Sbjct: 147 NTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSILDAYAKSGDVVSARLVFDEMSERDVV 206

Query: 115 SWTSMVRGYVQEGNVEEAERLFWRMPEK-----------NVVSWTVMLGGLLKDSRVEDA 163
           +W+SM+ GYV+ G   +A  +F +M              +V+     LG L +   V   
Sbjct: 207 TWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRGKTVH-- 264

Query: 164 RKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALF--DEMPKRNVVTWTTMVSGYARNRR 221
           R + D+     V+  T++I  Y + G + +A ++F    + + + + W  ++ G A +  
Sbjct: 265 RYILDVHLPLTVILQTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIGGLASHGF 324

Query: 222 VDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAM 263
           +  + +LF  M E     +E+++  +L   +H G ++EA  FF ++
Sbjct: 325 IRESLQLFHKMRESKIDPDEITFLCLLAACSHGGLVKEAWHFFKSL 370



 Score = 89.7 bits (221), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 145/317 (45%), Gaps = 29/317 (9%)

Query: 17  FQCTSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFET 76
           F C +   I  Y       +ARK+FDE PH  +   +WN+++ AY ++     A  +F+ 
Sbjct: 144 FICNTL--IHMYGSFRDQASARKLFDEMPH--KNLVTWNSILDAYAKSGDVVSARLVFDE 199

Query: 77  TPEKNIVSWNGMVSGFVKNGMVAEARRVFDAM-----PVRNVVSWTSMV-----RGYVQE 126
             E+++V+W+ M+ G+VK G   +A  +FD M        N V+  S++      G +  
Sbjct: 200 MSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNR 259

Query: 127 GNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAV--TNMIGG 184
           G       L   +P   V+  T ++    K   + DA  +F    VK+  A+    +IGG
Sbjct: 260 GKTVHRYILDVHLP-LTVILQTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIGG 318

Query: 185 YCEEGRLEEARALFDEMPKRNV----VTWTTMVSGYARNRRVDVARKLFEVMPER----N 236
               G + E+  LF +M +  +    +T+  +++  +    V  A   F+ + E      
Sbjct: 319 LASHGFIRESLQLFHKMRESKIDPDEITFLCLLAACSHGGLVKEAWHFFKSLKESGAEPK 378

Query: 237 EVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVA-CNEMIMGFGFDGDVDRAKAVFEKMR 295
              +  M+   + +G +++A +F   MP+KP  +    ++ G    G+++ A+ V +K+ 
Sbjct: 379 SEHYACMVDVLSRAGLVKDAHDFISEMPIKPTGSMLGALLNGCINHGNLELAETVGKKLI 438

Query: 296 E---RDDGTWSAMIKVY 309
           E    +DG +  +  VY
Sbjct: 439 ELQPHNDGRYVGLANVY 455



 Score = 87.0 bits (214), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 127/314 (40%), Gaps = 50/314 (15%)

Query: 63  QAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRG 122
           + ++ H  +     + E+  VS     S    +G V  A +    +       W  ++RG
Sbjct: 23  ELYKIHTLLITLGLSEEEPFVSQTLSFSALSSSGDVDYAYKFLSKLSDPPNYGWNFVIRG 82

Query: 123 YVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVK--------D 174
           +    N E++  ++ +M    ++   +    L+K S     RKL   +           D
Sbjct: 83  FSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSVVKSGLEWD 142

Query: 175 VVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPE 234
           +     +I  Y        AR LFDEMP +N+VTW +++  YA++  V  AR +F+ M E
Sbjct: 143 LFICNTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSILDAYAKSGDVVSARLVFDEMSE 202

Query: 235 RNEVSWTAMLMGYTHSGRMREASEFFDAM------------PVKPVVAC----------- 271
           R+ V+W++M+ GY   G   +A E FD M             V  + AC           
Sbjct: 203 RDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRGKT 262

Query: 272 -----------------NEMIMGFGFDGDVDRAKAVFEK--MRERDDGTWSAMIKVYERK 312
                              +I  +   G +  A +VF +  ++E D   W+A+I      
Sbjct: 263 VHRYILDVHLPLTVILQTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIGGLASH 322

Query: 313 GFELEALGLFARMQ 326
           GF  E+L LF +M+
Sbjct: 323 GFIRESLQLFHKMR 336



 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/284 (20%), Positives = 116/284 (40%), Gaps = 34/284 (11%)

Query: 266 KPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARM 325
           +P V+           GDVD A     K+ +  +  W+ +I+ +       +++ ++ +M
Sbjct: 40  EPFVSQTLSFSALSSSGDVDYAYKFLSKLSDPPNYGWNFVIRGFSNSRNPEKSISVYIQM 99

Query: 326 QREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDL 385
            R G   +                   G  +H  +V+S  + DL++ + LI MY    D 
Sbjct: 100 LRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSVVKSGLEWDLFICNTLIHMYGSFRDQ 159

Query: 386 VRAKWIFNRYPLKDVVMWN-------------------------------SMITGYSQHG 414
             A+ +F+  P K++V WN                               SMI GY + G
Sbjct: 160 ASARKLFDEMPHKNLVTWNSILDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRG 219

Query: 415 LGEEALNVFRDMCLSGVP-PDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEH 473
              +AL +F  M   G    ++++ + V+ AC++ G +  G+ +   +     +   +  
Sbjct: 220 EYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRGKTVHRYI-LDVHLPLTVIL 278

Query: 474 YACMVDLLGRAGQVNDAVEIVEKMPM-EPDAIVWGSLLGACRTH 516
              ++D+  + G + DA  +  +  + E DA++W +++G   +H
Sbjct: 279 QTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIGGLASH 322


>AT2G39620.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:16518968-16521478 REVERSE
           LENGTH=836
          Length = 836

 Score =  223 bits (568), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 177/617 (28%), Positives = 291/617 (47%), Gaps = 75/617 (12%)

Query: 21  STGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEK 80
           S+G I  Y     +  A  VF+E     +  SSW  M+AAY       + + LF+     
Sbjct: 237 SSGLIDMYCNCADLYAAESVFEEV--WRKDESSWGTMMAAYAHNGFFEEVLELFDLMRNY 294

Query: 81  NI----------VSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVE 130
           ++          +     V   VK G+      V   + + +V   TS++  Y + G +E
Sbjct: 295 DVRMNKVAAASALQAAAYVGDLVK-GIAIHDYAVQQGL-IGDVSVATSLMSMYSKCGELE 352

Query: 131 EAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLF-DMMPVK---DVVAVTNMIGGYC 186
            AE+LF  + +++VVSW+ M+    +  + ++A  LF DMM +    + V +T+++ G  
Sbjct: 353 IAEQLFINIEDRDVVSWSAMIASYEQAGQHDEAISLFRDMMRIHIKPNAVTLTSVLQGCA 412

Query: 187 EEGRLEEARALFDEMPKRNV----VTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTA 242
                   +++     K ++     T T ++S YA+  R   A K FE +P ++ V++ A
Sbjct: 413 GVAASRLGKSIHCYAIKADIESELETATAVISMYAKCGRFSPALKAFERLPIKDAVAFNA 472

Query: 243 MLMGYTHSGRMREASEFFDAMPVKPVVA--------------CNE---------MIMGFG 279
           +  GYT  G   +A + +  M +  V                C++          I+  G
Sbjct: 473 LAQGYTQIGDANKAFDVYKNMKLHGVCPDSRTMVGMLQTCAFCSDYARGSCVYGQIIKHG 532

Query: 280 FDGDVDRAKA----------------VFEKMR-ERDDGTWSAMIKVYERKGFELEALGLF 322
           FD +   A A                +F+K   E+   +W+ M+  Y   G   EA+  F
Sbjct: 533 FDSECHVAHALINMFTKCDALAAAIVLFDKCGFEKSTVSWNIMMNGYLLHGQAEEAVATF 592

Query: 323 ARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKC 382
            +M+ E    N                   G  VH+ L++  F     V ++L+ MY KC
Sbjct: 593 RQMKVEKFQPNAVTFVNIVRAAAELSALRVGMSVHSSLIQCGFCSQTPVGNSLVDMYAKC 652

Query: 383 GDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVL 442
           G +  ++  F     K +V WN+M++ Y+ HGL   A+++F  M  + + PD +SF+ VL
Sbjct: 653 GMIESSEKCFIEISNKYIVSWNTMLSAYAAHGLASCAVSLFLSMQENELKPDSVSFLSVL 712

Query: 443 SACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPD 502
           SAC ++G V+EG+ IFE M  ++++E  +EHYACMVDLLG+AG   +AVE++ +M ++  
Sbjct: 713 SACRHAGLVEEGKRIFEEMGERHKIEAEVEHYACMVDLLGKAGLFGEAVEMMRRMRVKTS 772

Query: 503 AIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREK 562
             VWG+LL + R H  L L+  A+ +L +LEP N       SH Y+   R  +V  V  +
Sbjct: 773 VGVWGALLNSSRMHCNLWLSNAALCQLVKLEPLNP------SH-YSQDRRLGEVNNV-SR 824

Query: 563 IKTRSVIKLPGYSWIEV 579
           IK     K+P  SWIEV
Sbjct: 825 IK-----KVPACSWIEV 836



 Score =  168 bits (425), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 121/480 (25%), Positives = 223/480 (46%), Gaps = 20/480 (4%)

Query: 75  ETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAER 134
           E   E ++     +V  + K   +  AR+VFD M V++VV+W +MV G  Q G    A  
Sbjct: 128 EMGLESDVYIGTALVEMYCKARDLVSARQVFDKMHVKDVVTWNTMVSGLAQNGCSSAALL 187

Query: 135 LFWRMPEKNV----VSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAV--TNMIGGYCEE 188
           LF  M    V    VS   ++  + K  + +  R L  ++  K  +    + +I  YC  
Sbjct: 188 LFHDMRSCCVDIDHVSLYNLIPAVSKLEKSDVCRCLHGLVIKKGFIFAFSSGLIDMYCNC 247

Query: 189 GRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPE----RNEVSWTAML 244
             L  A ++F+E+ +++  +W TM++ YA N   +   +LF++M       N+V+  + L
Sbjct: 248 ADLYAAESVFEEVWRKDESSWGTMMAAYAHNGFFEEVLELFDLMRNYDVRMNKVAAASAL 307

Query: 245 MGYTHSGRMREASEFFDAMP----VKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDG 300
               + G + +     D       +  V     ++  +   G+++ A+ +F  + +RD  
Sbjct: 308 QAAAYVGDLVKGIAIHDYAVQQGLIGDVSVATSLMSMYSKCGELEIAEQLFINIEDRDVV 367

Query: 301 TWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARL 360
           +WSAMI  YE+ G   EA+ LF  M R     N                   G+ +H   
Sbjct: 368 SWSAMIASYEQAGQHDEAISLFRDMMRIHIKPNAVTLTSVLQGCAGVAASRLGKSIHCYA 427

Query: 361 VRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEAL 420
           ++++ + +L  A+A+I+MY KCG    A   F R P+KD V +N++  GY+Q G   +A 
Sbjct: 428 IKADIESELETATAVISMYAKCGRFSPALKAFERLPIKDAVAFNALAQGYTQIGDANKAF 487

Query: 421 NVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIF-ESMKCKYQVEPGIEHYACMVD 479
           +V+++M L GV PD  + +G+L  C++      G  ++ + +K  +  E  + H   +++
Sbjct: 488 DVYKNMKLHGVCPDSRTMVGMLQTCAFCSDYARGSCVYGQIIKHGFDSECHVAH--ALIN 545

Query: 480 LLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGP 539
           +  +   +  A+ + +K   E   + W  ++     H +   AE AV    Q++ +   P
Sbjct: 546 MFTKCDALAAAIVLFDKCGFEKSTVSWNIMMNGYLLHGQ---AEEAVATFRQMKVEKFQP 602



 Score =  155 bits (393), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 114/425 (26%), Positives = 200/425 (47%), Gaps = 19/425 (4%)

Query: 101 ARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVV-----SWTVMLGGLL 155
           +R +FD++    VV W SM+RGY + G   EA   F  M E+  +     S+T  L    
Sbjct: 52  SRVIFDSVRDPGVVLWNSMIRGYTRAGLHREALGFFGYMSEEKGIDPDKYSFTFALKACA 111

Query: 156 KDSRVEDARKLFDMMP----VKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTT 211
                +   ++ D++       DV   T ++  YC+   L  AR +FD+M  ++VVTW T
Sbjct: 112 GSMDFKKGLRIHDLIAEMGLESDVYIGTALVEMYCKARDLVSARQVFDKMHVKDVVTWNT 171

Query: 212 MVSGYARNRRVDVARKLFEVM----PERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKP 267
           MVSG A+N     A  LF  M     + + VS   ++   +   +  +       + +K 
Sbjct: 172 MVSGLAQNGCSSAALLLFHDMRSCCVDIDHVSLYNLIPAVSKLEK-SDVCRCLHGLVIKK 230

Query: 268 ---VVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFAR 324
                  + +I  +    D+  A++VFE++  +D+ +W  M+  Y   GF  E L LF  
Sbjct: 231 GFIFAFSSGLIDMYCNCADLYAAESVFEEVWRKDESSWGTMMAAYAHNGFFEEVLELFDL 290

Query: 325 MQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGD 384
           M+     +N                   G  +H   V+     D+ VA++L++MY KCG+
Sbjct: 291 MRNYDVRMNKVAAASALQAAAYVGDLVKGIAIHDYAVQQGLIGDVSVATSLMSMYSKCGE 350

Query: 385 LVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSA 444
           L  A+ +F     +DVV W++MI  Y Q G  +EA+++FRDM    + P+ ++   VL  
Sbjct: 351 LEIAEQLFINIEDRDVVSWSAMIASYEQAGQHDEAISLFRDMMRIHIKPNAVTLTSVLQG 410

Query: 445 CSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAI 504
           C+     + G+ I      K  +E  +E    ++ +  + G+ + A++  E++P++ DA+
Sbjct: 411 CAGVAASRLGKSI-HCYAIKADIESELETATAVISMYAKCGRFSPALKAFERLPIK-DAV 468

Query: 505 VWGSL 509
            + +L
Sbjct: 469 AFNAL 473



 Score = 98.2 bits (243), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 101/210 (48%), Gaps = 1/210 (0%)

Query: 238 VSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRER 297
           +++T +L+        R   +   ++ V  +   N++I  +      D ++ +F+ +R+ 
Sbjct: 3   INYTNLLLMLRECKNFRCLLQVHGSLIVSGLKPHNQLINAYSLFQRQDLSRVIFDSVRDP 62

Query: 298 DDGTWSAMIKVYERKGFELEALGLFARMQRE-GAALNFPXXXXXXXXXXXXXXXDHGRQV 356
               W++MI+ Y R G   EALG F  M  E G   +                   G ++
Sbjct: 63  GVVLWNSMIRGYTRAGLHREALGFFGYMSEEKGIDPDKYSFTFALKACAGSMDFKKGLRI 122

Query: 357 HARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLG 416
           H  +     + D+Y+ +AL+ MY K  DLV A+ +F++  +KDVV WN+M++G +Q+G  
Sbjct: 123 HDLIAEMGLESDVYIGTALVEMYCKARDLVSARQVFDKMHVKDVVTWNTMVSGLAQNGCS 182

Query: 417 EEALNVFRDMCLSGVPPDDISFIGVLSACS 446
             AL +F DM    V  D +S   ++ A S
Sbjct: 183 SAALLLFHDMRSCCVDIDHVSLYNLIPAVS 212



 Score = 85.1 bits (209), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 99/460 (21%), Positives = 180/460 (39%), Gaps = 100/460 (21%)

Query: 212 MVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMP----VKP 267
           +++ Y+  +R D++R +F+ + +   V W +M+ GYT +G  REA  FF  M     + P
Sbjct: 39  LINAYSLFQRQDLSRVIFDSVRDPGVVLWNSMIRGYTRAGLHREALGFFGYMSEEKGIDP 98

Query: 268 --------VVAC------------NEMIMGFGFDGDVD----------------RAKAVF 291
                   + AC            +++I   G + DV                  A+ VF
Sbjct: 99  DKYSFTFALKACAGSMDFKKGLRIHDLIAEMGLESDVYIGTALVEMYCKARDLVSARQVF 158

Query: 292 EKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXD 351
           +KM  +D  TW+ M+    + G    AL LF  M+     ++                 D
Sbjct: 159 DKMHVKDVVTWNTMVSGLAQNGCSSAALLLFHDMRSCCVDIDHVSLYNLIPAVSKLEKSD 218

Query: 352 HGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYS 411
             R +H  +++  F      +S LI MY  C DL  A+ +F     KD   W +M+  Y+
Sbjct: 219 VCRCLHGLVIKKGF--IFAFSSGLIDMYCNCADLYAAESVFEEVWRKDESSWGTMMAAYA 276

Query: 412 QHGLGEEALNVFRDM------------------------CLSGVPPDDIS----FIG--- 440
            +G  EE L +F  M                         + G+   D +     IG   
Sbjct: 277 HNGFFEEVLELFDLMRNYDVRMNKVAAASALQAAAYVGDLVKGIAIHDYAVQQGLIGDVS 336

Query: 441 ----VLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEK 496
               ++S  S  G+++   ++F +++     +  +  ++ M+    +AGQ ++A+ +   
Sbjct: 337 VATSLMSMYSKCGELEIAEQLFINIE-----DRDVVSWSAMIASYEQAGQHDEAISLFRD 391

Query: 497 M---PMEPDAIVWGSLLGAC------RTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMY 547
           M    ++P+A+   S+L  C      R    +    +  +  ++LE   A     +  MY
Sbjct: 392 MMRIHIKPNAVTLTSVLQGCAGVAASRLGKSIHCYAIKADIESELETATA-----VISMY 446

Query: 548 ASKGRWEDVEVVREKIKTRSVIKL----PGYSWIEVEKKA 583
           A  GR+       E++  +  +       GY+ I    KA
Sbjct: 447 AKCGRFSPALKAFERLPIKDAVAFNALAQGYTQIGDANKA 486


>AT4G38010.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr4:17859582-17861261 REVERSE
           LENGTH=559
          Length = 559

 Score =  221 bits (563), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 132/422 (31%), Positives = 219/422 (51%), Gaps = 44/422 (10%)

Query: 196 ALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMRE 255
             +D++  +N +     V G +RN     A K+F  MP R+ VSWT ++ G+T +G  +E
Sbjct: 136 GFYDDIYVQNSLVHFYGVCGESRN-----ACKVFGEMPVRDVVSWTGIITGFTRTGLYKE 190

Query: 256 ASEFFDAMPVKPVVACNEMIM-----------GFGFDG---------------------- 282
           A + F  M V+P +A    ++           G G  G                      
Sbjct: 191 ALDTFSKMDVEPNLATYVCVLVSSGRVGCLSLGKGIHGLILKRASLISLETGNALIDMYV 250

Query: 283 ---DVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQ-REGAALNFPXXX 338
               +  A  VF ++ ++D  +W++MI          EA+ LF+ MQ   G   +     
Sbjct: 251 KCEQLSDAMRVFGELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGIKPDGHILT 310

Query: 339 XXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLK 398
                       DHGR VH  ++ +    D ++ +A++ MY KCG +  A  IFN    K
Sbjct: 311 SVLSACASLGAVDHGRWVHEYILTAGIKWDTHIGTAIVDMYAKCGYIETALEIFNGIRSK 370

Query: 399 DVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIF 458
           +V  WN+++ G + HG G E+L  F +M   G  P+ ++F+  L+AC ++G V EGR  F
Sbjct: 371 NVFTWNALLGGLAIHGHGLESLRYFEEMVKLGFKPNLVTFLAALNACCHTGLVDEGRRYF 430

Query: 459 ESMKCK-YQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHM 517
             MK + Y + P +EHY CM+DLL RAG +++A+E+V+ MP++PD  + G++L AC+   
Sbjct: 431 HKMKSREYNLFPKLEHYGCMIDLLCRAGLLDEALELVKAMPVKPDVRICGAILSACKNRG 490

Query: 518 KL-DLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSW 576
            L +L +  ++    +E +++G YVLLS+++A+  RW+DV  +R  +K + + K+PG S+
Sbjct: 491 TLMELPKEILDSFLDIEFEDSGVYVLLSNIFAANRRWDDVARIRRLMKVKGISKVPGSSY 550

Query: 577 IE 578
           IE
Sbjct: 551 IE 552



 Score = 83.6 bits (205), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 135/327 (41%), Gaps = 57/327 (17%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVR-NV 113
           N++V  Y    +   A  +F   P +++VSW G+++GF + G+  EA   F  M V  N+
Sbjct: 145 NSLVHFYGVCGESRNACKVFGEMPVRDVVSWTGIITGFTRTGLYKEALDTFSKMDVEPNL 204

Query: 114 VSW-----------------------------------TSMVRGYVQEGNVEEAERLFWR 138
            ++                                    +++  YV+   + +A R+F  
Sbjct: 205 ATYVCVLVSSGRVGCLSLGKGIHGLILKRASLISLETGNALIDMYVKCEQLSDAMRVFGE 264

Query: 139 MPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVA-----VTNMIGGYCEEGRLEE 193
           + +K+ VSW  M+ GL+   R ++A  LF +M     +      +T+++      G ++ 
Sbjct: 265 LEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGIKPDGHILTSVLSACASLGAVDH 324

Query: 194 ARALFDEMPKRNVVTW-----TTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYT 248
            R + + +     + W     T +V  YA+   ++ A ++F  +  +N  +W A+L G  
Sbjct: 325 GRWVHEYILTAG-IKWDTHIGTAIVDMYAKCGYIETALEIFNGIRSKNVFTWNALLGGLA 383

Query: 249 HSGRMREASEFFDAM---PVKP-VVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGT--- 301
             G   E+  +F+ M     KP +V     +      G VD  +  F KM+ R+      
Sbjct: 384 IHGHGLESLRYFEEMVKLGFKPNLVTFLAALNACCHTGLVDEGRRYFHKMKSREYNLFPK 443

Query: 302 ---WSAMIKVYERKGFELEALGLFARM 325
              +  MI +  R G   EAL L   M
Sbjct: 444 LEHYGCMIDLLCRAGLLDEALELVKAM 470



 Score = 77.0 bits (188), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 85/160 (53%), Gaps = 5/160 (3%)

Query: 353 GRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQ 412
           G+Q+H  + +  F  D+YV ++L+  Y  CG+   A  +F   P++DVV W  +ITG+++
Sbjct: 125 GKQIHGIVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVSWTGIITGFTR 184

Query: 413 HGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIE 472
            GL +EAL+ F  M    V P+  +++ VL +    G +  G+ I   +  K      +E
Sbjct: 185 TGLYKEALDTFSKM---DVEPNLATYVCVLVSSGRVGCLSLGKGI-HGLILKRASLISLE 240

Query: 473 HYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGA 512
               ++D+  +  Q++DA+ +  ++  + D + W S++  
Sbjct: 241 TGNALIDMYVKCEQLSDAMRVFGELE-KKDKVSWNSMISG 279



 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 106/264 (40%), Gaps = 42/264 (15%)

Query: 20  TSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPE 79
           T    I  Y +  Q+ +A +VF E     +   SWN+M++      +  +A+ LF     
Sbjct: 241 TGNALIDMYVKCEQLSDAMRVFGELEK--KDKVSWNSMISGLVHCERSKEAIDLFSLMQT 298

Query: 80  KNIVSWNG-----MVSGFVKNGMVAEARRVFDAMPVRNVVSW-----TSMVRGYVQEGNV 129
            + +  +G     ++S     G V   R V + +     + W     T++V  Y + G +
Sbjct: 299 SSGIKPDGHILTSVLSACASLGAVDHGRWVHEYILTAG-IKWDTHIGTAIVDMYAKCGYI 357

Query: 130 EEAERLFWRMPEKNVVSWTVMLGGL-LKDSRVEDARKLFDMMPV---KDVVAVTNMIGGY 185
           E A  +F  +  KNV +W  +LGGL +    +E  R   +M+ +    ++V     +   
Sbjct: 358 ETALEIFNGIRSKNVFTWNALLGGLAIHGHGLESLRYFEEMVKLGFKPNLVTFLAALNAC 417

Query: 186 CEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLM 245
           C  G ++E R  F +M  R                        + + P+     +  M+ 
Sbjct: 418 CHTGLVDEGRRYFHKMKSRE-----------------------YNLFPKLEH--YGCMID 452

Query: 246 GYTHSGRMREASEFFDAMPVKPVV 269
               +G + EA E   AMPVKP V
Sbjct: 453 LLCRAGLLDEALELVKAMPVKPDV 476



 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 98/223 (43%), Gaps = 18/223 (8%)

Query: 22  TGAISRYARIGQIENARKVFDE--TPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPE 79
           T  +S  A +G +++ R V +   T  I   T    A+V  Y +      A+ +F     
Sbjct: 310 TSVLSACASLGAVDHGRWVHEYILTAGIKWDTHIGTAIVDMYAKCGYIETALEIFNGIRS 369

Query: 80  KNIVSWNGMVSGFVKNGMVAEARRVFDAMPVR----NVVSWTSMVRGYVQEGNVEEAERL 135
           KN+ +WN ++ G   +G   E+ R F+ M       N+V++ + +      G V+E  R 
Sbjct: 370 KNVFTWNALLGGLAIHGHGLESLRYFEEMVKLGFKPNLVTFLAALNACCHTGLVDEGRRY 429

Query: 136 FWRMPEK------NVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEE- 188
           F +M  +       +  +  M+  L +   +++A +L   MPVK  V +   I   C+  
Sbjct: 430 FHKMKSREYNLFPKLEHYGCMIDLLCRAGLLDEALELVKAMPVKPDVRICGAILSACKNR 489

Query: 189 GRL----EEARALFDEMPKRNVVTWTTMVSGYARNRR-VDVAR 226
           G L    +E    F ++   +   +  + + +A NRR  DVAR
Sbjct: 490 GTLMELPKEILDSFLDIEFEDSGVYVLLSNIFAANRRWDDVAR 532


>AT3G26540.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:9744542-9746644 REVERSE
           LENGTH=700
          Length = 700

 Score =  221 bits (563), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 161/595 (27%), Positives = 266/595 (44%), Gaps = 94/595 (15%)

Query: 24  AISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIV 83
           AI  Y + G +++AR++F+E P   R   SWNA++ A  Q     +   +F       + 
Sbjct: 102 AIEAYGKCGCVDDARELFEEMPE--RDGGSWNAVITACAQNGVSDEVFRMFRRMNRDGVR 159

Query: 84  SWNGMVSGFVKN-GMV--------------------------------------AEARRV 104
           +     +G +K+ G++                                      ++ARRV
Sbjct: 160 ATETSFAGVLKSCGLILDLRLLRQLHCAVVKYGYSGNVDLETSIVDVYGKCRVMSDARRV 219

Query: 105 FDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV-----VSWTVMLGGLLKDSR 159
           FD +   + VSW  +VR Y++ G  +EA  +F++M E NV        +VML      S 
Sbjct: 220 FDEIVNPSDVSWNVIVRRYLEMGFNDEAVVMFFKMLELNVRPLNHTVSSVMLA--CSRSL 277

Query: 160 VEDARKLFDMMPVK-----DVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVS 214
             +  K+   + VK     D V  T++   Y +  RLE AR +FD+   +++ +WT+ +S
Sbjct: 278 ALEVGKVIHAIAVKLSVVADTVVSTSVFDMYVKCDRLESARRVFDQTRSKDLKSWTSAMS 337

Query: 215 GYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVK-------- 266
           GYA +     AR+LF++MPERN VSW AML GY H+    EA +F   M  +        
Sbjct: 338 GYAMSGLTREARELFDLMPERNIVSWNAMLGGYVHAHEWDEALDFLTLMRQEIENIDNVT 397

Query: 267 -------------------------------PVVACNEMIMGFGFDGDVDRAKAVFEKMR 295
                                           V+  N ++  +G  G +  A   F +M 
Sbjct: 398 LVWILNVCSGISDVQMGKQAHGFIYRHGYDTNVIVANALLDMYGKCGTLQSANIWFRQMS 457

Query: 296 E-RDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGR 354
           E RD+ +W+A++    R G   +AL  F  MQ E     +                + G+
Sbjct: 458 ELRDEVSWNALLTGVARVGRSEQALSFFEGMQVEAKPSKYTLATLLAGCANIPAL-NLGK 516

Query: 355 QVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHG 414
            +H  L+R  +  D+ +  A++ MY KC     A  +F     +D+++WNS+I G  ++G
Sbjct: 517 AIHGFLIRDGYKIDVVIRGAMVDMYSKCRCFDYAIEVFKEAATRDLILWNSIIRGCCRNG 576

Query: 415 LGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHY 474
             +E   +F  +   GV PD ++F+G+L AC   G V+ G + F SM  KY + P +EHY
Sbjct: 577 RSKEVFELFMLLENEGVKPDHVTFLGILQACIREGHVELGFQYFSSMSTKYHISPQVEHY 636

Query: 475 ACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKL 529
            CM++L  + G ++   E +  MP +P   +   +  AC+ +    L   A ++L
Sbjct: 637 DCMIELYCKYGCLHQLEEFLLLMPFDPPMQMLTRINDACQRYRWSKLGAWAAKRL 691



 Score =  130 bits (327), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 138/586 (23%), Positives = 229/586 (39%), Gaps = 131/586 (22%)

Query: 20  TSTGAISRYARIGQIENARKVFDETPH---------IHRTTSSWNAMVAAYFQAHQPHQA 70
           T T  I  +   G +  A  V   +P          + R+ SS  A+V    QA +    
Sbjct: 31  TVTRQILEHLEGGNVSKAVSVLFASPEPVSYWLYERLFRSCSS-KALVV---QARKVQSH 86

Query: 71  VTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVE 130
           +  F   P   I   N  +  + K G V +AR +F+ MP R+  SW +++    Q G  +
Sbjct: 87  LVTFSPLPP--IFLLNRAIEAYGKCGCVDDARELFEEMPERDGGSWNAVITACAQNGVSD 144

Query: 131 EAERLFWRMPEKNVVSWTVMLGGLLK------DSRV------------------------ 160
           E  R+F RM    V +      G+LK      D R+                        
Sbjct: 145 EVFRMFRRMNRDGVRATETSFAGVLKSCGLILDLRLLRQLHCAVVKYGYSGNVDLETSIV 204

Query: 161 ---------EDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNV----- 206
                     DAR++FD +     V+   ++  Y E G  +EA  +F +M + NV     
Sbjct: 205 DVYGKCRVMSDARRVFDEIVNPSDVSWNVIVRRYLEMGFNDEAVVMFFKMLELNVRPLNH 264

Query: 207 ----------------------------------VTWTTMVSGYARNRRVDVARKLFEVM 232
                                             V  T++   Y +  R++ AR++F+  
Sbjct: 265 TVSSVMLACSRSLALEVGKVIHAIAVKLSVVADTVVSTSVFDMYVKCDRLESARRVFDQT 324

Query: 233 PERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFE 292
             ++  SWT+ + GY  SG  REA E FD MP + +V+ N M+ G+    + D       
Sbjct: 325 RSKDLKSWTSAMSGYAMSGLTREARELFDLMPERNIVSWNAMLGGYVHAHEWD------- 377

Query: 293 KMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDH 352
                                   EAL     M++E   ++                   
Sbjct: 378 ------------------------EALDFLTLMRQEIENIDNVTLVWILNVCSGISDVQM 413

Query: 353 GRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAK-WIFNRYPLKDVVMWNSMITGYS 411
           G+Q H  + R  +D ++ VA+AL+ MY KCG L  A  W      L+D V WN+++TG +
Sbjct: 414 GKQAHGFIYRHGYDTNVIVANALLDMYGKCGTLQSANIWFRQMSELRDEVSWNALLTGVA 473

Query: 412 QHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESM-KCKYQVEPG 470
           + G  E+AL+ F  M +    P   +   +L+ C+    +  G+ I   + +  Y+++  
Sbjct: 474 RVGRSEQALSFFEGMQVEA-KPSKYTLATLLAGCANIPALNLGKAIHGFLIRDGYKIDVV 532

Query: 471 IEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLL-GACRT 515
           I     MVD+  +    + A+E+ ++     D I+W S++ G CR 
Sbjct: 533 IR--GAMVDMYSKCRCFDYAIEVFKEAATR-DLILWNSIIRGCCRN 575



 Score =  112 bits (279), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 102/394 (25%), Positives = 158/394 (40%), Gaps = 88/394 (22%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKN 81
           T  +  Y +   + +AR+VFDE   ++ +  SWN +V  Y +     +AV +F    E N
Sbjct: 201 TSIVDVYGKCRVMSDARRVFDEI--VNPSDVSWNVIVRRYLEMGFNDEAVVMFFKMLELN 258

Query: 82  IVSWNGMVSG---------------------------------------FVKNGMVAEAR 102
           +   N  VS                                        +VK   +  AR
Sbjct: 259 VRPLNHTVSSVMLACSRSLALEVGKVIHAIAVKLSVVADTVVSTSVFDMYVKCDRLESAR 318

Query: 103 RVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVED 162
           RVFD    +++ SWTS + GY   G   EA  LF  MPE+N+VSW  MLGG +     ++
Sbjct: 319 RVFDQTRSKDLKSWTSAMSGYAMSGLTREARELFDLMPERNIVSWNAMLGGYVHAHEWDE 378

Query: 163 ARKLFDMM--PVKDVVAVT-----NMIGGYCEEGRLEEARA-LFDEMPKRNVVTWTTMVS 214
           A     +M   ++++  VT     N+  G  +    ++A   ++      NV+    ++ 
Sbjct: 379 ALDFLTLMRQEIENIDNVTLVWILNVCSGISDVQMGKQAHGFIYRHGYDTNVIVANALLD 438

Query: 215 GYARNRRVDVARKLFEVMPE-RNEVSWTAMLMGYTHSGRMREASEFFDAMPVK------- 266
            Y +   +  A   F  M E R+EVSW A+L G    GR  +A  FF+ M V+       
Sbjct: 439 MYGKCGTLQSANIWFRQMSELRDEVSWNALLTGVARVGRSEQALSFFEGMQVEAKPSKYT 498

Query: 267 -----------PVVACNEMIMGF----GFDGDV----------------DRAKAVFEKMR 295
                      P +   + I GF    G+  DV                D A  VF++  
Sbjct: 499 LATLLAGCANIPALNLGKAIHGFLIRDGYKIDVVIRGAMVDMYSKCRCFDYAIEVFKEAA 558

Query: 296 ERDDGTWSAMIKVYERKGFELEALGLFARMQREG 329
            RD   W+++I+   R G   E   LF  ++ EG
Sbjct: 559 TRDLILWNSIIRGCCRNGRSKEVFELFMLLENEG 592



 Score = 88.6 bits (218), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 148/343 (43%), Gaps = 19/343 (5%)

Query: 264 PVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFA 323
           P+ P+   N  I  +G  G VD A+ +FE+M ERD G+W+A+I    + G   E   +F 
Sbjct: 92  PLPPIFLLNRAIEAYGKCGCVDDARELFEEMPERDGGSWNAVITACAQNGVSDEVFRMFR 151

Query: 324 RMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCG 383
           RM R+G                        RQ+H  +V+  +  ++ + ++++ +Y KC 
Sbjct: 152 RMNRDGVRATETSFAGVLKSCGLILDLRLLRQLHCAVVKYGYSGNVDLETSIVDVYGKCR 211

Query: 384 DLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLS 443
            +  A+ +F+       V WN ++  Y + G  +EA+ +F  M    V P + +   V+ 
Sbjct: 212 VMSDARRVFDEIVNPSDVSWNVIVRRYLEMGFNDEAVVMFFKMLELNVRPLNHTVSSVML 271

Query: 444 ACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDA 503
           ACS S  ++ G+ +  ++  K  V         + D+  +  ++  A  + ++     D 
Sbjct: 272 ACSRSLALEVGK-VIHAIAVKLSVVADTVVSTSVFDMYVKCDRLESARRVFDQ-TRSKDL 329

Query: 504 IVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWED----VEVV 559
             W S +     +    L   A E    +  +N   +  +   Y     W++    + ++
Sbjct: 330 KSWTSAMSG---YAMSGLTREARELFDLMPERNIVSWNAMLGGYVHAHEWDEALDFLTLM 386

Query: 560 REKIKTRSVIKL-------PGYSWIEVEKKAHMFV---GGDNN 592
           R++I+    + L        G S +++ K+AH F+   G D N
Sbjct: 387 RQEIENIDNVTLVWILNVCSGISDVQMGKQAHGFIYRHGYDTN 429



 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 120/288 (41%), Gaps = 49/288 (17%)

Query: 20  TSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPE 79
            ST     Y +  ++E+AR+VFD+T    +   SW + ++ Y  +    +A  LF+  PE
Sbjct: 300 VSTSVFDMYVKCDRLESARRVFDQTRS--KDLKSWTSAMSGYAMSGLTREARELFDLMPE 357

Query: 80  KNIVSWNGMVSGFVKNGMVAEARRVFDAMPVR---------------------------- 111
           +NIVSWN M+ G+V      EA      M                               
Sbjct: 358 RNIVSWNAMLGGYVHAHEWDEALDFLTLMRQEIENIDNVTLVWILNVCSGISDVQMGKQA 417

Query: 112 -----------NVVSWTSMVRGYVQEGNVEEAERLFWRMPE-KNVVSWTVMLGGLLKDSR 159
                      NV+   +++  Y + G ++ A   F +M E ++ VSW  +L G+ +  R
Sbjct: 418 HGFIYRHGYDTNVIVANALLDMYGKCGTLQSANIWFRQMSELRDEVSWNALLTGVARVGR 477

Query: 160 VEDARKLFDMMPVK---DVVAVTNMIGGYCEEGRLEEARA----LFDEMPKRNVVTWTTM 212
            E A   F+ M V+       +  ++ G      L   +A    L  +  K +VV    M
Sbjct: 478 SEQALSFFEGMQVEAKPSKYTLATLLAGCANIPALNLGKAIHGFLIRDGYKIDVVIRGAM 537

Query: 213 VSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFF 260
           V  Y++ R  D A ++F+    R+ + W +++ G   +GR +E  E F
Sbjct: 538 VDMYSKCRCFDYAIEVFKEAATRDLILWNSIIRGCCRNGRSKEVFELF 585



 Score = 69.3 bits (168), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 98/198 (49%), Gaps = 8/198 (4%)

Query: 352 HGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYS 411
             R+V + LV       +++ +  I  Y KCG +  A+ +F   P +D   WN++IT  +
Sbjct: 79  QARKVQSHLVTFSPLPPIFLLNRAIEAYGKCGCVDDARELFEEMPERDGGSWNAVITACA 138

Query: 412 QHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGI 471
           Q+G+ +E   +FR M   GV   + SF GVL +C     ++  R++  ++  KY     +
Sbjct: 139 QNGVSDEVFRMFRRMNRDGVRATETSFAGVLKSCGLILDLRLLRQLHCAV-VKYGYSGNV 197

Query: 472 EHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQ 531
           +    +VD+ G+   ++DA  + +++ + P  + W  ++   R ++++   + AV    +
Sbjct: 198 DLETSIVDVYGKCRVMSDARRVFDEI-VNPSDVSWNVIV---RRYLEMGFNDEAVVMFFK 253

Query: 532 LEPKNAGPYVLLSHMYAS 549
           +   N  P   L+H  +S
Sbjct: 254 MLELNVRP---LNHTVSS 268


>AT1G74400.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:27963953-27965341 FORWARD
           LENGTH=462
          Length = 462

 Score =  220 bits (561), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 119/350 (34%), Positives = 199/350 (56%), Gaps = 14/350 (4%)

Query: 254 REASEFFDAMPVKPVVACNEMIMGFGFD-GDVDRAKAVFEKMRERDDGT-WSAMIKVYER 311
           R+       +    V+     ++GF    GDVD A+ VF++  E+ +   W+AMI  Y  
Sbjct: 85  RQIHALVRKLGFNAVIQIQTSLVGFYSSVGDVDYARQVFDETPEKQNIVLWTAMISAYTE 144

Query: 312 KGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSE--FDQDL 369
               +EA+ LF RM+ E   L+                   G ++++R ++ +     DL
Sbjct: 145 NENSVEAIELFKRMEAEKIELDGVIVTVALSACADLGAVQMGEEIYSRSIKRKRRLAMDL 204

Query: 370 YVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCL- 428
            + ++L+ MYVK G+  +A+ +F+    KDV  + SMI GY+ +G  +E+L +F+ M   
Sbjct: 205 TLRNSLLNMYVKSGETEKARKLFDESMRKDVTTYTSMIFGYALNGQAQESLELFKKMKTI 264

Query: 429 -----SGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGR 483
                + + P+D++FIGVL ACS+SG V+EG+  F+SM   Y ++P   H+ CMVDL  R
Sbjct: 265 DQSQDTVITPNDVTFIGVLMACSHSGLVEEGKRHFKSMIMDYNLKPREAHFGCMVDLFCR 324

Query: 484 AGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLL 543
           +G + DA E + +MP++P+ ++W +LLGAC  H  ++L E    ++ +L+  + G YV L
Sbjct: 325 SGHLKDAHEFINQMPIKPNTVIWRTLLGACSLHGNVELGEEVQRRIFELDRDHVGDYVAL 384

Query: 544 SHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGG-DNN 592
           S++YASKG W++   +R++++ R   ++PG SWIE+    + FV G DNN
Sbjct: 385 SNIYASKGMWDEKSKMRDRVRKR---RMPGKSWIELGSIINEFVSGPDNN 431



 Score = 87.8 bits (216), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 134/321 (41%), Gaps = 61/321 (19%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKN 81
           T  +  Y+ +G ++ AR+VFDETP                                 ++N
Sbjct: 104 TSLVGFYSSVGDVDYARQVFDETPE--------------------------------KQN 131

Query: 82  IVSWNGMVSGFVKNGMVAEARRVFDAMPVRNV----VSWTSMVRGYVQEGNVEEAERLFW 137
           IV W  M+S + +N    EA  +F  M    +    V  T  +      G V+  E ++ 
Sbjct: 132 IVLWTAMISAYTENENSVEAIELFKRMEAEKIELDGVIVTVALSACADLGAVQMGEEIYS 191

Query: 138 RMPEK------NVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRL 191
           R  ++      ++     +L   +K    E ARKLFD    KDV   T+MI GY   G+ 
Sbjct: 192 RSIKRKRRLAMDLTLRNSLLNMYVKSGETEKARKLFDESMRKDVTTYTSMIFGYALNGQA 251

Query: 192 EEARALFDEMP----------KRNVVTWTTMVSGYARNRRVDVARKLFEVMP-----ERN 236
           +E+  LF +M             N VT+  ++   + +  V+  ++ F+ M      +  
Sbjct: 252 QESLELFKKMKTIDQSQDTVITPNDVTFIGVLMACSHSGLVEEGKRHFKSMIMDYNLKPR 311

Query: 237 EVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGF-GFDGDVDRAKAVFEKMR 295
           E  +  M+  +  SG +++A EF + MP+KP       ++G     G+V+  + V  ++ 
Sbjct: 312 EAHFGCMVDLFCRSGHLKDAHEFINQMPIKPNTVIWRTLLGACSLHGNVELGEEVQRRIF 371

Query: 296 ERDD---GTWSAMIKVYERKG 313
           E D    G + A+  +Y  KG
Sbjct: 372 ELDRDHVGDYVALSNIYASKG 392



 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 88/160 (55%), Gaps = 3/160 (1%)

Query: 353 GRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLK-DVVMWNSMITGYS 411
           GRQ+HA + +  F+  + + ++L+  Y   GD+  A+ +F+  P K ++V+W +MI+ Y+
Sbjct: 84  GRQIHALVRKLGFNAVIQIQTSLVGFYSSVGDVDYARQVFDETPEKQNIVLWTAMISAYT 143

Query: 412 QHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFE-SMKCKYQVEPG 470
           ++    EA+ +F+ M    +  D +     LSAC+  G V+ G EI+  S+K K ++   
Sbjct: 144 ENENSVEAIELFKRMEAEKIELDGVIVTVALSACADLGAVQMGEEIYSRSIKRKRRLAMD 203

Query: 471 IEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLL 510
           +     ++++  ++G+   A ++ ++  M  D   + S++
Sbjct: 204 LTLRNSLLNMYVKSGETEKARKLFDE-SMRKDVTTYTSMI 242



 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/282 (21%), Positives = 116/282 (41%), Gaps = 53/282 (18%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHR----TTSSWNAMVAAYFQAHQPHQAVTLFETT 77
           T A+S  A +G ++   +++  +    R      +  N+++  Y ++ +  +A  LF+ +
Sbjct: 171 TVALSACADLGAVQMGEEIYSRSIKRKRRLAMDLTLRNSLLNMYVKSGETEKARKLFDES 230

Query: 78  PEKNIVSWNGMVSGFVKNGMVAEARRVF----------DAMPVRNVVSWTSMVRGYVQEG 127
             K++ ++  M+ G+  NG   E+  +F          D +   N V++  ++      G
Sbjct: 231 MRKDVTTYTSMIFGYALNGQAQESLELFKKMKTIDQSQDTVITPNDVTFIGVLMACSHSG 290

Query: 128 NVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCE 187
            VEE +R F  M               + D  ++     F             M+  +C 
Sbjct: 291 LVEEGKRHFKSM---------------IMDYNLKPREAHFGC-----------MVDLFCR 324

Query: 188 EGRLEEARALFDEMP-KRNVVTWTTMVSGYARNRRV----DVARKLFEVMPERNEV-SWT 241
            G L++A    ++MP K N V W T++   + +  V    +V R++FE+  +R+ V  + 
Sbjct: 325 SGHLKDAHEFINQMPIKPNTVIWRTLLGACSLHGNVELGEEVQRRIFEL--DRDHVGDYV 382

Query: 242 AMLMGYTHSGRMREASEFFD-----AMPVKPVVACNEMIMGF 278
           A+   Y   G   E S+  D      MP K  +    +I  F
Sbjct: 383 ALSNIYASKGMWDEKSKMRDRVRKRRMPGKSWIELGSIINEF 424


>AT1G64310.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:23866053-23867711 FORWARD
           LENGTH=552
          Length = 552

 Score =  219 bits (558), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 148/504 (29%), Positives = 235/504 (46%), Gaps = 21/504 (4%)

Query: 92  FVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV----VSW 147
           +  N  +  AR++FD  P R+V  W S++R Y +         LF ++   +      ++
Sbjct: 50  YALNDDLISARKLFDVFPERSVFLWNSIIRAYAKAHQFTTVLSLFSQILRSDTRPDNFTY 109

Query: 148 TVMLGGLLKDSRVEDARKLFDMMPVK----DVVAVTNMIGGYCEEGRLEEARALFDEMPK 203
             +  G  +    +  R +  +  V     D +  + ++  Y + G + EA  LF  +P 
Sbjct: 110 ACLARGFSESFDTKGLRCIHGIAIVSGLGFDQICGSAIVKAYSKAGLIVEASKLFCSIPD 169

Query: 204 RNVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEF 259
            ++  W  M+ GY      D    LF +M  R    N  +  A+  G      +  A   
Sbjct: 170 PDLALWNVMILGYGCCGFWDKGINLFNLMQHRGHQPNCYTMVALTSGLIDPSLLLVAWSV 229

Query: 260 FDAMPVK------PVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKG 313
             A  +K        V C  ++  +     +  A +VF  + E D    S++I  Y R G
Sbjct: 230 -HAFCLKINLDSHSYVGC-ALVNMYSRCMCIASACSVFNSISEPDLVACSSLITGYSRCG 287

Query: 314 FELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVAS 373
              EAL LFA ++  G   +                   G++VH+ ++R   + D+ V S
Sbjct: 288 NHKEALHLFAELRMSGKKPDCVLVAIVLGSCAELSDSVSGKEVHSYVIRLGLELDIKVCS 347

Query: 374 ALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPP 433
           ALI MY KCG L  A  +F   P K++V +NS+I G   HG    A   F ++   G+ P
Sbjct: 348 ALIDMYSKCGLLKCAMSLFAGIPEKNIVSFNSLILGLGLHGFASTAFEKFTEILEMGLIP 407

Query: 434 DDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEI 493
           D+I+F  +L  C +SG + +G+EIFE MK ++ +EP  EHY  MV L+G AG++ +A E 
Sbjct: 408 DEITFSALLCTCCHSGLLNKGQEIFERMKSEFGIEPQTEHYVYMVKLMGMAGKLEEAFEF 467

Query: 494 VEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPY-VLLSHMYASKGR 552
           V  +    D+ + G+LL  C  H    LAEV  E + +   +    Y V+LS++YA  GR
Sbjct: 468 VMSLQKPIDSGILGALLSCCEVHENTHLAEVVAENIHKNGEERRSVYKVMLSNVYARYGR 527

Query: 553 WEDVEVVREKIKTRSVIKLPGYSW 576
           W++VE +R+ I      KLPG SW
Sbjct: 528 WDEVERLRDGISESYGGKLPGISW 551



 Score =  116 bits (291), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 159/374 (42%), Gaps = 25/374 (6%)

Query: 173 KDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVM 232
           +D    T +   Y     L  AR LFD  P+R+V  W +++  YA+  +      LF  +
Sbjct: 38  RDPYFATQLARFYALNDDLISARKLFDVFPERSVFLWNSIIRAYAKAHQFTTVLSLFSQI 97

Query: 233 PERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFD----------- 281
              +          +T++   R  SE FD   ++ +     ++ G GFD           
Sbjct: 98  LRSDTRP-----DNFTYACLARGFSESFDTKGLRCIHGI-AIVSGLGFDQICGSAIVKAY 151

Query: 282 ---GDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXX 338
              G +  A  +F  + + D   W+ MI  Y   GF  + + LF  MQ  G   N     
Sbjct: 152 SKAGLIVEASKLFCSIPDPDLALWNVMILGYGCCGFWDKGINLFNLMQHRGHQPNCYTMV 211

Query: 339 XXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLK 398
                            VHA  ++   D   YV  AL+ MY +C  +  A  +FN     
Sbjct: 212 ALTSGLIDPSLLLVAWSVHAFCLKINLDSHSYVGCALVNMYSRCMCIASACSVFNSISEP 271

Query: 399 DVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIF 458
           D+V  +S+ITGYS+ G  +EAL++F ++ +SG  PD +    VL +C+       G+E+ 
Sbjct: 272 DLVACSSLITGYSRCGNHKEALHLFAELRMSGKKPDCVLVAIVLGSCAELSDSVSGKEV- 330

Query: 459 ESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMK 518
            S   +  +E  I+  + ++D+  + G +  A+ +   +P E + + + SL+     H  
Sbjct: 331 HSYVIRLGLELDIKVCSALIDMYSKCGLLKCAMSLFAGIP-EKNIVSFNSLILGLGLH-- 387

Query: 519 LDLAEVAVEKLAQL 532
              A  A EK  ++
Sbjct: 388 -GFASTAFEKFTEI 400



 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 130/297 (43%), Gaps = 53/297 (17%)

Query: 18  QCTSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAY---------------- 61
           Q   +  +  Y++ G I  A K+F   P      + WN M+  Y                
Sbjct: 141 QICGSAIVKAYSKAGLIVEASKLFCSIPD--PDLALWNVMILGYGCCGFWDKGINLFNLM 198

Query: 62  -FQAHQPHQ----AVTLFETTPEKNIVSWN------------------GMVSGFVKNGMV 98
             + HQP+     A+T     P   +V+W+                   +V+ + +   +
Sbjct: 199 QHRGHQPNCYTMVALTSGLIDPSLLLVAWSVHAFCLKINLDSHSYVGCALVNMYSRCMCI 258

Query: 99  AEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLF--WRMPEK--NVVSWTVMLGGL 154
           A A  VF+++   ++V+ +S++ GY + GN +EA  LF   RM  K  + V   ++LG  
Sbjct: 259 ASACSVFNSISEPDLVACSSLITGYSRCGNHKEALHLFAELRMSGKKPDCVLVAIVLGSC 318

Query: 155 LKDSRVEDARKLFDMMP----VKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWT 210
            + S     +++   +       D+   + +I  Y + G L+ A +LF  +P++N+V++ 
Sbjct: 319 AELSDSVSGKEVHSYVIRLGLELDIKVCSALIDMYSKCGLLKCAMSLFAGIPEKNIVSFN 378

Query: 211 TMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAM 263
           +++ G   +     A + F  + E     +E++++A+L    HSG + +  E F+ M
Sbjct: 379 SLILGLGLHGFASTAFEKFTEILEMGLIPDEITFSALLCTCCHSGLLNKGQEIFERM 435



 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 81/169 (47%), Gaps = 17/169 (10%)

Query: 354 RQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQH 413
           +++H+ + +S+  +D Y A+ L   Y    DL+ A+ +F+ +P + V +WNS+I  Y++ 
Sbjct: 25  QKLHSFVTKSKLARDPYFATQLARFYALNDDLISARKLFDVFPERSVFLWNSIIRAYAKA 84

Query: 414 GLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEP---- 469
                 L++F  +  S   PD+ ++  +    S S   K        ++C + +      
Sbjct: 85  HQFTTVLSLFSQILRSDTRPDNFTYACLARGFSESFDTK-------GLRCIHGIAIVSGL 137

Query: 470 GIEHY--ACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLL---GAC 513
           G +    + +V    +AG + +A ++   +P +PD  +W  ++   G C
Sbjct: 138 GFDQICGSAIVKAYSKAGLIVEASKLFCSIP-DPDLALWNVMILGYGCC 185


>AT5G66500.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:26548076-26549674 REVERSE
           LENGTH=532
          Length = 532

 Score =  219 bits (557), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 158/508 (31%), Positives = 268/508 (52%), Gaps = 31/508 (6%)

Query: 92  FVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM----PEKNVVSW 147
           F++N     A  +FD +P R++ S  S +  +++ GN  +   LF ++    P+ +  ++
Sbjct: 29  FIRN-FATHADHLFDELPQRDLSSLNSQLSSHLRSGNPNDTLALFLQIHRASPDLSSHTF 87

Query: 148 TVMLGGLLKDSRVEDARKLFDMMPVKD----VVAVTNMIGGYCEEGRLEEARALFDEMPK 203
           T +LG     S  E  R++  +M  +      ++ T +I  Y + G L ++  +F+ + +
Sbjct: 88  TPVLGACSLLSYPETGRQVHALMIKQGAETGTISKTALIDMYSKYGHLVDSVRVFESVEE 147

Query: 204 RNVVTWTTMVSGYARNRRVDVARKLFEVM-PERNEVSWTAM--LMGYTHSGRMREASEFF 260
           +++V+W  ++SG+ RN +   A  +F  M  ER E+S   +  ++    S ++ +  +  
Sbjct: 148 KDLVSWNALLSGFLRNGKGKEALGVFAAMYRERVEISEFTLSSVVKTCASLKILQQGKQV 207

Query: 261 DAMPVKP----VVACNEMIMGFGFDGDVDRAKAVFEKMR-ERDDGTWSAMIKVYERKGFE 315
            AM V      VV    MI  +   G ++ A  V+  +    D+   +++I    R    
Sbjct: 208 HAMVVVTGRDLVVLGTAMISFYSSVGLINEAMKVYNSLNVHTDEVMLNSLISGCIRNRNY 267

Query: 316 LEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASAL 375
            EA  L +R QR     N                   G+Q+H   +R+ F  D  + + L
Sbjct: 268 KEAFLLMSR-QRP----NVRVLSSSLAGCSDNSDLWIGKQIHCVALRNGFVSDSKLCNGL 322

Query: 376 ITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCL--SGVPP 433
           + MY KCG +V+A+ IF   P K VV W SMI  Y+ +G G +AL +FR+MC   SGV P
Sbjct: 323 MDMYGKCGQIVQARTIFRAIPSKSVVSWTSMIDAYAVNGDGVKALEIFREMCEEGSGVLP 382

Query: 434 DDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEI 493
           + ++F+ V+SAC+++G VKEG+E F  MK KY++ PG EHY C +D+L +AG+  +   +
Sbjct: 383 NSVTFLVVISACAHAGLVKEGKECFGMMKEKYRLVPGTEHYVCFIDILSKAGETEEIWRL 442

Query: 494 VEKMPMEPD-----AIVWGSLLGACRTHMKLDLAE-VAVEKLAQLEPKNAGPYVLLSHMY 547
           VE+M ME D       +W ++L AC  +M L   E VA   + +  P+NA  YVL+S+ Y
Sbjct: 443 VERM-MENDNQSIPCAIWVAVLSACSLNMDLTRGEYVARRLMEETGPENASIYVLVSNFY 501

Query: 548 ASKGRWEDVEVVREKIKTRSVIKLPGYS 575
           A+ G+W+ VE +R K+K + ++K  G+S
Sbjct: 502 AAMGKWDVVEELRGKLKNKGLVKTAGHS 529



 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 134/298 (44%), Gaps = 23/298 (7%)

Query: 51  TSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPV 110
           T S  A++  Y +      +V +FE+  EK++VSWN ++SGF++NG   EA  VF AM  
Sbjct: 119 TISKTALIDMYSKYGHLVDSVRVFESVEEKDLVSWNALLSGFLRNGKGKEALGVFAAMYR 178

Query: 111 RNV----VSWTSMVRG-----YVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVE 161
             V     + +S+V+       +Q+G  ++   +        VV  T M+        + 
Sbjct: 179 ERVEISEFTLSSVVKTCASLKILQQG--KQVHAMVVVTGRDLVVLGTAMISFYSSVGLIN 236

Query: 162 DARKLFDMMPV-KDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNR 220
           +A K+++ + V  D V + ++I G       +EA  L     + NV   ++ ++G + N 
Sbjct: 237 EAMKVYNSLNVHTDEVMLNSLISGCIRNRNYKEAFLLMSR-QRPNVRVLSSSLAGCSDNS 295

Query: 221 RVDVARKLFEVMPERNEVSWTAMLMG----YTHSGRMREASEFFDAMPVKPVVACNEMIM 276
            + + +++  V      VS + +  G    Y   G++ +A   F A+P K VV+   MI 
Sbjct: 296 DLWIGKQIHCVALRNGFVSDSKLCNGLMDMYGKCGQIVQARTIFRAIPSKSVVSWTSMID 355

Query: 277 GFGFDGDVDRAKAVFEKMRERDDG------TWSAMIKVYERKGFELEALGLFARMQRE 328
            +  +GD  +A  +F +M E   G      T+  +I      G   E    F  M+ +
Sbjct: 356 AYAVNGDGVKALEIFREMCEEGSGVLPNSVTFLVVISACAHAGLVKEGKECFGMMKEK 413



 Score = 69.3 bits (168), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 59/274 (21%), Positives = 131/274 (47%), Gaps = 17/274 (6%)

Query: 73  LFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEA 132
           + +   E   +S   ++  + K G + ++ RVF+++  +++VSW +++ G+++ G  +EA
Sbjct: 110 MIKQGAETGTISKTALIDMYSKYGHLVDSVRVFESVEEKDLVSWNALLSGFLRNGKGKEA 169

Query: 133 ERLFWRMPEKNVVSWTVMLGGLLKDSR----VEDARKLFDMMPV--KDVVAV-TNMIGGY 185
             +F  M  + V      L  ++K       ++  +++  M+ V  +D+V + T MI  Y
Sbjct: 170 LGVFAAMYRERVEISEFTLSSVVKTCASLKILQQGKQVHAMVVVTGRDLVVLGTAMISFY 229

Query: 186 CEEGRLEEARALFDEMP-KRNVVTWTTMVSGYARNRRVDVARKLFEVMPER--NEVSWTA 242
              G + EA  +++ +    + V   +++SG  RNR     ++ F +M  +  N    ++
Sbjct: 230 SSVGLINEAMKVYNSLNVHTDEVMLNSLISGCIRNRNY---KEAFLLMSRQRPNVRVLSS 286

Query: 243 MLMGYTHSGRMREASEFFDAMPVKPVVA----CNEMIMGFGFDGDVDRAKAVFEKMRERD 298
            L G + +  +    +          V+    CN ++  +G  G + +A+ +F  +  + 
Sbjct: 287 SLAGCSDNSDLWIGKQIHCVALRNGFVSDSKLCNGLMDMYGKCGQIVQARTIFRAIPSKS 346

Query: 299 DGTWSAMIKVYERKGFELEALGLFARMQREGAAL 332
             +W++MI  Y   G  ++AL +F  M  EG+ +
Sbjct: 347 VVSWTSMIDAYAVNGDGVKALEIFREMCEEGSGV 380



 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 83/192 (43%), Gaps = 41/192 (21%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETT-PEK 80
           T  IS Y+ +G I  A KV++ + ++H      N++++   +     +A  L     P  
Sbjct: 223 TAMISFYSSVGLINEAMKVYN-SLNVHTDEVMLNSLISGCIRNRNYKEAFLLMSRQRPNV 281

Query: 81  NIVS------------W---------------------NGMVSGFVKNGMVAEARRVFDA 107
            ++S            W                     NG++  + K G + +AR +F A
Sbjct: 282 RVLSSSLAGCSDNSDLWIGKQIHCVALRNGFVSDSKLCNGLMDMYGKCGQIVQARTIFRA 341

Query: 108 MPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEK------NVVSWTVMLGGLLKDSRVE 161
           +P ++VVSWTSM+  Y   G+  +A  +F  M E+      N V++ V++        V+
Sbjct: 342 IPSKSVVSWTSMIDAYAVNGDGVKALEIFREMCEEGSGVLPNSVTFLVVISACAHAGLVK 401

Query: 162 DARKLFDMMPVK 173
           + ++ F MM  K
Sbjct: 402 EGKECFGMMKEK 413


>AT3G20730.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:7247095-7248878 FORWARD
           LENGTH=564
          Length = 564

 Score =  218 bits (554), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 146/528 (27%), Positives = 255/528 (48%), Gaps = 55/528 (10%)

Query: 88  MVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSW 147
           ++  ++K G V  AR++FD +  R+VVSWT+M+  + + G   +A  LF  M  ++V + 
Sbjct: 53  LIDLYLKQGDVKHARKLFDRISKRDVVSWTAMISRFSRCGYHPDALLLFKEMHREDVKAN 112

Query: 148 TVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGG----------YCEEGRLEEARAL 197
               G +LK  +  D   L + M +   V   N  G           Y   G++EEAR  
Sbjct: 113 QFTYGSVLKSCK--DLGCLKEGMQIHGSVEKGNCAGNLIVRSALLSLYARCGKMEEARLQ 170

Query: 198 FDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREAS 257
           FD M +R++V+W  M+ GY  N   D +  LF++M                  G+  +  
Sbjct: 171 FDSMKERDLVSWNAMIDGYTANACADTSFSLFQLMLTE---------------GKKPDCF 215

Query: 258 EFFDAMPVKPVVACNEMI---------MGFGFD--------------GDVDRAKAVFEKM 294
            F   +    VV C E++         +GFG                G +  A  + E  
Sbjct: 216 TFGSLLRASIVVKCLEIVSELHGLAIKLGFGRSSALIRSLVNAYVKCGSLANAWKLHEGT 275

Query: 295 RERDDGTWSAMIKVY-ERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHG 353
           ++RD  + +A+I  + ++     +A  +F  M R    ++                   G
Sbjct: 276 KKRDLLSCTALITGFSQQNNCTSDAFDIFKDMIRMKTKMDEVVVSSMLKICTTIASVTIG 335

Query: 354 RQVHA-RLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQ 412
           RQ+H   L  S+   D+ + ++LI MY K G++  A   F     KDV  W S+I GY +
Sbjct: 336 RQIHGFALKSSQIRFDVALGNSLIDMYAKSGEIEDAVLAFEEMKEKDVRSWTSLIAGYGR 395

Query: 413 HGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIE 472
           HG  E+A++++  M    + P+D++F+ +LSACS++G+ + G +I+++M  K+ +E   E
Sbjct: 396 HGNFEKAIDLYNRMEHERIKPNDVTFLSLLSACSHTGQTELGWKIYDTMINKHGIEAREE 455

Query: 473 HYACMVDLLGRAGQVNDAVEIVEKMP--MEPDAIVWGSLLGACRTHMKLDLAEVAVEKLA 530
           H +C++D+L R+G + +A  ++      +   +  WG+ L ACR H  + L++VA  +L 
Sbjct: 456 HLSCIIDMLARSGYLEEAYALIRSKEGIVSLSSSTWGAFLDACRRHGNVQLSKVAATQLL 515

Query: 531 QLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIK-TRSVIKLPGYSWI 577
            +EP+    Y+ L+ +YA+ G W++    R+ +K + S  K PGYS +
Sbjct: 516 SMEPRKPVNYINLASVYAANGAWDNALNTRKLMKESGSCNKAPGYSLV 563



 Score = 92.4 bits (228), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 78/361 (21%), Positives = 153/361 (42%), Gaps = 59/361 (16%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFET-------- 76
           I  Y + G +++ARK+FD      R   SW AM++ + +      A+ LF+         
Sbjct: 54  IDLYLKQGDVKHARKLFDRISK--RDVVSWTAMISRFSRCGYHPDALLLFKEMHREDVKA 111

Query: 77  --------------------------TPEK-----NIVSWNGMVSGFVKNGMVAEARRVF 105
                                     + EK     N++  + ++S + + G + EAR  F
Sbjct: 112 NQFTYGSVLKSCKDLGCLKEGMQIHGSVEKGNCAGNLIVRSALLSLYARCGKMEEARLQF 171

Query: 106 DAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARK 165
           D+M  R++VSW +M+ GY      + +  LF  M  +         G LL+ S V    +
Sbjct: 172 DSMKERDLVSWNAMIDGYTANACADTSFSLFQLMLTEGKKPDCFTFGSLLRASIVVKCLE 231

Query: 166 LFDMMP--------VKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYA 217
           +   +          +    + +++  Y + G L  A  L +   KR++++ T +++G++
Sbjct: 232 IVSELHGLAIKLGFGRSSALIRSLVNAYVKCGSLANAWKLHEGTKKRDLLSCTALITGFS 291

Query: 218 RNRRV-----DVARKLFEVMPERNEVSWTAML-----MGYTHSGRMREASEFFDAMPVKP 267
           +         D+ + +  +  + +EV  ++ML     +     GR         +     
Sbjct: 292 QQNNCTSDAFDIFKDMIRMKTKMDEVVVSSMLKICTTIASVTIGRQIHGFALKSSQIRFD 351

Query: 268 VVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQR 327
           V   N +I  +   G+++ A   FE+M+E+D  +W+++I  Y R G   +A+ L+ RM+ 
Sbjct: 352 VALGNSLIDMYAKSGEIEDAVLAFEEMKEKDVRSWTSLIAGYGRHGNFEKAIDLYNRMEH 411

Query: 328 E 328
           E
Sbjct: 412 E 412



 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 83/155 (53%), Gaps = 2/155 (1%)

Query: 356 VHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGL 415
           +H   + + F  +L +   LI +Y+K GD+  A+ +F+R   +DVV W +MI+ +S+ G 
Sbjct: 34  IHGNSITNGFCSNLQLKDMLIDLYLKQGDVKHARKLFDRISKRDVVSWTAMISRFSRCGY 93

Query: 416 GEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYA 475
             +AL +F++M    V  +  ++  VL +C   G +KEG +I  S++ K      +   +
Sbjct: 94  HPDALLLFKEMHREDVKANQFTYGSVLKSCKDLGCLKEGMQIHGSVE-KGNCAGNLIVRS 152

Query: 476 CMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLL 510
            ++ L  R G++ +A    + M  E D + W +++
Sbjct: 153 ALLSLYARCGKMEEARLQFDSMK-ERDLVSWNAMI 186



 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 85/182 (46%), Gaps = 17/182 (9%)

Query: 86  NGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEK--- 142
           N ++  + K+G + +A   F+ M  ++V SWTS++ GY + GN E+A  L+ RM  +   
Sbjct: 356 NSLIDMYAKSGEIEDAVLAFEEMKEKDVRSWTSLIAGYGRHGNFEKAIDLYNRMEHERIK 415

Query: 143 -NVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVA-----VTNMIGGYCEEGRLEEARA 196
            N V++  +L       + E   K++D M  K  +      ++ +I      G LEEA A
Sbjct: 416 PNDVTFLSLLSACSHTGQTELGWKIYDTMINKHGIEAREEHLSCIIDMLARSGYLEEAYA 475

Query: 197 LF---DEMPKRNVVTWTTMVSGYARNRRVDVAR----KLFEVMPERNEVSWTAMLMGYTH 249
           L    + +   +  TW   +    R+  V +++    +L  + P R  V++  +   Y  
Sbjct: 476 LIRSKEGIVSLSSSTWGAFLDACRRHGNVQLSKVAATQLLSMEP-RKPVNYINLASVYAA 534

Query: 250 SG 251
           +G
Sbjct: 535 NG 536


>AT4G19220.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:10505266-10508121 REVERSE
           LENGTH=932
          Length = 932

 Score =  216 bits (549), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 159/610 (26%), Positives = 280/610 (45%), Gaps = 79/610 (12%)

Query: 44  TPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARR 103
           +P  H   S  N++++ Y +      A T+FE    ++++S N +++GF  NGM  EA  
Sbjct: 321 SPEAH--VSVGNSIISMYSKCGDTEAAETVFEELVCRDVISSNAILNGFAANGMFEEAFG 378

Query: 104 VFDAMP--------VRNVVSWTSM------------VRGYV------------------- 124
           + + M         +  VVS TS+            V GY                    
Sbjct: 379 ILNQMQSVDKIQPDIATVVSITSICGDLSFSREGRAVHGYTVRMEMQSRALEVINSVIDM 438

Query: 125 --QEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLF---------DMMPVK 173
             + G   +AE LF     +++VSW  M+    ++     A+ LF             + 
Sbjct: 439 YGKCGLTTQAELLFKTTTHRDLVSWNSMISAFSQNGFTHKAKNLFKEVVSEYSCSKFSLS 498

Query: 174 DVVAVT-------NMIGG---YC---EEGRLEEARALFDEMPK-RNVVTWTTMVSGYARN 219
            V+A+        ++I G   +C   + G L  A    + M + R++ +W +++SG A +
Sbjct: 499 TVLAILTSCDSSDSLIFGKSVHCWLQKLGDLTSAFLRLETMSETRDLTSWNSVISGCASS 558

Query: 220 RRVDVARKLFEVMPERNEV--SWTAMLMGYTHSGRMREASE--FFDAMPVKPVVAC---- 271
                + + F+ M    ++      +L   + SG +    +   F  + +K +       
Sbjct: 559 GHHLESLRAFQAMSREGKIRHDLITLLGTISASGNLGLVLQGRCFHGLAIKSLRELDTQL 618

Query: 272 -NEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGA 330
            N +I  +G   D++ A  VF  + + +  +W+ +I    +     E   LF  ++ E  
Sbjct: 619 QNTLITMYGRCKDIESAVKVFGLISDPNLCSWNCVISALSQNKAGREVFQLFRNLKLEPN 678

Query: 331 ALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKW 390
            + F                 +G Q H  L+R  F  + +V++AL+ MY  CG L     
Sbjct: 679 EITF---VGLLSASTQLGSTSYGMQAHCHLIRRGFQANPFVSAALVDMYSSCGMLETGMK 735

Query: 391 IFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCL-SGVPPDDISFIGVLSACSYSG 449
           +F    +  +  WNS+I+ +  HG+GE+A+ +F+++   S + P+  SFI +LSACS+SG
Sbjct: 736 VFRNSGVNSISAWNSVISAHGFHGMGEKAMELFKELSSNSEMEPNKSSFISLLSACSHSG 795

Query: 450 KVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSL 509
            + EG   ++ M+ K+ V+P  EH   +VD+LGRAG++ +A E +  +     A VWG+L
Sbjct: 796 FIDEGLSYYKQMEEKFGVKPVTEHRVWIVDMLGRAGKLREAYEFITGIGEPQKAGVWGAL 855

Query: 510 LGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVI 569
           L AC  H    L +   E L ++EP NA  Y+ L++ Y   G WE+   +R+ ++  ++ 
Sbjct: 856 LSACNYHGDTKLGKEVAEVLFEMEPDNASYYISLANTYVGLGGWEEAVRLRKMVEDNALK 915

Query: 570 KLPGYSWIEV 579
           KLPGYS I+V
Sbjct: 916 KLPGYSVIDV 925



 Score =  131 bits (329), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 128/576 (22%), Positives = 231/576 (40%), Gaps = 91/576 (15%)

Query: 51  TSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAM-- 108
           +S  NA++  Y +      A  +F     ++IVSWN +++  + NG   ++ + F +M  
Sbjct: 223 SSLCNALMNLYAKGENLSSAECVFTHMEHRDIVSWNTIMTKCLANGHPRKSLQYFKSMTG 282

Query: 109 ---------------------------------------PVRNVVSWTSMVRGYVQEGNV 129
                                                  P  +V    S++  Y + G+ 
Sbjct: 283 SGQEADTVTFSCVISACSSIEELTLGESLHGLVIKSGYSPEAHVSVGNSIISMYSKCGDT 342

Query: 130 EEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKD--------VVAVTNM 181
           E AE +F  +  ++V+S   +L G   +   E+A  + + M   D        VV++T++
Sbjct: 343 EAAETVFEELVCRDVISSNAILNGFAANGMFEEAFGILNQMQSVDKIQPDIATVVSITSI 402

Query: 182 IG--GYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVS 239
            G   +  EGR      +  EM  R +    +++  Y +      A  LF+    R+ VS
Sbjct: 403 CGDLSFSREGRAVHGYTVRMEMQSRALEVINSVIDMYGKCGLTTQAELLFKTTTHRDLVS 462

Query: 240 WTAMLMGYTHSGRMREASEFFD-------------AMPVKPVVAC---NEMIMGFGFD-- 281
           W +M+  ++ +G   +A   F              +  +  + +C   + +I G      
Sbjct: 463 WNSMISAFSQNGFTHKAKNLFKEVVSEYSCSKFSLSTVLAILTSCDSSDSLIFGKSVHCW 522

Query: 282 ----GDVDRAKAVFEKMRE-RDDGTWSAMIKVYERKGFELEALGLFARMQREGAAL-NFP 335
               GD+  A    E M E RD  +W+++I      G  LE+L  F  M REG    +  
Sbjct: 523 LQKLGDLTSAFLRLETMSETRDLTSWNSVISGCASSGHHLESLRAFQAMSREGKIRHDLI 582

Query: 336 XXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRY 395
                            GR  H   ++S  + D  + + LITMY +C D+  A  +F   
Sbjct: 583 TLLGTISASGNLGLVLQGRCFHGLAIKSLRELDTQLQNTLITMYGRCKDIESAVKVFGLI 642

Query: 396 PLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGR 455
              ++  WN +I+  SQ+  G E   +FR++ L    P++I+F+G+LSA +  G    G 
Sbjct: 643 SDPNLCSWNCVISALSQNKAGREVFQLFRNLKL---EPNEITFVGLLSASTQLGSTSYGM 699

Query: 456 EIF-ESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACR 514
           +     ++  +Q  P +   A +VD+    G +   +++     +   +  W S++ A  
Sbjct: 700 QAHCHLIRRGFQANPFVS--AALVDMYSSCGMLETGMKVFRNSGVNSIS-AWNSVISAHG 756

Query: 515 THMKLDLAEVAVEKLAQL------EPKNAGPYVLLS 544
            H    + E A+E   +L      EP  +    LLS
Sbjct: 757 FH---GMGEKAMELFKELSSNSEMEPNKSSFISLLS 789



 Score =  105 bits (263), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 76/352 (21%), Positives = 153/352 (43%), Gaps = 12/352 (3%)

Query: 172 VKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLF-E 230
           ++D+   + ++  Y   G L  +  LFDE+ +++V+ W +M++   +N R   A  LF E
Sbjct: 119 LQDLATSSKLLTFYGRTGELVSSSCLFDELKEKDVIVWNSMITALNQNGRYIAAVGLFIE 178

Query: 231 VMPERNEV---SWTAMLMGYTHSGRMREASEF----FDAMPVKPVVACNEMIMGFGFDGD 283
           ++ + NE    +        +     R+ S       +   V     CN ++  +    +
Sbjct: 179 MIHKGNEFDSTTLLLAASALSSLHLSRKCSMLHCLAIETGLVGDSSLCNALMNLYAKGEN 238

Query: 284 VDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXX 343
           +  A+ VF  M  RD  +W+ ++      G   ++L  F  M   G   +          
Sbjct: 239 LSSAECVFTHMEHRDIVSWNTIMTKCLANGHPRKSLQYFKSMTGSGQEADTVTFSCVISA 298

Query: 344 XXXXXXXDHGRQVHARLVRSEFDQDLYVA--SALITMYVKCGDLVRAKWIFNRYPLKDVV 401
                    G  +H  +++S +  + +V+  +++I+MY KCGD   A+ +F     +DV+
Sbjct: 299 CSSIEELTLGESLHGLVIKSGYSPEAHVSVGNSIISMYSKCGDTEAAETVFEELVCRDVI 358

Query: 402 MWNSMITGYSQHGLGEEALNVFRDM-CLSGVPPDDISFIGVLSACSYSGKVKEGREIFES 460
             N+++ G++ +G+ EEA  +   M  +  + PD  + + + S C      +EGR +   
Sbjct: 359 SSNAILNGFAANGMFEEAFGILNQMQSVDKIQPDIATVVSITSICGDLSFSREGRAVHGY 418

Query: 461 MKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGA 512
                     +E    ++D+ G+ G    A E++ K     D + W S++ A
Sbjct: 419 TVRMEMQSRALEVINSVIDMYGKCGLTTQA-ELLFKTTTHRDLVSWNSMISA 469



 Score =  103 bits (256), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 102/459 (22%), Positives = 192/459 (41%), Gaps = 44/459 (9%)

Query: 80  KNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM 139
           +++ + + +++ + + G +  +  +FD +  ++V+ W SM+    Q G    A  LF  M
Sbjct: 120 QDLATSSKLLTFYGRTGELVSSSCLFDELKEKDVIVWNSMITALNQNGRYIAAVGLFIEM 179

Query: 140 PEK-NVVSWTVMLGGLLKDSRVEDARKL-------FDMMPVKDVVAVTNMIGGYCEEGRL 191
             K N    T +L      S +  +RK         +   V D      ++  Y +   L
Sbjct: 180 IHKGNEFDSTTLLLAASALSSLHLSRKCSMLHCLAIETGLVGDSSLCNALMNLYAKGENL 239

Query: 192 EEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMP----ERNEVSWTAMLMGY 247
             A  +F  M  R++V+W T+++    N     + + F+ M     E + V+++ ++   
Sbjct: 240 SSAECVFTHMEHRDIVSWNTIMTKCLANGHPRKSLQYFKSMTGSGQEADTVTFSCVISAC 299

Query: 248 THSGRMREASEFFDAM------PVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGT 301
           +    +         +      P   V   N +I  +   GD + A+ VFE++  RD  +
Sbjct: 300 SSIEELTLGESLHGLVIKSGYSPEAHVSVGNSIISMYSKCGDTEAAETVFEELVCRDVIS 359

Query: 302 WSAMIKVYERKGFELEALGLFARMQR-EGAALNFPXXXXXXXXXXXXXXXDHGRQVHARL 360
            +A++  +   G   EA G+  +MQ  +    +                   GR VH   
Sbjct: 360 SNAILNGFAANGMFEEAFGILNQMQSVDKIQPDIATVVSITSICGDLSFSREGRAVHGYT 419

Query: 361 VRSEF-DQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEA 419
           VR E   + L V +++I MY KCG   +A+ +F     +D+V WNSMI+ +SQ+G   +A
Sbjct: 420 VRMEMQSRALEVINSVIDMYGKCGLTTQAELLFKTTTHRDLVSWNSMISAFSQNGFTHKA 479

Query: 420 LNVFRDMCLSGVPPDDISF---IGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYAC 476
            N+F+++ +S       S    + +L++C  S  +  G+    S+ C  Q          
Sbjct: 480 KNLFKEV-VSEYSCSKFSLSTVLAILTSCDSSDSLIFGK----SVHCWLQ---------- 524

Query: 477 MVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRT 515
                 + G +  A   +E M    D   W S++  C +
Sbjct: 525 ------KLGDLTSAFLRLETMSETRDLTSWNSVISGCAS 557



 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/286 (20%), Positives = 123/286 (43%), Gaps = 12/286 (4%)

Query: 224 VARKLFEVMPERNEVSWTAMLM---GYTHSGRMREASEF--------FDAMPVKPVVACN 272
           +   LF+ +PER   +  +  M       S  MR  +E              ++ +   +
Sbjct: 67  IVHNLFDELPERENRTMESSFMFLRDVLRSFMMRTETETPRSVHCFALKCGLLQDLATSS 126

Query: 273 EMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAAL 332
           +++  +G  G++  +  +F++++E+D   W++MI    + G  + A+GLF  M  +G   
Sbjct: 127 KLLTFYGRTGELVSSSCLFDELKEKDVIVWNSMITALNQNGRYIAAVGLFIEMIHKGNEF 186

Query: 333 NFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIF 392
           +                      +H   + +    D  + +AL+ +Y K  +L  A+ +F
Sbjct: 187 DSTTLLLAASALSSLHLSRKCSMLHCLAIETGLVGDSSLCNALMNLYAKGENLSSAECVF 246

Query: 393 NRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVK 452
                +D+V WN+++T    +G   ++L  F+ M  SG   D ++F  V+SACS   ++ 
Sbjct: 247 THMEHRDIVSWNTIMTKCLANGHPRKSLQYFKSMTGSGQEADTVTFSCVISACSSIEELT 306

Query: 453 EGREIFE-SMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKM 497
            G  +    +K  Y  E  +     ++ +  + G    A  + E++
Sbjct: 307 LGESLHGLVIKSGYSPEAHVSVGNSIISMYSKCGDTEAAETVFEEL 352


>AT2G25580.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:10888102-10889949 FORWARD
           LENGTH=615
          Length = 615

 Score =  215 bits (548), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 124/355 (34%), Positives = 185/355 (52%), Gaps = 12/355 (3%)

Query: 353 GRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQ 412
            + VH ++  S    DL     L+ MY  CG    A  +F +   K++  W  +I  +++
Sbjct: 273 AKTVHGKISASVSHLDLSSNHVLLEMYSNCGLANEAASVFEKMSEKNLETWCIIIRCFAK 332

Query: 413 HGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIE 472
           +G GE+A+++F      G  PD   F G+  AC   G V EG   FESM   Y + P IE
Sbjct: 333 NGFGEDAIDMFSRFKEEGNIPDGQLFRGIFYACGMLGDVDEGLLHFESMSRDYGIAPSIE 392

Query: 473 HYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQL 532
            Y  +V++    G +++A+E VE+MPMEP+  VW +L+   R H  L+L +   E +  L
Sbjct: 393 DYVSLVEMYALPGFLDEALEFVERMPMEPNVDVWETLMNLSRVHGNLELGDYCAEVVEFL 452

Query: 533 EPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNN 592
           +P           +     +  DVE  +E +K RS I L G     V+     F  GD N
Sbjct: 453 DPTRLNKQSREGFIPV---KASDVE--KESLKKRSGI-LHG-----VKSSMQEFRAGDTN 501

Query: 593 CHPEQPIIMKMLERLDGLLRDAGYSPDHSFVLHDVEEEEKTHSLGYHSEKLAIAYGLLKV 652
             PE   + ++L  L   + + GY  +    LHD+++E K   L  HSE++A A  +L  
Sbjct: 502 L-PENDELFQLLRNLKMHMVEVGYVAETRMALHDIDQESKETLLLGHSERIAFARAVLNS 560

Query: 653 PEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIIVRDANRFHHFKDGYCSCKDYW 707
               P  V+KNLRVC DCH+A+K+++ + GRE+I RD  RFH  K+G C+CKDYW
Sbjct: 561 APRKPFTVIKNLRVCVDCHNALKIMSDIVGREVITRDIKRFHQMKNGACTCKDYW 615


>AT1G26900.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:9319756-9321474 REVERSE
           LENGTH=572
          Length = 572

 Score =  213 bits (542), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 152/506 (30%), Positives = 240/506 (47%), Gaps = 37/506 (7%)

Query: 101 ARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVV----SWTVMLGGLLK 156
           A  +F+ +   N+  + +M+RGY      E A  +F ++  K +     S+   L    +
Sbjct: 78  ASSIFEHVSNTNLFMFNTMIRGYSISDEPERAFSVFNQLRAKGLTLDRFSFITTLKSCSR 137

Query: 157 DSRVEDARKLFDMMPVKDVVAVTNM----IGGYCEEGRLEEARALFDEMPKR-NVVTWTT 211
           +  V     L  +      +  T++    I  YC  G++ +AR +FDEMP+  + VT++T
Sbjct: 138 ELCVSIGEGLHGIALRSGFMVFTDLRNALIHFYCVCGKISDARKVFDEMPQSVDAVTFST 197

Query: 212 MVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPV-VA 270
           +++GY +  +  +A  LF +M +   V   + L+ +     +   S+  D    +   V 
Sbjct: 198 LMNGYLQVSKKALALDLFRIMRKSEVVVNVSTLLSF-----LSAISDLGDLSGAESAHVL 252

Query: 271 C------------NEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEA 318
           C              +I  +G  G +  A+ +F+    +D  TW+ MI  Y + G   E 
Sbjct: 253 CIKIGLDLDLHLITALIGMYGKTGGISSARRIFDCAIRKDVVTWNCMIDQYAKTGLLEEC 312

Query: 319 LGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITM 378
           + L  +M+ E    N                   GR V   L       D  + +AL+ M
Sbjct: 313 VWLLRQMKYEKMKPNSSTFVGLLSSCAYSEAAFVGRTVADLLEEERIALDAILGTALVDM 372

Query: 379 YVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDM----CLSGVPPD 434
           Y K G L +A  IFNR   KDV  W +MI+GY  HGL  EA+ +F  M    C   V P+
Sbjct: 373 YAKVGLLEKAVEIFNRMKDKDVKSWTAMISGYGAHGLAREAVTLFNKMEEENC--KVRPN 430

Query: 435 DISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIV 494
           +I+F+ VL+ACS+ G V EG   F+ M   Y   P +EHY C+VDLLGRAGQ+ +A E++
Sbjct: 431 EITFLVVLNACSHGGLVMEGIRCFKRMVEAYSFTPKVEHYGCVVDLLGRAGQLEEAYELI 490

Query: 495 EKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWE 554
             +P+  D+  W +LL ACR +   DL E  + +LA++   +    +LL+  +A  G  E
Sbjct: 491 RNLPITSDSTAWRALLAACRVYGNADLGESVMMRLAEMGETHPADAILLAGTHAVAGNPE 550

Query: 555 DVEVVREKIKTRSVIKLPGYSWIEVE 580
              +  E  K R   K  GYS IE+E
Sbjct: 551 K-SLDNELNKGR---KEAGYSAIEIE 572



 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 122/292 (41%), Gaps = 54/292 (18%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIV- 83
           I  Y   G+I +ARKVFDE P       +++ ++  Y Q  +   A+ LF    +  +V 
Sbjct: 167 IHFYCVCGKISDARKVFDEMPQ-SVDAVTFSTLMNGYLQVSKKALALDLFRIMRKSEVVV 225

Query: 84  ------------SWNGMVSG--------------------------FVKNGMVAEARRVF 105
                       S  G +SG                          + K G ++ ARR+F
Sbjct: 226 NVSTLLSFLSAISDLGDLSGAESAHVLCIKIGLDLDLHLITALIGMYGKTGGISSARRIF 285

Query: 106 DAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDA-- 163
           D    ++VV+W  M+  Y + G +EE   L  +M  + +   +    GLL      +A  
Sbjct: 286 DCAIRKDVVTWNCMIDQYAKTGLLEECVWLLRQMKYEKMKPNSSTFVGLLSSCAYSEAAF 345

Query: 164 --RKLFDMMP----VKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYA 217
             R + D++       D +  T ++  Y + G LE+A  +F+ M  ++V +WT M+SGY 
Sbjct: 346 VGRTVADLLEEERIALDAILGTALVDMYAKVGLLEKAVEIFNRMKDKDVKSWTAMISGYG 405

Query: 218 RNRRVDVARKLFEVMPER------NEVSWTAMLMGYTHSGRMREASEFFDAM 263
            +     A  LF  M E       NE+++  +L   +H G + E    F  M
Sbjct: 406 AHGLAREAVTLFNKMEEENCKVRPNEITFLVVLNACSHGGLVMEGIRCFKRM 457



 Score = 84.0 bits (206), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 126/266 (47%), Gaps = 29/266 (10%)

Query: 86  NGMVSGFVKNGMVAEARRVFDAMPVR-NVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV 144
           N ++  +   G +++AR+VFD MP   + V++++++ GY+Q      A  LF  M +  V
Sbjct: 164 NALIHFYCVCGKISDARKVFDEMPQSVDAVTFSTLMNGYLQVSKKALALDLFRIMRKSEV 223

Query: 145 V-------SWTVMLGGLLKDSRVEDARKLFDMMPVK-DVVAVTNMIGGYCEEGRLEEARA 196
           V       S+   +  L   S  E A  L   + +  D+  +T +IG Y + G +  AR 
Sbjct: 224 VVNVSTLLSFLSAISDLGDLSGAESAHVLCIKIGLDLDLHLITALIGMYGKTGGISSARR 283

Query: 197 LFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMP----ERNEVSWTAML-------- 244
           +FD   +++VVTW  M+  YA+   ++    L   M     + N  ++  +L        
Sbjct: 284 IFDCAIRKDVVTWNCMIDQYAKTGLLEECVWLLRQMKYEKMKPNSSTFVGLLSSCAYSEA 343

Query: 245 --MGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTW 302
             +G T +  + E     DA+    +V   +M    G    +++A  +F +M+++D  +W
Sbjct: 344 AFVGRTVADLLEEERIALDAILGTALV---DMYAKVGL---LEKAVEIFNRMKDKDVKSW 397

Query: 303 SAMIKVYERKGFELEALGLFARMQRE 328
           +AMI  Y   G   EA+ LF +M+ E
Sbjct: 398 TAMISGYGAHGLAREAVTLFNKMEEE 423



 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 85/179 (47%), Gaps = 16/179 (8%)

Query: 355 QVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHG 414
           ++H  +V++  D+D +  S L+  +    D+  A  IF      ++ M+N+MI GYS   
Sbjct: 46  RIHGYMVKTGLDKDDFAVSKLLA-FSSVLDIRYASSIFEHVSNTNLFMFNTMIRGYSISD 104

Query: 415 LGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFE-SMKCKYQV----EP 469
             E A +VF  +   G+  D  SFI  L +CS    V  G  +   +++  + V      
Sbjct: 105 EPERAFSVFNQLRAKGLTLDRFSFITTLKSCSRELCVSIGEGLHGIALRSGFMVFTDLRN 164

Query: 470 GIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSL----LGACRTHMKLDLAEV 524
            + H+ C+       G+++DA ++ ++MP   DA+ + +L    L   +  + LDL  +
Sbjct: 165 ALIHFYCV------CGKISDARKVFDEMPQSVDAVTFSTLMNGYLQVSKKALALDLFRI 217



 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 113/266 (42%), Gaps = 6/266 (2%)

Query: 275 IMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNF 334
           ++ F    D+  A ++FE +   +   ++ MI+ Y        A  +F +++ +G  L+ 
Sbjct: 66  LLAFSSVLDIRYASSIFEHVSNTNLFMFNTMIRGYSISDEPERAFSVFNQLRAKGLTLDR 125

Query: 335 PXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNR 394
                             G  +H   +RS F     + +ALI  Y  CG +  A+ +F+ 
Sbjct: 126 FSFITTLKSCSRELCVSIGEGLHGIALRSGFMVFTDLRNALIHFYCVCGKISDARKVFDE 185

Query: 395 YPLK-DVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKE 453
            P   D V +++++ GY Q      AL++FR M  S V  +  + +  LSA S  G +  
Sbjct: 186 MPQSVDAVTFSTLMNGYLQVSKKALALDLFRIMRKSEVVVNVSTLLSFLSAISDLGDLS- 244

Query: 454 GREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGAC 513
           G E    +  K  ++  +     ++ + G+ G ++ A  I +   +  D + W  ++   
Sbjct: 245 GAESAHVLCIKIGLDLDLHLITALIGMYGKTGGISSARRIFD-CAIRKDVVTWNCMID-- 301

Query: 514 RTHMKLDLAEVAVEKLAQLEPKNAGP 539
             + K  L E  V  L Q++ +   P
Sbjct: 302 -QYAKTGLLEECVWLLRQMKYEKMKP 326



 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 113/284 (39%), Gaps = 60/284 (21%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAY-----------------FQA 64
           T  I  Y + G I +AR++FD    I +   +WN M+  Y                 ++ 
Sbjct: 266 TALIGMYGKTGGISSARRIFD--CAIRKDVVTWNCMIDQYAKTGLLEECVWLLRQMKYEK 323

Query: 65  HQPHQAV------------------TLFETTPEKNI----VSWNGMVSGFVKNGMVAEAR 102
            +P+ +                   T+ +   E+ I    +    +V  + K G++ +A 
Sbjct: 324 MKPNSSTFVGLLSSCAYSEAAFVGRTVADLLEEERIALDAILGTALVDMYAKVGLLEKAV 383

Query: 103 RVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV------VSWTVMLGGLLK 156
            +F+ M  ++V SWT+M+ GY   G   EA  LF +M E+N       +++ V+L     
Sbjct: 384 EIFNRMKDKDVKSWTAMISGYGAHGLAREAVTLFNKMEEENCKVRPNEITFLVVLNACSH 443

Query: 157 DSRVEDARKLFDMM--------PVKDVVAVTNMIGGYCEEGRLEEARALFDEMP-KRNVV 207
              V +  + F  M         V+    V +++G     G+LEEA  L   +P   +  
Sbjct: 444 GGLVMEGIRCFKRMVEAYSFTPKVEHYGCVVDLLG---RAGQLEEAYELIRNLPITSDST 500

Query: 208 TWTTMVSGYARNRRVDVARKLFEVMPERNEVS-WTAMLMGYTHS 250
            W  +++        D+   +   + E  E     A+L+  TH+
Sbjct: 501 AWRALLAACRVYGNADLGESVMMRLAEMGETHPADAILLAGTHA 544



 Score = 60.1 bits (144), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 110/264 (41%), Gaps = 24/264 (9%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVV 114
            A++  Y +      A  +F+    K++V+WN M+  + K G++ E   +   M    + 
Sbjct: 266 TALIGMYGKTGGISSARRIFDCAIRKDVVTWNCMIDQYAKTGLLEECVWLLRQMKYEKMK 325

Query: 115 SWTSMVRGYVQEGNVEEAE---RLFWRMPEKNVVSWTVMLGGLLKD-----SRVEDARKL 166
             +S   G +      EA    R    + E+  ++   +LG  L D       +E A ++
Sbjct: 326 PNSSTFVGLLSSCAYSEAAFVGRTVADLLEEERIALDAILGTALVDMYAKVGLLEKAVEI 385

Query: 167 FDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNV------VTWTTMVSGYARNR 220
           F+ M  KDV + T MI GY   G   EA  LF++M + N       +T+  +++  +   
Sbjct: 386 FNRMKDKDVKSWTAMISGYGAHGLAREAVTLFNKMEEENCKVRPNEITFLVVLNACSHGG 445

Query: 221 RVDVARKLFEVM-------PERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKP-VVACN 272
            V    + F+ M       P+         L+G   +G++ EA E    +P+     A  
Sbjct: 446 LVMEGIRCFKRMVEAYSFTPKVEHYGCVVDLLG--RAGQLEEAYELIRNLPITSDSTAWR 503

Query: 273 EMIMGFGFDGDVDRAKAVFEKMRE 296
            ++      G+ D  ++V  ++ E
Sbjct: 504 ALLAACRVYGNADLGESVMMRLAE 527


>AT3G49740.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:18447788-18450001 FORWARD
           LENGTH=737
          Length = 737

 Score =  211 bits (538), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 173/650 (26%), Positives = 292/650 (44%), Gaps = 98/650 (15%)

Query: 21  STGAISRYARIGQIENARKVFDET--PHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTP 78
           S   +S Y R+G + + +K FDE   P ++    SW  +++A F+      A  +F+  P
Sbjct: 95  SNTLLSLYERLGNLASLKKKFDEIDEPDVY----SWTTLLSASFKLGDIEYAFEVFDKMP 150

Query: 79  EKNIVS-WNGMVSGFVKNGMVAEARRVFDAM-------------PVRNVVSWTSMVRG-- 122
           E++ V+ WN M++G  ++G    +  +F  M              + ++  + S+  G  
Sbjct: 151 ERDDVAIWNAMITGCKESGYHETSVELFREMHKLGVRHDKFGFATILSMCDYGSLDFGKQ 210

Query: 123 ----------YVQEGNVEEAERLFWR---------------MPEKNVVSWTVMLGGLLKD 157
                     ++    V     +++                +  ++ V++ V++ GL   
Sbjct: 211 VHSLVIKAGFFIASSVVNALITMYFNCQVVVDACLVFEETDVAVRDQVTFNVVIDGLAGF 270

Query: 158 SRVEDA---RKLFDM-MPVKDVVAVTNMIGGYCEE-GRLEEARALFDEMPKRNVVTWTTM 212
            R E     RK+ +  +   D+  V+ M    C   G      A+     K  +V+  TM
Sbjct: 271 KRDESLLVFRKMLEASLRPTDLTFVSVMGSCSCAAMGHQVHGLAIKTGYEKYTLVSNATM 330

Query: 213 VSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAM---PVKP-- 267
            + Y+       A K+FE + E++ V+W  M+  Y  +   + A   +  M    VKP  
Sbjct: 331 -TMYSSFEDFGAAHKVFESLEEKDLVTWNTMISSYNQAKLGKSAMSVYKRMHIIGVKPDE 389

Query: 268 ------------------VVAC-------------NEMIMGFGFDGDVDRAKAVFEKMRE 296
                             V AC             N +I  +  +G +++A  +FE+   
Sbjct: 390 FTFGSLLATSLDLDVLEMVQACIIKFGLSSKIEISNALISAYSKNGQIEKADLLFERSLR 449

Query: 297 RDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDH---G 353
           ++  +W+A+I  +   GF  E L  F+ +  E      P                    G
Sbjct: 450 KNLISWNAIISGFYHNGFPFEGLERFSCL-LESEVRILPDAYTLSTLLSICVSTSSLMLG 508

Query: 354 RQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQH 413
            Q HA ++R    ++  + +ALI MY +CG +  +  +FN+   KDVV WNS+I+ YS+H
Sbjct: 509 SQTHAYVLRHGQFKETLIGNALINMYSQCGTIQNSLEVFNQMSEKDVVSWNSLISAYSRH 568

Query: 414 GLGEEALNVFRDMCLSG-VPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIE 472
           G GE A+N ++ M   G V PD  +F  VLSACS++G V+EG EIF SM   + V   ++
Sbjct: 569 GEGENAVNTYKTMQDEGKVIPDAATFSAVLSACSHAGLVEEGLEIFNSMVEFHGVIRNVD 628

Query: 473 HYACMVDLLGRAGQVNDA---VEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKL 529
           H++C+VDLLGRAG +++A   V+I EK  +     VW +L  AC  H  L L ++  + L
Sbjct: 629 HFSCLVDLLGRAGHLDEAESLVKISEK-TIGSRVDVWWALFSACAAHGDLKLGKMVAKLL 687

Query: 530 AQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEV 579
            + E  +   YV LS++YA  G W++ E  R  I     +K  G SW+ +
Sbjct: 688 MEKEKDDPSVYVQLSNIYAGAGMWKEAEETRRAINMIGAMKQRGCSWMRL 737


>AT1G14470.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:4954080-4955702 FORWARD
           LENGTH=540
          Length = 540

 Score =  210 bits (534), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 144/438 (32%), Positives = 215/438 (49%), Gaps = 80/438 (18%)

Query: 86  NGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVV 145
           N ++  +VK+  V  AR+VFD +  R    W  M+ GY + GN EEA +LF  MPE +VV
Sbjct: 140 NVIMDMYVKHESVESARKVFDQISQRKGSDWNVMISGYWKWGNKEEACKLFDMMPENDVV 199

Query: 146 SWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRN 205
           SWTVM+ G  K   +E+ARK FD MP K VV+   M+ GY + G  E+A  LF++M +  
Sbjct: 200 SWTVMITGFAKVKDLENARKYFDRMPEKSVVSWNAMLSGYAQNGFTEDALRLFNDMLRLG 259

Query: 206 V----VTWTTMVSG-----------------------------------YARNRRVDVAR 226
           V     TW  ++S                                    +A+ R +  AR
Sbjct: 260 VRPNETTWVIVISACSFRADPSLTRSLVKLIDEKRVRLNCFVKTALLDMHAKCRDIQSAR 319

Query: 227 KLF-EVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVD 285
           ++F E+  +RN V+W AM+ GYT  G M  A + FD MP + VV+ N +I G+  +G   
Sbjct: 320 RIFNELGTQRNLVTWNAMISGYTRIGDMSSARQLFDTMPKRNVVSWNSLIAGYAHNGQAA 379

Query: 286 RAKAVFEKMRERDDGTWS--AMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXX 343
            A   FE M +  D       MI V       L A G  A ++     +           
Sbjct: 380 LAIEFFEDMIDYGDSKPDEVTMISV-------LSACGHMADLELGDCIV----------- 421

Query: 344 XXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMW 403
                  D+ R+   +L  S +        +LI MY + G+L  AK +F+    +DVV +
Sbjct: 422 -------DYIRKNQIKLNDSGY-------RSLIFMYARGGNLWEAKRVFDEMKERDVVSY 467

Query: 404 NSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKC 463
           N++ T ++ +G G E LN+   M   G+ PD +++  VL+AC+ +G +KEG+ IF+S++ 
Sbjct: 468 NTLFTAFAANGDGVETLNLLSKMKDEGIEPDRVTYTSVLTACNRAGLLKEGQRIFKSIR- 526

Query: 464 KYQVEPGIEHYACMVDLL 481
                P  +HYACM DLL
Sbjct: 527 ----NPLADHYACM-DLL 539



 Score =  177 bits (448), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 110/351 (31%), Positives = 176/351 (50%), Gaps = 51/351 (14%)

Query: 28  YARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNG 87
           Y +   +E+ARKVFD+     R  S WN M++ Y++     +A  LF+  PE ++VSW  
Sbjct: 146 YVKHESVESARKVFDQISQ--RKGSDWNVMISGYWKWGNKEEACKLFDMMPENDVVSWTV 203

Query: 88  MVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM----PEKN 143
           M++GF K   +  AR+ FD MP ++VVSW +M+ GY Q G  E+A RLF  M       N
Sbjct: 204 MITGFAKVKDLENARKYFDRMPEKSVVSWNAMLSGYAQNGFTEDALRLFNDMLRLGVRPN 263

Query: 144 VVSWTVMLGGLLKDSRVEDARKLFDMMPVKDV----VAVTNMIGGYCEEGRLEEARALFD 199
             +W +++      +     R L  ++  K V       T ++  + +   ++ AR +F+
Sbjct: 264 ETTWVIVISACSFRADPSLTRSLVKLIDEKRVRLNCFVKTALLDMHAKCRDIQSARRIFN 323

Query: 200 EM-PKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASE 258
           E+  +RN+VTW  M+SGY R   +  AR+LF+ MP+RN VSW +++ GY H+G+   A E
Sbjct: 324 ELGTQRNLVTWNAMISGYTRIGDMSSARQLFDTMPKRNVVSWNSLIAGYAHNGQAALAIE 383

Query: 259 FFDAM----PVKP--------VVACNEM----------------------------IMGF 278
           FF+ M      KP        + AC  M                            I  +
Sbjct: 384 FFEDMIDYGDSKPDEVTMISVLSACGHMADLELGDCIVDYIRKNQIKLNDSGYRSLIFMY 443

Query: 279 GFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREG 329
              G++  AK VF++M+ERD  +++ +   +   G  +E L L ++M+ EG
Sbjct: 444 ARGGNLWEAKRVFDEMKERDVVSYNTLFTAFAANGDGVETLNLLSKMKDEG 494



 Score =  146 bits (368), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 118/468 (25%), Positives = 213/468 (45%), Gaps = 33/468 (7%)

Query: 63  QAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAE--ARRVFDAMPVRNVVSWTSMV 120
           Q +Q H  + +F + P ++   W   +              R +FD++   NV    SM 
Sbjct: 21  QLNQIHAQLIVFNSLPRQSY--WASRIISCCTRLRAPSYYTRLIFDSVTFPNVFVVNSMF 78

Query: 121 RGYVQEGNVEEAERLFWR------MPEKNVVSWTVMLG-----GLLKDSRVEDARKLFDM 169
           + + +     +  RL+ +      MP+    S+ V++      G+L  + VE     F  
Sbjct: 79  KYFSKMDMANDVLRLYEQRSRCGIMPD--AFSFPVVIKSAGRFGILFQALVEKL-GFFKD 135

Query: 170 MPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLF 229
             V++V+     +  Y +   +E AR +FD++ +R    W  M+SGY +    + A KLF
Sbjct: 136 PYVRNVI-----MDMYVKHESVESARKVFDQISQRKGSDWNVMISGYWKWGNKEEACKLF 190

Query: 230 EVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKA 289
           ++MPE + VSWT M+ G+     +  A ++FD MP K VV+ N M+ G+  +G  + A  
Sbjct: 191 DMMPENDVVSWTVMITGFAKVKDLENARKYFDRMPEKSVVSWNAMLSGYAQNGFTEDALR 250

Query: 290 VFEKMRER----DDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXX 345
           +F  M       ++ TW  +I     +        L   +  +   LN            
Sbjct: 251 LFNDMLRLGVRPNETTWVIVISACSFRADPSLTRSLVKLIDEKRVRLNCFVKTALLDMHA 310

Query: 346 XXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNS 405
                   R++   L      ++L   +A+I+ Y + GD+  A+ +F+  P ++VV WNS
Sbjct: 311 KCRDIQSARRIFNELGTQ---RNLVTWNAMISGYTRIGDMSSARQLFDTMPKRNVVSWNS 367

Query: 406 MITGYSQHGLGEEALNVFRDMCLSG-VPPDDISFIGVLSACSYSGKVKEGREIFESMKCK 464
           +I GY+ +G    A+  F DM   G   PD+++ I VLSAC +   ++ G  I + ++ K
Sbjct: 368 LIAGYAHNGQAALAIEFFEDMIDYGDSKPDEVTMISVLSACGHMADLELGDCIVDYIR-K 426

Query: 465 YQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGA 512
            Q++     Y  ++ +  R G + +A  + ++M  E D + + +L  A
Sbjct: 427 NQIKLNDSGYRSLIFMYARGGNLWEAKRVFDEMK-ERDVVSYNTLFTA 473



 Score =  102 bits (255), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 149/340 (43%), Gaps = 88/340 (25%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETT---- 77
           T  I+ +A++  +ENARK FD  P   ++  SWNAM++ Y Q      A+ LF       
Sbjct: 202 TVMITGFAKVKDLENARKYFDRMP--EKSVVSWNAMLSGYAQNGFTEDALRLFNDMLRLG 259

Query: 78  PEKNIVSWNGMVSG--------------------------FVKNGM---------VAEAR 102
              N  +W  ++S                           FVK  +         +  AR
Sbjct: 260 VRPNETTWVIVISACSFRADPSLTRSLVKLIDEKRVRLNCFVKTALLDMHAKCRDIQSAR 319

Query: 103 RVFDAMPV-RNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVE 161
           R+F+ +   RN+V+W +M+ GY + G++  A +LF  MP++NVVSW  ++ G   + +  
Sbjct: 320 RIFNELGTQRNLVTWNAMISGYTRIGDMSSARQLFDTMPKRNVVSWNSLIAGYAHNGQAA 379

Query: 162 DARKLF-DMMPVKD-------VVAVTNMIGG----------------------------- 184
            A + F DM+   D       +++V +  G                              
Sbjct: 380 LAIEFFEDMIDYGDSKPDEVTMISVLSACGHMADLELGDCIVDYIRKNQIKLNDSGYRSL 439

Query: 185 ---YCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARN----RRVDVARKLFEVMPERNE 237
              Y   G L EA+ +FDEM +R+VV++ T+ + +A N      +++  K+ +   E + 
Sbjct: 440 IFMYARGGNLWEAKRVFDEMKERDVVSYNTLFTAFAANGDGVETLNLLSKMKDEGIEPDR 499

Query: 238 VSWTAMLMGYTHSGRMREASEFFDAM--PVKPVVACNEMI 275
           V++T++L     +G ++E    F ++  P+    AC +++
Sbjct: 500 VTYTSVLTACNRAGLLKEGQRIFKSIRNPLADHYACMDLL 539



 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 91/209 (43%), Gaps = 48/209 (22%)

Query: 20  TSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFE---- 75
           T    IS Y RIG + +AR++FD  P   R   SWN+++A Y    Q   A+  FE    
Sbjct: 333 TWNAMISGYTRIGDMSSARQLFDTMP--KRNVVSWNSLIAGYAHNGQAALAIEFFEDMID 390

Query: 76  ---TTPE----------------------------KNIVSWN-----GMVSGFVKNGMVA 99
              + P+                            KN +  N      ++  + + G + 
Sbjct: 391 YGDSKPDEVTMISVLSACGHMADLELGDCIVDYIRKNQIKLNDSGYRSLIFMYARGGNLW 450

Query: 100 EARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV----VSWTVMLGGLL 155
           EA+RVFD M  R+VVS+ ++   +   G+  E   L  +M ++ +    V++T +L    
Sbjct: 451 EAKRVFDEMKERDVVSYNTLFTAFAANGDGVETLNLLSKMKDEGIEPDRVTYTSVLTACN 510

Query: 156 KDSRVEDARKLFDMM--PVKDVVAVTNMI 182
           +   +++ +++F  +  P+ D  A  +++
Sbjct: 511 RAGLLKEGQRIFKSIRNPLADHYACMDLL 539


>AT2G46050.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr2:18939262-18941034 FORWARD
           LENGTH=590
          Length = 590

 Score =  209 bits (531), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 148/513 (28%), Positives = 247/513 (48%), Gaps = 23/513 (4%)

Query: 86  NGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQ-EGNVEEAERL----FWRMP 140
           N ++  + K     +A ++FD MP+RN+V+W  ++ G +Q +G+      L      R+ 
Sbjct: 75  NKLLQAYTKIREFDDADKLFDEMPLRNIVTWNILIHGVIQRDGDTNHRAHLGFCYLSRIL 134

Query: 141 EKNVVSWTVMLGGLLK---DSRVEDARKLFDMMPVK-----DVVAVTNMIGGYCEEGRLE 192
             +V    V   GL++   DS    A      + VK          T+++  Y + G + 
Sbjct: 135 FTDVSLDHVSFMGLIRLCTDSTNMKAGIQLHCLMVKQGLESSCFPSTSLVHFYGKCGLIV 194

Query: 193 EARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVM-PERNEV-----SWTAMLMG 246
           EAR +F+ +  R++V W  +VS Y  N  +D A  L ++M  ++N       +++++L  
Sbjct: 195 EARRVFEAVLDRDLVLWNALVSSYVLNGMIDEAFGLLKLMGSDKNRFRGDYFTFSSLLSA 254

Query: 247 -YTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAM 305
                G+   A  F  +      VA   + M +     +  A+  FE M  R+  +W+AM
Sbjct: 255 CRIEQGKQIHAILFKVSYQFDIPVATALLNM-YAKSNHLSDARECFESMVVRNVVSWNAM 313

Query: 306 IKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEF 365
           I  + + G   EA+ LF +M  E    +                    +QV A + +   
Sbjct: 314 IVGFAQNGEGREAMRLFGQMLLENLQPDELTFASVLSSCAKFSAIWEIKQVQAMVTKKGS 373

Query: 366 DQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRD 425
              L VA++LI+ Y + G+L  A   F+     D+V W S+I   + HG  EE+L +F  
Sbjct: 374 ADFLSVANSLISSYSRNGNLSEALLCFHSIREPDLVSWTSVIGALASHGFAEESLQMFES 433

Query: 426 MCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAG 485
           M L  + PD I+F+ VLSACS+ G V+EG   F+ M   Y++E   EHY C++DLLGRAG
Sbjct: 434 M-LQKLQPDKITFLEVLSACSHGGLVQEGLRCFKRMTEFYKIEAEDEHYTCLIDLLGRAG 492

Query: 486 QVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSH 545
            +++A +++  MP EP      +  G C  H K +  +   +KL ++EP     Y +LS+
Sbjct: 493 FIDEASDVLNSMPTEPSTHALAAFTGGCNIHEKRESMKWGAKKLLEIEPTKPVNYSILSN 552

Query: 546 MYASKGRWEDVEVVREKIKTRSVI-KLPGYSWI 577
            Y S+G W    ++R++ +      K PG SW+
Sbjct: 553 AYVSEGHWNQAALLRKRERRNCYNPKTPGCSWL 585



 Score =  103 bits (257), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 151/360 (41%), Gaps = 62/360 (17%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQ-----AHQPHQAVTLFE---- 75
           +  Y +I + ++A K+FDE P   R   +WN ++    Q      H+ H           
Sbjct: 78  LQAYTKIREFDDADKLFDEMP--LRNIVTWNILIHGVIQRDGDTNHRAHLGFCYLSRILF 135

Query: 76  TTPEKNIVSWNG-----------------------------------MVSGFVKNGMVAE 100
           T    + VS+ G                                   +V  + K G++ E
Sbjct: 136 TDVSLDHVSFMGLIRLCTDSTNMKAGIQLHCLMVKQGLESSCFPSTSLVHFYGKCGLIVE 195

Query: 101 ARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM-PEKNVVSWTVM-LGGLLKDS 158
           ARRVF+A+  R++V W ++V  YV  G ++EA  L   M  +KN           LL   
Sbjct: 196 ARRVFEAVLDRDLVLWNALVSSYVLNGMIDEAFGLLKLMGSDKNRFRGDYFTFSSLLSAC 255

Query: 159 RVEDARK----LFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVS 214
           R+E  ++    LF +    D+   T ++  Y +   L +AR  F+ M  RNVV+W  M+ 
Sbjct: 256 RIEQGKQIHAILFKVSYQFDIPVATALLNMYAKSNHLSDARECFESMVVRNVVSWNAMIV 315

Query: 215 GYARNRRVDVARKLFEVMPERN----EVSWTAMLMGYTHSGRMREASEFFDAMPVKP--- 267
           G+A+N     A +LF  M   N    E+++ ++L        + E  +   AM  K    
Sbjct: 316 GFAQNGEGREAMRLFGQMLLENLQPDELTFASVLSSCAKFSAIWEIKQ-VQAMVTKKGSA 374

Query: 268 --VVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARM 325
             +   N +I  +  +G++  A   F  +RE D  +W+++I      GF  E+L +F  M
Sbjct: 375 DFLSVANSLISSYSRNGNLSEALLCFHSIREPDLVSWTSVIGALASHGFAEESLQMFESM 434



 Score = 96.3 bits (238), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 149/331 (45%), Gaps = 63/331 (19%)

Query: 21  STGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYF------------------ 62
           ST  +  Y + G I  AR+VF+    + R    WNA+V++Y                   
Sbjct: 180 STSLVHFYGKCGLIVEARRVFEAV--LDRDLVLWNALVSSYVLNGMIDEAFGLLKLMGSD 237

Query: 63  ---------------------QAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEA 101
                                Q  Q H    LF+ + + +I     +++ + K+  +++A
Sbjct: 238 KNRFRGDYFTFSSLLSACRIEQGKQIH--AILFKVSYQFDIPVATALLNMYAKSNHLSDA 295

Query: 102 RRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV----VSWTVMLGGLLKD 157
           R  F++M VRNVVSW +M+ G+ Q G   EA RLF +M  +N+    +++  +L    K 
Sbjct: 296 RECFESMVVRNVVSWNAMIVGFAQNGEGREAMRLFGQMLLENLQPDELTFASVLSSCAKF 355

Query: 158 SRVEDARKLFDMMPVK---DVVAVTN-MIGGYCEEGRLEEARALFDEMPKRNVVTWTTMV 213
           S + + +++  M+  K   D ++V N +I  Y   G L EA   F  + + ++V+WT+++
Sbjct: 356 SAIWEIKQVQAMVTKKGSADFLSVANSLISSYSRNGNLSEALLCFHSIREPDLVSWTSVI 415

Query: 214 SGYARNRRVDVARKLFEVMPER---NEVSWTAMLMGYTHSGRMREA-------SEFFDAM 263
              A +   + + ++FE M ++   +++++  +L   +H G ++E        +EF+   
Sbjct: 416 GALASHGFAEESLQMFESMLQKLQPDKITFLEVLSACSHGGLVQEGLRCFKRMTEFYKIE 475

Query: 264 PVKPVVACNEMIMGFGFDGDVDRAKAVFEKM 294
                  C  +I   G  G +D A  V   M
Sbjct: 476 AEDEHYTC--LIDLLGRAGFIDEASDVLNSM 504



 Score = 73.6 bits (179), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/298 (21%), Positives = 126/298 (42%), Gaps = 26/298 (8%)

Query: 21  STGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEK 80
           +T  ++ YA+   + +AR+ F+    + R   SWNAM+  + Q  +  +A+ LF     +
Sbjct: 279 ATALLNMYAKSNHLSDARECFESM--VVRNVVSWNAMIVGFAQNGEGREAMRLFGQMLLE 336

Query: 81  NI----VSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSW----TSMVRGYVQEGNVEEA 132
           N+    +++  ++S   K   + E ++V   +  +    +     S++  Y + GN+ EA
Sbjct: 337 NLQPDELTFASVLSSCAKFSAIWEIKQVQAMVTKKGSADFLSVANSLISSYSRNGNLSEA 396

Query: 133 ERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVK---DVVAVTNMIGGYCEEG 189
              F  + E ++VSWT ++G L      E++ ++F+ M  K   D +    ++      G
Sbjct: 397 LLCFHSIREPDLVSWTSVIGALASHGFAEESLQMFESMLQKLQPDKITFLEVLSACSHGG 456

Query: 190 RLEEARALFDEMPKRNVVT-----WTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAML 244
            ++E    F  M +   +      +T ++    R   +D A  +   MP        A  
Sbjct: 457 LVQEGLRCFKRMTEFYKIEAEDEHYTCLIDLLGRAGFIDEASDVLNSMPTEPSTHALAAF 516

Query: 245 MGYTHSGRMRE-----ASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRER 297
            G  +    RE     A +  +  P KPV   N  I+   +  +    +A   + RER
Sbjct: 517 TGGCNIHEKRESMKWGAKKLLEIEPTKPV---NYSILSNAYVSEGHWNQAALLRKRER 571



 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 92/202 (45%), Gaps = 9/202 (4%)

Query: 354 RQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQH 413
           +Q H  +V+      L++ + L+  Y K  +   A  +F+  PL+++V WN +I G  Q 
Sbjct: 56  KQEHGFMVKQGIYNSLFLQNKLLQAYTKIREFDDADKLFDEMPLRNIVTWNILIHGVIQR 115

Query: 414 GLGEEALNVFRDMC------LSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQV 467
             G+         C       + V  D +SF+G++  C+ S  +K G ++   +  K  +
Sbjct: 116 D-GDTNHRAHLGFCYLSRILFTDVSLDHVSFMGLIRLCTDSTNMKAGIQL-HCLMVKQGL 173

Query: 468 EPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVE 527
           E        +V   G+ G + +A  + E + ++ D ++W +L+ +   +  +D A   ++
Sbjct: 174 ESSCFPSTSLVHFYGKCGLIVEARRVFEAV-LDRDLVLWNALVSSYVLNGMIDEAFGLLK 232

Query: 528 KLAQLEPKNAGPYVLLSHMYAS 549
            +   + +  G Y   S + ++
Sbjct: 233 LMGSDKNRFRGDYFTFSSLLSA 254


>AT4G25270.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:12937253-12938836 REVERSE
           LENGTH=527
          Length = 527

 Score =  207 bits (526), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 131/401 (32%), Positives = 209/401 (52%), Gaps = 17/401 (4%)

Query: 179 TNMIGGYCEEGRLEEARALFDEMPKRNV--VTWTTMVSGYARNRRVDVARKLF------E 230
           + ++  Y   G  E A  +FD M KR+     W +++SGYA   + + A  L+       
Sbjct: 131 SKLVRLYASCGYAEVAHEVFDRMSKRDSSPFAWNSLISGYAELGQYEDAMALYFQMAEDG 190

Query: 231 VMPERNEVSWTAMLMGYTHSGRMREA--SEFFDAMPVKPVVACNEMIMGFGFDGDVDRAK 288
           V P+R          G   S ++ EA   +         V   N +++ +   GD+ +A+
Sbjct: 191 VKPDRFTFPRVLKACGGIGSVQIGEAIHRDLVKEGFGYDVYVLNALVVMYAKCGDIVKAR 250

Query: 289 AVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXX 348
            VF+ +  +D  +W++M+  Y   G   EAL +F  M + G     P             
Sbjct: 251 NVFDMIPHKDYVSWNSMLTGYLHHGLLHEALDIFRLMVQNGIE---PDKVAISSVLARVL 307

Query: 349 XXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMIT 408
              HGRQ+H  ++R   + +L VA+ALI +Y K G L +A +IF++   +D V WN++I+
Sbjct: 308 SFKHGRQLHGWVIRRGMEWELSVANALIVLYSKRGQLGQACFIFDQMLERDTVSWNAIIS 367

Query: 409 GYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVE 468
            +S++  G   L  F  M  +   PD I+F+ VLS C+ +G V++G  +F  M  +Y ++
Sbjct: 368 AHSKNSNG---LKYFEQMHRANAKPDGITFVSVLSLCANTGMVEDGERLFSLMSKEYGID 424

Query: 469 PGIEHYACMVDLLGRAGQVNDAVE-IVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVE 527
           P +EHYACMV+L GRAG + +A   IV++M +E    VWG+LL AC  H   D+ EVA +
Sbjct: 425 PKMEHYACMVNLYGRAGMMEEAYSMIVQEMGLEAGPTVWGALLYACYLHGNTDIGEVAAQ 484

Query: 528 KLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSV 568
           +L +LEP N   + LL  +Y+   R EDVE VR+ +  R +
Sbjct: 485 RLFELEPDNEHNFELLIRIYSKAKRAEDVERVRQMMVDRGL 525



 Score = 80.9 bits (198), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 147/345 (42%), Gaps = 66/345 (19%)

Query: 21  STGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEK 80
           S+  +  YA  G  E A +VFD       +  +WN++++ Y +  Q   A+ L+    E 
Sbjct: 130 SSKLVRLYASCGYAEVAHEVFDRMSKRDSSPFAWNSLISGYAELGQYEDAMALYFQMAED 189

Query: 81  ---------------------------------------NIVSWNGMVSGFVKNGMVAEA 101
                                                  ++   N +V  + K G + +A
Sbjct: 190 GVKPDRFTFPRVLKACGGIGSVQIGEAIHRDLVKEGFGYDVYVLNALVVMYAKCGDIVKA 249

Query: 102 RRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRV- 160
           R VFD +P ++ VSW SM+ GY+  G + EA  +F  M +  +    V +  +L  +RV 
Sbjct: 250 RNVFDMIPHKDYVSWNSMLTGYLHHGLLHEALDIFRLMVQNGIEPDKVAISSVL--ARVL 307

Query: 161 --EDARKLFDMMPVKDV---VAVTN-MIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVS 214
             +  R+L   +  + +   ++V N +I  Y + G+L +A  +FD+M +R+ V+W  ++S
Sbjct: 308 SFKHGRQLHGWVIRRGMEWELSVANALIVLYSKRGQLGQACFIFDQMLERDTVSWNAIIS 367

Query: 215 GYARNRRVDVARKLFEVMPERNE----VSWTAMLMGYTHSGRMREASEFFDAM------- 263
            +++N       K FE M   N     +++ ++L    ++G + +    F  M       
Sbjct: 368 AHSKNSN---GLKYFEQMHRANAKPDGITFVSVLSLCANTGMVEDGERLFSLMSKEYGID 424

Query: 264 PVKPVVACNEMIMGFGFDGDVDRAKA--VFEKMRERDDGTWSAMI 306
           P     AC  M+  +G  G ++ A +  V E   E     W A++
Sbjct: 425 PKMEHYAC--MVNLYGRAGMMEEAYSMIVQEMGLEAGPTVWGALL 467



 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 121/260 (46%), Gaps = 22/260 (8%)

Query: 88  MVSGFVKNGMVAEARRVFDAMPVRNV--VSWTSMVRGYVQEGNVEEAERLFWRMPEKNVV 145
           +V  +   G    A  VFD M  R+    +W S++ GY + G  E+A  L+++M E  V 
Sbjct: 133 LVRLYASCGYAEVAHEVFDRMSKRDSSPFAWNSLISGYAELGQYEDAMALYFQMAEDGVK 192

Query: 146 SWTVMLGGLLK------DSRVEDA--RKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARAL 197
                   +LK        ++ +A  R L       DV  +  ++  Y + G + +AR +
Sbjct: 193 PDRFTFPRVLKACGGIGSVQIGEAIHRDLVKEGFGYDVYVLNALVVMYAKCGDIVKARNV 252

Query: 198 FDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVM------PERNEVSWT-AMLMGYTHS 250
           FD +P ++ V+W +M++GY  +  +  A  +F +M      P++  +S   A ++ + H 
Sbjct: 253 FDMIPHKDYVSWNSMLTGYLHHGLLHEALDIFRLMVQNGIEPDKVAISSVLARVLSFKH- 311

Query: 251 GRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYE 310
           GR          M  +  VA N +I+ +   G + +A  +F++M ERD  +W+A+I  + 
Sbjct: 312 GRQLHGWVIRRGMEWELSVA-NALIVLYSKRGQLGQACFIFDQMLERDTVSWNAIISAHS 370

Query: 311 RKGFELEALGLFARMQREGA 330
           +       L  F +M R  A
Sbjct: 371 KNS---NGLKYFEQMHRANA 387



 Score = 72.8 bits (177), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 81/172 (47%), Gaps = 12/172 (6%)

Query: 351 DHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDV--VMWNSMIT 408
           DHG +VH  +       +L ++S L+ +Y  CG    A  +F+R   +D     WNS+I+
Sbjct: 109 DHGVRVHHLIPPYLLRNNLGISSKLVRLYASCGYAEVAHEVFDRMSKRDSSPFAWNSLIS 168

Query: 409 GYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVE 468
           GY++ G  E+A+ ++  M   GV PD  +F  VL AC   G V+ G  I   +     V+
Sbjct: 169 GYAELGQYEDAMALYFQMAEDGVKPDRFTFPRVLKACGGIGSVQIGEAIHRDL-----VK 223

Query: 469 PGIEH----YACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTH 516
            G  +       +V +  + G +  A  + + +P   D + W S+L     H
Sbjct: 224 EGFGYDVYVLNALVVMYAKCGDIVKARNVFDMIP-HKDYVSWNSMLTGYLHH 274


>AT5G61800.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:24830054-24831553 REVERSE
           LENGTH=499
          Length = 499

 Score =  206 bits (525), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 116/344 (33%), Positives = 179/344 (52%), Gaps = 5/344 (1%)

Query: 239 SWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERD 298
           +   ++  Y+    +  A + FD  P + VV  N +I G     ++ RA+ +F+ M  RD
Sbjct: 154 TLNTLIRVYSLIAPIDSALQLFDENPQRDVVTYNVLIDGLVKAREIVRARELFDSMPLRD 213

Query: 299 DGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHA 358
             +W+++I  Y +     EA+ LF  M   G   +                   G+ +H 
Sbjct: 214 LVSWNSLISGYAQMNHCREAIKLFDEMVALGLKPDNVAIVSTLSACAQSGDWQKGKAIHD 273

Query: 359 RLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEE 418
              R     D ++A+ L+  Y KCG +  A  IF     K +  WN+MITG + HG GE 
Sbjct: 274 YTKRKRLFIDSFLATGLVDFYAKCGFIDTAMEIFELCSDKTLFTWNAMITGLAMHGNGEL 333

Query: 419 ALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMV 478
            ++ FR M  SG+ PD ++FI VL  CS+SG V E R +F+ M+  Y V   ++HY CM 
Sbjct: 334 TVDYFRKMVSSGIKPDGVTFISVLVGCSHSGLVDEARNLFDQMRSLYDVNREMKHYGCMA 393

Query: 479 DLLGRAGQVNDAVEIVEKMPME----PDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEP 534
           DLLGRAG + +A E++E+MP +       + W  LLG CR H  +++AE A  ++  L P
Sbjct: 394 DLLGRAGLIEEAAEMIEQMPKDGGNREKLLAWSGLLGGCRIHGNIEIAEKAANRVKALSP 453

Query: 535 KNAGPYVLLSHMYASKGRWEDVEVVREKI-KTRSVIKLPGYSWI 577
           ++ G Y ++  MYA+  RWE+V  VRE I + + V K  G+S +
Sbjct: 454 EDGGVYKVMVEMYANAERWEEVVKVREIIDRDKKVKKNVGFSKV 497



 Score =  107 bits (267), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 137/290 (47%), Gaps = 40/290 (13%)

Query: 53  SWNAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRN 112
           + N ++  Y        A+ LF+  P++++V++N ++ G VK   +  AR +FD+MP+R+
Sbjct: 154 TLNTLIRVYSLIAPIDSALQLFDENPQRDVVTYNVLIDGLVKAREIVRARELFDSMPLRD 213

Query: 113 VVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPV 172
           +VSW S++ GY Q  +  EA +LF  M         V LG                + P 
Sbjct: 214 LVSWNSLISGYAQMNHCREAIKLFDEM---------VALG----------------LKP- 247

Query: 173 KDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSG----YARNRRVDVARKL 228
            D VA+ + +    + G  ++ +A+ D   ++ +   + + +G    YA+   +D A ++
Sbjct: 248 -DNVAIVSTLSACAQSGDWQKGKAIHDYTKRKRLFIDSFLATGLVDFYAKCGFIDTAMEI 306

Query: 229 FEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAM---PVKPV-VACNEMIMGFGFDGDV 284
           FE+  ++   +W AM+ G    G      ++F  M    +KP  V    +++G    G V
Sbjct: 307 FELCSDKTLFTWNAMITGLAMHGNGELTVDYFRKMVSSGIKPDGVTFISVLVGCSHSGLV 366

Query: 285 DRAKAVFEKMR-----ERDDGTWSAMIKVYERKGFELEALGLFARMQREG 329
           D A+ +F++MR      R+   +  M  +  R G   EA  +  +M ++G
Sbjct: 367 DEARNLFDQMRSLYDVNREMKHYGCMADLLGRAGLIEEAAEMIEQMPKDG 416



 Score = 85.1 bits (209), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 149/317 (47%), Gaps = 31/317 (9%)

Query: 20  TSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPE 79
           T    I  Y+ I  I++A ++FDE P   R   ++N ++    +A +  +A  LF++ P 
Sbjct: 154 TLNTLIRVYSLIAPIDSALQLFDENPQ--RDVVTYNVLIDGLVKAREIVRARELFDSMPL 211

Query: 80  KNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNV----VSWTSMVRGYVQEGNVEEAERL 135
           +++VSWN ++SG+ +     EA ++FD M    +    V+  S +    Q G+ ++ + +
Sbjct: 212 RDLVSWNSLISGYAQMNHCREAIKLFDEMVALGLKPDNVAIVSTLSACAQSGDWQKGKAI 271

Query: 136 FWRMPEKNVVSWTVMLGGLL----KDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRL 191
                 K +   + +  GL+    K   ++ A ++F++   K +     MI G    G  
Sbjct: 272 HDYTKRKRLFIDSFLATGLVDFYAKCGFIDTAMEIFELCSDKTLFTWNAMITGLAMHGNG 331

Query: 192 EEARALFDEMPKRNV----VTWTTMVSGYARNRRVDVARKLFEVMPERNEVS-------W 240
           E     F +M    +    VT+ +++ G + +  VD AR LF+ M    +V+        
Sbjct: 332 ELTVDYFRKMVSSGIKPDGVTFISVLVGCSHSGLVDEARNLFDQMRSLYDVNREMKHYGC 391

Query: 241 TAMLMGYTHSGRMREASEFFDAMPV-----KPVVACNEMIMGFGFDGDVDRAKAVFEKMR 295
            A L+G   +G + EA+E  + MP      + ++A + ++ G    G+++ A+    +++
Sbjct: 392 MADLLG--RAGLIEEAAEMIEQMPKDGGNREKLLAWSGLLGGCRIHGNIEIAEKAANRVK 449

Query: 296 E---RDDGTWSAMIKVY 309
                D G +  M+++Y
Sbjct: 450 ALSPEDGGVYKVMVEMY 466


>AT4G32450.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:15661092-15662705 FORWARD
           LENGTH=537
          Length = 537

 Score =  204 bits (519), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 124/397 (31%), Positives = 196/397 (49%), Gaps = 17/397 (4%)

Query: 311 RKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLY 370
           R+G   +A+ +    + EG  ++ P                  + VH  +  S    D+ 
Sbjct: 158 REGKVKKAVEIIKSWRNEGYVVDLPRLFWIAQLCGDAQALQEAKVVHEFITSSVGISDIS 217

Query: 371 VASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSG 430
             +++I MY  CG +  A  +FN  P +++  W  +I  ++++G GE+A++ F      G
Sbjct: 218 AYNSIIEMYSGCGSVEDALTVFNSMPERNLETWCGVIRCFAKNGQGEDAIDTFSRFKQEG 277

Query: 431 VPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDA 490
             PD   F  +  AC   G + EG   FESM  +Y + P +EHY  +V +L   G +++A
Sbjct: 278 NKPDGEMFKEIFFACGVLGDMNEGLLHFESMYKEYGIIPCMEHYVSLVKMLAEPGYLDEA 337

Query: 491 VEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASK 550
           +  VE M  EP+  +W +L+   R H  L L +   + + QL+        L     A  
Sbjct: 338 LRFVESM--EPNVDLWETLMNLSRVHGDLILGDRCQDMVEQLDASR-----LNKESKAGL 390

Query: 551 GRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGL 610
              +  ++V+EK++   + K P Y           ++   +   PE   +   L+ L   
Sbjct: 391 VPVKSSDLVKEKLQR--MAKGPNYGI--------RYMAAGDISRPENRELYMALKSLKEH 440

Query: 611 LRDAGYSPDHSFVLHDVEEEEKTHSLGYHSEKLAIAYGLLKVPEGMPIRVMKNLRVCGDC 670
           + + GY P     LHDV++E K  +L  H+E+ A     L  P    IRVMKNLRVC DC
Sbjct: 441 MIEIGYVPLSKLALHDVDQESKDENLFNHNERFAFISTFLDTPARSLIRVMKNLRVCADC 500

Query: 671 HSAIKLIAKVTGREIIVRDANRFHHFKDGYCSCKDYW 707
           H+A+KL++K+ GRE+I RDA RFHH KDG CSC++YW
Sbjct: 501 HNALKLMSKIVGRELISRDAKRFHHMKDGVCSCREYW 537



 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 81/175 (46%), Gaps = 18/175 (10%)

Query: 54  WNAMVAAYFQAHQPHQAVTLFETTPE--KNIVSWNGMVSGFVKNGMVAEARRVFDAMPVR 111
           W A +    QA Q  + V  F T+     +I ++N ++  +   G V +A  VF++MP R
Sbjct: 186 WIAQLCGDAQALQEAKVVHEFITSSVGISDISAYNSIIEMYSGCGSVEDALTVFNSMPER 245

Query: 112 NVVSWTSMVRGYVQEGNVEEAERLFWRM------PEKNVVSWTVMLGGLLKDSR-----V 160
           N+ +W  ++R + + G  E+A   F R       P+  +        G+L D        
Sbjct: 246 NLETWCGVIRCFAKNGQGEDAIDTFSRFKQEGNKPDGEMFKEIFFACGVLGDMNEGLLHF 305

Query: 161 EDARKLFDMMP-VKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVS 214
           E   K + ++P ++  V++  M+    E G L+EA    + M + NV  W T+++
Sbjct: 306 ESMYKEYGIIPCMEHYVSLVKMLA---EPGYLDEALRFVESM-EPNVDLWETLMN 356


>AT5G47460.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:19252463-19254193 REVERSE
           LENGTH=576
          Length = 576

 Score =  203 bits (516), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 145/560 (25%), Positives = 247/560 (44%), Gaps = 63/560 (11%)

Query: 84  SWNGMVSGFVKNGMVAEARRVF---------DAMPVRNVVSWTSMVRGYVQEGNVEEAER 134
           SW+ +V    + G +   R            DA P+        ++R     G V    +
Sbjct: 23  SWSTIVPALARFGSIGVLRAAVELINDGEKPDASPL------VHLLRVSGNYGYVSLCRQ 76

Query: 135 LFWRMPEKNVVSWTVMLGGLLK----DSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGR 190
           L   + +   VS T +   L++       +EDA K+FD MP  DV++  +++ GY + GR
Sbjct: 77  LHGYVTKHGFVSNTRLSNSLMRFYKTSDSLEDAHKVFDEMPDPDVISWNSLVSGYVQSGR 136

Query: 191 LEEARALFDEM----------------------------------------PKRNVVTWT 210
            +E   LF E+                                         K NVV   
Sbjct: 137 FQEGICLFLELHRSDVFPNEFSFTAALAACARLHLSPLGACIHSKLVKLGLEKGNVVVGN 196

Query: 211 TMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVA 270
            ++  Y +   +D A  +F+ M E++ VSW A++   + +G++     FF  MP    V 
Sbjct: 197 CLIDMYGKCGFMDDAVLVFQHMEEKDTVSWNAIVASCSRNGKLELGLWFFHQMPNPDTVT 256

Query: 271 CNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGA 330
            NE+I  F   GD + A  V   M   +  +W+ ++  Y       EA   F +M   G 
Sbjct: 257 YNELIDAFVKSGDFNNAFQVLSDMPNPNSSSWNTILTGYVNSEKSGEATEFFTKMHSSGV 316

Query: 331 ALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKW 390
             +                   G  +HA   +   D  + VASALI MY KCG L  A+ 
Sbjct: 317 RFDEYSLSIVLAAVAALAVVPWGSLIHACAHKLGLDSRVVVASALIDMYSKCGMLKHAEL 376

Query: 391 IFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSG-VPPDDISFIGVLSACSYSG 449
           +F   P K++++WN MI+GY+++G   EA+ +F  +     + PD  +F+ +L+ CS+  
Sbjct: 377 MFWTMPRKNLIVWNEMISGYARNGDSIEAIKLFNQLKQERFLKPDRFTFLNLLAVCSHCE 436

Query: 450 KVKE-GREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGS 508
              E     FE M  +Y+++P +EH   ++  +G+ G+V  A +++++     D + W +
Sbjct: 437 VPMEVMLGYFEMMINEYRIKPSVEHCCSLIRAMGQRGEVWQAKQVIQEFGFGYDGVAWRA 496

Query: 509 LLGACRTHMKLDLAEVAVEKLAQL--EPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTR 566
           LLGAC     L  A+    K+ +L    K+   Y+++S++YA   RW +V  +R+ ++  
Sbjct: 497 LLGACSARKDLKAAKTVAAKMIELGDADKDEYLYIVMSNLYAYHERWREVGQIRKIMRES 556

Query: 567 SVIKLPGYSWIEVEKKAHMF 586
            V+K  G SWI+   K   +
Sbjct: 557 GVLKEVGSSWIDSRTKCSSY 576



 Score = 96.7 bits (239), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 149/344 (43%), Gaps = 24/344 (6%)

Query: 3   YGYSTLRVCMVQVRFQCTSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYF 62
           +GY T    +   R    S   +  Y     +E+A KVFDE P       SWN++V+ Y 
Sbjct: 78  HGYVTKHGFVSNTRL---SNSLMRFYKTSDSLEDAHKVFDEMPD--PDVISWNSLVSGYV 132

Query: 63  QAHQPHQAVTLFETTPEKNIV----SWNGMVSGFVKN-----GMVAEARRVFDAMPVRNV 113
           Q+ +  + + LF      ++     S+   ++   +      G    ++ V   +   NV
Sbjct: 133 QSGRFQEGICLFLELHRSDVFPNEFSFTAALAACARLHLSPLGACIHSKLVKLGLEKGNV 192

Query: 114 VSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVK 173
           V    ++  Y + G +++A  +F  M EK+ VSW  ++    ++ ++E     F  MP  
Sbjct: 193 VVGNCLIDMYGKCGFMDDAVLVFQHMEEKDTVSWNAIVASCSRNGKLELGLWFFHQMPNP 252

Query: 174 DVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMP 233
           D V    +I  + + G    A  +  +MP  N  +W T+++GY  + +   A + F  M 
Sbjct: 253 DTVTYNELIDAFVKSGDFNNAFQVLSDMPNPNSSSWNTILTGYVNSEKSGEATEFFTKMH 312

Query: 234 ER----NEVSWTAMLMGYTHS-----GRMREASEFFDAMPVKPVVACNEMIMGFGFDGDV 284
                 +E S + +L           G +  A      +  + VVA + +I  +   G +
Sbjct: 313 SSGVRFDEYSLSIVLAAVAALAVVPWGSLIHACAHKLGLDSRVVVA-SALIDMYSKCGML 371

Query: 285 DRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQRE 328
             A+ +F  M  ++   W+ MI  Y R G  +EA+ LF ++++E
Sbjct: 372 KHAELMFWTMPRKNLIVWNEMISGYARNGDSIEAIKLFNQLKQE 415


>AT1G22830.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:8076921-8079032 FORWARD
           LENGTH=703
          Length = 703

 Score =  202 bits (513), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 149/567 (26%), Positives = 265/567 (46%), Gaps = 42/567 (7%)

Query: 57  MVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNV--- 113
           +V  Y   +   +A T+ E +   + + WN ++  +++N    E+  V+  M  + +   
Sbjct: 124 LVTFYSAFNLLDEAQTITENSEILHPLPWNVLIGSYIRNKRFQESVSVYKRMMSKGIRAD 183

Query: 114 -VSWTSMVR----------GYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVED 162
             ++ S+++          G V  G++E +          N+     ++    +  +V+ 
Sbjct: 184 EFTYPSVIKACAALLDFAYGRVVHGSIEVSSH------RCNLYVCNALISMYKRFGKVDV 237

Query: 163 ARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEM----PKRNVVTWTTMVSGYAR 218
           AR+LFD M  +D V+   +I  Y  E +L EA  L D M     + ++VTW T+  G   
Sbjct: 238 ARRLFDRMSERDAVSWNAIINCYTSEEKLGEAFKLLDRMYLSGVEASIVTWNTIAGGCLE 297

Query: 219 NRRVDVARKLFEVMPERN-EVSWTAMLMGY---THSGRMREASEFFDAMPVKPVVAC--- 271
                 A      M   N  +   AM+ G    +H G ++   + F  + ++        
Sbjct: 298 AGNYIGALNCVVGMRNCNVRIGSVAMINGLKACSHIGALKWG-KVFHCLVIRSCSFSHDI 356

Query: 272 ----NEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQR 327
               N +I  +    D+  A  VF+++      TW+++I  +       E   L   M  
Sbjct: 357 DNVRNSLITMYSRCSDLRHAFIVFQQVEANSLSTWNSIISGFAYNERSEETSFLLKEMLL 416

Query: 328 EGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQD-LYVASALITMYVKCGDLV 386
            G   N                  HG++ H  ++R +  +D L + ++L+ MY K G+++
Sbjct: 417 SGFHPNHITLASILPLFARVGNLQHGKEFHCYILRRQSYKDCLILWNSLVDMYAKSGEII 476

Query: 387 RAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACS 446
            AK +F+    +D V + S+I GY + G GE AL  F+DM  SG+ PD ++ + VLSACS
Sbjct: 477 AAKRVFDSMRKRDKVTYTSLIDGYGRLGKGEVALAWFKDMDRSGIKPDHVTMVAVLSACS 536

Query: 447 YSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVW 506
           +S  V+EG  +F  M+  + +   +EHY+CMVDL  RAG ++ A +I   +P EP + + 
Sbjct: 537 HSNLVREGHWLFTKMEHVFGIRLRLEHYSCMVDLYCRAGYLDKARDIFHTIPYEPSSAMC 596

Query: 507 GSLLGACRTHMKLDLAEVAVEK-LAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKT 565
            +LL AC  H   ++ E A +K L + +P++ G Y+LL+ MYA  G W  +  V+  +  
Sbjct: 597 ATLLKACLIHGNTNIGEWAADKLLLETKPEHLGHYMLLADMYAVTGSWSKLVTVKTLLSD 656

Query: 566 RSVIKLPGYSWIEVEKKAHMFVGGDNN 592
             V K   ++ +E + +    + G+NN
Sbjct: 657 LGVQKAHEFALMETDSE----LDGENN 679



 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 94/413 (22%), Positives = 173/413 (41%), Gaps = 53/413 (12%)

Query: 174 DVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRR----VDVARKLF 229
           D V V  ++  Y     L+EA+ + +     + + W  ++  Y RN+R    V V +++ 
Sbjct: 117 DSVLVPKLVTFYSAFNLLDEAQTITENSEILHPLPWNVLIGSYIRNKRFQESVSVYKRMM 176

Query: 230 EVMPERNEVSW------TAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGD 283
                 +E ++       A L+ + + GR+   S    +      V CN +I  +   G 
Sbjct: 177 SKGIRADEFTYPSVIKACAALLDFAY-GRVVHGSIEVSSHRCNLYV-CNALISMYKRFGK 234

Query: 284 VDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREG-------------- 329
           VD A+ +F++M ERD  +W+A+I  Y  +    EA  L  RM   G              
Sbjct: 235 VDVARRLFDRMSERDAVSWNAIINCYTSEEKLGEAFKLLDRMYLSGVEASIVTWNTIAGG 294

Query: 330 --------AAL-------NFPXXXXXXXXXXXXXXXDH------GRQVHARLVRS-EFDQ 367
                    AL       N                  H      G+  H  ++RS  F  
Sbjct: 295 CLEAGNYIGALNCVVGMRNCNVRIGSVAMINGLKACSHIGALKWGKVFHCLVIRSCSFSH 354

Query: 368 DL-YVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDM 426
           D+  V ++LITMY +C DL  A  +F +     +  WNS+I+G++ +   EE   + ++M
Sbjct: 355 DIDNVRNSLITMYSRCSDLRHAFIVFQQVEANSLSTWNSIISGFAYNERSEETSFLLKEM 414

Query: 427 CLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQ 486
            LSG  P+ I+   +L   +  G ++ G+E    +  +   +  +  +  +VD+  ++G+
Sbjct: 415 LLSGFHPNHITLASILPLFARVGNLQHGKEFHCYILRRQSYKDCLILWNSLVDMYAKSGE 474

Query: 487 VNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGP 539
           +  A  + + M  + D + + SL+     + +L   EVA+     ++     P
Sbjct: 475 IIAAKRVFDSM-RKRDKVTYTSLIDG---YGRLGKGEVALAWFKDMDRSGIKP 523



 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 164/369 (44%), Gaps = 30/369 (8%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVR--- 111
           NA+++ Y +  +   A  LF+   E++ VSWN +++ +     + EA ++ D M +    
Sbjct: 223 NALISMYKRFGKVDVARRLFDRMSERDAVSWNAIINCYTSEEKLGEAFKLLDRMYLSGVE 282

Query: 112 -NVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV-VSWTVMLGGLLKDSRVEDAR--KLF 167
            ++V+W ++  G ++ GN   A      M   NV +    M+ GL   S +   +  K+F
Sbjct: 283 ASIVTWNTIAGGCLEAGNYIGALNCVVGMRNCNVRIGSVAMINGLKACSHIGALKWGKVF 342

Query: 168 DMMPVK------DVVAVTN-MIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNR 220
             + ++      D+  V N +I  Y     L  A  +F ++   ++ TW +++SG+A N 
Sbjct: 343 HCLVIRSCSFSHDIDNVRNSLITMYSRCSDLRHAFIVFQQVEANSLSTWNSIISGFAYNE 402

Query: 221 RVDVARKLFEVMP----ERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKP-----VVAC 271
           R +    L + M       N ++  ++L  +   G ++   EF   +  +      ++  
Sbjct: 403 RSEETSFLLKEMLLSGFHPNHITLASILPLFARVGNLQHGKEFHCYILRRQSYKDCLILW 462

Query: 272 NEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAA 331
           N ++  +   G++  AK VF+ MR+RD  T++++I  Y R G    AL  F  M R G  
Sbjct: 463 NSLVDMYAKSGEIIAAKRVFDSMRKRDKVTYTSLIDGYGRLGKGEVALAWFKDMDRSGIK 522

Query: 332 LNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSE--FDQDLYVA--SALITMYVKCGDLVR 387
              P               +  R+ H    + E  F   L +   S ++ +Y + G L +
Sbjct: 523 ---PDHVTMVAVLSACSHSNLVREGHWLFTKMEHVFGIRLRLEHYSCMVDLYCRAGYLDK 579

Query: 388 AKWIFNRYP 396
           A+ IF+  P
Sbjct: 580 ARDIFHTIP 588



 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 81/174 (46%), Gaps = 16/174 (9%)

Query: 353 GRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQ 412
           G+Q+HA  + S  + D  +   L+T Y     L  A+ I     +   + WN +I  Y +
Sbjct: 102 GQQLHAHCISSGLEFDSVLVPKLVTFYSAFNLLDEAQTITENSEILHPLPWNVLIGSYIR 161

Query: 413 HGLGEEALNVFRDMCLSGVPPDDISFIGVLSACS-----YSGKVKEGREIFESMKCKYQV 467
           +   +E+++V++ M   G+  D+ ++  V+ AC+       G+V  G     S +C    
Sbjct: 162 NKRFQESVSVYKRMMSKGIRADEFTYPSVIKACAALLDFAYGRVVHGSIEVSSHRCNL-- 219

Query: 468 EPGIEHYAC--MVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKL 519
                 Y C  ++ +  R G+V+ A  + ++M  E DA+ W +++    +  KL
Sbjct: 220 ------YVCNALISMYKRFGKVDVARRLFDRMS-ERDAVSWNAIINCYTSEEKL 266


>AT1G22830.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:8076921-8079032 FORWARD
           LENGTH=703
          Length = 703

 Score =  202 bits (513), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 149/567 (26%), Positives = 265/567 (46%), Gaps = 42/567 (7%)

Query: 57  MVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNV--- 113
           +V  Y   +   +A T+ E +   + + WN ++  +++N    E+  V+  M  + +   
Sbjct: 124 LVTFYSAFNLLDEAQTITENSEILHPLPWNVLIGSYIRNKRFQESVSVYKRMMSKGIRAD 183

Query: 114 -VSWTSMVR----------GYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVED 162
             ++ S+++          G V  G++E +          N+     ++    +  +V+ 
Sbjct: 184 EFTYPSVIKACAALLDFAYGRVVHGSIEVSSH------RCNLYVCNALISMYKRFGKVDV 237

Query: 163 ARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEM----PKRNVVTWTTMVSGYAR 218
           AR+LFD M  +D V+   +I  Y  E +L EA  L D M     + ++VTW T+  G   
Sbjct: 238 ARRLFDRMSERDAVSWNAIINCYTSEEKLGEAFKLLDRMYLSGVEASIVTWNTIAGGCLE 297

Query: 219 NRRVDVARKLFEVMPERN-EVSWTAMLMGY---THSGRMREASEFFDAMPVKPVVAC--- 271
                 A      M   N  +   AM+ G    +H G ++   + F  + ++        
Sbjct: 298 AGNYIGALNCVVGMRNCNVRIGSVAMINGLKACSHIGALKWG-KVFHCLVIRSCSFSHDI 356

Query: 272 ----NEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQR 327
               N +I  +    D+  A  VF+++      TW+++I  +       E   L   M  
Sbjct: 357 DNVRNSLITMYSRCSDLRHAFIVFQQVEANSLSTWNSIISGFAYNERSEETSFLLKEMLL 416

Query: 328 EGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQD-LYVASALITMYVKCGDLV 386
            G   N                  HG++ H  ++R +  +D L + ++L+ MY K G+++
Sbjct: 417 SGFHPNHITLASILPLFARVGNLQHGKEFHCYILRRQSYKDCLILWNSLVDMYAKSGEII 476

Query: 387 RAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACS 446
            AK +F+    +D V + S+I GY + G GE AL  F+DM  SG+ PD ++ + VLSACS
Sbjct: 477 AAKRVFDSMRKRDKVTYTSLIDGYGRLGKGEVALAWFKDMDRSGIKPDHVTMVAVLSACS 536

Query: 447 YSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVW 506
           +S  V+EG  +F  M+  + +   +EHY+CMVDL  RAG ++ A +I   +P EP + + 
Sbjct: 537 HSNLVREGHWLFTKMEHVFGIRLRLEHYSCMVDLYCRAGYLDKARDIFHTIPYEPSSAMC 596

Query: 507 GSLLGACRTHMKLDLAEVAVEK-LAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKT 565
            +LL AC  H   ++ E A +K L + +P++ G Y+LL+ MYA  G W  +  V+  +  
Sbjct: 597 ATLLKACLIHGNTNIGEWAADKLLLETKPEHLGHYMLLADMYAVTGSWSKLVTVKTLLSD 656

Query: 566 RSVIKLPGYSWIEVEKKAHMFVGGDNN 592
             V K   ++ +E + +    + G+NN
Sbjct: 657 LGVQKAHEFALMETDSE----LDGENN 679



 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 94/413 (22%), Positives = 173/413 (41%), Gaps = 53/413 (12%)

Query: 174 DVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRR----VDVARKLF 229
           D V V  ++  Y     L+EA+ + +     + + W  ++  Y RN+R    V V +++ 
Sbjct: 117 DSVLVPKLVTFYSAFNLLDEAQTITENSEILHPLPWNVLIGSYIRNKRFQESVSVYKRMM 176

Query: 230 EVMPERNEVSW------TAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGD 283
                 +E ++       A L+ + + GR+   S    +      V CN +I  +   G 
Sbjct: 177 SKGIRADEFTYPSVIKACAALLDFAY-GRVVHGSIEVSSHRCNLYV-CNALISMYKRFGK 234

Query: 284 VDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREG-------------- 329
           VD A+ +F++M ERD  +W+A+I  Y  +    EA  L  RM   G              
Sbjct: 235 VDVARRLFDRMSERDAVSWNAIINCYTSEEKLGEAFKLLDRMYLSGVEASIVTWNTIAGG 294

Query: 330 --------AAL-------NFPXXXXXXXXXXXXXXXDH------GRQVHARLVRS-EFDQ 367
                    AL       N                  H      G+  H  ++RS  F  
Sbjct: 295 CLEAGNYIGALNCVVGMRNCNVRIGSVAMINGLKACSHIGALKWGKVFHCLVIRSCSFSH 354

Query: 368 DL-YVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDM 426
           D+  V ++LITMY +C DL  A  +F +     +  WNS+I+G++ +   EE   + ++M
Sbjct: 355 DIDNVRNSLITMYSRCSDLRHAFIVFQQVEANSLSTWNSIISGFAYNERSEETSFLLKEM 414

Query: 427 CLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQ 486
            LSG  P+ I+   +L   +  G ++ G+E    +  +   +  +  +  +VD+  ++G+
Sbjct: 415 LLSGFHPNHITLASILPLFARVGNLQHGKEFHCYILRRQSYKDCLILWNSLVDMYAKSGE 474

Query: 487 VNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGP 539
           +  A  + + M  + D + + SL+     + +L   EVA+     ++     P
Sbjct: 475 IIAAKRVFDSM-RKRDKVTYTSLIDG---YGRLGKGEVALAWFKDMDRSGIKP 523



 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 164/369 (44%), Gaps = 30/369 (8%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVR--- 111
           NA+++ Y +  +   A  LF+   E++ VSWN +++ +     + EA ++ D M +    
Sbjct: 223 NALISMYKRFGKVDVARRLFDRMSERDAVSWNAIINCYTSEEKLGEAFKLLDRMYLSGVE 282

Query: 112 -NVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV-VSWTVMLGGLLKDSRVEDAR--KLF 167
            ++V+W ++  G ++ GN   A      M   NV +    M+ GL   S +   +  K+F
Sbjct: 283 ASIVTWNTIAGGCLEAGNYIGALNCVVGMRNCNVRIGSVAMINGLKACSHIGALKWGKVF 342

Query: 168 DMMPVK------DVVAVTN-MIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNR 220
             + ++      D+  V N +I  Y     L  A  +F ++   ++ TW +++SG+A N 
Sbjct: 343 HCLVIRSCSFSHDIDNVRNSLITMYSRCSDLRHAFIVFQQVEANSLSTWNSIISGFAYNE 402

Query: 221 RVDVARKLFEVMP----ERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKP-----VVAC 271
           R +    L + M       N ++  ++L  +   G ++   EF   +  +      ++  
Sbjct: 403 RSEETSFLLKEMLLSGFHPNHITLASILPLFARVGNLQHGKEFHCYILRRQSYKDCLILW 462

Query: 272 NEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAA 331
           N ++  +   G++  AK VF+ MR+RD  T++++I  Y R G    AL  F  M R G  
Sbjct: 463 NSLVDMYAKSGEIIAAKRVFDSMRKRDKVTYTSLIDGYGRLGKGEVALAWFKDMDRSGIK 522

Query: 332 LNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSE--FDQDLYVA--SALITMYVKCGDLVR 387
              P               +  R+ H    + E  F   L +   S ++ +Y + G L +
Sbjct: 523 ---PDHVTMVAVLSACSHSNLVREGHWLFTKMEHVFGIRLRLEHYSCMVDLYCRAGYLDK 579

Query: 388 AKWIFNRYP 396
           A+ IF+  P
Sbjct: 580 ARDIFHTIP 588



 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 81/174 (46%), Gaps = 16/174 (9%)

Query: 353 GRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQ 412
           G+Q+HA  + S  + D  +   L+T Y     L  A+ I     +   + WN +I  Y +
Sbjct: 102 GQQLHAHCISSGLEFDSVLVPKLVTFYSAFNLLDEAQTITENSEILHPLPWNVLIGSYIR 161

Query: 413 HGLGEEALNVFRDMCLSGVPPDDISFIGVLSACS-----YSGKVKEGREIFESMKCKYQV 467
           +   +E+++V++ M   G+  D+ ++  V+ AC+       G+V  G     S +C    
Sbjct: 162 NKRFQESVSVYKRMMSKGIRADEFTYPSVIKACAALLDFAYGRVVHGSIEVSSHRCNL-- 219

Query: 468 EPGIEHYAC--MVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKL 519
                 Y C  ++ +  R G+V+ A  + ++M  E DA+ W +++    +  KL
Sbjct: 220 ------YVCNALISMYKRFGKVDVARRLFDRMS-ERDAVSWNAIINCYTSEEKL 266


>AT1G10330.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:3388747-3390150 FORWARD
           LENGTH=467
          Length = 467

 Score =  200 bits (509), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 122/409 (29%), Positives = 205/409 (50%), Gaps = 13/409 (3%)

Query: 180 NMIGGYCEEGRLEEARALFDEMPKRNV----VTWTTMVSGYARNRRVDVARKLFEVMPER 235
            +I  Y   G  + + ALF  M   +V    +T+ +++     +  V     L     +R
Sbjct: 56  TLIRSYLTTGEYKTSLALFTHMLASHVQPNNLTFPSLIKAACSSFSVSYGVALHGQALKR 115

Query: 236 ----NEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVF 291
               +    T+ +  Y   G +  + + FD +    VVACN ++   G +G++D A   F
Sbjct: 116 GFLWDPFVQTSFVRFYGEVGDLESSRKMFDDILNPCVVACNSLLDACGRNGEMDYAFEYF 175

Query: 292 EKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXD 351
           ++M   D  +W+ +I  + +KG   +AL +F  M +   A+  P               D
Sbjct: 176 QRMPVTDVVSWTTVINGFSKKGLHAKALMVFGEMIQNERAVITPNEATFVSVLSSCANFD 235

Query: 352 HG-----RQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSM 406
            G     +Q+H  ++  E      + +AL+ MY K GDL  A  IF++   K V  WN++
Sbjct: 236 QGGIRLGKQIHGYVMSKEIILTTTLGTALLDMYGKAGDLEMALTIFDQIRDKKVCAWNAI 295

Query: 407 ITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQ 466
           I+  + +G  ++AL +F  M  S V P+ I+ + +L+AC+ S  V  G ++F S+  +Y+
Sbjct: 296 ISALASNGRPKQALEMFEMMKSSYVHPNGITLLAILTACARSKLVDLGIQLFSSICSEYK 355

Query: 467 VEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAV 526
           + P  EHY C+VDL+GRAG + DA   ++ +P EPDA V G+LLGAC+ H   +L     
Sbjct: 356 IIPTSEHYGCVVDLIGRAGLLVDAANFIQSLPFEPDASVLGALLGACKIHENTELGNTVG 415

Query: 527 EKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYS 575
           ++L  L+P++ G YV LS   A    W + E +R+ +    + K+P YS
Sbjct: 416 KQLIGLQPQHCGQYVALSTFNALDSNWSEAEKMRKAMIEAGIRKIPAYS 464



 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/263 (21%), Positives = 103/263 (39%), Gaps = 52/263 (19%)

Query: 116 WTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDS----RVEDARKLFDMMP 171
           + +++R Y+  G  + +  LF  M   +V    +    L+K +     V     L     
Sbjct: 54  YNTLIRSYLTTGEYKTSLALFTHMLASHVQPNNLTFPSLIKAACSSFSVSYGVALHGQAL 113

Query: 172 VK----DVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARK 227
            +    D    T+ +  Y E G LE +R +FD++    VV   +++    RN  +D A +
Sbjct: 114 KRGFLWDPFVQTSFVRFYGEVGDLESSRKMFDDILNPCVVACNSLLDACGRNGEMDYAFE 173

Query: 228 LFEVMPERNEVSWTAMLMGYTHSGRMREASEFF--------------DAMPVKPVVACNE 273
            F+ MP  + VSWT ++ G++  G   +A   F              +A  V  + +C  
Sbjct: 174 YFQRMPVTDVVSWTTVINGFSKKGLHAKALMVFGEMIQNERAVITPNEATFVSVLSSCAN 233

Query: 274 MIMG------------------------------FGFDGDVDRAKAVFEKMRERDDGTWS 303
              G                              +G  GD++ A  +F+++R++    W+
Sbjct: 234 FDQGGIRLGKQIHGYVMSKEIILTTTLGTALLDMYGKAGDLEMALTIFDQIRDKKVCAWN 293

Query: 304 AMIKVYERKGFELEALGLFARMQ 326
           A+I      G   +AL +F  M+
Sbjct: 294 AIISALASNGRPKQALEMFEMMK 316



 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 93/208 (44%), Gaps = 17/208 (8%)

Query: 73  LFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEA 132
           +F+      +V+ N ++    +NG +  A   F  MPV +VVSWT+++ G+ ++G   +A
Sbjct: 143 MFDDILNPCVVACNSLLDACGRNGEMDYAFEYFQRMPVTDVVSWTTVINGFSKKGLHAKA 202

Query: 133 ERLFWRMPEK-------NVVSWTVMLGGL--LKDSRVEDARKLFDMMPVKDVVAVTNMIG 183
             +F  M +        N  ++  +L          +   +++   +  K+++  T +  
Sbjct: 203 LMVFGEMIQNERAVITPNEATFVSVLSSCANFDQGGIRLGKQIHGYVMSKEIILTTTLGT 262

Query: 184 G----YCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPER---- 235
                Y + G LE A  +FD++  + V  W  ++S  A N R   A ++FE+M       
Sbjct: 263 ALLDMYGKAGDLEMALTIFDQIRDKKVCAWNAIISALASNGRPKQALEMFEMMKSSYVHP 322

Query: 236 NEVSWTAMLMGYTHSGRMREASEFFDAM 263
           N ++  A+L     S  +    + F ++
Sbjct: 323 NGITLLAILTACARSKLVDLGIQLFSSI 350


>AT1G09220.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:2977952-2979466 REVERSE
           LENGTH=504
          Length = 504

 Score =  199 bits (507), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 119/342 (34%), Positives = 188/342 (54%), Gaps = 5/342 (1%)

Query: 241 TAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDG 300
           TA++  Y   G M +A + FD MP +  V  N MI G    GD ++A    EKM  R   
Sbjct: 162 TALVGMYLVGGNMIDAHKVFDEMPERNPVTWNVMITGLTNLGDFEKALCFLEKMPNRTVV 221

Query: 301 TWSAMIKVYERKGFELEALGLFARMQR-EGAALNFPXXXXXXXXXXXXXXXDHGRQVHAR 359
           +W+ +I  Y R     EA+ LF+RM   +    N                      VHA 
Sbjct: 222 SWTTIIDGYARVDKPKEAILLFSRMVACDAIKPNEITILAILPAVWNLGDLKMCGSVHAY 281

Query: 360 LVRSEF-DQDLYVASALITMYVKCGDLVRAKWIFNRYP--LKDVVMWNSMITGYSQHGLG 416
           + +  F   D+ V ++LI  Y KCG +  A   F   P   K++V W +MI+ ++ HG+G
Sbjct: 282 VGKRGFVPCDIRVTNSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMISAFAIHGMG 341

Query: 417 EEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEG-REIFESMKCKYQVEPGIEHYA 475
           +EA+++F+DM   G+ P+ ++ I VL+ACS+ G  +E   E F +M  +Y++ P ++HY 
Sbjct: 342 KEAVSMFKDMERLGLKPNRVTMISVLNACSHGGLAEEEFLEFFNTMVNEYKITPDVKHYG 401

Query: 476 CMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPK 535
           C+VD+L R G++ +A +I  ++P+E  A+VW  LLGAC  +   +LAE    KL +LE  
Sbjct: 402 CLVDMLRRKGRLEEAEKIALEIPIEEKAVVWRMLLGACSVYDDAELAERVTRKLMELERS 461

Query: 536 NAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWI 577
           + G YVL+S+++   GR+ D +  R+++  R V KLPG+S +
Sbjct: 462 HGGDYVLMSNIFCGTGRFLDAQRFRKQMDVRGVAKLPGHSQV 503



 Score = 87.0 bits (214), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 108/228 (47%), Gaps = 21/228 (9%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVV 114
            A+V  Y        A  +F+  PE+N V+WN M++G    G   +A    + MP R VV
Sbjct: 162 TALVGMYLVGGNMIDAHKVFDEMPERNPVTWNVMITGLTNLGDFEKALCFLEKMPNRTVV 221

Query: 115 SWTSMVRGYVQEGNVEEAERLFWRMPEKNVVS---WTVM--------LGGLLKDSRVEDA 163
           SWT+++ GY +    +EA  LF RM   + +     T++        LG L     V   
Sbjct: 222 SWTTIIDGYARVDKPKEAILLFSRMVACDAIKPNEITILAILPAVWNLGDLKMCGSVHAY 281

Query: 164 RKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMP--KRNVVTWTTMVSGYARNRR 221
                 +P  D+    ++I  Y + G ++ A   F E+P  ++N+V+WTTM+S +A +  
Sbjct: 282 VGKRGFVPC-DIRVTNSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMISAFAIHGM 340

Query: 222 VDVARKLFEVMPER-----NEVSWTAMLMGYTHSGRMREAS-EFFDAM 263
              A  +F+ M ER     N V+  ++L   +H G   E   EFF+ M
Sbjct: 341 GKEAVSMFKDM-ERLGLKPNRVTMISVLNACSHGGLAEEEFLEFFNTM 387



 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 12/205 (5%)

Query: 141 EKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDE 200
           E +V   T ++G  L    + DA K+FD MP ++ V    MI G    G  E+A    ++
Sbjct: 155 ESHVYVQTALVGMYLVGGNMIDAHKVFDEMPERNPVTWNVMITGLTNLGDFEKALCFLEK 214

Query: 201 MPKRNVVTWTTMVSGYARNRRVDVARKLFEVMP-----ERNEVSWTAMLMGYTHSGRMRE 255
           MP R VV+WTT++ GYAR  +   A  LF  M      + NE++  A+L    + G ++ 
Sbjct: 215 MPNRTVVSWTTIIDGYARVDKPKEAILLFSRMVACDAIKPNEITILAILPAVWNLGDLKM 274

Query: 256 ASEFFDAMPVKPVVAC-----NEMIMGFGFDGDVDRAKAVFEKMRE--RDDGTWSAMIKV 308
                  +  +  V C     N +I  +   G +  A   F ++    ++  +W+ MI  
Sbjct: 275 CGSVHAYVGKRGFVPCDIRVTNSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMISA 334

Query: 309 YERKGFELEALGLFARMQREGAALN 333
           +   G   EA+ +F  M+R G   N
Sbjct: 335 FAIHGMGKEAVSMFKDMERLGLKPN 359



 Score = 62.8 bits (151), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 107/279 (38%), Gaps = 57/279 (20%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKN 81
           T  +  Y   G + +A KVFDE P   R   +WN M+          +A+   E  P + 
Sbjct: 162 TALVGMYLVGGNMIDAHKVFDEMPE--RNPVTWNVMITGLTNLGDFEKALCFLEKMPNRT 219

Query: 82  IVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVS-------------W------------ 116
           +VSW  ++ G+ +     EA  +F  M   + +              W            
Sbjct: 220 VVSWTTIIDGYARVDKPKEAILLFSRMVACDAIKPNEITILAILPAVWNLGDLKMCGSVH 279

Query: 117 ----------------TSMVRGYVQEGNVEEAERLFWRMPE--KNVVSWTVMLGGLLKDS 158
                            S++  Y + G ++ A + F  +P   KN+VSWT M+       
Sbjct: 280 AYVGKRGFVPCDIRVTNSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMISAFAIHG 339

Query: 159 RVEDARKLFDMM------PVK-DVVAVTNMI--GGYCEEGRLEEARALFDEMP-KRNVVT 208
             ++A  +F  M      P +  +++V N    GG  EE  LE    + +E     +V  
Sbjct: 340 MGKEAVSMFKDMERLGLKPNRVTMISVLNACSHGGLAEEEFLEFFNTMVNEYKITPDVKH 399

Query: 209 WTTMVSGYARNRRVDVARKL-FEVMPERNEVSWTAMLMG 246
           +  +V    R  R++ A K+  E+  E   V W  ML+G
Sbjct: 400 YGCLVDMLRRKGRLEEAEKIALEIPIEEKAVVWR-MLLG 437



 Score = 52.8 bits (125), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 95/203 (46%), Gaps = 20/203 (9%)

Query: 21  STGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTP-- 78
           +   I  YA+ G I++A K F E P+  +   SW  M++A+       +AV++F+     
Sbjct: 295 TNSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMISAFAIHGMGKEAVSMFKDMERL 354

Query: 79  --EKNIVSWNGMVSGFVKNGMVAEA-RRVFDAMP-----VRNVVSWTSMVRGYVQEGNVE 130
             + N V+   +++     G+  E     F+ M        +V  +  +V    ++G +E
Sbjct: 355 GLKPNRVTMISVLNACSHGGLAEEEFLEFFNTMVNEYKITPDVKHYGCLVDMLRRKGRLE 414

Query: 131 EAERLFWRMP-EKNVVSWTVMLGG--LLKDSRVED--ARKLFDMMPVK--DVVAVTNMIG 183
           EAE++   +P E+  V W ++LG   +  D+ + +   RKL ++      D V ++N+  
Sbjct: 415 EAEKIALEIPIEEKAVVWRMLLGACSVYDDAELAERVTRKLMELERSHGGDYVLMSNI-- 472

Query: 184 GYCEEGRLEEARALFDEMPKRNV 206
            +C  GR  +A+    +M  R V
Sbjct: 473 -FCGTGRFLDAQRFRKQMDVRGV 494



 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/185 (20%), Positives = 74/185 (40%), Gaps = 33/185 (17%)

Query: 365 FDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFR 424
           F+  +YV +AL+ MY+  G+++ A  +F+  P ++ V WN MITG +  G  E+AL    
Sbjct: 154 FESHVYVQTALVGMYLVGGNMIDAHKVFDEMPERNPVTWNVMITGLTNLGDFEKALCFLE 213

Query: 425 DM--------------------------------CLSGVPPDDISFIGVLSACSYSGKVK 452
            M                                    + P++I+ + +L A    G +K
Sbjct: 214 KMPNRTVVSWTTIIDGYARVDKPKEAILLFSRMVACDAIKPNEITILAILPAVWNLGDLK 273

Query: 453 EGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPM-EPDAIVWGSLLG 511
               +   +  +  V   I     ++D   + G +  A +   ++P    + + W +++ 
Sbjct: 274 MCGSVHAYVGKRGFVPCDIRVTNSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMIS 333

Query: 512 ACRTH 516
           A   H
Sbjct: 334 AFAIH 338


>AT3G28640.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:10731518-10733032 REVERSE
           LENGTH=504
          Length = 504

 Score =  198 bits (504), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 109/315 (34%), Positives = 178/315 (56%), Gaps = 7/315 (2%)

Query: 287 AKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXX 346
           A+ VF+++ + D   W  ++  Y R G   E L +F  M  +G   +             
Sbjct: 171 ARKVFDEIPQPDVVKWDVLMNGYVRCGLGSEGLEVFREMLVKGLEPDEFSVTTALTACAQ 230

Query: 347 XXXXDHGRQVHARLVR-SEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNS 405
                 G+ +H  + + S  + D++V +AL+ MY KCG +  A  +F +   ++V  W +
Sbjct: 231 VGALAQGKWIHEFVKKKSWIESDVFVGTALVDMYAKCGCIETAVEVFKKLTRRNVFSWAA 290

Query: 406 MITGYSQHGLGEEALNVFRDMCL-SGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCK 464
           +I GY+ +G  ++A+     +    G+ PD +  +GVL+AC++ G ++EGR + E+M+ +
Sbjct: 291 LIGGYAAYGYAKKAMTCLERLEREDGIKPDSVVLLGVLAACAHGGFLEEGRSMLENMEAR 350

Query: 465 YQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEV 524
           Y++ P  EHY+C+VDL+ RAG+++DA+ ++EKMPM+P A VWG+LL  CRTH  ++L E+
Sbjct: 351 YEITPKHEHYSCIVDLMCRAGRLDDALNLIEKMPMKPLASVWGALLNGCRTHKNVELGEL 410

Query: 525 AVEKLAQLEPKNA----GPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVE 580
           AV+ L  LE  N        V LS++Y S  R  +   VR  I+ R V K PG+S +EV+
Sbjct: 411 AVKNLLDLEKGNVEEEEAALVQLSNIYFSVQRNPEASKVRGMIEQRGVRKTPGWSVLEVD 470

Query: 581 KKAHMFVGGDNNCHP 595
                FV GD + HP
Sbjct: 471 GNVTKFVSGDVS-HP 484



 Score =  102 bits (255), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 127/266 (47%), Gaps = 5/266 (1%)

Query: 287 AKAVFEKMRERDDGTWSAMIKVYERKG---FELEALGLFARMQREGAALNFPXXXXXXXX 343
           A ++F+ +   +   +  MI++  R       L    L  + + E  A ++         
Sbjct: 66  ASSIFDSIEIPNSFVYDTMIRICSRSSQPHLGLRYFLLMVKEEEEDIAPSYLTFHFLIVA 125

Query: 344 XXXXXXXDHGRQVHARLVRSE-FDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVM 402
                    G+Q+H  +V++  F  D +V + ++ +YV+   L+ A+ +F+  P  DVV 
Sbjct: 126 CLKACFFSVGKQIHCWVVKNGVFLSDSHVQTGVLRIYVEDKLLLDARKVFDEIPQPDVVK 185

Query: 403 WNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMK 462
           W+ ++ GY + GLG E L VFR+M + G+ PD+ S    L+AC+  G + +G+ I E +K
Sbjct: 186 WDVLMNGYVRCGLGSEGLEVFREMLVKGLEPDEFSVTTALTACAQVGALAQGKWIHEFVK 245

Query: 463 CKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLA 522
            K  +E  +     +VD+  + G +  AVE+ +K+    +   W +L+G    +     A
Sbjct: 246 KKSWIESDVFVGTALVDMYAKCGCIETAVEVFKKLTRR-NVFSWAALIGGYAAYGYAKKA 304

Query: 523 EVAVEKLAQLEPKNAGPYVLLSHMYA 548
              +E+L + +       VLL  + A
Sbjct: 305 MTCLERLEREDGIKPDSVVLLGVLAA 330



 Score = 69.3 bits (168), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 68/300 (22%), Positives = 125/300 (41%), Gaps = 32/300 (10%)

Query: 142 KNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEM 201
           K +  W V  G  L DS V+                 T ++  Y E+  L +AR +FDE+
Sbjct: 136 KQIHCWVVKNGVFLSDSHVQ-----------------TGVLRIYVEDKLLLDARKVFDEI 178

Query: 202 PKRNVVTWTTMVSGYAR----NRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREAS 257
           P+ +VV W  +++GY R    +  ++V R++     E +E S T  L      G + +  
Sbjct: 179 PQPDVVKWDVLMNGYVRCGLGSEGLEVFREMLVKGLEPDEFSVTTALTACAQVGALAQGK 238

Query: 258 EFFDAMPVKP-----VVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERK 312
              + +  K      V     ++  +   G ++ A  VF+K+  R+  +W+A+I  Y   
Sbjct: 239 WIHEFVKKKSWIESDVFVGTALVDMYAKCGCIETAVEVFKKLTRRNVFSWAALIGGYAAY 298

Query: 313 GFELEALGLFARMQRE-GAALNFPXXXXXXXXXXXXXXXDHGRQVHARL-VRSEFDQDLY 370
           G+  +A+    R++RE G   +                 + GR +   +  R E      
Sbjct: 299 GYAKKAMTCLERLEREDGIKPDSVVLLGVLAACAHGGFLEEGRSMLENMEARYEITPKHE 358

Query: 371 VASALITMYVKCGDLVRAKWIFNRYPLKDVV-MWNSMITGYSQHG---LGEEALNVFRDM 426
             S ++ +  + G L  A  +  + P+K +  +W +++ G   H    LGE A+    D+
Sbjct: 359 HYSCIVDLMCRAGRLDDALNLIEKMPMKPLASVWGALLNGCRTHKNVELGELAVKNLLDL 418



 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 115/242 (47%), Gaps = 25/242 (10%)

Query: 117 TSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVK--- 173
           T ++R YV++  + +A ++F  +P+ +VV W V++ G ++     +  ++F  M VK   
Sbjct: 156 TGVLRIYVEDKLLLDARKVFDEIPQPDVVKWDVLMNGYVRCGLGSEGLEVFREMLVKGLE 215

Query: 174 -DVVAVTNMIGGYCEEGRLEEARALFDEMPKR-----NVVTWTTMVSGYARNRRVDVARK 227
            D  +VT  +    + G L + + + + + K+     +V   T +V  YA+   ++ A +
Sbjct: 216 PDEFSVTTALTACAQVGALAQGKWIHEFVKKKSWIESDVFVGTALVDMYAKCGCIETAVE 275

Query: 228 LFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMP----VKP-VVACNEMIMGFGFDG 282
           +F+ +  RN  SW A++ GY   G  ++A    + +     +KP  V    ++      G
Sbjct: 276 VFKKLTRRNVFSWAALIGGYAAYGYAKKAMTCLERLEREDGIKPDSVVLLGVLAACAHGG 335

Query: 283 DVDRAKAVFEKMRERDDGT-----WSAMIKVYERKGFELEALGLFARMQRE------GAA 331
            ++  +++ E M  R + T     +S ++ +  R G   +AL L  +M  +      GA 
Sbjct: 336 FLEEGRSMLENMEARYEITPKHEHYSCIVDLMCRAGRLDDALNLIEKMPMKPLASVWGAL 395

Query: 332 LN 333
           LN
Sbjct: 396 LN 397



 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 106/245 (43%), Gaps = 22/245 (8%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKN 81
           TG +  Y     + +ARKVFDE P        W+ ++  Y +     + + +F     K 
Sbjct: 156 TGVLRIYVEDKLLLDARKVFDEIP--QPDVVKWDVLMNGYVRCGLGSEGLEVFREMLVKG 213

Query: 82  I----VSWNGMVSGFVKNGMVAEARRVFDAMPVR-----NVVSWTSMVRGYVQEGNVEEA 132
           +     S    ++   + G +A+ + + + +  +     +V   T++V  Y + G +E A
Sbjct: 214 LEPDEFSVTTALTACAQVGALAQGKWIHEFVKKKSWIESDVFVGTALVDMYAKCGCIETA 273

Query: 133 ERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVK-----DVVAVTNMIGGYCE 187
             +F ++  +NV SW  ++GG       + A    + +  +     D V +  ++     
Sbjct: 274 VEVFKKLTRRNVFSWAALIGGYAAYGYAKKAMTCLERLEREDGIKPDSVVLLGVLAACAH 333

Query: 188 EGRLEEARALFDEMPKRNVVT-----WTTMVSGYARNRRVDVARKLFEVMPERNEVS-WT 241
            G LEE R++ + M  R  +T     ++ +V    R  R+D A  L E MP +   S W 
Sbjct: 334 GGFLEEGRSMLENMEARYEITPKHEHYSCIVDLMCRAGRLDDALNLIEKMPMKPLASVWG 393

Query: 242 AMLMG 246
           A+L G
Sbjct: 394 ALLNG 398



 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 100/235 (42%), Gaps = 50/235 (21%)

Query: 86  NGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV- 144
            G++  +V++ ++ +AR+VFD +P  +VV W  ++ GYV+ G   E   +F  M  K + 
Sbjct: 156 TGVLRIYVEDKLLLDARKVFDEIPQPDVVKWDVLMNGYVRCGLGSEGLEVFREMLVKGLE 215

Query: 145 ---VSWTVMLGGLLKDSRVEDARKLFDMMPVK-----DVVAVTNMIGGYCEEGRLEEARA 196
               S T  L    +   +   + + + +  K     DV   T ++  Y + G +E A  
Sbjct: 216 PDEFSVTTALTACAQVGALAQGKWIHEFVKKKSWIESDVFVGTALVDMYAKCGCIETAVE 275

Query: 197 LFDEMPKRNVVTWTTMVSGYA-------------RNRRVD-------------------- 223
           +F ++ +RNV +W  ++ GYA             R  R D                    
Sbjct: 276 VFKKLTRRNVFSWAALIGGYAAYGYAKKAMTCLERLEREDGIKPDSVVLLGVLAACAHGG 335

Query: 224 ---VARKLFEVMPERNEVS-----WTAMLMGYTHSGRMREASEFFDAMPVKPVVA 270
                R + E M  R E++     ++ ++     +GR+ +A    + MP+KP+ +
Sbjct: 336 FLEEGRSMLENMEARYEITPKHEHYSCIVDLMCRAGRLDDALNLIEKMPMKPLAS 390


>AT3G28660.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:10739400-10740914 REVERSE
           LENGTH=504
          Length = 504

 Score =  197 bits (500), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 132/461 (28%), Positives = 227/461 (49%), Gaps = 29/461 (6%)

Query: 173 KDVVAVTNMIGGYCEEGRLEE----ARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKL 228
           ++  A++ ++  +     L +    A ++FD +   N   + TM+   +R+ +  +  + 
Sbjct: 41  RNTYAISKLLTAFLHLPNLNKHFHYASSIFDSIEIPNSFVYDTMIRICSRSSQPHLGLRY 100

Query: 229 FEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMG-FGFDGDVDR- 286
           F +M +  E   T   + +         + FF    V   + C  +  G F  DG V   
Sbjct: 101 FLLMVKEEEEDITPSYLTFHFLIVACLKACFFS---VGKQIHCWVVKNGVFLSDGHVQTG 157

Query: 287 -------------AKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALN 333
                        A+ VF+++ + D   W  ++  Y R G   E L +F  M   G   +
Sbjct: 158 VLRIYVEDKLLFDARKVFDEIPQPDVVKWDVLMNGYVRCGLGSEGLEVFKEMLVRGIEPD 217

Query: 334 FPXXXXXXXXXXXXXXXDHGRQVHARLVRSEF-DQDLYVASALITMYVKCGDLVRAKWIF 392
                              G+ +H  + +  + + D++V +AL+ MY KCG +  A  +F
Sbjct: 218 EFSVTTALTACAQVGALAQGKWIHEFVKKKRWIESDVFVGTALVDMYAKCGCIETAVEVF 277

Query: 393 NRYPLKDVVMWNSMITGYSQHGLGEEALNVF-RDMCLSGVPPDDISFIGVLSACSYSGKV 451
            +   ++V  W ++I GY+ +G  ++A     R     G+ PD +  +GVL+AC++ G +
Sbjct: 278 EKLTRRNVFSWAALIGGYAAYGYAKKATTCLDRIEREDGIKPDSVVLLGVLAACAHGGFL 337

Query: 452 KEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLG 511
           +EGR + E+M+ +Y + P  EHY+C+VDL+ RAG+++DA++++EKMPM+P A VWG+LL 
Sbjct: 338 EEGRTMLENMEARYGITPKHEHYSCIVDLMCRAGRLDDALDLIEKMPMKPLASVWGALLN 397

Query: 512 ACRTHMKLDLAEVAVEKLAQLEPKNA----GPYVLLSHMYASKGRWEDVEVVREKIKTRS 567
            CRTH  ++L E+AV+ L  LE  N        V LS++Y S  R  +   VR  I+ R 
Sbjct: 398 GCRTHKNVELGELAVQNLLDLEKGNVEEEEAALVQLSNIYFSVQRNPEAFKVRGMIEQRG 457

Query: 568 VIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLD 608
           + K PG+S +EV+     FV GD + HP    I  ++  L 
Sbjct: 458 IRKTPGWSLLEVDGIVTKFVSGDVS-HPNLLQIHTLIHLLS 497



 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 114/242 (47%), Gaps = 25/242 (10%)

Query: 117 TSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVK--- 173
           T ++R YV++  + +A ++F  +P+ +VV W V++ G ++     +  ++F  M V+   
Sbjct: 156 TGVLRIYVEDKLLFDARKVFDEIPQPDVVKWDVLMNGYVRCGLGSEGLEVFKEMLVRGIE 215

Query: 174 -DVVAVTNMIGGYCEEGRLEEARALFDEMPKR-----NVVTWTTMVSGYARNRRVDVARK 227
            D  +VT  +    + G L + + + + + K+     +V   T +V  YA+   ++ A +
Sbjct: 216 PDEFSVTTALTACAQVGALAQGKWIHEFVKKKRWIESDVFVGTALVDMYAKCGCIETAVE 275

Query: 228 LFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMP----VKP-VVACNEMIMGFGFDG 282
           +FE +  RN  SW A++ GY   G  ++A+   D +     +KP  V    ++      G
Sbjct: 276 VFEKLTRRNVFSWAALIGGYAAYGYAKKATTCLDRIEREDGIKPDSVVLLGVLAACAHGG 335

Query: 283 DVDRAKAVFEKMRERDDGT-----WSAMIKVYERKGFELEALGLFARMQRE------GAA 331
            ++  + + E M  R   T     +S ++ +  R G   +AL L  +M  +      GA 
Sbjct: 336 FLEEGRTMLENMEARYGITPKHEHYSCIVDLMCRAGRLDDALDLIEKMPMKPLASVWGAL 395

Query: 332 LN 333
           LN
Sbjct: 396 LN 397



 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 106/245 (43%), Gaps = 22/245 (8%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKN 81
           TG +  Y     + +ARKVFDE P        W+ ++  Y +     + + +F+    + 
Sbjct: 156 TGVLRIYVEDKLLFDARKVFDEIP--QPDVVKWDVLMNGYVRCGLGSEGLEVFKEMLVRG 213

Query: 82  I----VSWNGMVSGFVKNGMVAEARRVFDAMPVR-----NVVSWTSMVRGYVQEGNVEEA 132
           I     S    ++   + G +A+ + + + +  +     +V   T++V  Y + G +E A
Sbjct: 214 IEPDEFSVTTALTACAQVGALAQGKWIHEFVKKKRWIESDVFVGTALVDMYAKCGCIETA 273

Query: 133 ERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVK-----DVVAVTNMIGGYCE 187
             +F ++  +NV SW  ++GG       + A    D +  +     D V +  ++     
Sbjct: 274 VEVFEKLTRRNVFSWAALIGGYAAYGYAKKATTCLDRIEREDGIKPDSVVLLGVLAACAH 333

Query: 188 EGRLEEARALFDEMPKRNVVT-----WTTMVSGYARNRRVDVARKLFEVMPERNEVS-WT 241
            G LEE R + + M  R  +T     ++ +V    R  R+D A  L E MP +   S W 
Sbjct: 334 GGFLEEGRTMLENMEARYGITPKHEHYSCIVDLMCRAGRLDDALDLIEKMPMKPLASVWG 393

Query: 242 AMLMG 246
           A+L G
Sbjct: 394 ALLNG 398



 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/300 (22%), Positives = 122/300 (40%), Gaps = 32/300 (10%)

Query: 142 KNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEM 201
           K +  W V  G  L D  V+                 T ++  Y E+  L +AR +FDE+
Sbjct: 136 KQIHCWVVKNGVFLSDGHVQ-----------------TGVLRIYVEDKLLFDARKVFDEI 178

Query: 202 PKRNVVTWTTMVSGYAR----NRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREAS 257
           P+ +VV W  +++GY R    +  ++V +++     E +E S T  L      G + +  
Sbjct: 179 PQPDVVKWDVLMNGYVRCGLGSEGLEVFKEMLVRGIEPDEFSVTTALTACAQVGALAQGK 238

Query: 258 EFFDAMPVK-----PVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERK 312
              + +  K      V     ++  +   G ++ A  VFEK+  R+  +W+A+I  Y   
Sbjct: 239 WIHEFVKKKRWIESDVFVGTALVDMYAKCGCIETAVEVFEKLTRRNVFSWAALIGGYAAY 298

Query: 313 GFELEALGLFARMQRE-GAALNFPXXXXXXXXXXXXXXXDHGRQVHARL-VRSEFDQDLY 370
           G+  +A     R++RE G   +                 + GR +   +  R        
Sbjct: 299 GYAKKATTCLDRIEREDGIKPDSVVLLGVLAACAHGGFLEEGRTMLENMEARYGITPKHE 358

Query: 371 VASALITMYVKCGDLVRAKWIFNRYPLKDVV-MWNSMITGYSQHG---LGEEALNVFRDM 426
             S ++ +  + G L  A  +  + P+K +  +W +++ G   H    LGE A+    D+
Sbjct: 359 HYSCIVDLMCRAGRLDDALDLIEKMPMKPLASVWGALLNGCRTHKNVELGELAVQNLLDL 418


>AT3G51320.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:19049853-19051445 REVERSE
           LENGTH=530
          Length = 530

 Score =  191 bits (485), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 108/358 (30%), Positives = 185/358 (51%), Gaps = 8/358 (2%)

Query: 230 EVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKA 289
           +V+P +N     +++  YT  G +  A + F  +P + +V+ N +I G   +GDV  A  
Sbjct: 151 QVLPVQN-----SLMHMYTCCGALDLAKKLFVEIPKRDIVSWNSIIAGMVRNGDVLAAHK 205

Query: 290 VFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXX 349
           +F++M +++  +W+ MI  Y        ++ LF  M R G   N                
Sbjct: 206 LFDEMPDKNIISWNIMISAYLGANNPGVSISLFREMVRAGFQGNESTLVLLLNACGRSAR 265

Query: 350 XDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITG 409
              GR VHA L+R+  +  + + +ALI MY KC ++  A+ IF+   +++ V WN MI  
Sbjct: 266 LKEGRSVHASLIRTFLNSSVVIDTALIDMYGKCKEVGLARRIFDSLSIRNKVTWNVMILA 325

Query: 410 YSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEP 469
           +  HG  E  L +F  M    + PD+++F+GVL  C+ +G V +G+  +  M  ++Q++P
Sbjct: 326 HCLHGRPEGGLELFEAMINGMLRPDEVTFVGVLCGCARAGLVSQGQSYYSLMVDEFQIKP 385

Query: 470 GIEHYACMVDLLGRAGQVNDAVEIVEKMPME---PDAIVWGSLLGACRTHMKLDLAEVAV 526
              H  CM +L   AG   +A E ++ +P E   P++  W +LL + R      L E   
Sbjct: 386 NFGHQWCMANLYSSAGFPEEAEEALKNLPDEDVTPESTKWANLLSSSRFTGNPTLGESIA 445

Query: 527 EKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAH 584
           + L + +P N   Y LL ++Y+  GRWEDV  VRE +K R + ++PG   +++++  H
Sbjct: 446 KSLIETDPLNYKYYHLLMNIYSVTGRWEDVNRVREMVKERKIGRIPGCGLVDLKEIVH 503



 Score = 98.2 bits (243), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 110/229 (48%), Gaps = 16/229 (6%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVV 114
           N+++  Y        A  LF   P+++IVSWN +++G V+NG V  A ++FD MP +N++
Sbjct: 157 NSLMHMYTCCGALDLAKKLFVEIPKRDIVSWNSIIAGMVRNGDVLAAHKLFDEMPDKNII 216

Query: 115 SWTSMVRGYVQEGNVEEAERLFWRMP----EKNVVSWTVMLGGLLKDSRVEDAR----KL 166
           SW  M+  Y+   N   +  LF  M     + N  +  ++L    + +R+++ R     L
Sbjct: 217 SWNIMISAYLGANNPGVSISLFREMVRAGFQGNESTLVLLLNACGRSARLKEGRSVHASL 276

Query: 167 FDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVAR 226
                   VV  T +I  Y +   +  AR +FD +  RN VTW  M+  +  + R +   
Sbjct: 277 IRTFLNSSVVIDTALIDMYGKCKEVGLARRIFDSLSIRNKVTWNVMILAHCLHGRPEGGL 336

Query: 227 KLFEVMPE----RNEVSWTAMLMGYTHSGRMREASEFF----DAMPVKP 267
           +LFE M       +EV++  +L G   +G + +   ++    D   +KP
Sbjct: 337 ELFEAMINGMLRPDEVTFVGVLCGCARAGLVSQGQSYYSLMVDEFQIKP 385



 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 104/243 (42%), Gaps = 33/243 (13%)

Query: 305 MIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSE 364
           + K Y       +ALG +  + R G   +                 D G+  H + ++  
Sbjct: 89  VFKAYLVSSSPKQALGFYFDILRFGFVPDSYTFVSLISCIEKTCCVDSGKMCHGQAIKHG 148

Query: 365 FDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHG---------- 414
            DQ L V ++L+ MY  CG L  AK +F   P +D+V WNS+I G  ++G          
Sbjct: 149 CDQVLPVQNSLMHMYTCCGALDLAKKLFVEIPKRDIVSWNSIIAGMVRNGDVLAAHKLFD 208

Query: 415 -----------------LGEE----ALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKE 453
                            LG      ++++FR+M  +G   ++ + + +L+AC  S ++KE
Sbjct: 209 EMPDKNIISWNIMISAYLGANNPGVSISLFREMVRAGFQGNESTLVLLLNACGRSARLKE 268

Query: 454 GREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGAC 513
           GR +  S+  +  +   +     ++D+ G+  +V  A  I + + +  + + W  ++ A 
Sbjct: 269 GRSVHASL-IRTFLNSSVVIDTALIDMYGKCKEVGLARRIFDSLSIR-NKVTWNVMILAH 326

Query: 514 RTH 516
             H
Sbjct: 327 CLH 329



 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 110/285 (38%), Gaps = 61/285 (21%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLF---------- 74
           I+   R G +  A K+FDE P   +   SWN M++AY  A+ P  +++LF          
Sbjct: 191 IAGMVRNGDVLAAHKLFDEMP--DKNIISWNIMISAYLGANNPGVSISLFREMVRAGFQG 248

Query: 75  -----------------------------ETTPEKNIVSWNGMVSGFVKNGMVAEARRVF 105
                                         T    ++V    ++  + K   V  ARR+F
Sbjct: 249 NESTLVLLLNACGRSARLKEGRSVHASLIRTFLNSSVVIDTALIDMYGKCKEVGLARRIF 308

Query: 106 DAMPVRNVVSWTSMVRGYV----QEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVE 161
           D++ +RN V+W  M+  +      EG +E  E +   M   + V++  +L G  +   V 
Sbjct: 309 DSLSIRNKVTWNVMILAHCLHGRPEGGLELFEAMINGMLRPDEVTFVGVLCGCARAGLVS 368

Query: 162 DARKLFDMMPVKDVVAVTN------MIGGYCEEGRLEEARALFDEMPKRNV----VTWTT 211
             +  + +M V +     N      M   Y   G  EEA      +P  +V      W  
Sbjct: 369 QGQSYYSLM-VDEFQIKPNFGHQWCMANLYSSAGFPEEAEEALKNLPDEDVTPESTKWAN 427

Query: 212 MVSG--YARNRRV--DVARKLFEVMPERNEVSWTAMLMGYTHSGR 252
           ++S   +  N  +   +A+ L E  P  N   +  ++  Y+ +GR
Sbjct: 428 LLSSSRFTGNPTLGESIAKSLIETDP-LNYKYYHLLMNIYSVTGR 471


>AT3G18970.1 | Symbols: MEF20 | mitochondrial editing factor  20 |
           chr3:6543699-6545117 REVERSE LENGTH=472
          Length = 472

 Score =  185 bits (470), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 113/314 (35%), Positives = 178/314 (56%), Gaps = 18/314 (5%)

Query: 281 DGDVDRAKAVFEKMRERDDGTWSAMIKVY---ERKGFE--LEALGLFARMQREGAALNFP 335
           +GD+  A+ VF++M ER   TW+AMI  Y   + KG     +A+ LF R    G+ +  P
Sbjct: 160 NGDLRYARKVFDEMPERTSVTWNAMIGGYCSHKDKGNHNARKAMVLFRRFSCCGSGVR-P 218

Query: 336 XXXXX---XXXXXXXXXXDHGRQVHARLVRSEF--DQDLYVASALITMYVKCGDLVRAKW 390
                             + G  VH  + +  F  + D+++ +AL+ MY KCG L  A  
Sbjct: 219 TDTTMVCVLSAISQTGLLEIGSLVHGYIEKLGFTPEVDVFIGTALVDMYSKCGCLNNAFS 278

Query: 391 IFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGK 450
           +F    +K+V  W SM TG + +G G E  N+   M  SG+ P++I+F  +LSA  + G 
Sbjct: 279 VFELMKVKNVFTWTSMATGLALNGRGNETPNLLNRMAESGIKPNEITFTSLLSAYRHIGL 338

Query: 451 VKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLL 510
           V+EG E+F+SMK ++ V P IEHY C+VDLLG+AG++ +A + +  MP++PDAI+  SL 
Sbjct: 339 VEEGIELFKSMKTRFGVTPVIEHYGCIVDLLGKAGRIQEAYQFILAMPIKPDAILLRSLC 398

Query: 511 GACRTHMKLDLAEVAVEKLAQLE---PKNAGP----YVLLSHMYASKGRWEDVEVVREKI 563
            AC  + +  + E   + L ++E    K +G     YV LS++ A KG+W +VE +R+++
Sbjct: 399 NACSIYGETVMGEEIGKALLEIEREDEKLSGSECEDYVALSNVLAHKGKWVEVEKLRKEM 458

Query: 564 KTRSVIKLPGYSWI 577
           K R +   PGYS++
Sbjct: 459 KERRIKTRPGYSFV 472



 Score = 87.4 bits (215), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 92/203 (45%), Gaps = 25/203 (12%)

Query: 92  FVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEG-----NVEEAERLFWRM------- 139
           + KNG +  AR+VFD MP R  V+W +M+ GY         N  +A  LF R        
Sbjct: 157 YAKNGDLRYARKVFDEMPERTSVTWNAMIGGYCSHKDKGNHNARKAMVLFRRFSCCGSGV 216

Query: 140 -PEKN----VVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEA 194
            P       V+S     G L   S V    +     P  DV   T ++  Y + G L  A
Sbjct: 217 RPTDTTMVCVLSAISQTGLLEIGSLVHGYIEKLGFTPEVDVFIGTALVDMYSKCGCLNNA 276

Query: 195 RALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHS 250
            ++F+ M  +NV TWT+M +G A N R +    L   M E     NE+++T++L  Y H 
Sbjct: 277 FSVFELMKVKNVFTWTSMATGLALNGRGNETPNLLNRMAESGIKPNEITFTSLLSAYRHI 336

Query: 251 GRMREASEFFDAMP----VKPVV 269
           G + E  E F +M     V PV+
Sbjct: 337 GLVEEGIELFKSMKTRFGVTPVI 359



 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 109/276 (39%), Gaps = 67/276 (24%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQ-----AHQPHQAVTLF-- 74
           T  +  YA+ G +  ARKVFDE P   RT+ +WNAM+  Y        H   +A+ LF  
Sbjct: 151 TTLLHFYAKNGDLRYARKVFDEMP--ERTSVTWNAMIGGYCSHKDKGNHNARKAMVLFRR 208

Query: 75  -----------ETT--------PEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVS 115
                      +TT         +  ++    +V G+++              P  +V  
Sbjct: 209 FSCCGSGVRPTDTTMVCVLSAISQTGLLEIGSLVHGYIEK---------LGFTPEVDVFI 259

Query: 116 WTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDV 175
            T++V  Y + G +  A  +F  M  KNV +WT M  GL  + R  +   L + M    +
Sbjct: 260 GTALVDMYSKCGCLNNAFSVFELMKVKNVFTWTSMATGLALNGRGNETPNLLNRMAESGI 319

Query: 176 ----VAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEV 231
               +  T+++  Y   G +EE   LF  M  R                        F V
Sbjct: 320 KPNEITFTSLLSAYRHIGLVEEGIELFKSMKTR------------------------FGV 355

Query: 232 MPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKP 267
            P          L+G   +GR++EA +F  AMP+KP
Sbjct: 356 TPVIEHYGCIVDLLG--KAGRIQEAYQFILAMPIKP 389



 Score = 69.7 bits (169), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 86/168 (51%), Gaps = 14/168 (8%)

Query: 353 GRQVHARLVRSEF--DQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGY 410
           GR VH  + +  F  + +L + + L+  Y K GDL  A+ +F+  P +  V WN+MI GY
Sbjct: 130 GRIVHGMVKKLGFLYESEL-IGTTLLHFYAKNGDLRYARKVFDEMPERTSVTWNAMIGGY 188

Query: 411 SQHG-----LGEEALNVFR--DMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKC 463
             H         +A+ +FR    C SGV P D + + VLSA S +G ++ G  +   ++ 
Sbjct: 189 CSHKDKGNHNARKAMVLFRRFSCCGSGVRPTDTTMVCVLSAISQTGLLEIGSLVHGYIE- 247

Query: 464 KYQVEPGIEHY--ACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSL 509
           K    P ++ +    +VD+  + G +N+A  + E M ++ +   W S+
Sbjct: 248 KLGFTPEVDVFIGTALVDMYSKCGCLNNAFSVFELMKVK-NVFTWTSM 294



 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 76/200 (38%), Gaps = 52/200 (26%)

Query: 179 TNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYA--RNRRVDVARK--------- 227
           T ++  Y + G L  AR +FDEMP+R  VTW  M+ GY   +++    ARK         
Sbjct: 151 TTLLHFYAKNGDLRYARKVFDEMPERTSVTWNAMIGGYCSHKDKGNHNARKAMVLFRRFS 210

Query: 228 ------------------------LFEV-------------MPERNEVSWTAMLMGYTHS 250
                                   L E+              PE +    TA++  Y+  
Sbjct: 211 CCGSGVRPTDTTMVCVLSAISQTGLLEIGSLVHGYIEKLGFTPEVDVFIGTALVDMYSKC 270

Query: 251 GRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRER----DDGTWSAMI 306
           G +  A   F+ M VK V     M  G   +G  +    +  +M E     ++ T+++++
Sbjct: 271 GCLNNAFSVFELMKVKNVFTWTSMATGLALNGRGNETPNLLNRMAESGIKPNEITFTSLL 330

Query: 307 KVYERKGFELEALGLFARMQ 326
             Y   G   E + LF  M+
Sbjct: 331 SAYRHIGLVEEGIELFKSMK 350


>AT4G14170.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:8176709-8178142 REVERSE
           LENGTH=477
          Length = 477

 Score =  184 bits (467), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 108/415 (26%), Positives = 214/415 (51%), Gaps = 11/415 (2%)

Query: 173 KDVVAVTNMIGGYCEEGRL-EEARALFDEMPKRNVVTWTTMVSGYARN----RRVDVARK 227
            +VV  + ++  Y +   L   + ++F  MP RN+ +W  ++  ++R+    + +D+  +
Sbjct: 64  SNVVLSSKLVLAYSKLNHLFPTSLSVFWHMPYRNIFSWNIIIGEFSRSGFASKSIDLFLR 123

Query: 228 LFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVK-----PVVACNEMIMGFGFDG 282
           ++     R +     +++    + R  ++ +    + +K      +   + +++ +   G
Sbjct: 124 MWRESCVRPDDFTLPLILRACSASREAKSGDLIHVLCLKLGFSSSLFVSSALVIMYVDMG 183

Query: 283 DVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXX 342
            +  A+ +F+ M  RD   ++AM   Y ++G  +  L +F  M   G AL+         
Sbjct: 184 KLLHARKLFDDMPVRDSVLYTAMFGGYVQQGEAMLGLAMFREMGYSGFALDSVVMVSLLM 243

Query: 343 XXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVM 402
                    HG+ VH   +R      L + +A+  MYVKC  L  A  +F     +DV+ 
Sbjct: 244 ACGQLGALKHGKSVHGWCIRRCSCLGLNLGNAITDMYVKCSILDYAHTVFVNMSRRDVIS 303

Query: 403 WNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMK 462
           W+S+I GY   G    +  +F +M   G+ P+ ++F+GVLSAC++ G V++    F  M+
Sbjct: 304 WSSLILGYGLDGDVVMSFKLFDEMLKEGIEPNAVTFLGVLSACAHGGLVEKSWLYFRLMQ 363

Query: 463 CKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLA 522
            +Y + P ++HYA + D + RAG + +A + +E MP++PD  V G++L  C+ +  +++ 
Sbjct: 364 -EYNIVPELKHYASVADCMSRAGLLEEAEKFLEDMPVKPDEAVMGAVLSGCKVYGNVEVG 422

Query: 523 EVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWI 577
           E    +L QL+P+ A  YV L+ +Y++ GR+++ E +R+ +K + + K+PG S I
Sbjct: 423 ERVARELIQLKPRKASYYVTLAGLYSAAGRFDEAESLRQWMKEKQISKVPGCSSI 477



 Score = 80.5 bits (197), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 100/441 (22%), Positives = 170/441 (38%), Gaps = 78/441 (17%)

Query: 80  KNIVSWNGMVSGFVK-NGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWR 138
            N+V  + +V  + K N +   +  VF  MP RN+ SW  ++  + + G   ++  LF R
Sbjct: 64  SNVVLSSKLVLAYSKLNHLFPTSLSVFWHMPYRNIFSWNIIIGEFSRSGFASKSIDLFLR 123

Query: 139 MPEKNVV---SWTVMLGGLLKDSRVEDARKLFDMMPV--------KDVVAVTNMIGGYCE 187
           M  ++ V    +T+ L  +L+        K  D++ V          +   + ++  Y +
Sbjct: 124 MWRESCVRPDDFTLPL--ILRACSASREAKSGDLIHVLCLKLGFSSSLFVSSALVIMYVD 181

Query: 188 EGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMP----ERNEVSWTAM 243
            G+L  AR LFD+MP R+ V +T M  GY +     +   +F  M       + V   ++
Sbjct: 182 MGKLLHARKLFDDMPVRDSVLYTAMFGGYVQQGEAMLGLAMFREMGYSGFALDSVVMVSL 241

Query: 244 LMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFD------GDVDRAKAVFEKMRER 297
           LM     G ++           +   +C  + +G            +D A  VF  M  R
Sbjct: 242 LMACGQLGALKHGKSVHGWCIRR--CSCLGLNLGNAITDMYVKCSILDYAHTVFVNMSRR 299

Query: 298 DDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVH 357
           D  +WS++I  Y   G  + +  LF  M +EG   N                        
Sbjct: 300 DVISWSSLILGYGLDGDVVMSFKLFDEMLKEGIEPN------------------------ 335

Query: 358 ARLVRSEFDQDLYVASALITMYVKC--GDLVRAKWIFNRY-----PLKDVVMWNSMITGY 410
                         A   + +   C  G LV   W++ R       + ++  + S+    
Sbjct: 336 --------------AVTFLGVLSACAHGGLVEKSWLYFRLMQEYNIVPELKHYASVADCM 381

Query: 411 SQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEP- 469
           S+ GL EEA     DM    V PD+     VLS C   G V+ G  +   +    Q++P 
Sbjct: 382 SRAGLLEEAEKFLEDM---PVKPDEAVMGAVLSGCKVYGNVEVGERVAREL---IQLKPR 435

Query: 470 GIEHYACMVDLLGRAGQVNDA 490
              +Y  +  L   AG+ ++A
Sbjct: 436 KASYYVTLAGLYSAAGRFDEA 456



 Score = 63.9 bits (154), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 122/302 (40%), Gaps = 57/302 (18%)

Query: 20  TSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFE---- 75
            S+  +  Y  +G++ +ARK+FD+ P   R +  + AM   Y Q  +    + +F     
Sbjct: 171 VSSALVIMYVDMGKLLHARKLFDDMPV--RDSVLYTAMFGGYVQQGEAMLGLAMFREMGY 228

Query: 76  ----------------------TTPEKNIVSW-------------NGMVSGFVKNGMVAE 100
                                     K++  W             N +   +VK  ++  
Sbjct: 229 SGFALDSVVMVSLLMACGQLGALKHGKSVHGWCIRRCSCLGLNLGNAITDMYVKCSILDY 288

Query: 101 ARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM----PEKNVVSWTVMLGGLLK 156
           A  VF  M  R+V+SW+S++ GY  +G+V  + +LF  M     E N V++  +L     
Sbjct: 289 AHTVFVNMSRRDVISWSSLILGYGLDGDVVMSFKLFDEMLKEGIEPNAVTFLGVLSACAH 348

Query: 157 DSRVEDARKLFDMMPVKDVVA----VTNMIGGYCEEGRLEEARALFDEMP-KRNVVTWTT 211
              VE +   F +M   ++V       ++       G LEEA    ++MP K +      
Sbjct: 349 GGLVEKSWLYFRLMQEYNIVPELKHYASVADCMSRAGLLEEAEKFLEDMPVKPDEAVMGA 408

Query: 212 MVSGYARNRRVD----VARKLFEVMPERNEVSWTAMLMG-YTHSGRMREASEFFDAMPVK 266
           ++SG      V+    VAR+L ++ P +   S+   L G Y+ +GR  EA      M  K
Sbjct: 409 VLSGCKVYGNVEVGERVARELIQLKPRK--ASYYVTLAGLYSAAGRFDEAESLRQWMKEK 466

Query: 267 PV 268
            +
Sbjct: 467 QI 468



 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 111/246 (45%), Gaps = 24/246 (9%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVR--- 111
           +A+V  Y    +   A  LF+  P ++ V +  M  G+V+ G       +F  M      
Sbjct: 173 SALVIMYVDMGKLLHARKLFDDMPVRDSVLYTAMFGGYVQQGEAMLGLAMFREMGYSGFA 232

Query: 112 -NVVSWTSMVRGYVQEGNVEEAERLF-WRMPEKNVVSWTVMLGGLLKD-----SRVEDAR 164
            + V   S++    Q G ++  + +  W +   + +     LG  + D     S ++ A 
Sbjct: 233 LDSVVMVSLLMACGQLGALKHGKSVHGWCIRRCSCLGLN--LGNAITDMYVKCSILDYAH 290

Query: 165 KLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNR 220
            +F  M  +DV++ +++I GY  +G +  +  LFDEM K     N VT+  ++S  A   
Sbjct: 291 TVFVNMSRRDVISWSSLILGYGLDGDVVMSFKLFDEMLKEGIEPNAVTFLGVLSACAHGG 350

Query: 221 RVDVARKLFEVMPERNEVS----WTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIM 276
            V+ +   F +M E N V     + ++    + +G + EA +F + MPVKP    +E +M
Sbjct: 351 LVEKSWLYFRLMQEYNIVPELKHYASVADCMSRAGLLEEAEKFLEDMPVKP----DEAVM 406

Query: 277 GFGFDG 282
           G    G
Sbjct: 407 GAVLSG 412


>AT2G36730.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:15405068-15406573 REVERSE
           LENGTH=501
          Length = 501

 Score =  184 bits (466), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 122/413 (29%), Positives = 204/413 (49%), Gaps = 18/413 (4%)

Query: 191 LEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAML-- 244
           L  AR L          TW  +  GY+ +     +  ++  M  R    N++++  +L  
Sbjct: 63  LAFARTLLLHSSDSTPSTWNMLSRGYSSSDSPVESIWVYSEMKRRGIKPNKLTFPFLLKA 122

Query: 245 ----MGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDG 300
               +G T +GR  +             V  N +I  +G       A+ VF++M ER+  
Sbjct: 123 CASFLGLT-AGRQIQVEVLKHGFDFDVYVG-NNLIHLYGTCKKTSDARKVFDEMTERNVV 180

Query: 301 TWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARL 360
           +W++++      G        F  M   G                       G+ VH+++
Sbjct: 181 SWNSIMTALVENGKLNLVFECFCEMI--GKRFCPDETTMVVLLSACGGNLSLGKLVHSQV 238

Query: 361 VRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEAL 420
           +  E + +  + +AL+ MY K G L  A+ +F R   K+V  W++MI G +Q+G  EEAL
Sbjct: 239 MVRELELNCRLGTALVDMYAKSGGLEYARLVFERMVDKNVWTWSAMIVGLAQYGFAEEAL 298

Query: 421 NVFRDMCL-SGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVD 479
            +F  M   S V P+ ++F+GVL ACS++G V +G + F  M+  ++++P + HY  MVD
Sbjct: 299 QLFSKMMKESSVRPNYVTFLGVLCACSHTGLVDDGYKYFHEMEKIHKIKPMMIHYGAMVD 358

Query: 480 LLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLD---LAEVAVEKLAQLEPKN 536
           +LGRAG++N+A + ++KMP EPDA+VW +LL AC  H   D   + E   ++L +LEPK 
Sbjct: 359 ILGRAGRLNEAYDFIKKMPFEPDAVVWRTLLSACSIHHDEDDEGIGEKVKKRLIELEPKR 418

Query: 537 AGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGG 589
           +G  V++++ +A    W +   VR  +K   + K+ G S +E+    H F  G
Sbjct: 419 SGNLVIVANRFAEARMWAEAAEVRRVMKETKMKKIAGESCLELGGSFHRFFSG 471



 Score = 76.6 bits (187), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 84/380 (22%), Positives = 160/380 (42%), Gaps = 31/380 (8%)

Query: 66  QPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQ 125
           Q H  + L     +  I+S    VS       +A AR +          +W  + RGY  
Sbjct: 31  QIHGQIHLSSLQNDSFIISELVRVSSLSLAKDLAFARTLLLHSSDSTPSTWNMLSRGYSS 90

Query: 126 EGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDS------------RVEDARKLFDMMPVK 173
             +  E+  ++  M  + +    +    LLK              +VE  +  FD     
Sbjct: 91  SDSPVESIWVYSEMKRRGIKPNKLTFPFLLKACASFLGLTAGRQIQVEVLKHGFDF---- 146

Query: 174 DVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLF-EVM 232
           DV    N+I  Y    +  +AR +FDEM +RNVV+W ++++    N ++++  + F E++
Sbjct: 147 DVYVGNNLIHLYGTCKKTSDARKVFDEMTERNVVSWNSIMTALVENGKLNLVFECFCEMI 206

Query: 233 PERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACN-----EMIMGFGFDGDVDRA 287
            +R     T M++  +  G      +   +  +   +  N      ++  +   G ++ A
Sbjct: 207 GKRFCPDETTMVVLLSACGGNLSLGKLVHSQVMVRELELNCRLGTALVDMYAKSGGLEYA 266

Query: 288 KAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAAL-NFPXXXXXXXXXXX 346
           + VFE+M +++  TWSAMI    + GF  EAL LF++M +E +   N+            
Sbjct: 267 RLVFERMVDKNVWTWSAMIVGLAQYGFAEEALQLFSKMMKESSVRPNYVTFLGVLCACSH 326

Query: 347 XXXXDHGRQVHARLVRSEFDQDLYVA-SALITMYVKCGDLVRAKWIFNRYPLK-DVVMWN 404
               D G +    + +    + + +   A++ +  + G L  A     + P + D V+W 
Sbjct: 327 TGLVDDGYKYFHEMEKIHKIKPMMIHYGAMVDILGRAGRLNEAYDFIKKMPFEPDAVVWR 386

Query: 405 SMITGYSQH------GLGEE 418
           ++++  S H      G+GE+
Sbjct: 387 TLLSACSIHHDEDDEGIGEK 406



 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 104/228 (45%), Gaps = 4/228 (1%)

Query: 283 DVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXX 342
           D+  A+ +     +    TW+ + + Y      +E++ +++ M+R G   N         
Sbjct: 62  DLAFARTLLLHSSDSTPSTWNMLSRGYSSSDSPVESIWVYSEMKRRGIKPNKLTFPFLLK 121

Query: 343 XXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVM 402
                     GRQ+   +++  FD D+YV + LI +Y  C     A+ +F+    ++VV 
Sbjct: 122 ACASFLGLTAGRQIQVEVLKHGFDFDVYVGNNLIHLYGTCKKTSDARKVFDEMTERNVVS 181

Query: 403 WNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMK 462
           WNS++T   ++G        F +M      PD+ + + +LSAC   G +  G+ +   + 
Sbjct: 182 WNSIMTALVENGKLNLVFECFCEMIGKRFCPDETTMVVLLSAC--GGNLSLGKLVHSQVM 239

Query: 463 CKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLL 510
            + ++E        +VD+  ++G +  A  + E+M ++ +   W +++
Sbjct: 240 VR-ELELNCRLGTALVDMYAKSGGLEYARLVFERM-VDKNVWTWSAMI 285



 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 102/230 (44%), Gaps = 18/230 (7%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVR--- 111
           N ++  Y    +   A  +F+   E+N+VSWN +++  V+NG +      F  M  +   
Sbjct: 152 NNLIHLYGTCKKTSDARKVFDEMTERNVVSWNSIMTALVENGKLNLVFECFCEMIGKRFC 211

Query: 112 ----NVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLF 167
                +V   S   G +  G +  ++ +  R  E N    T ++    K   +E AR +F
Sbjct: 212 PDETTMVVLLSACGGNLSLGKLVHSQVMV-RELELNCRLGTALVDMYAKSGGLEYARLVF 270

Query: 168 DMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKR-----NVVTWTTMVSGYARNRRV 222
           + M  K+V   + MI G  + G  EEA  LF +M K      N VT+  ++   +    V
Sbjct: 271 ERMVDKNVWTWSAMIVGLAQYGFAEEALQLFSKMMKESSVRPNYVTFLGVLCACSHTGLV 330

Query: 223 DVARKLFEVMPERNEVS-----WTAMLMGYTHSGRMREASEFFDAMPVKP 267
           D   K F  M + +++      + AM+     +GR+ EA +F   MP +P
Sbjct: 331 DDGYKYFHEMEKIHKIKPMMIHYGAMVDILGRAGRLNEAYDFIKKMPFEP 380



 Score = 65.9 bits (159), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 116/270 (42%), Gaps = 63/270 (23%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLF---------- 74
           I  Y    +  +ARKVFDE     R   SWN+++ A  +  + +     F          
Sbjct: 155 IHLYGTCKKTSDARKVFDEMTE--RNVVSWNSIMTALVENGKLNLVFECFCEMIGKRFCP 212

Query: 75  -ETT--------------------------PEKNIVSWNGMVSGFVKNGMVAEARRVFDA 107
            ETT                           E N      +V  + K+G +  AR VF+ 
Sbjct: 213 DETTMVVLLSACGGNLSLGKLVHSQVMVRELELNCRLGTALVDMYAKSGGLEYARLVFER 272

Query: 108 MPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVV--SWTVMLGGLLKDSR---VED 162
           M  +NV +W++M+ G  Q G  EEA +LF +M +++ V  ++   LG L   S    V+D
Sbjct: 273 MVDKNVWTWSAMIVGLAQYGFAEEALQLFSKMMKESSVRPNYVTFLGVLCACSHTGLVDD 332

Query: 163 ARKLFDMM----PVKDVV----AVTNMIGGYCEEGRLEEARALFDEMP-KRNVVTWTTMV 213
             K F  M     +K ++    A+ +++G     GRL EA     +MP + + V W T++
Sbjct: 333 GYKYFHEMEKIHKIKPMMIHYGAMVDILG---RAGRLNEAYDFIKKMPFEPDAVVWRTLL 389

Query: 214 SGYARNRRVD-------VARKLFEVMPERN 236
           S  + +   D       V ++L E+ P+R+
Sbjct: 390 SACSIHHDEDDEGIGEKVKKRLIELEPKRS 419


>AT1G23450.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:8324698-8326697 FORWARD
           LENGTH=666
          Length = 666

 Score =  181 bits (459), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 123/505 (24%), Positives = 235/505 (46%), Gaps = 20/505 (3%)

Query: 97  MVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMP----EKNVVSWTVMLG 152
           +V  A ++FD M  RN+     ++R + Q G  +    ++ RM      KN +++  M+ 
Sbjct: 162 LVDVALKLFDEMLDRNLAVCNLLLRCFCQTGESKRLFEVYLRMELEGVAKNGLTYCYMIR 221

Query: 153 GLLKDSRVEDARKLFDMM-----PVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVV 207
           G   D  V + ++L  ++      + ++     ++  Y   G L  +   F+ +P+++V+
Sbjct: 222 GCSHDRLVYEGKQLHSLVVKSGWNISNIFVANVLVDYYSACGDLSGSMRSFNAVPEKDVI 281

Query: 208 TWTTMVSGYARNRRVDVARKLFEVMP---ERNEVSWTAMLMGYT------HSGRMREASE 258
           +W ++VS  A    V  +  LF  M    +R  +      + +        SG+      
Sbjct: 282 SWNSIVSVCADYGSVLDSLDLFSKMQFWGKRPSIRPFMSFLNFCSRNSDIQSGKQIHCYV 341

Query: 259 FFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEA 318
                 V  +   + +I  +G    ++ +  +++ +   +    ++++      G   + 
Sbjct: 342 LKMGFDVSSLHVQSALIDMYGKCNGIENSALLYQSLPCLNLECCNSLMTSLMHCGITKDI 401

Query: 319 LGLFARMQREGAALNFPXXXXXXXXXXXXX--XXDHGRQVHARLVRSEFDQDLYVASALI 376
           + +F  M  EG  ++                        VH   ++S +  D+ V+ +LI
Sbjct: 402 IEMFGLMIDEGTGIDEVTLSTVLKALSLSLPESLHSCTLVHCCAIKSGYAADVAVSCSLI 461

Query: 377 TMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDI 436
             Y K G    ++ +F+     ++    S+I GY+++G+G + + + R+M    + PD++
Sbjct: 462 DAYTKSGQNEVSRKVFDELDTPNIFCLTSIINGYARNGMGTDCVKMLREMDRMNLIPDEV 521

Query: 437 SFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEK 496
           + + VLS CS+SG V+EG  IF+S++ KY + PG + YACMVDLLGRAG V  A  ++ +
Sbjct: 522 TILSVLSGCSHSGLVEEGELIFDSLESKYGISPGRKLYACMVDLLGRAGLVEKAERLLLQ 581

Query: 497 MPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDV 556
              + D + W SLL +CR H    +   A E L  LEP+N   Y+ +S  Y   G +E  
Sbjct: 582 ARGDADCVAWSSLLQSCRIHRNETIGRRAAEVLMNLEPENFAVYIQVSKFYFEIGDFEIS 641

Query: 557 EVVREKIKTRSVIKLPGYSWIEVEK 581
             +RE   +R +++  GYS + V+ 
Sbjct: 642 RQIREIAASRELMREIGYSSVVVKN 666



 Score =  103 bits (256), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 100/503 (19%), Positives = 203/503 (40%), Gaps = 69/503 (13%)

Query: 72  TLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEE 131
           +  E  P   + + N  +   +K+G +  A   FD M VR+VV++  ++ G  + G    
Sbjct: 36  SFLEENPSDLVYTHNRRIDELIKSGNLLSAHEAFDEMSVRDVVTYNLLISGNSRYGCSLR 95

Query: 132 AERLFWRMPEKNV--------VSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIG 183
           A  L+  M    +           +V    L     ++   ++  +    ++   + ++G
Sbjct: 96  AIELYAEMVSCGLRESASTFPSVLSVCSDELFCREGIQVHCRVISLGFGCNMFVRSALVG 155

Query: 184 GYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPE-------RN 236
            Y     ++ A  LFDEM  RN+     ++  + +      +++LFEV          +N
Sbjct: 156 LYACLRLVDVALKLFDEMLDRNLAVCNLLLRCFCQTGE---SKRLFEVYLRMELEGVAKN 212

Query: 237 EVSWTAMLMGYTHSGRMREASEFFDAM-----PVKPVVACNEMIMGFGFDGDVDRAKAVF 291
            +++  M+ G +H   + E  +    +      +  +   N ++  +   GD+  +   F
Sbjct: 213 GLTYCYMIRGCSHDRLVYEGKQLHSLVVKSGWNISNIFVANVLVDYYSACGDLSGSMRSF 272

Query: 292 EKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXD 351
             + E+D  +W++++ V    G  L++L LF++MQ  G   +                  
Sbjct: 273 NAVPEKDVISWNSIVSVCADYGSVLDSLDLFSKMQFWGKRPSIRPFMSFLNFCSRNSDIQ 332

Query: 352 HGRQVHARLVRSEFD-QDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGY 410
            G+Q+H  +++  FD   L+V SALI MY KC  +  +  ++   P  ++   NS++T  
Sbjct: 333 SGKQIHCYVLKMGFDVSSLHVQSALIDMYGKCNGIENSALLYQSLPCLNLECCNSLMTSL 392

Query: 411 SQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSA-------------------------- 444
              G+ ++ + +F  M   G   D+++   VL A                          
Sbjct: 393 MHCGITKDIIEMFGLMIDEGTGIDEVTLSTVLKALSLSLPESLHSCTLVHCCAIKSGYAA 452

Query: 445 -----CSY------SGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEI 493
                CS       SG+ +  R++F+ +       P I     +++   R G   D V++
Sbjct: 453 DVAVSCSLIDAYTKSGQNEVSRKVFDELD-----TPNIFCLTSIINGYARNGMGTDCVKM 507

Query: 494 V---EKMPMEPDAIVWGSLLGAC 513
           +   ++M + PD +   S+L  C
Sbjct: 508 LREMDRMNLIPDEVTILSVLSGC 530



 Score = 69.7 bits (169), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 69/346 (19%), Positives = 132/346 (38%), Gaps = 95/346 (27%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAM------ 108
           N +V  Y        ++  F   PEK+++SWN +VS     G V ++  +F  M      
Sbjct: 253 NVLVDYYSACGDLSGSMRSFNAVPEKDVISWNSIVSVCADYGSVLDSLDLFSKMQFWGKR 312

Query: 109 -PVRNVVSW---------------------------------TSMVRGYVQEGNVEEAER 134
             +R  +S+                                 ++++  Y +   +E +  
Sbjct: 313 PSIRPFMSFLNFCSRNSDIQSGKQIHCYVLKMGFDVSSLHVQSALIDMYGKCNGIENSAL 372

Query: 135 LFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMP----------------------- 171
           L+  +P  N+     ++  L+     +D  ++F +M                        
Sbjct: 373 LYQSLPCLNLECCNSLMTSLMHCGITKDIIEMFGLMIDEGTGIDEVTLSTVLKALSLSLP 432

Query: 172 ------------------VKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMV 213
                               DV    ++I  Y + G+ E +R +FDE+   N+   T+++
Sbjct: 433 ESLHSCTLVHCCAIKSGYAADVAVSCSLIDAYTKSGQNEVSRKVFDELDTPNIFCLTSII 492

Query: 214 SGYARNRRVDVARKLFEVMPERN----EVSWTAMLMGYTHSGRMREASEFFDAM------ 263
           +GYARN       K+   M   N    EV+  ++L G +HSG + E    FD++      
Sbjct: 493 NGYARNGMGTDCVKMLREMDRMNLIPDEVTILSVLSGCSHSGLVEEGELIFDSLESKYGI 552

Query: 264 -PVKPVVACNEMIMGFGFDGDVDRAKAVFEKMR-ERDDGTWSAMIK 307
            P + + AC  M+   G  G V++A+ +  + R + D   WS++++
Sbjct: 553 SPGRKLYAC--MVDLLGRAGLVEKAERLLLQARGDADCVAWSSLLQ 596


>AT3G58590.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:21666262-21668487 FORWARD
           LENGTH=741
          Length = 741

 Score =  177 bits (450), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 141/580 (24%), Positives = 242/580 (41%), Gaps = 94/580 (16%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAA------------YFQ------ 63
           T  +  Y R+  +E A +VF++ P   ++  +WN M++             +F+      
Sbjct: 153 TCLLCLYGRLDLLEMAEQVFEDMPF--KSLETWNHMMSLLGHRGFLKECMFFFRELVRMG 210

Query: 64  -----------------------AHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAE 100
                                  + Q H + T      E ++V  N ++S + K G    
Sbjct: 211 ASLTESSFLGVLKGVSCVKDLDISKQLHCSATKKGLDCEISVV--NSLISAYGKCGNTHM 268

Query: 101 ARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEK----NVVSWTVMLGGLLK 156
           A R+F      ++VSW +++    +  N  +A +LF  MPE     N  ++  +LG    
Sbjct: 269 AERMFQDAGSWDIVSWNAIICATAKSENPLKALKLFVSMPEHGFSPNQGTYVSVLGVSSL 328

Query: 157 DSRVEDARKLFDMMPVKD-----VVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTT 211
              +   R++  M+ +K+     +V    +I  Y + G LE++R  FD +  +N+V W  
Sbjct: 329 VQLLSCGRQIHGML-IKNGCETGIVLGNALIDFYAKCGNLEDSRLCFDYIRDKNIVCWNA 387

Query: 212 MVSGYARNRRVDVARKLFEVMP-----------------------------------ERN 236
           ++SGYA N+   +   LF  M                                    E N
Sbjct: 388 LLSGYA-NKDGPICLSLFLQMLQMGFRPTEYTFSTALKSCCVTELQQLHSVIVRMGYEDN 446

Query: 237 EVSWTAMLMGYTHSGRMREASEFFD-AMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMR 295
           +   ++++  Y  +  M +A    D A     VV  N +   +   G    +  +   + 
Sbjct: 447 DYVLSSLMRSYAKNQLMNDALLLLDWASGPTSVVPLNIVAGIYSRRGQYHESVKLISTLE 506

Query: 296 ERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQ 355
           + D  +W+  I    R  +  E + LF  M +     +                   G  
Sbjct: 507 QPDTVSWNIAIAACSRSDYHEEVIELFKHMLQSNIRPDKYTFVSILSLCSKLCDLTLGSS 566

Query: 356 VHARLVRSEFD-QDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHG 414
           +H  + +++F   D +V + LI MY KCG +     +F     K+++ W ++I+    HG
Sbjct: 567 IHGLITKTDFSCADTFVCNVLIDMYGKCGSIRSVMKVFEETREKNLITWTALISCLGIHG 626

Query: 415 LGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHY 474
            G+EAL  F++    G  PD +SFI +L+AC + G VKEG  +F+ MK  Y VEP ++HY
Sbjct: 627 YGQEALEKFKETLSLGFKPDRVSFISILTACRHGGMVKEGMGLFQKMK-DYGVEPEMDHY 685

Query: 475 ACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACR 514
            C VDLL R G + +A  ++ +MP   DA VW + L  C 
Sbjct: 686 RCAVDLLARNGYLKEAEHLIREMPFPADAPVWRTFLDGCN 725



 Score =  134 bits (337), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 119/500 (23%), Positives = 217/500 (43%), Gaps = 55/500 (11%)

Query: 86  NGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEA------ERLFWRM 139
           N ++S + K G V+ A +VFD MP RN VS+ ++++GY + G+V++A       R F  +
Sbjct: 53  NNIISLYEKLGEVSLAGKVFDQMPERNKVSFNTIIKGYSKYGDVDKAWGVFSEMRYFGYL 112

Query: 140 PEKNVVSWTVMLGGLLKDSRVEDARKLFDM---MPVKDVVAVTNMIGGYCEEGRLEEARA 196
           P ++ VS  +    L  D R         +   + + D    T ++  Y     LE A  
Sbjct: 113 PNQSTVSGLLSCASL--DVRAGTQLHGLSLKYGLFMADAFVGTCLLCLYGRLDLLEMAEQ 170

Query: 197 LFDEMPKRNVVTWTTMVS-----GYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSG 251
           +F++MP +++ TW  M+S     G+ +       R+L  +     E S+  +L G +   
Sbjct: 171 VFEDMPFKSLETWNHMMSLLGHRGFLKECMF-FFRELVRMGASLTESSFLGVLKGVSCVK 229

Query: 252 RMREASEFFDAMPVKPVVAC-----NEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMI 306
            + + S+       K  + C     N +I  +G  G+   A+ +F+     D  +W+A+I
Sbjct: 230 DL-DISKQLHCSATKKGLDCEISVVNSLISAYGKCGNTHMAERMFQDAGSWDIVSWNAII 288

Query: 307 KVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFD 366
               +    L+AL LF  M   G + N                   GRQ+H  L+++  +
Sbjct: 289 CATAKSENPLKALKLFVSMPEHGFSPNQGTYVSVLGVSSLVQLLSCGRQIHGMLIKNGCE 348

Query: 367 QDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDM 426
             + + +ALI  Y KCG+L  ++  F+    K++V WN++++GY+    G   L++F  M
Sbjct: 349 TGIVLGNALIDFYAKCGNLEDSRLCFDYIRDKNIVCWNALLSGYANKD-GPICLSLFLQM 407

Query: 427 CLSGVPPDDISFIGVLSACS-------YSGKVKEGRE----IFESMKCKYQVEPGIEHYA 475
              G  P + +F   L +C        +S  V+ G E    +  S+   Y     +    
Sbjct: 408 LQMGFRPTEYTFSTALKSCCVTELQQLHSVIVRMGYEDNDYVLSSLMRSYAKNQLMNDAL 467

Query: 476 CMVD----------------LLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKL 519
            ++D                +  R GQ +++V+++  +  +PD + W   + AC    + 
Sbjct: 468 LLLDWASGPTSVVPLNIVAGIYSRRGQYHESVKLISTLE-QPDTVSWNIAIAACS---RS 523

Query: 520 DLAEVAVEKLAQLEPKNAGP 539
           D  E  +E    +   N  P
Sbjct: 524 DYHEEVIELFKHMLQSNIRP 543



 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 112/252 (44%), Gaps = 11/252 (4%)

Query: 265 VKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFAR 324
           ++PV  CN +I  +   G+V  A  VF++M ER+  +++ +IK Y + G   +A G+F+ 
Sbjct: 46  LQPVYVCNNIISLYEKLGEVSLAGKVFDQMPERNKVSFNTIIKGYSKYGDVDKAWGVFSE 105

Query: 325 MQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHA-RLVRSEFDQDLYVASALITMYVKCG 383
           M+  G   N                   G Q+H   L    F  D +V + L+ +Y +  
Sbjct: 106 MRYFGYLPN--QSTVSGLLSCASLDVRAGTQLHGLSLKYGLFMADAFVGTCLLCLYGRLD 163

Query: 384 DLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLS 443
            L  A+ +F   P K +  WN M++     G  +E +  FR++   G    + SF+GVL 
Sbjct: 164 LLEMAEQVFEDMPFKSLETWNHMMSLLGHRGFLKECMFFFRELVRMGASLTESSFLGVLK 223

Query: 444 ACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEP-- 501
             S    +   +++  S   K  ++  I     ++   G+ G  + A    E+M  +   
Sbjct: 224 GVSCVKDLDISKQLHCSAT-KKGLDCEISVVNSLISAYGKCGNTHMA----ERMFQDAGS 278

Query: 502 -DAIVWGSLLGA 512
            D + W +++ A
Sbjct: 279 WDIVSWNAIICA 290


>AT4G18520.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:10215250-10217103 REVERSE
           LENGTH=617
          Length = 617

 Score =  173 bits (439), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 118/457 (25%), Positives = 225/457 (49%), Gaps = 26/457 (5%)

Query: 86  NGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPE---- 141
           N ++S  V+ G +  AR+VFD+MP +N V+WT+M+ GY++ G  +EA  LF    +    
Sbjct: 121 NNLISSCVRLGDLVYARKVFDSMPEKNTVTWTAMIDGYLKYGLEDEAFALFEDYVKHGIR 180

Query: 142 -KNVVSWTVMLGGLLKDSRVEDARKLFDMM---PVKDVVAVTNMIGGYCEEGRLEEARAL 197
             N   +  +L    + +  E  R++   M    V +++  ++++  Y + G L  A   
Sbjct: 181 FTNERMFVCLLNLCSRRAEFELGRQVHGNMVKVGVGNLIVESSLVYFYAQCGELTSALRA 240

Query: 198 FDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRM 253
           FD M +++V++WT ++S  +R      A  +F  M       NE +  ++L   +    +
Sbjct: 241 FDMMEEKDVISWTAVISACSRKGHGIKAIGMFIGMLNHWFLPNEFTVCSILKACSEEKAL 300

Query: 254 REASEFFDAMPVKPVVACNEMIMGFGFD-----GDVDRAKAVFEKMRERDDGTWSAMIKV 308
           R   +   ++ VK ++  +  +     D     G++   + VF+ M  R+  TW+++I  
Sbjct: 301 RFGRQV-HSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNTVTWTSIIAA 359

Query: 309 YERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQD 368
           + R+GF  EA+ LF  M+R     N                   G+++HA+++++  +++
Sbjct: 360 HAREGFGEEAISLFRIMKRRHLIANNLTVVSILRACGSVGALLLGKELHAQIIKNSIEKN 419

Query: 369 LYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCL 428
           +Y+ S L+ +Y KCG+   A  +  + P +DVV W +MI+G S  G   EAL+  ++M  
Sbjct: 420 VYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSSLGHESEALDFLKEMIQ 479

Query: 429 SGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVN 488
            GV P+  ++   L AC+ S  +  GR I  S+  K      +   + ++ +  + G V+
Sbjct: 480 EGVEPNPFTYSSALKACANSESLLIGRSI-HSIAKKNHALSNVFVGSALIHMYAKCGFVS 538

Query: 489 DAVEIVEKMPMEPDAIVWGSLL------GACRTHMKL 519
           +A  + + MP E + + W +++      G CR  +KL
Sbjct: 539 EAFRVFDSMP-EKNLVSWKAMIMGYARNGFCREALKL 574



 Score =  157 bits (396), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 125/479 (26%), Positives = 209/479 (43%), Gaps = 63/479 (13%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFET-------- 76
           IS   R+G +  ARKVFD  P   + T +W AM+  Y +     +A  LFE         
Sbjct: 124 ISSCVRLGDLVYARKVFDSMPE--KNTVTWTAMIDGYLKYGLEDEAFALFEDYVKHGIRF 181

Query: 77  TPEK-------------------------------NIVSWNGMVSGFVKNGMVAEARRVF 105
           T E+                               N++  + +V  + + G +  A R F
Sbjct: 182 TNERMFVCLLNLCSRRAEFELGRQVHGNMVKVGVGNLIVESSLVYFYAQCGELTSALRAF 241

Query: 106 DAMPVRNVVSWTSMVRGYVQEGNVEEAERLF------WRMPEKNVVSWTVMLGGLLKDSR 159
           D M  ++V+SWT+++    ++G+  +A  +F      W +P +  V    +L    ++  
Sbjct: 242 DMMEEKDVISWTAVISACSRKGHGIKAIGMFIGMLNHWFLPNEFTV--CSILKACSEEKA 299

Query: 160 VEDARKLFDM----MPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSG 215
           +   R++  +    M   DV   T+++  Y + G + + R +FD M  RN VTWT++++ 
Sbjct: 300 LRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNTVTWTSIIAA 359

Query: 216 YARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVAC 271
           +AR    + A  LF +M  R    N ++  ++L      G +    E   A  +K  +  
Sbjct: 360 HAREGFGEEAISLFRIMKRRHLIANNLTVVSILRACGSVGALLLGKEL-HAQIIKNSIEK 418

Query: 272 N-----EMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQ 326
           N      ++  +   G+   A  V +++  RD  +W+AMI      G E EAL     M 
Sbjct: 419 NVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSSLGHESEALDFLKEMI 478

Query: 327 REGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLV 386
           +EG   N                   GR +H+   ++    +++V SALI MY KCG + 
Sbjct: 479 QEGVEPNPFTYSSALKACANSESLLIGRSIHSIAKKNHALSNVFVGSALIHMYAKCGFVS 538

Query: 387 RAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSAC 445
            A  +F+  P K++V W +MI GY+++G   EAL +   M   G   DD  F  +LS C
Sbjct: 539 EAFRVFDSMPEKNLVSWKAMIMGYARNGFCREALKLMYRMEAEGFEVDDYIFATILSTC 597



 Score = 84.3 bits (207), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 109/254 (42%), Gaps = 49/254 (19%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLF------- 74
           T  +  YA+ G+I + RKVFD     +R T +W +++AA+ +     +A++LF       
Sbjct: 323 TSLMDMYAKCGEISDCRKVFDGMS--NRNTVTWTSIIAAHAREGFGEEAISLFRIMKRRH 380

Query: 75  --------------------------------ETTPEKNIVSWNGMVSGFVKNGMVAEAR 102
                                           + + EKN+   + +V  + K G   +A 
Sbjct: 381 LIANNLTVVSILRACGSVGALLLGKELHAQIIKNSIEKNVYIGSTLVWLYCKCGESRDAF 440

Query: 103 RVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM----PEKNVVSWTVMLGGLLKDS 158
            V   +P R+VVSWT+M+ G    G+  EA      M     E N  +++  L       
Sbjct: 441 NVLQQLPSRDVVSWTAMISGCSSLGHESEALDFLKEMIQEGVEPNPFTYSSALKACANSE 500

Query: 159 RVEDARKLFDMM----PVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVS 214
            +   R +  +      + +V   + +I  Y + G + EA  +FD MP++N+V+W  M+ 
Sbjct: 501 SLLIGRSIHSIAKKNHALSNVFVGSALIHMYAKCGFVSEAFRVFDSMPEKNLVSWKAMIM 560

Query: 215 GYARNRRVDVARKL 228
           GYARN     A KL
Sbjct: 561 GYARNGFCREALKL 574



 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 90/164 (54%), Gaps = 10/164 (6%)

Query: 354 RQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQH 413
           +++HA  ++   DQ +Y  + LI+  V+ GDLV A+ +F+  P K+ V W +MI GY ++
Sbjct: 102 KRIHAMALKCFDDQVIYFGNNLISSCVRLGDLVYARKVFDSMPEKNTVTWTAMIDGYLKY 161

Query: 414 GLGEEALNVFRDMCLSGVP-PDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIE 472
           GL +EA  +F D    G+   ++  F+ +L+ CS   + + GR++  +M     V+ G+ 
Sbjct: 162 GLEDEAFALFEDYVKHGIRFTNERMFVCLLNLCSRRAEFELGRQVHGNM-----VKVGVG 216

Query: 473 HY---ACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGAC 513
           +    + +V    + G++  A+   + M  E D I W +++ AC
Sbjct: 217 NLIVESSLVYFYAQCGELTSALRAFDMME-EKDVISWTAVISAC 259


>AT1G29710.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:10387673-10389100 FORWARD
           LENGTH=475
          Length = 475

 Score =  169 bits (427), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 110/396 (27%), Positives = 189/396 (47%), Gaps = 27/396 (6%)

Query: 317 EALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALI 376
           EA+ +   ++ +G A++                 +  R VH  ++      D+   +A+I
Sbjct: 102 EAVEVLDYLENKGYAMDLIRLLGLAKLCGKPEALEAARVVHECIIALVSPCDVGARNAII 161

Query: 377 TMYVKCGDLVRAKWIFNRYPLKDVVMWNS-----MITGYSQHGLGEEALNVFRDMCLSGV 431
            MY  C  +  A  +F   P      WNS     M+  +  +G GEEA+++F      G 
Sbjct: 162 EMYSGCCSVDDALKVFEEMP-----EWNSGTLCVMMRCFVNNGYGEEAIDLFTRFKEEGN 216

Query: 432 PPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAV 491
            P+   F  V S C+ +G VKEG   F++M  +Y + P +EHY  +  +L  +G +++A+
Sbjct: 217 KPNGEIFNQVFSTCTLTGDVKEGSLQFQAMYREYGIVPSMEHYHSVTKMLATSGHLDEAL 276

Query: 492 EIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKG 551
             VE+MPMEP   VW +L+   R H  ++L +   E + +L+       V  + + A+K 
Sbjct: 277 NFVERMPMEPSVDVWETLMNLSRVHGDVELGDRCAELVEKLDATRLDK-VSSAGLVATKA 335

Query: 552 RWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLL 611
                + V+++  TRS            E   +      ++ HP+  II + L  L   L
Sbjct: 336 S----DFVKKEPSTRS------------EPYFYSTFRPVDSSHPQMNIIYETLMSLRSQL 379

Query: 612 RDAGYSPDHSFVLHDVEEEEKTHSLGYHSEKLAIAYGLLKVPEGMPIRVMKNLRVCGDCH 671
           ++ GY PD  +    +   E    +  + E++A+   LLK      I ++ N+R+ GDCH
Sbjct: 380 KEMGYVPDTRYYRSLIMAMENKEQIFGYREEIAVVESLLKSKPRSAITLLTNIRIVGDCH 439

Query: 672 SAIKLIAKVTGREIIVRDANRFHHFKDGYCSCKDYW 707
             +KL++ +TGR++I RDA  +H FK+G C C + W
Sbjct: 440 DMMKLMSVITGRDMIKRDAKIYHLFKNGVCRCNNLW 475


>AT3G26630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:9791572-9792939 REVERSE
           LENGTH=455
          Length = 455

 Score =  166 bits (420), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 120/399 (30%), Positives = 183/399 (45%), Gaps = 31/399 (7%)

Query: 106 DAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARK 165
           D + VR ++S +S        G  + A  +F ++   +  +W +M+  L  + +  +A  
Sbjct: 51  DQLLVRQLISVSSSF------GETQYASLVFNQLQSPSTFTWNLMIRSLSVNHKPREALL 104

Query: 166 LFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVA 225
           LF +M +            +  +  L  +            +   T V G A      + 
Sbjct: 105 LFILMMISHQSQFDKFTFPFVIKACLASSS-----------IRLGTQVHGLA------IK 147

Query: 226 RKLFEVMPERNEVSWTAMLMG-YTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDV 284
              F      N+V +   LM  Y   G+     + FD MP + +V+   M+ G   +  +
Sbjct: 148 AGFF------NDVFFQNTLMDLYFKCGKPDSGRKVFDKMPGRSIVSWTTMLYGLVSNSQL 201

Query: 285 DRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXX 344
           D A+ VF +M  R+  +W+AMI  Y +     EA  LF RMQ +    N           
Sbjct: 202 DSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAFQLFRRMQVDDVKPNEFTIVNLLQAS 261

Query: 345 XXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWN 404
                   GR VH    ++ F  D ++ +ALI MY KCG L  A+ +F+    K +  WN
Sbjct: 262 TQLGSLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKCGSLQDARKVFDVMQGKSLATWN 321

Query: 405 SMITGYSQHGLGEEALNVFRDMCL-SGVPPDDISFIGVLSACSYSGKVKEGREIFESMKC 463
           SMIT    HG GEEAL++F +M   + V PD I+F+GVLSAC+ +G VK+G   F  M  
Sbjct: 322 SMITSLGVHGCGEEALSLFEEMEEEASVEPDAITFVGVLSACANTGNVKDGLRYFTRMIQ 381

Query: 464 KYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPD 502
            Y + P  EH ACM+ LL +A +V  A  +VE M  +PD
Sbjct: 382 VYGISPIREHNACMIQLLEQALEVEKASNLVESMDSDPD 420



 Score =  103 bits (257), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 128/284 (45%), Gaps = 50/284 (17%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLF-------ETT 77
           IS  +  G+ + A  VF++      +T +WN M+ +    H+P +A+ LF       ++ 
Sbjct: 59  ISVSSSFGETQYASLVFNQLQS--PSTFTWNLMIRSLSVNHKPREALLLFILMMISHQSQ 116

Query: 78  PEK---------------------------------NIVSWNGMVSGFVKNGMVAEARRV 104
            +K                                 ++   N ++  + K G     R+V
Sbjct: 117 FDKFTFPFVIKACLASSSIRLGTQVHGLAIKAGFFNDVFFQNTLMDLYFKCGKPDSGRKV 176

Query: 105 FDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDAR 164
           FD MP R++VSWT+M+ G V    ++ AE +F +MP +NVVSWT M+   +K+ R ++A 
Sbjct: 177 FDKMPGRSIVSWTTMLYGLVSNSQLDSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAF 236

Query: 165 KLFDMMPVKDV----VAVTNMIGGYCEEGRLEEARALFDEMPKRNVV----TWTTMVSGY 216
           +LF  M V DV      + N++    + G L   R + D   K   V      T ++  Y
Sbjct: 237 QLFRRMQVDDVKPNEFTIVNLLQASTQLGSLSMGRWVHDYAHKNGFVLDCFLGTALIDMY 296

Query: 217 ARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFF 260
           ++   +  ARK+F+VM  ++  +W +M+      G   EA   F
Sbjct: 297 SKCGSLQDARKVFDVMQGKSLATWNSMITSLGVHGCGEEALSLF 340



 Score =  103 bits (256), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 128/267 (47%), Gaps = 26/267 (9%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVV 114
           N ++  YF+  +P     +F+  P ++IVSW  M+ G V N  +  A  VF+ MP+RNVV
Sbjct: 158 NTLMDLYFKCGKPDSGRKVFDKMPGRSIVSWTTMLYGLVSNSQLDSAEIVFNQMPMRNVV 217

Query: 115 SWTSMVRGYVQEGNVEEAERLFWRM------PEK----NVVSWTVMLGGLLKDSRVEDAR 164
           SWT+M+  YV+    +EA +LF RM      P +    N++  +  LG L     V D  
Sbjct: 218 SWTAMITAYVKNRRPDEAFQLFRRMQVDDVKPNEFTIVNLLQASTQLGSLSMGRWVHDYA 277

Query: 165 KLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDV 224
                  V D    T +I  Y + G L++AR +FD M  +++ TW +M++    +   + 
Sbjct: 278 HKNGF--VLDCFLGTALIDMYSKCGSLQDARKVFDVMQGKSLATWNSMITSLGVHGCGEE 335

Query: 225 ARKLFEVMP-----ERNEVSWTAMLMGYTHSGRMREASEFFDAM-------PVKPVVACN 272
           A  LFE M      E + +++  +L    ++G +++   +F  M       P++   AC 
Sbjct: 336 ALSLFEEMEEEASVEPDAITFVGVLSACANTGNVKDGLRYFTRMIQVYGISPIREHNAC- 394

Query: 273 EMIMGFGFDGDVDRAKAVFEKMRERDD 299
            MI       +V++A  + E M    D
Sbjct: 395 -MIQLLEQALEVEKASNLVESMDSDPD 420



 Score = 89.0 bits (219), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 132/329 (40%), Gaps = 59/329 (17%)

Query: 43  ETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEAR 102
           E  +  RT S+++       Q  Q H  +     T ++ +V    ++S     G    A 
Sbjct: 22  EASYFLRTCSNFS-------QLKQIHTKIIKHNLTNDQLLV--RQLISVSSSFGETQYAS 72

Query: 103 RVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRM-----PEKNVVSWTVMLGGLLKD 157
            VF+ +   +  +W  M+R         EA  LF  M      + +  ++  ++   L  
Sbjct: 73  LVFNQLQSPSTFTWNLMIRSLSVNHKPREALLLFILMMISHQSQFDKFTFPFVIKACLAS 132

Query: 158 SRVEDARKLFDMMP----VKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMV 213
           S +    ++  +        DV     ++  Y + G+ +  R +FD+MP R++V+WTTM+
Sbjct: 133 SSIRLGTQVHGLAIKAGFFNDVFFQNTLMDLYFKCGKPDSGRKVFDKMPGRSIVSWTTML 192

Query: 214 SGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNE 273
            G   N ++D A  +F  MP RN VSWTAM+  Y  + R  EA + F  M V  V   NE
Sbjct: 193 YGLVSNSQLDSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAFQLFRRMQVDDVKP-NE 251

Query: 274 MIM--------------------------GFGFD--------------GDVDRAKAVFEK 293
             +                          GF  D              G +  A+ VF+ 
Sbjct: 252 FTIVNLLQASTQLGSLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKCGSLQDARKVFDV 311

Query: 294 MRERDDGTWSAMIKVYERKGFELEALGLF 322
           M+ +   TW++MI      G   EAL LF
Sbjct: 312 MQGKSLATWNSMITSLGVHGCGEEALSLF 340



 Score = 60.1 bits (144), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 80/177 (45%), Gaps = 3/177 (1%)

Query: 354 RQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQH 413
           +Q+H ++++     D  +   LI++    G+   A  +FN+        WN MI   S +
Sbjct: 37  KQIHTKIIKHNLTNDQLLVRQLISVSSSFGETQYASLVFNQLQSPSTFTWNLMIRSLSVN 96

Query: 414 GLGEEALNVFRDMCLSGVPP-DDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIE 472
               EAL +F  M +S     D  +F  V+ AC  S  ++ G ++   +  K      + 
Sbjct: 97  HKPREALLLFILMMISHQSQFDKFTFPFVIKACLASSSIRLGTQV-HGLAIKAGFFNDVF 155

Query: 473 HYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKL 529
               ++DL  + G+ +   ++ +KMP     + W ++L    ++ +LD AE+   ++
Sbjct: 156 FQNTLMDLYFKCGKPDSGRKVFDKMPGR-SIVSWTTMLYGLVSNSQLDSAEIVFNQM 211


>AT1G71460.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:26928247-26930316 REVERSE
           LENGTH=689
          Length = 689

 Score =  162 bits (409), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 133/534 (24%), Positives = 234/534 (43%), Gaps = 73/534 (13%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMV-AAYFQAHQPHQAVT-----LFE 75
           T  +  Y   G +++A+KVFDE+        SWNA++        + +Q V      + E
Sbjct: 150 TKLVHMYTACGSVKDAQKVFDES--TSSNVYSWNALLRGTVISGKKRYQDVLSTFTEMRE 207

Query: 76  TTPEKNIVSWNGMVSGF-----VKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVE 130
              + N+ S + +   F     ++ G+   A  + + +   +V   TS+V  Y + G V 
Sbjct: 208 LGVDLNVYSLSNVFKSFAGASALRQGLKTHALAIKNGL-FNSVFLKTSLVDMYFKCGKVG 266

Query: 131 EAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMM-----------------PV- 172
            A R+F  + E+++V W  M+ GL  + R  +A  LF  M                 PV 
Sbjct: 267 LARRVFDEIVERDIVVWGAMIAGLAHNKRQWEALGLFRTMISEEKIYPNSVILTTILPVL 326

Query: 173 KDVVAV-----------------------TNMIGGYCEEGRLEEARALFDEMPKRNVVTW 209
            DV A+                       + +I  YC+ G +   R +F    +RN ++W
Sbjct: 327 GDVKALKLGKEVHAHVLKSKNYVEQPFVHSGLIDLYCKCGDMASGRRVFYGSKQRNAISW 386

Query: 210 TTMVSGYARNRRVDVARKLFEVMPE---RNEVSWTAMLMGYTHSGRMREASEFFDAMPVK 266
           T ++SGYA N R D A +    M +   R +V   A ++      R  +  +      +K
Sbjct: 387 TALMSGYAANGRFDQALRSIVWMQQEGFRPDVVTIATVLPVCAELRAIKQGKEIHCYALK 446

Query: 267 PVVACN-----EMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYE-----RKGFEL 316
            +   N      +++ +   G  +    +F+++ +R+   W+AMI  Y      R G E+
Sbjct: 447 NLFLPNVSLVTSLMVMYSKCGVPEYPIRLFDRLEQRNVKAWTAMIDCYVENCDLRAGIEV 506

Query: 317 EALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALI 376
             L L ++ + +   +                    G+++H  +++ EF+   +V++ +I
Sbjct: 507 FRLMLLSKHRPDSVTMG-----RVLTVCSDLKALKLGKELHGHILKKEFESIPFVSARII 561

Query: 377 TMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDI 436
            MY KCGDL  A + F+   +K  + W ++I  Y  + L  +A+N F  M   G  P+  
Sbjct: 562 KMYGKCGDLRSANFSFDAVAVKGSLTWTAIIEAYGCNELFRDAINCFEQMVSRGFTPNTF 621

Query: 437 SFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDA 490
           +F  VLS CS +G V E    F  M   Y ++P  EHY+ +++LL R G+V +A
Sbjct: 622 TFTAVLSICSQAGFVDEAYRFFNLMLRMYNLQPSEEHYSLVIELLNRCGRVEEA 675



 Score = 80.1 bits (196), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 72/329 (21%), Positives = 139/329 (42%), Gaps = 34/329 (10%)

Query: 216 YARNRRVDVARKLFEVMPER----NEVSWTAML------MGYTHSGRMR--------EAS 257
           +AR   ++VA  + + + +R    N  +++A+L          H  ++         E++
Sbjct: 86  FARQNNLEVALTILDYLEQRGIPVNATTFSALLEACVRRKSLLHGKQVHVHIRINGLESN 145

Query: 258 EFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIK--VYERKGFE 315
           EF     V    AC          G V  A+ VF++    +  +W+A+++  V   K   
Sbjct: 146 EFLRTKLVHMYTAC----------GSVKDAQKVFDESTSSNVYSWNALLRGTVISGKKRY 195

Query: 316 LEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASAL 375
            + L  F  M+  G  LN                   G + HA  +++     +++ ++L
Sbjct: 196 QDVLSTFTEMRELGVDLNVYSLSNVFKSFAGASALRQGLKTHALAIKNGLFNSVFLKTSL 255

Query: 376 ITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCL-SGVPPD 434
           + MY KCG +  A+ +F+    +D+V+W +MI G + +    EAL +FR M     + P+
Sbjct: 256 VDMYFKCGKVGLARRVFDEIVERDIVVWGAMIAGLAHNKRQWEALGLFRTMISEEKIYPN 315

Query: 435 DISFIGVLSACSYSGKVKEGREIFES-MKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEI 493
            +    +L        +K G+E+    +K K  VE    H + ++DL  + G +     +
Sbjct: 316 SVILTTILPVLGDVKALKLGKEVHAHVLKSKNYVEQPFVH-SGLIDLYCKCGDMASGRRV 374

Query: 494 VEKMPMEPDAIVWGSLLGACRTHMKLDLA 522
                 + +AI W +L+     + + D A
Sbjct: 375 FYG-SKQRNAISWTALMSGYAANGRFDQA 402


>AT2G34370.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:14510482-14511891 FORWARD
           LENGTH=469
          Length = 469

 Score =  159 bits (401), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 113/397 (28%), Positives = 185/397 (46%), Gaps = 28/397 (7%)

Query: 317 EALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALI 376
           EAL +   ++ +G  ++FP               +  R VH  +  +  D   Y    +I
Sbjct: 95  EALEVIDILEDKGYIVDFPRLLGLAKLCGEVEALEEARVVHDCI--TPLDARSY--HTVI 150

Query: 377 TMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDI 436
            MY  C     A  +FN  P ++   W +MI   +++G GE A+++F      G  PD  
Sbjct: 151 EMYSGCRSTDDALNVFNEMPKRNSETWGTMIRCLAKNGEGERAIDMFTRFIEEGNKPDKE 210

Query: 437 SFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEK 496
            F  V  AC   G + EG   FESM   Y +   +E Y  ++++L   G +++A++ VE+
Sbjct: 211 IFKAVFFACVSIGDINEGLLHFESMYRDYGMVLSMEDYVNVIEMLAACGHLDEALDFVER 270

Query: 497 MPMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPK------NAGPYVLLSHMYASK 550
           M +EP   +W +L+  C     L+L +   E + +L+        NAG       + A+K
Sbjct: 271 MTVEPSVEMWETLMNLCWVQGYLELGDRFAELIKKLDASRMSKESNAG-------LVAAK 323

Query: 551 GRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGL 610
                +E ++E    + +   P       +K+ H F  GD +        +     L   
Sbjct: 324 ASDSAMEKLKELRYCQMIRDDP-------KKRMHEFRAGDTS----HLGTVSAFRSLKVQ 372

Query: 611 LRDAGYSPDHSFVLHDVEEEEKTHSLGYHSEKLAIAYGLLKVPEGMPIRVMKNLRVCGDC 670
           + D G+ P        VEEEEK   L + S KLA A+ ++      P+ V++N+R C D 
Sbjct: 373 MLDIGFVPATRVCFVTVEEEEKEEQLLFRSNKLAFAHAIINSEARRPLTVLQNMRTCIDG 432

Query: 671 HSAIKLIAKVTGREIIVRDANRFHHFKDGYCSCKDYW 707
           H+  K+I+ +TGR +I RD  ++H +K+G CSCKDYW
Sbjct: 433 HNTFKMISLITGRALIQRDKKKYHFYKNGVCSCKDYW 469


>AT1G47580.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:17485668-17486387 FORWARD
           LENGTH=239
          Length = 239

 Score =  145 bits (367), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 68/152 (44%), Positives = 96/152 (63%), Gaps = 2/152 (1%)

Query: 558 VVREKIKTRSVIK--LPGYSWIEVEKKAHMFVGGDNNCHPEQPIIMKMLERLDGLLRDAG 615
           VVR  ++  + ++   P     +V        GG+     ++      L+ L   +RDAG
Sbjct: 88  VVRNTVRKDTTLRHISPSSHSTKVRGDKPEISGGEKKAIVDRSKAYVKLKSLGKEVRDAG 147

Query: 616 YSPDHSFVLHDVEEEEKTHSLGYHSEKLAIAYGLLKVPEGMPIRVMKNLRVCGDCHSAIK 675
           Y P+  +VLHD++EE K  +L +HSE+LAIA+G++  P G  IRVMKNLR+CGDCH+ IK
Sbjct: 148 YVPETKYVLHDIDEEAKEKALMHHSERLAIAFGIINTPPGTTIRVMKNLRICGDCHNFIK 207

Query: 676 LIAKVTGREIIVRDANRFHHFKDGYCSCKDYW 707
           +++ +  REIIVRD  RFHHF+DG CSC DYW
Sbjct: 208 ILSSIEDREIIVRDNKRFHHFRDGNCSCGDYW 239


>AT1G62930.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:23306534-23308423 FORWARD
           LENGTH=629
          Length = 629

 Score =  129 bits (324), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 108/445 (24%), Positives = 204/445 (45%), Gaps = 63/445 (14%)

Query: 50  TTSSWNAMVAAYFQAHQPHQAVTLFETTPEK----NIVSWNGMVSGFVKNGMVAEARRVF 105
            T ++N ++   F  ++  +AV L +    +    ++ ++  +V+G  K G +  A  + 
Sbjct: 184 NTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLL 243

Query: 106 DAMPV----RNVVSWTSMVRGYVQEGNVEEAERLFWRMPEK----NVVSWTVMLGGLLKD 157
             M       +VV +T+++       NV +A  LF  M  K    NVV++  ++  L   
Sbjct: 244 KKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNY 303

Query: 158 SRVEDARKLF-DMMPVK---DVVAVTNMIGGYCEEGRLEEARALFDEMPKR----NVVTW 209
            R  DA +L  DM+  K   +VV  + +I  + +EG+L EA  L+DEM KR    ++ T+
Sbjct: 304 GRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 363

Query: 210 TTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAMP- 264
           +++++G+  + R+D A+ +FE+M  +    N V++  ++ G+  + R+ E  E F  M  
Sbjct: 364 SSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQ 423

Query: 265 ---VKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGL 321
              V   V  N +I G    GD D A+ +F+KM    DG    +I         L+ L  
Sbjct: 424 RGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVS--DGVPPDIITY----SILLDGLCK 477

Query: 322 FARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVK 381
           + ++++      +                         L +S+ + D+Y  + +I    K
Sbjct: 478 YGKLEKALVVFEY-------------------------LQKSKMEPDIYTYNIMIEGMCK 512

Query: 382 CGDLVRAKWIFNRYPLK----DVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDIS 437
            G +     +F    LK    +V+++ +MI+G+ + GL EEA  +FR+M   G  P+  +
Sbjct: 513 AGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGT 572

Query: 438 FIGVLSACSYSGKVKEGREIFESMK 462
           +  ++ A    G      E+ + M+
Sbjct: 573 YNTLIRARLRDGDKAASAELIKEMR 597



 Score =  110 bits (276), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 112/530 (21%), Positives = 235/530 (44%), Gaps = 82/530 (15%)

Query: 33  QIENARKVFDETPHIHRTTS--SWNAMVAAYFQAHQPHQAVTLFETTPEKNI----VSWN 86
           ++++A  +F E        S   +N +++A  + ++    ++L E      I     S+N
Sbjct: 60  KLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYN 119

Query: 87  GMVSGFVKNGMVAEARRVFDAM------PVRNVVSWTSMVRGYVQEGNVEEA----ERLF 136
            +++ F +   +  A  V   M      P  ++V+ +S++ GY     + EA    +++F
Sbjct: 120 ILINCFCRRSQLPLALAVLGKMMKLGYEP--DIVTLSSLLNGYCHGKRISEAVALVDQMF 177

Query: 137 WRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVK----DVVAVTNMIGGYCEEGRLE 192
               + N V++  ++ GL   ++  +A  L D M  +    D+     ++ G C+ G ++
Sbjct: 178 VMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDID 237

Query: 193 EARALFDEMPK----RNVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAML 244
            A +L  +M K     +VV +TT++      + V+ A  LF  M  +    N V++ +++
Sbjct: 238 LALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLI 297

Query: 245 MGYTHSGRMREASEFFDAM---PVKP-VVACNEMIMGFGFDGDVDRAKAVFEKMRER--- 297
               + GR  +AS     M    + P VV  + +I  F  +G +  A+ ++++M +R   
Sbjct: 298 RCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID 357

Query: 298 -DDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQV 356
            D  T+S++I      GF +                                  D  + +
Sbjct: 358 PDIFTYSSLIN-----GFCMH------------------------------DRLDEAKHM 382

Query: 357 HARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIF----NRYPLKDVVMWNSMITGYSQ 412
              ++  +   ++   + LI  + K   +     +F     R  + + V +N++I G  Q
Sbjct: 383 FELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQ 442

Query: 413 HGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIE 472
            G  + A  +F+ M   GVPPD I++  +L      GK+++   +FE ++ K ++EP I 
Sbjct: 443 AGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQ-KSKMEPDIY 501

Query: 473 HYACMVDLLGRAGQVNDAVEIVEKMPM---EPDAIVWGSLL-GACRTHMK 518
            Y  M++ + +AG+V D  ++   + +   +P+ I++ +++ G CR  +K
Sbjct: 502 TYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLK 551


>AT5G39710.1 | Symbols: EMB2745 | Tetratricopeptide repeat
           (TPR)-like superfamily protein | chr5:15895729-15897972
           FORWARD LENGTH=747
          Length = 747

 Score =  125 bits (315), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 121/538 (22%), Positives = 231/538 (42%), Gaps = 60/538 (11%)

Query: 19  CTSTGAI-----SRYARIGQIENARKV--FDETPHIHRTTSSWNAMVAAYFQAHQPHQAV 71
           C ST ++       Y+R+  I+ A  +    +         S+NA++ A  ++ +     
Sbjct: 130 CYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFA 189

Query: 72  T-----LFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVR----NVVSWTSMVRG 122
                 + E+    N+ ++N ++ GF   G +  A  +FD M  +    NVV++ +++ G
Sbjct: 190 ENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDG 249

Query: 123 YVQEGNVEEAERLFWRMP----EKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVK----D 174
           Y +   +++  +L   M     E N++S+ V++ GL ++ R+++   +   M  +    D
Sbjct: 250 YCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLD 309

Query: 175 VVAVTNMIGGYCEEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLFE 230
            V    +I GYC+EG   +A  +  EM +     +V+T+T+++    +   ++ A +  +
Sbjct: 310 EVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLD 369

Query: 231 VMPER----NEVSWTAMLMGYTHSGRMREA----SEFFDAMPVKPVVACNEMIMGFGFDG 282
            M  R    NE ++T ++ G++  G M EA     E  D      VV  N +I G    G
Sbjct: 370 QMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTG 429

Query: 283 DVDRAKAVFEKMRER----DDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXX 338
            ++ A AV E M+E+    D  ++S ++  + R     EAL +   M  +G   +     
Sbjct: 430 KMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYS 489

Query: 339 XXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFN----R 394
                            ++  ++R     D +  +ALI  Y   GDL +A  + N    +
Sbjct: 490 SLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEK 549

Query: 395 YPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACS-------- 446
             L DVV ++ +I G ++     EA  +   +      P D+++  ++  CS        
Sbjct: 550 GVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVV 609

Query: 447 -------YSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKM 497
                    G + E  ++FESM  K   +P    Y  M+    RAG +  A  + ++M
Sbjct: 610 SLIKGFCMKGMMTEADQVFESMLGKNH-KPDGTAYNIMIHGHCRAGDIRKAYTLYKEM 666



 Score = 92.8 bits (229), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 89/433 (20%), Positives = 182/433 (42%), Gaps = 70/433 (16%)

Query: 113 VVSWTSMVRGYVQEG-NVEEAERLFWRMPEK----NVVSWTVMLGGLLKDSRVEDARKLF 167
           V+S+ +++   ++   N+  AE +F  M E     NV ++ +++ G      ++ A  LF
Sbjct: 169 VLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLF 228

Query: 168 DMMPVK----DVVAVTNMIGGYCEEGRLEEARALFDEMPKR----NVVTWTTMVSGYARN 219
           D M  K    +VV    +I GYC+  ++++   L   M  +    N++++  +++G  R 
Sbjct: 229 DKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCRE 288

Query: 220 RRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREA----SEFFDAMPVKPVVAC 271
            R+     +   M  R    +EV++  ++ GY   G   +A    +E         V+  
Sbjct: 289 GRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITY 348

Query: 272 NEMIMGFGFDGDVDRAKAVFEKMRER----DDGTWSAMIKVYERKGFELEALGLFARMQR 327
             +I      G+++RA    ++MR R    ++ T++ ++  + +KG+  EA  +   M  
Sbjct: 349 TSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMND 408

Query: 328 EGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVR 387
            G                                   F   +   +ALI  +   G +  
Sbjct: 409 NG-----------------------------------FSPSVVTYNALINGHCVTGKMED 433

Query: 388 AKWIFNRYPLK----DVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLS 443
           A  +      K    DVV ++++++G+ +    +EAL V R+M   G+ PD I++  ++ 
Sbjct: 434 AIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQ 493

Query: 444 ACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAV----EIVEKMPM 499
                 + KE  +++E M  +  + P    Y  +++     G +  A+    E+VEK  +
Sbjct: 494 GFCEQRRTKEACDLYEEM-LRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVL 552

Query: 500 EPDAIVWGSLLGA 512
            PD + +  L+  
Sbjct: 553 -PDVVTYSVLING 564


>AT5G55840.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:22598038-22601688 FORWARD
           LENGTH=1136
          Length = 1136

 Score =  124 bits (312), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 119/566 (21%), Positives = 243/566 (42%), Gaps = 79/566 (13%)

Query: 28  YARIGQIENARKVFD--ETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEK----N 81
           Y + G+ + A ++ D  ++  +     ++N ++    ++++  +   L     ++    N
Sbjct: 278 YCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPN 337

Query: 82  IVSWNGMVSGFVKNGMVAEARRVFDAMPV----RNVVSWTSMVRGYVQEGNVEEAERLFW 137
            V++N +++GF   G V  A ++ + M       N V++ +++ G++ EGN +EA ++F+
Sbjct: 338 EVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFY 397

Query: 138 RMPEKNV----VSWTVMLGGLLKDSRVEDARKLFDMMPVKDV----VAVTNMIGGYCEEG 189
            M  K +    VS+ V+L GL K++  + AR  +  M    V    +  T MI G C+ G
Sbjct: 398 MMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNG 457

Query: 190 RLEEARALFDEMPKR----NVVTWTTMVSGYARNRRVDVAR----KLFEVMPERNEVSWT 241
            L+EA  L +EM K     ++VT++ +++G+ +  R   A+    +++ V    N + ++
Sbjct: 458 FLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYS 517

Query: 242 AMLMGYTHSGRMREASEFFDAMPV----KPVVACNEMIMGFGFDGDVDRAKAVFEKMRER 297
            ++      G ++EA   ++AM +    +     N ++      G V  A+     M   
Sbjct: 518 TLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTS- 576

Query: 298 DDG------TWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXD 351
            DG      ++  +I  Y   G  L+A  +F  M + G   + P                
Sbjct: 577 -DGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVG---HHPTFFTYGSLLKGLCKGG 632

Query: 352 HGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYS 411
           H R+        +F + L+   A +                      D VM+N+++T   
Sbjct: 633 HLREAE------KFLKSLHAVPAAV----------------------DTVMYNTLLTAMC 664

Query: 412 QHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGI 471
           + G   +A+++F +M    + PD  ++  ++S     GK        +  + +  V P  
Sbjct: 665 KSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNK 724

Query: 472 EHYACMVDLLGRAGQVNDAVEIVEKMP---MEPDAIVWGSLLGACRTHMKLDLAEVAVEK 528
             Y C VD + +AGQ    +   E+M      PD +   +++     + ++   E   + 
Sbjct: 725 VMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDG---YSRMGKIEKTNDL 781

Query: 529 LAQLEPKNAGP----YVLLSHMYASK 550
           L ++  +N GP    Y +L H Y+ +
Sbjct: 782 LPEMGNQNGGPNLTTYNILLHGYSKR 807



 Score = 95.5 bits (236), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 104/513 (20%), Positives = 217/513 (42%), Gaps = 45/513 (8%)

Query: 39  KVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIVSWNGMVSGFVKNGMV 98
           +++D   HI +  S  +   +  F A        L  + P      ++ ++  +++ GM+
Sbjct: 126 RMYDPARHILKELSLMSGKSSFVFGALMT--TYRLCNSNPS----VYDILIRVYLREGMI 179

Query: 99  AEARRVFDAMPVR----NVVSWTSMVRGYVQEGNVEEAERLFWRMPEK----NVVSWTVM 150
            ++  +F  M +     +V +  +++   V+ G           M ++    +V ++ ++
Sbjct: 180 QDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNIL 239

Query: 151 LGGLLKDSRVEDARKLFDMMP----VKDVVAVTNMIGGYCEEGRLEEARALFDEMPKR-- 204
           +  L  +   E +  L   M        +V    ++  YC++GR + A  L D M  +  
Sbjct: 240 INVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGV 299

Query: 205 --NVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASE 258
             +V T+  ++    R+ R+     L   M +R    NEV++  ++ G+++ G++  AS+
Sbjct: 300 DADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQ 359

Query: 259 FFDAM---PVKPV-VACNEMIMGFGFDGDVDRAKAVFEKMRER----DDGTWSAMIK-VY 309
             + M    + P  V  N +I G   +G+   A  +F  M  +     + ++  ++  + 
Sbjct: 360 LLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLC 419

Query: 310 ERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDL 369
           +   F+L A G + RM+R G  +                  D    +   + +   D D+
Sbjct: 420 KNAEFDL-ARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDI 478

Query: 370 YVASALITMYVKCGDLVRAKWIFNR-YPL---KDVVMWNSMITGYSQHGLGEEALNVFRD 425
              SALI  + K G    AK I  R Y +    + ++++++I    + G  +EA+ ++  
Sbjct: 479 VTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEA 538

Query: 426 MCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAG 485
           M L G   D  +F  ++++   +GKV E  E    M     + P    + C+++  G +G
Sbjct: 539 MILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSD-GILPNTVSFDCLINGYGNSG 597

Query: 486 QVNDAVEIVEKMPM---EPDAIVWGSLL-GACR 514
           +   A  + ++M      P    +GSLL G C+
Sbjct: 598 EGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCK 630



 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/455 (19%), Positives = 202/455 (44%), Gaps = 48/455 (10%)

Query: 83  VSWNGMVSGFVKNGMVAEARRVFDAMPVR----NVVSWTSMVRGYVQEGNVEEAERLFWR 138
           +++ GM+ G  KNG + EA  + + M       ++V++++++ G+ + G  + A+ +  R
Sbjct: 444 ITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCR 503

Query: 139 M----PEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPV----KDVVAVTNMIGGYCEEGR 190
           +       N + ++ ++    +   +++A ++++ M +    +D      ++   C+ G+
Sbjct: 504 IYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGK 563

Query: 191 LEEA----RALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEV-------S 239
           + EA    R +  +    N V++  +++GY  +       K F V  E  +V       +
Sbjct: 564 VAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGE---GLKAFSVFDEMTKVGHHPTFFT 620

Query: 240 WTAMLMGYTHSGRMREASEFFDAMPVKP----VVACNEMIMGFGFDGDVDRAKAVFEKMR 295
           + ++L G    G +REA +F  ++   P     V  N ++      G++ +A ++F +M 
Sbjct: 621 YGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMV 680

Query: 296 ER----DDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXD 351
           +R    D  T++++I    RKG  + A+ LFA+   E  A                    
Sbjct: 681 QRSILPDSYTYTSLISGLCRKGKTVIAI-LFAK---EAEARGNVLPNKVMYTCFVDGMFK 736

Query: 352 HGRQVHARLVRSEFDQ-----DLYVASALITMYVKCGDLVRAKWIF----NRYPLKDVVM 402
            G+       R + D      D+   +A+I  Y + G + +   +     N+    ++  
Sbjct: 737 AGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTT 796

Query: 403 WNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMK 462
           +N ++ GYS+      +  ++R + L+G+ PD ++   ++     S  ++ G +I ++  
Sbjct: 797 YNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFI 856

Query: 463 CKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKM 497
           C+  VE     +  ++      G++N A ++V+ M
Sbjct: 857 CR-GVEVDRYTFNMLISKCCANGEINWAFDLVKVM 890


>AT1G63400.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23507320-23509053 FORWARD
           LENGTH=577
          Length = 577

 Score =  122 bits (307), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 110/455 (24%), Positives = 209/455 (45%), Gaps = 77/455 (16%)

Query: 20  TSTGAISRYARIGQIENARKVFDETPHI--HRTTSSWNAMVAAYFQAHQPHQAVTLFETT 77
           T +  ++ Y    +I +A  + D+   +     T ++  ++   F  ++  +AV L +  
Sbjct: 157 TLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRM 216

Query: 78  PEK----NIVSWNGMVSGFVKNGMVAEARRVFDAMPVR----NVVSWTSMVRGYVQEGNV 129
            ++    N+V++  +V+G  K G +  A  + + M       NVV +++++    +  + 
Sbjct: 217 VQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHE 276

Query: 130 EEAERLFWRMPEK----NVVSWTVMLGGLLKDSRVEDARKLF-DMMPVK---DVVAVTNM 181
           ++A  LF  M  K    NV++++ ++  L    R  DA +L  DM+  K   +VV    +
Sbjct: 277 DDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNAL 336

Query: 182 IGGYCEEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMPER-- 235
           I  + +EG+L EA  L+DEM KR    ++ T++++++G+  + R+D A+ +FE+M  +  
Sbjct: 337 IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 396

Query: 236 --NEVSWTAMLMGYTHSGRMREASEFFDAMP----VKPVVACNEMIMGFGFDGDVDRAKA 289
             N V++  ++ G+  + R+ E  E F  M     V   V    +I GF    D D A+ 
Sbjct: 397 FPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQM 456

Query: 290 VFEKMRERDDG------TWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXX 343
           VF++M    DG      T++ ++    + G   +A+ +F  +QR                
Sbjct: 457 VFKQMVS--DGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQR---------------- 498

Query: 344 XXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLK----D 399
                              S+ +  +Y  + +I    K G +     +F    LK    D
Sbjct: 499 -------------------SKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPD 539

Query: 400 VVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPD 434
           V+++N+MI+G+ + GL EEA  +FR M   G  PD
Sbjct: 540 VIIYNTMISGFCRKGLKEEADALFRKMREDGPLPD 574



 Score = 99.0 bits (245), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 100/505 (19%), Positives = 226/505 (44%), Gaps = 76/505 (15%)

Query: 54  WNAMVAAYFQAHQPHQAVTLFETTP----EKNIVSWNGMVSGFVKNGMVAEARRVFDAMP 109
           +N +++A  +  +    ++L E         N+ ++N +++ F +   ++ A  +   M 
Sbjct: 88  FNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMM 147

Query: 110 VR----NVVSWTSMVRGYVQEGNVEEAERLFWRMPE----KNVVSWTVMLGGLLKDSRVE 161
                 ++V+ +S++ GY     + +A  L  +M E     + +++T ++ GL   ++  
Sbjct: 148 KLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKAS 207

Query: 162 DARKLFDMMPVK----DVVAVTNMIGGYCEEGRLEEARALFDEMP----KRNVVTWTTMV 213
           +A  L D M  +    ++V    ++ G C+ G ++ A  L ++M     + NVV ++T++
Sbjct: 208 EAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVI 267

Query: 214 SGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAM---PVK 266
               + R  D A  LF  M  +    N +++++++    +  R  +AS     M    + 
Sbjct: 268 DSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKIN 327

Query: 267 P-VVACNEMIMGFGFDGDVDRAKAVFEKMRER----DDGTWSAMIKVYERKGFELEALGL 321
           P VV  N +I  F  +G +  A+ ++++M +R    D  T+S++I      GF +     
Sbjct: 328 PNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN-----GFCMH---- 378

Query: 322 FARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVK 381
                                        D  + +   ++  +   ++   + LI  + K
Sbjct: 379 --------------------------DRLDEAKHMFELMISKDCFPNVVTYNTLINGFCK 412

Query: 382 CGDLVRAKWIF----NRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDIS 437
              +     +F     R  + + V + ++I G+ Q    + A  VF+ M   GV P+ ++
Sbjct: 413 AKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMT 472

Query: 438 FIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKM 497
           +  +L     +GK+++   +FE ++ + ++EP I  Y  M++ + +AG+V D  ++   +
Sbjct: 473 YNTLLDGLCKNGKLEKAMVVFEYLQ-RSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSL 531

Query: 498 PM---EPDAIVWGSLL-GACRTHMK 518
            +   +PD I++ +++ G CR  +K
Sbjct: 532 SLKGVKPDVIIYNTMISGFCRKGLK 556



 Score = 88.2 bits (217), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 97/473 (20%), Positives = 207/473 (43%), Gaps = 35/473 (7%)

Query: 116 WTSMVRGYVQEGNVEEAERLFWRM----PEKNVVSWTVMLGGLLK----DSRVEDARKLF 167
           +  ++R  +    +++A  LF  M    P  ++  +  +L  + K    D  +    K+ 
Sbjct: 53  YREILRNGLHSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQ 112

Query: 168 DMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRRVD 223
            +    ++     +I  +C   ++  A AL  +M K     ++VT +++++GY   +R+ 
Sbjct: 113 RLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRIS 172

Query: 224 VARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAM---PVKP-VVACNEMI 275
            A  L + M E     + +++T ++ G     +  EA    D M     +P +V    ++
Sbjct: 173 DAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVV 232

Query: 276 MGFGFDGDVDRAKAVFEKMR----ERDDGTWSAMIKVYERKGFELEALGLFARMQREGAA 331
            G    GD+D A  +  KM     E +   +S +I    +   E +AL LF  M+ +G  
Sbjct: 233 NGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVR 292

Query: 332 LNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWI 391
            N                     ++ + ++  + + ++   +ALI  +VK G LV A+ +
Sbjct: 293 PNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKL 352

Query: 392 FN----RYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSY 447
           ++    R    D+  ++S+I G+  H   +EA ++F  M      P+ +++  +++    
Sbjct: 353 YDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCK 412

Query: 448 SGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKM---PMEPDAI 504
           + ++ EG E+F  M  +  V   +  Y  ++    +A   ++A  + ++M    + P+ +
Sbjct: 413 AKRIDEGVELFREMSQRGLVGNTVT-YTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIM 471

Query: 505 VWGSLLGACRTHMKLDLAEVAVEKL--AQLEPKNAGPYVLLSHMYASKGRWED 555
            + +LL     + KL+ A V  E L  +++EP      +++  M    G+ ED
Sbjct: 472 TYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGM-CKAGKVED 523


>AT1G09900.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:3218133-3219929 FORWARD
           LENGTH=598
          Length = 598

 Score =  122 bits (306), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 111/537 (20%), Positives = 241/537 (44%), Gaps = 68/537 (12%)

Query: 14  QVRFQCTSTGAISRYARIGQIENARKVFD------ETPHIHRTTSSWNAMVAAYFQAHQP 67
           ++   C ++G+IS    +G  +  R V        E+  ++     +  + + Y  ++  
Sbjct: 29  KLDVSCRTSGSISSKIPLGSRKRNRLVLVSAASKVESSGLNGRAQKFETLSSGYSNSNGN 88

Query: 68  HQAVTLFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAM----PVRNVVSWTSMVRGY 123
               ++  +   +++ S N  +   V+ G + E  +  + M     V +++  T+++RG+
Sbjct: 89  GHYSSVNSSFALEDVES-NNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGF 147

Query: 124 VQEGNVEEAERLFWRMPEK----NVVSWTVMLGGLLKDSRVEDARKLFDMMPVK-DVVAV 178
            + G   +A ++   +       +V+++ VM+ G  K   + +A  + D M V  DVV  
Sbjct: 148 CRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVSPDVVTY 207

Query: 179 TNMIGGYCEEGRLEEARALFDEMPKRN----VVTWTTMVSGYARNRRVDVARKLFEVMPE 234
             ++   C+ G+L++A  + D M +R+    V+T+T ++    R+  V  A KL + M +
Sbjct: 208 NTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRD 267

Query: 235 R----NEVSWTAMLMGYTHSGRMREASEFFDAMP---VKP-VVACNEMIMGFGFDGD-VD 285
           R    + V++  ++ G    GR+ EA +F + MP    +P V+  N ++      G  +D
Sbjct: 268 RGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMD 327

Query: 286 RAKAVFEKMRERDDG---TWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXX 342
             K + + +R+       T++ +I    RKG    A+ +  +M + G   N         
Sbjct: 328 AEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPN--------- 378

Query: 343 XXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVM 402
                    +   +H      + D+ +     +++                 YP  D+V 
Sbjct: 379 ------SLSYNPLLHGFCKEKKMDRAIEYLERMVSRGC--------------YP--DIVT 416

Query: 403 WNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMK 462
           +N+M+T   + G  E+A+ +   +   G  P  I++  V+   + +GK  +  ++ + M+
Sbjct: 417 YNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMR 476

Query: 463 CKYQVEPGIEHYACMVDLLGRAGQVNDAVEI---VEKMPMEPDAIVWGS-LLGACRT 515
            K  ++P    Y+ +V  L R G+V++A++     E+M + P+A+ + S +LG C++
Sbjct: 477 AK-DLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKS 532



 Score =  107 bits (266), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 100/480 (20%), Positives = 205/480 (42%), Gaps = 43/480 (8%)

Query: 21  STGAISRYARIGQIENARKVFDE------TPHIHRTTSSWNAMVAAYFQAHQPHQAVTLF 74
           S   + +  R G++E   K  +        P I   T+    ++  + +  +  +A  + 
Sbjct: 105 SNNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTT----LIRGFCRLGKTRKAAKIL 160

Query: 75  E----TTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVR-NVVSWTSMVRGYVQEGNV 129
           E    +    +++++N M+SG+ K G +  A  V D M V  +VV++ +++R     G +
Sbjct: 161 EILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKL 220

Query: 130 EEAERLFWRMPEKN----VVSWTVMLGGLLKDSRVEDARKLFDMM----PVKDVVAVTNM 181
           ++A  +  RM +++    V+++T+++    +DS V  A KL D M       DVV    +
Sbjct: 221 KQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVL 280

Query: 182 IGGYCEEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMPER-- 235
           + G C+EGRL+EA    ++MP      NV+T   ++       R   A KL   M  +  
Sbjct: 281 VNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGF 340

Query: 236 --NEVSWTAMLMGYTHSGRMREASEFFDAMP---VKP-VVACNEMIMGFGFDGDVDRAKA 289
             + V++  ++      G +  A +  + MP    +P  ++ N ++ GF  +  +DRA  
Sbjct: 341 SPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIE 400

Query: 290 VFEKMRER----DDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXX 345
             E+M  R    D  T++ M+    + G   +A+ +  ++  +G +              
Sbjct: 401 YLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLA 460

Query: 346 XXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYP----LKDVV 401
                    ++   +   +   D    S+L+    + G +  A   F+ +       + V
Sbjct: 461 KAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAV 520

Query: 402 MWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESM 461
            +NS++ G  +    + A++    M   G  P++ S+  ++   +Y G  KE  E+   +
Sbjct: 521 TFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNEL 580



 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/333 (21%), Positives = 141/333 (42%), Gaps = 29/333 (8%)

Query: 250 SGRMREASEFFDAM----PVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRER----DDGT 301
           +G + E  +F + M     V  ++ C  +I GF   G   +A  + E +       D  T
Sbjct: 115 TGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVIT 174

Query: 302 WSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLV 361
           ++ MI  Y + G    AL +  RM      + +                    +V  R++
Sbjct: 175 YNVMISGYCKAGEINNALSVLDRMSVSPDVVTY---NTILRSLCDSGKLKQAMEVLDRML 231

Query: 362 RSEFDQDLYVASALITMYVKCGDLVRAKWIFN----RYPLKDVVMWNSMITGYSQHGLGE 417
           + +   D+   + LI    +   +  A  + +    R    DVV +N ++ G  + G  +
Sbjct: 232 QRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLD 291

Query: 418 EALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACM 477
           EA+    DM  SG  P+ I+   +L +   +G+  +  ++   M  +    P +  +  +
Sbjct: 292 EAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADM-LRKGFSPSVVTFNIL 350

Query: 478 VDLLGRAGQVNDAVEIVEKMPM---EPDAIVWGSLL-GACRTHMKLDLAEVAVEKLAQLE 533
           ++ L R G +  A++I+EKMP    +P+++ +  LL G C+   K+D    A+E L ++ 
Sbjct: 351 INFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCK-EKKMDR---AIEYLERMV 406

Query: 534 PKNAGP----YVLLSHMYASKGRWED-VEVVRE 561
            +   P    Y  +       G+ ED VE++ +
Sbjct: 407 SRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQ 439


>AT1G63080.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23388884-23390728 REVERSE
           LENGTH=614
          Length = 614

 Score =  121 bits (304), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 111/466 (23%), Positives = 209/466 (44%), Gaps = 39/466 (8%)

Query: 53  SWNAMVAAYFQAHQPHQAVTLFETTPE----KNIVSWNGMVSGFVKNGMVAEARRVFDAM 108
           + N+++  +   ++  +AV L +   E     + V++  +V G  ++   +EA  + + M
Sbjct: 137 TLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERM 196

Query: 109 PVR----NVVSWTSMVRGYVQEGNVEEAERLFWRMP----EKNVVSWTVMLGGLLKDSRV 160
            V+    ++V++ +++ G  + G  + A  L  +M     E +VV ++ ++  L K   V
Sbjct: 197 VVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHV 256

Query: 161 EDARKLFDMMPVK----DVVAVTNMIGGYCEEGRLEEARALFDEMPKR----NVVTWTTM 212
           +DA  LF  M  K    DV   +++I   C  GR  +A  L  +M +R    NVVT+ ++
Sbjct: 257 DDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSL 316

Query: 213 VSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAMPVKP- 267
           +  +A+  ++  A KLF+ M +R    N V++ +++ G+    R+ EA + F  M  K  
Sbjct: 317 IDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDC 376

Query: 268 ---VVACNEMIMGFGFDGDVDRAKAVFEKMRER----DDGTWSAMIKVYERKGFELEALG 320
              VV  N +I GF     V     +F  M  R    +  T++ +I  + +      A  
Sbjct: 377 LPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQM 436

Query: 321 LFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYV 380
           +F +M  +G   N                 +    V   L +S+ + D+Y  + +     
Sbjct: 437 VFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMC 496

Query: 381 KCGDLVRAKWIFNRYPLK----DVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDI 436
           K G +     +F    LK    DV+ +N+MI+G+ + GL EEA  +F  M   G  PD  
Sbjct: 497 KAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSG 556

Query: 437 SFIGVLSACSYSGKVKEGREIFESMK-CKYQVEPGIEHYACMVDLL 481
           ++  ++ A    G      E+ + M+ C++  +     Y  + D+L
Sbjct: 557 TYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDAST--YGLVTDML 600



 Score =  110 bits (274), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 105/510 (20%), Positives = 222/510 (43%), Gaps = 57/510 (11%)

Query: 81  NIVSWNGMVSGFVKNGMVAEARRVFDAMPVR----NVVSWTSMVRGYVQEGNVEEAERLF 136
           N+ ++N M++   +   ++ A  +   M       ++V+  S++ G+     + EA  L 
Sbjct: 99  NLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALV 158

Query: 137 WRMPE----KNVVSWTVMLGGLLKDSRVEDARKLFDMMPVK----DVVAVTNMIGGYCEE 188
            +M E     + V++T ++ GL + ++  +A  L + M VK    D+V    +I G C+ 
Sbjct: 159 DQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKR 218

Query: 189 GRLEEARALFDEMPK----RNVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSW 240
           G  + A  L ++M K     +VV ++T++    + R VD A  LF  M  +    +  ++
Sbjct: 219 GEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTY 278

Query: 241 TAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDG 300
           ++++    + GR  +AS     M                            E+    +  
Sbjct: 279 SSLISCLCNYGRWSDASRLLSDM---------------------------LERKINPNVV 311

Query: 301 TWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARL 360
           T++++I  + ++G  +EA  LF  M +     N                 D  +Q+   +
Sbjct: 312 TFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLM 371

Query: 361 VRSEFDQDLYVASALITMYVKCGDLVRAKWIFN----RYPLKDVVMWNSMITGYSQHGLG 416
           V  +   D+   + LI  + K   +V    +F     R  + + V + ++I G+ Q    
Sbjct: 372 VSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDC 431

Query: 417 EEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYAC 476
           + A  VF+ M   GV P+ +++  +L     +GK+++   +FE ++ K ++EP I  Y  
Sbjct: 432 DNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQ-KSKMEPDIYTYNI 490

Query: 477 MVDLLGRAGQVNDAVEIVEKMPM---EPDAIVWGSLL-GACRTHMKLDLAEVAVEKLAQL 532
           M + + +AG+V D  ++   + +   +PD I + +++ G C+  +K +   + ++     
Sbjct: 491 MSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDG 550

Query: 533 EPKNAGPYVLLSHMYASKG-RWEDVEVVRE 561
              ++G Y  L   +   G +    E+++E
Sbjct: 551 PLPDSGTYNTLIRAHLRDGDKAASAELIKE 580



 Score = 88.2 bits (217), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 99/460 (21%), Positives = 198/460 (43%), Gaps = 35/460 (7%)

Query: 129 VEEAERLFWRM----PEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPV----KDVVAVTN 180
           ++EA  LF  M    P  ++V ++ +L  + K  + +      + M +     ++     
Sbjct: 46  LDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNI 105

Query: 181 MIGGYCEEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMPER- 235
           MI   C   +L  A A+  +M K     ++VT  ++++G+    R+  A  L + M E  
Sbjct: 106 MINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 165

Query: 236 ---NEVSWTAMLMGYTHSGRMREASEFFDAMPVK----PVVACNEMIMGFGFDGDVDRAK 288
              + V++T ++ G     +  EA    + M VK     +V    +I G    G+ D A 
Sbjct: 166 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLAL 225

Query: 289 AVFEKMR----ERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXX 344
            +  KM     E D   +S +I    +     +AL LF  M  +G   +           
Sbjct: 226 NLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCL 285

Query: 345 XXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFN----RYPLKDV 400
                     ++ + ++  + + ++   ++LI  + K G L+ A+ +F+    R    ++
Sbjct: 286 CNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNI 345

Query: 401 VMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFES 460
           V +NS+I G+  H   +EA  +F  M      PD +++  +++    + KV +G E+F  
Sbjct: 346 VTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRD 405

Query: 461 MKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKM---PMEPDAIVWGSLLGACRTHM 517
           M  +  V   +  Y  ++    +A   ++A  + ++M    + P+ + + +LL     + 
Sbjct: 406 MSRRGLVGNTVT-YTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNG 464

Query: 518 KLDLAEVAVEKL--AQLEPKNAGPYVLLSHMYASKGRWED 555
           KL+ A V  E L  +++EP +   Y ++S      G+ ED
Sbjct: 465 KLEKAMVVFEYLQKSKMEP-DIYTYNIMSEGMCKAGKVED 503


>AT5G57250.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:23195609-23198524 REVERSE
           LENGTH=971
          Length = 971

 Score =  121 bits (304), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 156/710 (21%), Positives = 291/710 (40%), Gaps = 171/710 (24%)

Query: 17  FQCTSTGAISRYARIGQIENARKVFD---ETPHIHRTTSSWNAMVAAYFQAHQPHQAVTL 73
           F C++   IS + +IG+ E A   F+   ++  +     ++  +V+A  Q  +  +   L
Sbjct: 172 FVCSA--VISGFCKIGKPELALGFFESAVDSGVLVPNLVTYTTLVSALCQLGKVDEVRDL 229

Query: 74  FETTPEK----NIVSWNGMVSGFVKNGMVAEA----RRVFDAMPVRNVVSWTSMVRGYVQ 125
                ++    + V ++  + G+ K G + +A    R + +    R+VVS++ ++ G  +
Sbjct: 230 VRRLEDEGFEFDCVFYSNWIHGYFKGGALVDALMQDREMVEKGMNRDVVSYSILIDGLSK 289

Query: 126 EGNVEEAERLFWRM----PEKNVVSWTVMLGGLLKDSRVEDARKLFDMM-----PVKDVV 176
           EGNVEEA  L  +M     E N++++T ++ GL K  ++E+A  LF+ +      V + +
Sbjct: 290 EGNVEEALGLLGKMIKEGVEPNLITYTAIIRGLCKMGKLEEAFVLFNRILSVGIEVDEFL 349

Query: 177 AVTNMIGGYCEEGRLEEARALFDEMPKR-------------------------------- 204
            VT +I G C +G L  A ++  +M +R                                
Sbjct: 350 YVT-LIDGICRKGNLNRAFSMLGDMEQRGIQPSILTYNTVINGLCMAGRVSEADEVSKGV 408

Query: 205 --NVVTWTTMVSGYARNRRVDV-----------------------------------ARK 227
             +V+T++T++  Y + + +D                                    A  
Sbjct: 409 VGDVITYSTLLDSYIKVQNIDAVLEIRRRFLEAKIPMDLVMCNILLKAFLLMGAYGEADA 468

Query: 228 LFEVMPERN----EVSWTAMLMGYTHSGRMREASEFFDAM---PVKPVVACNEMIMGFGF 280
           L+  MPE +      ++  M+ GY  +G++ EA E F+ +    V   V  N +I     
Sbjct: 469 LYRAMPEMDLTPDTATYATMIKGYCKTGQIEEALEMFNELRKSSVSAAVCYNRIIDALCK 528

Query: 281 DGDVDRAKAVFEKMRER---------------------DDGTW----------------- 302
            G +D A  V  ++ E+                     D G                   
Sbjct: 529 KGMLDTATEVLIELWEKGLYLDIHTSRTLLHSIHANGGDKGILGLVYGLEQLNSDVCLGM 588

Query: 303 --SAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARL 360
              A++ + +R  FE  A+ ++  M+R+G  + FP               D+ R + A L
Sbjct: 589 LNDAILLLCKRGSFE-AAIEVYMIMRRKGLTVTFPSTILKTLV-------DNLRSLDAYL 640

Query: 361 V------RSEFDQDLYVASALITMYVKCGDLVRA----KWIFNRYPLKDVVMWNSMITGY 410
           +       +    D+   + +I    K G LV+A     +  +R    + + +NS+I G 
Sbjct: 641 LVVNAGETTLSSMDVIDYTIIINGLCKEGFLVKALNLCSFAKSRGVTLNTITYNSLINGL 700

Query: 411 SQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPG 470
            Q G   EAL +F  +   G+ P ++++  ++      G   +  ++ +SM  K  V P 
Sbjct: 701 CQQGCLVEALRLFDSLENIGLVPSEVTYGILIDNLCKEGLFLDAEKLLDSMVSKGLV-PN 759

Query: 471 IEHYACMVDLLGRAGQVNDAVEIVEKMPM---EPDAIVWGSLL-GACRTHMKLDLAEVAV 526
           I  Y  +VD   + GQ  DA+ +V +  M    PDA    S++ G C+   K D+ E A+
Sbjct: 760 IIIYNSIVDGYCKLGQTEDAMRVVSRKMMGRVTPDAFTVSSMIKGYCK---KGDMEE-AL 815

Query: 527 EKLAQLEPKNAGP----YVLLSHMYASKGRWEDVE-VVREKIKTRSVIKL 571
               + + KN       ++ L   + +KGR E+   ++RE + + SV+KL
Sbjct: 816 SVFTEFKDKNISADFFGFLFLIKGFCTKGRMEEARGLLREMLVSESVVKL 865



 Score = 79.3 bits (194), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 98/470 (20%), Positives = 192/470 (40%), Gaps = 88/470 (18%)

Query: 50  TTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNI------VSWNGMVSGFVKNGMVAEARR 103
           ++ ++ +++  + +  +   A+ + E    KN+         + ++SGF K G    A  
Sbjct: 133 SSLTFCSLIYRFVEKGEMDNAIEVLEMMTNKNVNYPFDNFVCSAVISGFCKIGKPELALG 192

Query: 104 VFDA-----MPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV-------VSWT--V 149
            F++     + V N+V++T++V    Q G V+E   L  R+ ++          +W    
Sbjct: 193 FFESAVDSGVLVPNLVTYTTLVSALCQLGKVDEVRDLVRRLEDEGFEFDCVFYSNWIHGY 252

Query: 150 MLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTW 209
             GG L D+ ++D R++ +    +DVV+ + +I G  +EG +EEA  L  +M K  V   
Sbjct: 253 FKGGALVDALMQD-REMVEKGMNRDVVSYSILIDGLSKEGNVEEALGLLGKMIKEGV--- 308

Query: 210 TTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVV 269
                                   E N +++TA++ G    G++ EA   F+        
Sbjct: 309 ------------------------EPNLITYTAIIRGLCKMGKLEEAFVLFNR------- 337

Query: 270 ACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREG 329
                I+  G                E D+  +  +I    RKG    A  +   M++ G
Sbjct: 338 -----ILSVGI---------------EVDEFLYVTLIDGICRKGNLNRAFSMLGDMEQRG 377

Query: 330 AALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDL---- 385
                P                 GR   A  V      D+   S L+  Y+K  ++    
Sbjct: 378 IQ---PSILTYNTVINGLCMA--GRVSEADEVSKGVVGDVITYSTLLDSYIKVQNIDAVL 432

Query: 386 -VRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSA 444
            +R +++  + P+ D+VM N ++  +   G   EA  ++R M    + PD  ++  ++  
Sbjct: 433 EIRRRFLEAKIPM-DLVMCNILLKAFLLMGAYGEADALYRAMPEMDLTPDTATYATMIKG 491

Query: 445 CSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIV 494
              +G+++E  E+F  ++ K  V   +  Y  ++D L + G ++ A E++
Sbjct: 492 YCKTGQIEEALEMFNELR-KSSVSAAV-CYNRIIDALCKKGMLDTATEVL 539



 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 127/285 (44%), Gaps = 41/285 (14%)

Query: 20  TSTGAISRYARIGQIENARKVFDETPHIHRTTS--SWNAMVAAYFQAHQPHQAVTLFETT 77
           T    I+   + G +  A ++FD   +I    S  ++  ++    +      A  L ++ 
Sbjct: 692 TYNSLINGLCQQGCLVEALRLFDSLENIGLVPSEVTYGILIDNLCKEGLFLDAEKLLDSM 751

Query: 78  PEK----NIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVV----SWTSMVRGYVQEGNV 129
             K    NI+ +N +V G+ K G   +A RV     +  V     + +SM++GY ++G++
Sbjct: 752 VSKGLVPNIIIYNSIVDGYCKLGQTEDAMRVVSRKMMGRVTPDAFTVSSMIKGYCKKGDM 811

Query: 130 EEAERLFWRMPEKNVVS----WTVMLGGLLKDSRVEDARKLF-DMMPVKDVVAVTNMIGG 184
           EEA  +F    +KN+ +    +  ++ G     R+E+AR L  +M+  + VV + N +  
Sbjct: 812 EEALSVFTEFKDKNISADFFGFLFLIKGFCTKGRMEEARGLLREMLVSESVVKLINRVDA 871

Query: 185 --------------YCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFE 230
                          CE+GR+ +A  + DE+    +      +  Y R + ++   +  E
Sbjct: 872 ELAESESIRGFLVELCEQGRVPQAIKILDEISS-TIYPSGKNLGSYQRLQFLNDVNE--E 928

Query: 231 VMPERNEV----SWTAMLMGYTHSGRMREASEFFDAMPVKPVVAC 271
            + +++ V    S  + +     SG++ +A+EF     V  V++C
Sbjct: 929 EIKKKDYVHDFHSLHSTVSSLCTSGKLEQANEF-----VMSVLSC 968



 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 110/259 (42%), Gaps = 24/259 (9%)

Query: 274 MIMGFGFDGDVDRAKAVFEKMRER------DDGTWSAMIKVYERKGFELEALGLFARMQR 327
           +I  F   G++D A  V E M  +      D+   SA+I  + + G    ALG F     
Sbjct: 140 LIYRFVEKGEMDNAIEVLEMMTNKNVNYPFDNFVCSAVISGFCKIGKPELALGFFESAVD 199

Query: 328 EGAAL-NFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLV 386
            G  + N                 D  R +  RL    F+ D    S  I  Y K G LV
Sbjct: 200 SGVLVPNLVTYTTLVSALCQLGKVDEVRDLVRRLEDEGFEFDCVFYSNWIHGYFKGGALV 259

Query: 387 RA----KWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVL 442
            A    + +  +   +DVV ++ +I G S+ G  EEAL +   M   GV P+ I++  ++
Sbjct: 260 DALMQDREMVEKGMNRDVVSYSILIDGLSKEGNVEEALGLLGKMIKEGVEPNLITYTAII 319

Query: 443 SACSYSGKVKEGREIFESMKCKYQVEPGIE----HYACMVDLLGRAGQVNDAVEIV---E 495
                 GK++E   +F  +     +  GIE     Y  ++D + R G +N A  ++   E
Sbjct: 320 RGLCKMGKLEEAFVLFNRI-----LSVGIEVDEFLYVTLIDGICRKGNLNRAFSMLGDME 374

Query: 496 KMPMEPDAIVWGSLL-GAC 513
           +  ++P  + + +++ G C
Sbjct: 375 QRGIQPSILTYNTVINGLC 393


>AT5G65560.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:26201012-26203759 REVERSE
           LENGTH=915
          Length = 915

 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 179/362 (49%), Gaps = 47/362 (12%)

Query: 5   YSTLRVCMVQVRFQCTSTGAISRYARIGQIENARKVFDET---PHIHRTTSSWNAMVAAY 61
           + T+R   V ++  C S        R  +  N  K  +ET   P+IH    ++  ++ + 
Sbjct: 320 FPTVRTYTVLIKSLCGS-------ERKSEALNLVKEMEETGIKPNIH----TYTVLIDSL 368

Query: 62  FQAHQPHQAVTLFETTPEK----NIVSWNGMVSGFVKNGMVAEARRVFDAMPVR----NV 113
               +  +A  L     EK    N++++N +++G+ K GM+ +A  V + M  R    N 
Sbjct: 369 CSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNT 428

Query: 114 VSWTSMVRGYVQEGNVEEAERLFWRMPEK----NVVSWTVMLGGLLKDSRVEDARKLFDM 169
            ++  +++GY +  NV +A  +  +M E+    +VV++  ++ G  +    + A +L  +
Sbjct: 429 RTYNELIKGYCK-SNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSL 487

Query: 170 MP----VKDVVAVTNMIGGYCEEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRR 221
           M     V D    T+MI   C+  R+EEA  LFD + ++    NVV +T ++ GY +  +
Sbjct: 488 MNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGK 547

Query: 222 VDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAM---PVKPVVACNEM 274
           VD A  + E M  +    N +++ A++ G    G+++EA+   + M    ++P V+ + +
Sbjct: 548 VDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTI 607

Query: 275 IMG-FGFDGDVDRAKAVFEKM----RERDDGTWSAMIKVYERKGFELEALGLFARMQREG 329
           ++     DGD D A + F++M     + D  T++  I+ Y R+G  L+A  + A+M+  G
Sbjct: 608 LIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENG 667

Query: 330 AA 331
            +
Sbjct: 668 VS 669



 Score =  113 bits (283), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 122/556 (21%), Positives = 235/556 (42%), Gaps = 66/556 (11%)

Query: 20  TSTGAISRYARIGQIENARKVFDETP--HIHRTTSSWNAMVAAYFQAHQPHQAVTLF--- 74
           T T  I  Y +   +++A KVF+E P     R   ++  ++     A +  +A+ LF   
Sbjct: 255 TYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKM 314

Query: 75  ---ETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVR----NVVSWTSMVRGYVQEG 127
              E  P   + ++  ++     +   +EA  +   M       N+ ++T ++     + 
Sbjct: 315 KDDECFP--TVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQC 372

Query: 128 NVEEAERLFWRMPEK----NVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVT---- 179
             E+A  L  +M EK    NV+++  ++ G  K   +EDA  + ++M  + +   T    
Sbjct: 373 KFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYN 432

Query: 180 NMIGGYCEEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMPER 235
            +I GYC +  + +A  + ++M +R    +VVT+ +++ G  R+   D A +L  +M +R
Sbjct: 433 ELIKGYC-KSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDR 491

Query: 236 NEV----SWTAMLMGYTHSGRMREASEFFDAMP---VKP-VVACNEMIMGFGFDGDVDRA 287
             V    ++T+M+     S R+ EA + FD++    V P VV    +I G+   G VD A
Sbjct: 492 GLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEA 551

Query: 288 KAVFEKMRER----DDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXX 343
             + EKM  +    +  T++A+I      G   EA  L  +M + G              
Sbjct: 552 HLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHR 611

Query: 344 XXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLK----D 399
                  DH      +++ S    D +  +  I  Y + G L+ A+ +  +        D
Sbjct: 612 LLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPD 671

Query: 400 VVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLS---------------- 443
           +  ++S+I GY   G    A +V + M  +G  P   +F+ ++                 
Sbjct: 672 LFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPE 731

Query: 444 ACSYSGKVKEGR--EIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMP--- 498
            C+ S  ++     E+ E M  ++ V P  + Y  ++  +   G +  A ++ + M    
Sbjct: 732 LCAMSNMMEFDTVVELLEKM-VEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNE 790

Query: 499 -MEPDAIVWGSLLGAC 513
            + P  +V+ +LL  C
Sbjct: 791 GISPSELVFNALLSCC 806



 Score =  110 bits (274), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 114/530 (21%), Positives = 232/530 (43%), Gaps = 49/530 (9%)

Query: 25  ISRYARIGQIENARKVFDE------TPHIHRTTSSWNAMVAAYFQ---AHQPHQAVT-LF 74
           ++  AR G ++  ++V+ E       P+I+    ++N MV  Y +     + +Q V+ + 
Sbjct: 190 LNSLARFGLVDEMKQVYMEMLEDKVCPNIY----TYNKMVNGYCKLGNVEEANQYVSKIV 245

Query: 75  ETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPV----RNVVSWTSMVRGYVQEGNVE 130
           E   + +  ++  ++ G+ +   +  A +VF+ MP+    RN V++T ++ G      ++
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRID 305

Query: 131 EAERLFWRMPEK----NVVSWTVMLGGLLKDSRVEDARKLFDMMP---VK-DVVAVTNMI 182
           EA  LF +M +      V ++TV++  L    R  +A  L   M    +K ++   T +I
Sbjct: 306 EAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLI 365

Query: 183 GGYCEEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMPER--- 235
              C + + E+AR L  +M ++    NV+T+  +++GY +   ++ A  + E+M  R   
Sbjct: 366 DSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLS 425

Query: 236 -NEVSWTAMLMGYTHSG---RMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVF 291
            N  ++  ++ GY  S     M   ++  +   +  VV  N +I G    G+ D A  + 
Sbjct: 426 PNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLL 485

Query: 292 EKMRER----DDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXX 347
             M +R    D  T+++MI    +     EA  LF  ++++G   N              
Sbjct: 486 SLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKA 545

Query: 348 XXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWI---FNRYPLKDVVMWN 404
              D    +  +++      +    +ALI      G L  A  +     +  L+  V  +
Sbjct: 546 GKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTD 605

Query: 405 S-MITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKC 463
           + +I    + G  + A + F+ M  SG  PD  ++   +      G++ +  ++   M+ 
Sbjct: 606 TILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMR- 664

Query: 464 KYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKM---PMEPDAIVWGSLL 510
           +  V P +  Y+ ++   G  GQ N A +++++M     EP    + SL+
Sbjct: 665 ENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLI 714



 Score =  109 bits (272), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 111/498 (22%), Positives = 216/498 (43%), Gaps = 85/498 (17%)

Query: 74  FETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAM----PVRNVVSWTSMVRGYVQEGNV 129
           FE   +  I  +N +++   + G+V E ++V+  M       N+ ++  MV GY + GNV
Sbjct: 175 FELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNV 234

Query: 130 EEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEG 189
           EEA +   ++ E           GL                   D    T++I GYC+  
Sbjct: 235 EEANQYVSKIVE----------AGL-----------------DPDFFTYTSLIMGYCQRK 267

Query: 190 RLEEARALFDEMP----KRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEV----SWT 241
            L+ A  +F+EMP    +RN V +T ++ G    RR+D A  LF  M +        ++T
Sbjct: 268 DLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYT 327

Query: 242 AMLMGYTHSGRMREASEFFDAMP---VKPVV-ACNEMIMGFGFDGDVDRAKAVFEKMRER 297
            ++     S R  EA      M    +KP +     +I         ++A+ +  +M E+
Sbjct: 328 VLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEK 387

Query: 298 ----DDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHG 353
               +  T++A+I  Y ++G   +A+ +   M+    + N                    
Sbjct: 388 GLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPN-------------------- 427

Query: 354 RQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQH 413
            + +  L++     +++ A  ++              +  R  L DVV +NS+I G  + 
Sbjct: 428 TRTYNELIKGYCKSNVHKAMGVLN------------KMLERKVLPDVVTYNSLIDGQCRS 475

Query: 414 GLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEH 473
           G  + A  +   M   G+ PD  ++  ++ +   S +V+E  ++F+S++ K  V P +  
Sbjct: 476 GNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQK-GVNPNVVM 534

Query: 474 YACMVDLLGRAGQVNDAVEIVEKMPME---PDAIVWGSLLGACRTHMKLDLAEVAVEKLA 530
           Y  ++D   +AG+V++A  ++EKM  +   P+++ + +L+       KL  A +  EK+ 
Sbjct: 535 YTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMV 594

Query: 531 Q--LEPKNAGPYVLLSHM 546
           +  L+P  +   +L+  +
Sbjct: 595 KIGLQPTVSTDTILIHRL 612


>AT1G63130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:23412854-23414746 FORWARD
           LENGTH=630
          Length = 630

 Score =  119 bits (299), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 111/450 (24%), Positives = 202/450 (44%), Gaps = 72/450 (16%)

Query: 53  SWNAMVAAYFQAHQPHQAVTLFETTPEK----NIVSWNGMVSGFVKNGMVAEARRVFDAM 108
           ++N ++   F+ ++  +AV L +    K    ++V++  +V+G  K G +  A  +   M
Sbjct: 188 TFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKM 247

Query: 109 PVRN----VVSWTSMVRGYVQEGNVEEAERLFWRMPEK----NVVSWTVMLGGLLKDSRV 160
                   VV + +++       NV +A  LF  M  K    NVV++  ++  L    R 
Sbjct: 248 EQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRW 307

Query: 161 EDARKLF-DMMPVK---DVVAVTNMIGGYCEEGRLEEARALFDEMPKR----NVVTWTTM 212
            DA +L  DM+  K   +VV  + +I  + +EG+L EA  L+DEM KR    ++ T++++
Sbjct: 308 SDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL 367

Query: 213 VSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAMP---- 264
           ++G+  + R+D A+ +FE+M  +    N V++  ++ G+  + R+ E  E F  M     
Sbjct: 368 INGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGL 427

Query: 265 VKPVVACNEMIMGFGFDGDVDRAKAVFEKMRER----DDGTWSAMIKVYERKGFELEALG 320
           V   V    +I GF    + D A+ VF++M       D  T+S ++      G    AL 
Sbjct: 428 VGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALV 487

Query: 321 LFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYV 380
           +F  +QR                                   S+ + D+Y  + +I    
Sbjct: 488 VFEYLQR-----------------------------------SKMEPDIYTYNIMIEGMC 512

Query: 381 KCGDLVRAKWIFNRYPLK----DVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDI 436
           K G +     +F    LK    +VV + +M++G+ + GL EEA  +FR+M   G  PD  
Sbjct: 513 KAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSG 572

Query: 437 SFIGVLSACSYSGKVKEGREIFESMK-CKY 465
           ++  ++ A    G      E+   M+ C++
Sbjct: 573 TYNTLIRAHLRDGDKAASAELIREMRSCRF 602



 Score =  100 bits (250), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 107/471 (22%), Positives = 201/471 (42%), Gaps = 66/471 (14%)

Query: 79  EKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVR----NVVSWTSMVRGYVQEGNVEEAER 134
           E +IV+ N +++GF     +++A  +   M       +  ++ +++ G  +     EA  
Sbjct: 148 EPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVA 207

Query: 135 LFWRMPEK----NVVSWTVMLGGLLKDSRVEDARKLFDMMPVKD----VVAVTNMIGGYC 186
           L  RM  K    ++V++ +++ GL K   ++ A  L   M        VV    +I   C
Sbjct: 208 LVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALC 267

Query: 187 EEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEV 238
               + +A  LF EM  +    NVVT+ +++       R   A +L   M ER    N V
Sbjct: 268 NYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVV 327

Query: 239 SWTAMLMGYTHSGRMREASEFFDAM---PVKP-VVACNEMIMGFGFDGDVDRAKAVFEKM 294
           +++A++  +   G++ EA + +D M    + P +   + +I GF     +D AK +FE M
Sbjct: 328 TFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM 387

Query: 295 RERDDG----TWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXX 350
             +D      T++ +IK + +     E + LF  M + G   N                 
Sbjct: 388 ISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGN---------------TV 432

Query: 351 DHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGY 410
            +   +H      E D    V   +++  V                L D++ ++ ++ G 
Sbjct: 433 TYTTLIHGFFQARECDNAQIVFKQMVSDGV----------------LPDIMTYSILLDGL 476

Query: 411 SQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPG 470
             +G  E AL VF  +  S + PD  ++  ++     +GKV++G ++F S+  K  V+P 
Sbjct: 477 CNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK-GVKPN 535

Query: 471 IEHYACMVDLLGRAGQVNDAVEIVEKMPME---PDAIVWGSLLGACRTHMK 518
           +  Y  M+    R G   +A  +  +M  E   PD+  + +L+   R H++
Sbjct: 536 VVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLI---RAHLR 583



 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 77/424 (18%), Positives = 173/424 (40%), Gaps = 76/424 (17%)

Query: 155 LKDSRVEDARKLF-DMM---PVKDVVAVTNMIGGYCEEGRLEEARALFDEMPK----RNV 206
           L D +++DA  LF DM+   P   +V  + ++    +  + +   +L ++M       N+
Sbjct: 57  LNDLKLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNL 116

Query: 207 VTWTTMVSGYARNRRVDVA----RKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDA 262
            T++ +++ + R  ++ +A     K+ ++  E + V+  ++L G+ H  R+ +A      
Sbjct: 117 YTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQ 176

Query: 263 MPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLF 322
           M          + MG+                 + D  T++ +I    R     EA+ L 
Sbjct: 177 M----------VEMGY-----------------QPDSFTFNTLIHGLFRHNRASEAVALV 209

Query: 323 ARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKC 382
            RM  +G   +                  +G  V+    R + D  L +   +    ++ 
Sbjct: 210 DRMVVKGCQPDL---------------VTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEP 254

Query: 383 GDLVRAKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVL 442
           G                VV++N++I     +    +ALN+F +M   G+ P+ +++  ++
Sbjct: 255 G----------------VVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLI 298

Query: 443 SACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKM---PM 499
                 G+  +   +   M  + ++ P +  ++ ++D   + G++ +A ++ ++M    +
Sbjct: 299 RCLCNYGRWSDASRLLSDM-IERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 357

Query: 500 EPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLE--PKNAGPYVLLSHMYASKGRWEDVE 557
           +PD   + SL+     H +LD A+   E +   +  P       L+     +K   E +E
Sbjct: 358 DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGME 417

Query: 558 VVRE 561
           + RE
Sbjct: 418 LFRE 421


>AT1G62670.1 | Symbols: RPF2 | rna processing factor 2 |
           chr1:23204773-23206665 REVERSE LENGTH=630
          Length = 630

 Score =  119 bits (298), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 106/446 (23%), Positives = 204/446 (45%), Gaps = 36/446 (8%)

Query: 53  SWNAMVAAYFQAHQPHQAVTL----FETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAM 108
           + ++++  Y  + +  +AV L    F T  + N V++N ++ G   +   +EA  + D M
Sbjct: 153 TLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRM 212

Query: 109 PVR----NVVSWTSMVRGYVQEGNVEEAERLFWRMP----EKNVVSWTVMLGGLLKDSRV 160
             +    ++V++  +V G  + G+ + A  L  +M     E  V+ +  ++ GL K   +
Sbjct: 213 VAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHM 272

Query: 161 EDARKLFDMMPVK----DVVAVTNMIGGYCEEGRLEEARALFDEMPKR----NVVTWTTM 212
           +DA  LF  M  K    +VV  +++I   C  GR  +A  L  +M +R    +V T++ +
Sbjct: 273 DDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSAL 332

Query: 213 VSGYARNRRVDVARKLFEVMPERNE----VSWTAMLMGYTHSGRMREASEFFDAMPVK-- 266
           +  + +  ++  A KL++ M +R+     V++++++ G+    R+ EA + F+ M  K  
Sbjct: 333 IDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHC 392

Query: 267 --PVVACNEMIMGFGFDGDVDRAKAVFEKMRER----DDGTWSAMIKVYERKGFELEALG 320
              VV  N +I GF     V+    VF +M +R    +  T++ +I+   + G    A  
Sbjct: 393 FPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQE 452

Query: 321 LFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYV 380
           +F  M  +G   N                 +    V   L RS+ +  +Y  + +I    
Sbjct: 453 IFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMC 512

Query: 381 KCGDLVRAKWIFNRYPLK----DVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDI 436
           K G +     +F    LK    DVV +N+MI+G+ + G  EEA  +F++M   G  P+  
Sbjct: 513 KAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSG 572

Query: 437 SFIGVLSACSYSGKVKEGREIFESMK 462
            +  ++ A    G  +   E+ + M+
Sbjct: 573 CYNTLIRARLRDGDREASAELIKEMR 598



 Score =  102 bits (254), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 115/533 (21%), Positives = 226/533 (42%), Gaps = 42/533 (7%)

Query: 70  AVTLF----ETTPEKNIVSWNGMVSGFVK----NGMVAEARRVFDAMPVRNVVSWTSMVR 121
           AV LF    ++ P  +I+ ++ ++S   K    + +++   ++ +     N  +++ ++ 
Sbjct: 65  AVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILIN 124

Query: 122 GYVQEGNVEEAERLFWRMP----EKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVK---- 173
            + +   +  A  +  +M     E N+V+ + +L G     R+ +A  L D M V     
Sbjct: 125 CFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQP 184

Query: 174 DVVAVTNMIGGYCEEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLF 229
           + V    +I G     +  EA AL D M  +    ++VT+  +V+G  +    D+A  L 
Sbjct: 185 NTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLL 244

Query: 230 EVMP----ERNEVSWTAMLMGYTHSGRMREASEFFDAMPVK----PVVACNEMIMGFGFD 281
             M     E   + +  ++ G      M +A   F  M  K     VV  + +I      
Sbjct: 245 NKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNY 304

Query: 282 GDVDRAKAVFEKMRER----DDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXX 337
           G    A  +   M ER    D  T+SA+I  + ++G  +EA  L+  M +     +    
Sbjct: 305 GRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTY 364

Query: 338 XXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIF----N 393
                        D  +Q+   +V      D+   + LI  + K   +     +F     
Sbjct: 365 SSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQ 424

Query: 394 RYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKE 453
           R  + + V +N +I G  Q G  + A  +F++M   GVPP+ +++  +L     +GK+++
Sbjct: 425 RGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEK 484

Query: 454 GREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPM---EPDAIVWGSLL 510
              +FE ++ + ++EP I  Y  M++ + +AG+V D  ++   + +   +PD + + +++
Sbjct: 485 AMVVFEYLQ-RSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMI 543

Query: 511 -GACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKG-RWEDVEVVRE 561
            G CR   K +   +  E        N+G Y  L       G R    E+++E
Sbjct: 544 SGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKE 596


>AT3G22470.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:7966066-7967925 REVERSE
           LENGTH=619
          Length = 619

 Score =  118 bits (296), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 109/455 (23%), Positives = 203/455 (44%), Gaps = 31/455 (6%)

Query: 137 WRMP-EKNVVSWTVMLGGLLKDSRVEDARKLFD-MMPVK---DVVAVTNMIGGYCEEGRL 191
           W++  E + ++++ ++ G   + RV +A  L D M+ +K   D+V V+ +I G C +GR+
Sbjct: 132 WKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRV 191

Query: 192 EEARALFDEMP----KRNVVTWTTMVSGYARNRRVDVARKLFEVMPERN----EVSWTAM 243
            EA  L D M     + + VT+  +++   ++    +A  LF  M ERN     V ++ +
Sbjct: 192 SEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIV 251

Query: 244 LMGYTHSGRMREASEFFDAMPVK----PVVACNEMIMGFGFDGDVDRAKAVFEKMRER-- 297
           +      G   +A   F+ M +K     VV  + +I G   DG  D    +  +M  R  
Sbjct: 252 IDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNI 311

Query: 298 --DDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQ 355
             D  T+SA+I V+ ++G  LEA  L+  M   G A +                     Q
Sbjct: 312 IPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQ 371

Query: 356 VHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLK----DVVMWNSMITGYS 411
           +   +V    + D+   S LI  Y K   +     +F     K    + + +N+++ G+ 
Sbjct: 372 MFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFC 431

Query: 412 QHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGI 471
           Q G    A  +F++M   GVPP  +++  +L     +G++ +  EIFE M+ K ++  GI
Sbjct: 432 QSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQ-KSRMTLGI 490

Query: 472 EHYACMVDLLGRAGQVNDAVEIVEKMP---MEPDAIVWGSLLGACRTHMKLDLAEVAVEK 528
             Y  ++  +  A +V+DA  +   +    ++PD + +  ++G       L  A++   K
Sbjct: 491 GIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRK 550

Query: 529 LAQ--LEPKNAGPYVLLSHMYASKGRWEDVEVVRE 561
           + +    P +    +L+       G    VE++ E
Sbjct: 551 MKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEE 585



 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 156/320 (48%), Gaps = 34/320 (10%)

Query: 24  AISRYARIGQIENARKVFDETPH--IHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKN 81
            I    + G  ++A  +F+E     I     ++++++       +      +      +N
Sbjct: 251 VIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRN 310

Query: 82  I----VSWNGMVSGFVKNGMVAEARRVFDAMPVRNV----VSWTSMVRGYVQEGNVEEAE 133
           I    V+++ ++  FVK G + EA+ +++ M  R +    +++ S++ G+ +E  + EA 
Sbjct: 311 IIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEAN 370

Query: 134 RLFWRMPEK----NVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVT----NMIGGY 185
           ++F  M  K    ++V++++++    K  RV+D  +LF  +  K ++  T     ++ G+
Sbjct: 371 QMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGF 430

Query: 186 CEEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMPERNEV--- 238
           C+ G+L  A+ LF EM  R    +VVT+  ++ G   N  ++ A ++FE M +       
Sbjct: 431 CQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGI 490

Query: 239 -SWTAMLMGYTHSGRMREASEFFDAMP---VKP-VVACNEMIMGFGFDGDVDRAKAVFEK 293
             +  ++ G  ++ ++ +A   F ++    VKP VV  N MI G    G +  A  +F K
Sbjct: 491 GIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRK 550

Query: 294 MRER----DDGTWSAMIKVY 309
           M+E     DD T++ +I+ +
Sbjct: 551 MKEDGCTPDDFTYNILIRAH 570


>AT5G01110.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:42114-44303 REVERSE
           LENGTH=729
          Length = 729

 Score =  116 bits (291), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 121/511 (23%), Positives = 221/511 (43%), Gaps = 46/511 (9%)

Query: 143 NVVSWTVMLGGLLKDSRVEDARKLFDMMPVK----DVVAVTNMIGGYCEEGRLEEARALF 198
           NV +  +M+  L KD ++E        +  K    D+V    +I  Y  +G +EEA  L 
Sbjct: 234 NVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELM 293

Query: 199 DEMPKRN----VVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHS 250
           + MP +     V T+ T+++G  ++ + + A+++F  M       +  ++ ++LM     
Sbjct: 294 NAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKK 353

Query: 251 GRMREASEFFDAM---PVKPVVAC-NEMIMGFGFDGDVDRAKAVFEKMRER----DDGTW 302
           G + E  + F  M    V P + C + M+  F   G++D+A   F  ++E     D+  +
Sbjct: 354 GDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIY 413

Query: 303 SAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVR 362
           + +I+ Y RKG    A+ L   M ++G A++                     ++   +  
Sbjct: 414 TILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTE 473

Query: 363 SEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLK----DVVMWNSMITGYSQHGLGEE 418
                D Y  + LI  + K G+L  A  +F +   K    DVV +N+++ G+ + G  + 
Sbjct: 474 RALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDT 533

Query: 419 ALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMV 478
           A  ++ DM    + P  IS+  +++A    G + E   +++ M  K  ++P +     M+
Sbjct: 534 AKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISK-NIKPTVMICNSMI 592

Query: 479 DLLGRAGQVNDAVEIVEKMPME---PDAIVWGSLLGACRTHMKLDLAEVAVEKLAQ---- 531
               R+G  +D    +EKM  E   PD I + +L+        +  A   V+K+ +    
Sbjct: 593 KGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGG 652

Query: 532 LEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVIKLPGYSWIEVEKKAHMFVGGDN 591
           L P +   Y  + H +  + + ++ EVV  K+  R V   P  S          FV  DN
Sbjct: 653 LVP-DVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVN--PDRSTYTCMING--FVSQDN 707

Query: 592 NCHPEQPIIMKMLERLDGLLRDAGYSPDHSF 622
                + I  +ML+R        G+SPD  F
Sbjct: 708 LTEAFR-IHDEMLQR--------GFSPDDKF 729



 Score =  112 bits (279), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 101/447 (22%), Positives = 195/447 (43%), Gaps = 38/447 (8%)

Query: 53  SWNAMVAAYFQAHQPHQAVTLFETTPEKN----IVSWNGMVSGFVKNGMVAEARRVFDAM 108
           ++N +++AY       +A  L    P K     + ++N +++G  K+G    A+ VF  M
Sbjct: 272 TYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEM 331

Query: 109 PVRNV----VSWTSMVRGYVQEGNVEEAERLFWRMPEKNVV----SWTVMLGGLLKDSRV 160
               +     ++ S++    ++G+V E E++F  M  ++VV     ++ M+    +   +
Sbjct: 332 LRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNL 391

Query: 161 EDARKLFDMMP----VKDVVAVTNMIGGYCEEGRLEEARALFDEMPKR----NVVTWTTM 212
           + A   F+ +     + D V  T +I GYC +G +  A  L +EM ++    +VVT+ T+
Sbjct: 392 DKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTI 451

Query: 213 VSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAMPVK-- 266
           + G  + + +  A KLF  M ER    +  + T ++ G+   G ++ A E F  M  K  
Sbjct: 452 LHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRI 511

Query: 267 --PVVACNEMIMGFGFDGDVDRAKAVFEKMRERD----DGTWSAMIKVYERKGFELEALG 320
              VV  N ++ GFG  GD+D AK ++  M  ++      ++S ++     KG   EA  
Sbjct: 512 RLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFR 571

Query: 321 LFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYV 380
           ++  M  +                        G     +++   F  D    + LI  +V
Sbjct: 572 VWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFV 631

Query: 381 KCGDLVRAKWIFNRYP------LKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPD 434
           +  ++ +A  +  +        + DV  +NS++ G+ +    +EA  V R M   GV PD
Sbjct: 632 REENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPD 691

Query: 435 DISFIGVLSACSYSGKVKEGREIFESM 461
             ++  +++       + E   I + M
Sbjct: 692 RSTYTCMINGFVSQDNLTEAFRIHDEM 718



 Score = 75.9 bits (185), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 153/359 (42%), Gaps = 64/359 (17%)

Query: 176 VAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMPER 235
           ++++ MI      GRL +A++    M +R         SG +R   V+     F      
Sbjct: 114 LSLSAMIHILVRSGRLSDAQSCLLRMIRR---------SGVSRLEIVNSLDSTFSNCGSN 164

Query: 236 NEVSWTAMLMGYTHSGRMREASEFFDAMPVK----PVVACNEMIMGFGFDGDVDRAKAVF 291
           + V +  ++  Y  + ++REA E F  +  K     + ACN +I      G V+ A  V+
Sbjct: 165 DSV-FDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVY 223

Query: 292 EKMRERDDG----TWSAMIKVYERKGFELEALGLF-ARMQREGAALNFPXXXXXXXXXXX 346
           +++     G    T + M+    + G ++E +G F +++Q +G    +P           
Sbjct: 224 QEISRSGVGINVYTLNIMVNALCKDG-KMEKVGTFLSQVQEKGV---YP----------- 268

Query: 347 XXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKD----VVM 402
                                D+   + LI+ Y   G +  A  + N  P K     V  
Sbjct: 269 ---------------------DIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYT 307

Query: 403 WNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMK 462
           +N++I G  +HG  E A  VF +M  SG+ PD  ++  +L      G V E  ++F  M+
Sbjct: 308 YNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMR 367

Query: 463 CKYQVEPGIEHYACMVDLLGRAGQVNDAV---EIVEKMPMEPDAIVWGSLL-GACRTHM 517
            +  V P +  ++ M+ L  R+G ++ A+     V++  + PD +++  L+ G CR  M
Sbjct: 368 SR-DVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGM 425



 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 98/197 (49%), Gaps = 20/197 (10%)

Query: 28  YARIGQIENARKVFDE--TPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNI--- 82
           + ++G I+ A++++ +  +  I  T  S++ +V A        +A  +++    KNI   
Sbjct: 525 FGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPT 584

Query: 83  -VSWNGMVSGFVKNGMVAEARRVFDAMP----VRNVVSWTSMVRGYVQEGNVEEAERLFW 137
            +  N M+ G+ ++G  ++     + M     V + +S+ +++ G+V+E N+ +A  L  
Sbjct: 585 VMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVK 644

Query: 138 RMPEK------NVVSWTVMLGGLLKDSRVEDA----RKLFDMMPVKDVVAVTNMIGGYCE 187
           +M E+      +V ++  +L G  + +++++A    RK+ +     D    T MI G+  
Sbjct: 645 KMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVS 704

Query: 188 EGRLEEARALFDEMPKR 204
           +  L EA  + DEM +R
Sbjct: 705 QDNLTEAFRIHDEMLQR 721


>AT1G12300.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:4184163-4186076 REVERSE
           LENGTH=637
          Length = 637

 Score =  115 bits (289), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 175/337 (51%), Gaps = 36/337 (10%)

Query: 32  GQIENARKVFDETPHIHRTTS--SWNAMVAAYFQAHQPHQAVTLFETTPEK----NIVSW 85
           G ++NA  +F+E      TT+  ++N ++  +  A +      L     ++    N+V++
Sbjct: 277 GSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTF 336

Query: 86  NGMVSGFVKNGMVAEARRVFDAMPVRNV----VSWTSMVRGYVQEGNVEEAERLFWRMPE 141
           + ++  FVK G + EA  +   M  R +    +++TS++ G+ +E ++++A ++   M  
Sbjct: 337 SVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVS 396

Query: 142 K----NVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVT----NMIGGYCEEGRLEE 193
           K    N+ ++ +++ G  K +R++D  +LF  M ++ VVA T     +I G+CE G+L  
Sbjct: 397 KGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNV 456

Query: 194 ARALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVS-----WTAML 244
           A+ LF EM  R    N+VT+  ++ G   N   + A ++FE + E++++      +  ++
Sbjct: 457 AKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKI-EKSKMELDIGIYNIII 515

Query: 245 MGYTHSGRMREASEFFDAMP---VKPVVAC-NEMIMGFGFDGDVDRAKAVFEKMRER--- 297
            G  ++ ++ +A + F ++P   VKP V   N MI G    G +  A+ +F KM E    
Sbjct: 516 HGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHA 575

Query: 298 -DDGTWSAMIKVYERKGFELEALGLFARMQREGAALN 333
            D  T++ +I+ +   G   +++ L   ++R G +++
Sbjct: 576 PDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVD 612



 Score =  108 bits (271), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 107/503 (21%), Positives = 216/503 (42%), Gaps = 51/503 (10%)

Query: 3   YGYSTLRVCMVQVRFQCTSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYF 62
           Y  S +  C  + R  C +  A+ +  ++G   N              T +++ ++    
Sbjct: 124 YTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPN--------------TITFSTLINGLC 169

Query: 63  QAHQPHQAVTLFETTPE----KNIVSWNGMVSGFVKNGMVAEARRVFDAM----PVRNVV 114
              +  +A+ L +   E     ++++ N +V+G   +G  AEA  + D M       N V
Sbjct: 170 LEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAV 229

Query: 115 SWTSMVRGYVQEGNVEEAERLFWRMPEKNV----VSWTVMLGGLLKDSRVEDARKLFDMM 170
           ++  ++    + G    A  L  +M E+N+    V +++++ GL K   +++A  LF+ M
Sbjct: 230 TYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEM 289

Query: 171 PVK----DVVAVTNMIGGYCEEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRRV 222
            +K    +++    +IGG+C  GR ++   L  +M KR    NVVT++ ++  + +  ++
Sbjct: 290 EMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKL 349

Query: 223 DVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAMPVK----PVVACNEM 274
             A +L + M  R    + +++T+++ G+     + +A++  D M  K     +   N +
Sbjct: 350 REAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNIL 409

Query: 275 IMGFGFDGDVDRAKAVFEKMRER----DDGTWSAMIKVYERKGFELEALGLFARMQREGA 330
           I G+     +D    +F KM  R    D  T++ +I+ +   G    A  LF  M     
Sbjct: 410 INGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKV 469

Query: 331 ALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKW 390
             N                 +   ++  ++ +S+ + D+ + + +I        +  A  
Sbjct: 470 PPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWD 529

Query: 391 IFNRYPLKDVV----MWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACS 446
           +F   PLK V      +N MI G  + G   EA  +FR M   G  PD  ++  ++ A  
Sbjct: 530 LFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHL 589

Query: 447 YSGKVKEGREIFESMK-CKYQVE 468
             G   +  ++ E +K C + V+
Sbjct: 590 GDGDATKSVKLIEELKRCGFSVD 612



 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 109/490 (22%), Positives = 210/490 (42%), Gaps = 74/490 (15%)

Query: 79  EKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVR----NVVSWTSMVRGYVQEGNVEEAER 134
           E N ++++ +++G    G V+EA  + D M       ++++  ++V G    G   EA  
Sbjct: 155 EPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAML 214

Query: 135 LFWRMPE----KNVVSWTVMLGGLLKDSRVEDARKLFDMMPVK----DVVAVTNMIGGYC 186
           L  +M E     N V++  +L  + K  +   A +L   M  +    D V  + +I G C
Sbjct: 215 LIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLC 274

Query: 187 EEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEV 238
           + G L+ A  LF+EM  +    N++T+  ++ G+    R D   KL   M +R    N V
Sbjct: 275 KHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVV 334

Query: 239 SWTAMLMGYTHSGRMREASEFFDAM---PVKP-VVACNEMIMGFGFDGDVDRAKAVFEKM 294
           +++ ++  +   G++REA E    M    + P  +    +I GF  +  +D+A  + + M
Sbjct: 335 TFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLM 394

Query: 295 RER----DDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXX 350
             +    +  T++ +I  Y +     + L LF +M   G                     
Sbjct: 395 VSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVV------------------- 435

Query: 351 DHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIF----NRYPLKDVVMWNSM 406
                            D    + LI  + + G L  AK +F    +R    ++V +  +
Sbjct: 436 ----------------ADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKIL 479

Query: 407 ITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQ 466
           + G   +G  E+AL +F  +  S +  D   +  ++     + KV +  ++F S+  K  
Sbjct: 480 LDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLK-G 538

Query: 467 VEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPME---PDAIVWGSLLGACRTHMKLDLAE 523
           V+PG++ Y  M+  L + G +++A  +  KM  +   PD   +  L+   R H+    A 
Sbjct: 539 VKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILI---RAHLGDGDAT 595

Query: 524 VAVEKLAQLE 533
            +V+ + +L+
Sbjct: 596 KSVKLIEELK 605


>AT1G62910.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23299060-23300958 FORWARD
           LENGTH=632
          Length = 632

 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/481 (22%), Positives = 219/481 (45%), Gaps = 73/481 (15%)

Query: 20  TSTGAISRYARIGQIENARKVFDETPHI--HRTTSSWNAMVAAYFQAHQPHQAVTLFETT 77
           T +  ++ Y    +I +A  + D+   +     T ++  ++   F  ++  +AV L +  
Sbjct: 155 TLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQM 214

Query: 78  PEK----NIVSWNGMVSGFVKNGMVAEARRVFDAMPV----RNVVSWTSMVRGYVQEGNV 129
            ++    ++V++  +V+G  K G +  A  +   M       +VV + +++ G  +  ++
Sbjct: 215 VQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHM 274

Query: 130 EEAERLFWRMPEK----NVVSWTVMLGGLLKDSRVEDARKLF-DMMPVK---DVVAVTNM 181
           ++A  LF  M  K    +V +++ ++  L    R  DA +L  DM+  K   +VV  + +
Sbjct: 275 DDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSAL 334

Query: 182 IGGYCEEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMPER-- 235
           I  + +EG+L EA  L+DEM KR    ++ T++++++G+  + R+D A+ +FE+M  +  
Sbjct: 335 IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 394

Query: 236 --NEVSWTAMLMGYTHSGRMREASEFFDAMP----VKPVVACNEMIMGFGFDGDVDRAKA 289
             N V+++ ++ G+  + R+ E  E F  M     V   V    +I GF    D D A+ 
Sbjct: 395 FPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQM 454

Query: 290 VFEKMRE----RDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXX 345
           VF++M       +  T++ ++    + G   +A+ +F  +QR                  
Sbjct: 455 VFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQR------------------ 496

Query: 346 XXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLK----DVV 401
                            S  + D+Y  + +I    K G +     +F    LK    +V+
Sbjct: 497 -----------------STMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVI 539

Query: 402 MWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESM 461
            +N+MI+G+ + G  EEA ++ + M   G  P+  ++  ++ A    G  +   E+ + M
Sbjct: 540 AYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEM 599

Query: 462 K 462
           +
Sbjct: 600 R 600



 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 144/287 (50%), Gaps = 28/287 (9%)

Query: 73  LFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVR----NVVSWTSMVRGYVQEGN 128
           + E     N+V+++ ++  FVK G + EA +++D M  R    ++ +++S++ G+     
Sbjct: 319 MIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDR 378

Query: 129 VEEAERLFWRMPEK----NVVSWTVMLGGLLKDSRVEDARKLFDMMP----VKDVVAVTN 180
           ++EA+ +F  M  K    NVV+++ ++ G  K  RVE+  +LF  M     V + V  T 
Sbjct: 379 LDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTT 438

Query: 181 MIGGYCEEGRLEEARALFDEMPK----RNVVTWTTMVSGYARNRRVDVARKLFEVMP--- 233
           +I G+ +    + A+ +F +M       N++T+  ++ G  +N ++  A  +FE +    
Sbjct: 439 LIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRST 498

Query: 234 -ERNEVSWTAMLMGYTHSGRMREASEFFDAMPVK----PVVACNEMIMGFGFDGDVDRAK 288
            E +  ++  M+ G   +G++ +  E F  + +K     V+A N MI GF   G  + A 
Sbjct: 499 MEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEAD 558

Query: 289 AVFEKMRER----DDGTWSAMIKVYERKGFELEALGLFARMQREGAA 331
           ++ +KM+E     + GT++ +I+   R G    +  L   M+  G A
Sbjct: 559 SLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFA 605



 Score =  103 bits (256), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 102/465 (21%), Positives = 209/465 (44%), Gaps = 63/465 (13%)

Query: 79  EKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVR----NVVSWTSMVRGYVQEGNVEEAER 134
           E +IV+ + +++G+  +  +++A  + D M       +  ++T+++ G        EA  
Sbjct: 150 EPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVA 209

Query: 135 LFWRMPEK----NVVSWTVMLGGLLKDSRVEDARKLFDMMPV----KDVVAVTNMIGGYC 186
           L  +M ++    ++V++  ++ GL K   ++ A  L   M       DVV    +I G C
Sbjct: 210 LVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLC 269

Query: 187 EEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEV 238
           +   +++A  LF EM  +    +V T+++++S      R   A +L   M ER    N V
Sbjct: 270 KYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVV 329

Query: 239 SWTAMLMGYTHSGRMREASEFFDAM---PVKP-VVACNEMIMGFGFDGDVDRAKAVFEKM 294
           +++A++  +   G++ EA + +D M    + P +   + +I GF     +D AK +FE M
Sbjct: 330 TFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM 389

Query: 295 RERDDG----TWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXX 350
             +D      T+S +IK + +     E + LF  M + G   N                 
Sbjct: 390 ISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGN---------------TV 434

Query: 351 DHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGY 410
            +   +H      + D    V   ++++ V              +P  +++ +N ++ G 
Sbjct: 435 TYTTLIHGFFQARDCDNAQMVFKQMVSVGV--------------HP--NILTYNILLDGL 478

Query: 411 SQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPG 470
            ++G   +A+ VF  +  S + PD  ++  ++     +GKV++G E+F ++  K  V P 
Sbjct: 479 CKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLK-GVSPN 537

Query: 471 IEHYACMVDLLGRAGQVNDAVEIVEKMPME---PDAIVWGSLLGA 512
           +  Y  M+    R G   +A  +++KM  +   P++  + +L+ A
Sbjct: 538 VIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRA 582



 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 106/506 (20%), Positives = 209/506 (41%), Gaps = 74/506 (14%)

Query: 129 VEEAERLFWRM----PEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPV----KDVVAVTN 180
           V++A  LF  M    P  ++V +  +L  + K ++ E    L + M       D+   + 
Sbjct: 64  VDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSI 123

Query: 181 MIGGYCEEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMPER- 235
            I  +C   +L  A A+  +M K     ++VT +++++GY  ++R+  A  L + M E  
Sbjct: 124 FINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 183

Query: 236 ---NEVSWTAMLMGYTHSGRMREASEFFDAMPVK----PVVACNEMIMGFGFDGDVDRAK 288
              +  ++T ++ G     +  EA    D M  +     +V    ++ G    GD+D A 
Sbjct: 184 YKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLAL 243

Query: 289 AVFEKMR----ERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXX 344
           ++ +KM     E D   ++ +I    +     +AL LF  M  +G   +           
Sbjct: 244 SLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCL 303

Query: 345 XXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFN----RYPLKDV 400
                     ++ + ++  + + ++   SALI  +VK G LV A+ +++    R    D+
Sbjct: 304 CNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 363

Query: 401 VMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFES 460
             ++S+I G+  H   +EA ++F  M      P+ +++  ++     + +V+EG E+F  
Sbjct: 364 FTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFRE 423

Query: 461 MKCK----------------YQ------------------VEPGIEHYACMVDLLGRAGQ 486
           M  +                +Q                  V P I  Y  ++D L + G+
Sbjct: 424 MSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGK 483

Query: 487 VNDAV---EIVEKMPMEPDAIVWGSLL-GACRTHMKLDLAEVAVEKLAQLEPKNAGPYVL 542
           +  A+   E +++  MEPD   +  ++ G C+        E   E    L  K   P V+
Sbjct: 484 LAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGK----VEDGWELFCNLSLKGVSPNVI 539

Query: 543 LSHM----YASKGRWEDVEVVREKIK 564
             +     +  KG  E+ + + +K+K
Sbjct: 540 AYNTMISGFCRKGSKEEADSLLKKMK 565


>AT5G16640.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:5461031-5462545 FORWARD
           LENGTH=504
          Length = 504

 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 169/348 (48%), Gaps = 34/348 (9%)

Query: 20  TSTGAISRYARIGQIENARKVFDETPHIHRTTSS--WNAMVAAYFQAHQPHQAVTLFETT 77
           T    ++ + R  ++ +A  +FD+   +    +   +N ++    ++ Q   A+ L    
Sbjct: 153 TFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRM 212

Query: 78  PEKNI----VSWNGMVSGFVKNGMVAEARRVFDAMPVR----NVVSWTSMVRGYVQEGNV 129
            +  I    V++N ++SG   +G  ++A R+   M  R    +V ++ +++   V+EG V
Sbjct: 213 EKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRV 272

Query: 130 EEAERLFWRMPEK----NVVSWTVMLGGLLKDSRVEDARKLFDMMPVK----DVVAVTNM 181
            EAE  +  M  +    ++V++++++ GL   SR+++A ++F  M  K    DVV  + +
Sbjct: 273 SEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSIL 332

Query: 182 IGGYCEEGRLEEARALFDEMPK----RNVVTWTTMVSGYARNRRVDVARKLFEVM----P 233
           I GYC+  ++E    LF EM +    RN VT+T ++ GY R  +++VA ++F  M     
Sbjct: 333 INGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGV 392

Query: 234 ERNEVSWTAMLMGYTHSGRMREASEFFDAMPVK----PVVACNEMIMGFGFDGDVDRAKA 289
             N +++  +L G   +G++ +A      M        +V  N +I G    G+V  A  
Sbjct: 393 HPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWD 452

Query: 290 VFEKMRER----DDGTWSAMIKVYERKGFELEALGLFARMQREGAALN 333
           ++  +  +    D  T++ M+    +KG   EA  LF +M+ +G   N
Sbjct: 453 IYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMKEDGILPN 500



 Score = 98.2 bits (243), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 97/457 (21%), Positives = 191/457 (41%), Gaps = 68/457 (14%)

Query: 18  QCTSTGAISRYARIGQIENARKVFDETPH---------IHRTTSSWNAMVAAYFQAHQPH 68
           QC    +I+ ++R+    +  K +D   +         I     + N ++  + +  Q  
Sbjct: 74  QCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLS 133

Query: 69  QAVT----LFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAM------PVRNVVSWTS 118
            A++    + +   E +IV++  +++GF +   V +A  +FD M      P  NVV + +
Sbjct: 134 LALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKP--NVVIYNT 191

Query: 119 MVRGYVQEGNVEEAERLFWRMPEK----NVVSWTVMLGGLLKDSRVEDARKLFDMMPVK- 173
           ++ G  +   V+ A  L  RM +     +VV++  ++ GL    R  DA ++   M  + 
Sbjct: 192 IIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKRE 251

Query: 174 ---DVVAVTNMIGGYCEEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRRVDVAR 226
              DV     +I    +EGR+ EA   ++EM +R    ++VT++ ++ G     R+D A 
Sbjct: 252 IYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAE 311

Query: 227 KLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDG 282
           ++F  M  +    + V+++ ++ GY  S ++    + F  M  + VV             
Sbjct: 312 EMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVV------------- 358

Query: 283 DVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXX 342
                         R+  T++ +I+ Y R G    A  +F RM   G   N         
Sbjct: 359 --------------RNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLH 404

Query: 343 XXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLK---- 398
                   +    + A + ++  D D+   + +I    K G++  A  I+     +    
Sbjct: 405 GLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMP 464

Query: 399 DVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDD 435
           D+  + +M+ G  + GL  EA  +FR M   G+ P++
Sbjct: 465 DIWTYTTMMLGLYKKGLRREADALFRKMKEDGILPNE 501



 Score = 88.2 bits (217), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 171/382 (44%), Gaps = 31/382 (8%)

Query: 143 NVVSWTVMLGGLLKDSRVEDAR----KLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALF 198
           N+ +  ++L    + S++  A     K+  +     +V   +++ G+C   R+ +A  +F
Sbjct: 115 NLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMF 174

Query: 199 DEMP----KRNVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHS 250
           D+M     K NVV + T++ G  ++++VD A  L   M +     + V++ +++ G   S
Sbjct: 175 DQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSS 234

Query: 251 GRMREASEFFDAMP---VKP-VVACNEMIMGFGFDGDVDRAKAVFEKMRER----DDGTW 302
           GR  +A+     M    + P V   N +I     +G V  A+  +E+M  R    D  T+
Sbjct: 235 GRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTY 294

Query: 303 SAMIK---VYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHAR 359
           S +I    +Y R     EA  +F  M  +G   +                 +HG ++   
Sbjct: 295 SLLIYGLCMYSRLD---EAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCE 351

Query: 360 LVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPL----KDVVMWNSMITGYSQHGL 415
           + +    ++    + LI  Y + G L  A+ IF R        +++ +N ++ G   +G 
Sbjct: 352 MSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGK 411

Query: 416 GEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYA 475
            E+AL +  DM  +G+  D +++  ++     +G+V +  +I+ S+ C+  + P I  Y 
Sbjct: 412 IEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQ-GLMPDIWTYT 470

Query: 476 CMVDLLGRAGQVNDAVEIVEKM 497
            M+  L + G   +A  +  KM
Sbjct: 471 TMMLGLYKKGLRREADALFRKM 492



 Score = 81.6 bits (200), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 94/426 (22%), Positives = 176/426 (41%), Gaps = 64/426 (15%)

Query: 81  NIVSWNGMVSGFVKNGMVAEARRVFDAMPVR----NVVSWTSMVRGYVQEGNVEEAERLF 136
           N+ + N +++ F +   ++ A      M       ++V++ S++ G+ +   V +A  +F
Sbjct: 115 NLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMF 174

Query: 137 WRMP----EKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVK----DVVAVTNMIGGYCEE 188
            +M     + NVV +  ++ GL K  +V++A  L + M       DVV   ++I G C  
Sbjct: 175 DQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSS 234

Query: 189 GRLEEARALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSW 240
           GR  +A  +   M KR    +V T+  ++    +  RV  A + +E M  R    + V++
Sbjct: 235 GRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTY 294

Query: 241 TAMLMGYTHSGRMREASEFFDAMPVK----PVVACNEMIMGFGFDGDVDRAKAVFEKMRE 296
           + ++ G     R+ EA E F  M  K     VV  + +I G+     V+    +F +M +
Sbjct: 295 SLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQ 354

Query: 297 R----DDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDH 352
           R    +  T++ +I+ Y R G    A  +F RM   G   N                 D+
Sbjct: 355 RGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNI-----ITYNVLLHGLCDN 409

Query: 353 GRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVMWNSMITGYSQ 412
           G+   A ++ ++  ++   A                          D+V +N +I G  +
Sbjct: 410 GKIEKALVILADMQKNGMDA--------------------------DIVTYNIIIRGMCK 443

Query: 413 HGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIE 472
            G   +A +++  +   G+ PD  ++  ++      G  +E   +F  MK     E GI 
Sbjct: 444 AGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMK-----EDGIL 498

Query: 473 HYACMV 478
              C V
Sbjct: 499 PNECYV 504



 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 74/163 (45%), Gaps = 5/163 (3%)

Query: 399 DVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIF 458
           DVV +NS+I+G    G   +A  +   M    + PD  +F  ++ AC   G+V E  E +
Sbjct: 220 DVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFY 279

Query: 459 ESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPME---PDAIVWGSLL-GACR 514
           E M  +  ++P I  Y+ ++  L    ++++A E+   M  +   PD + +  L+ G C+
Sbjct: 280 EEMI-RRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCK 338

Query: 515 THMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVE 557
           +       ++  E   +   +N   Y +L   Y   G+    E
Sbjct: 339 SKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAE 381


>AT1G64100.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:23791585-23793641 FORWARD LENGTH=666
          Length = 666

 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 157/331 (47%), Gaps = 30/331 (9%)

Query: 29  ARIGQIENARKVFD--ETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEK----NI 82
            ++G  ++A  +    E  HI      ++A++    +      A  LF    EK    N+
Sbjct: 272 CKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNV 331

Query: 83  VSWNGMVSGFVKNGMVAEARRVFDAMPVR----NVVSWTSMVRGYVQEGNVEEAERLFWR 138
            ++N M+ GF   G  ++A+R+   M  R    +V+++ +++   V+EG + EAE+L   
Sbjct: 332 FTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDE 391

Query: 139 MPEK----NVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEA 194
           M  +    + V++  M+ G  K +R +DA+ +FD+M   DVV    +I  YC   R++E 
Sbjct: 392 MLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEG 451

Query: 195 RALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMG 246
             L  E+ +R    N  T+ T++ G+     ++ A+ LF+ M       + ++   +L G
Sbjct: 452 MQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYG 511

Query: 247 YTHSGRMREASEFFDAMPVKPV----VACNEMIMGFGFDGDVDRAKAVFEKMR----ERD 298
           +  + ++ EA E F+ + +  +    VA N +I G      VD A  +F  +     E D
Sbjct: 512 FCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPD 571

Query: 299 DGTWSAMIKVYERKGFELEALGLFARMQREG 329
             T++ MI  +  K    +A  LF +M+  G
Sbjct: 572 VQTYNVMISGFCGKSAISDANVLFHKMKDNG 602



 Score =  114 bits (284), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 109/494 (22%), Positives = 210/494 (42%), Gaps = 52/494 (10%)

Query: 53  SWNAMVAAYFQAHQPHQAVTLFETTP----EKNIVSWNGMVSGFVKNGMVAEARRVFDAM 108
           S+N ++  +   H+   +++ F        + ++V++N ++ G      ++EA  +F  M
Sbjct: 143 SFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYM 202

Query: 109 ---------------------PVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEK----N 143
                                PV  V+++ +++ G   EG V EA  L  +M  K    +
Sbjct: 203 VETGFLEAVALFDQMVEIGLTPV--VITFNTLINGLCLEGRVLEAAALVNKMVGKGLHID 260

Query: 144 VVSWTVMLGGLLKDSRVEDARKLFDMMP---VK-DVVAVTNMIGGYCEEGRLEEARALFD 199
           VV++  ++ G+ K    + A  L   M    +K DVV  + +I   C++G   +A+ LF 
Sbjct: 261 VVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFS 320

Query: 200 EMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSG 251
           EM ++    NV T+  M+ G+    R   A++L   M ER    + +++ A++      G
Sbjct: 321 EMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEG 380

Query: 252 RMREASEFFDAMPVKPV----VACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIK 307
           ++ EA +  D M  + +    V  N MI GF      D AK +F+ M   D  T++ +I 
Sbjct: 381 KLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIID 440

Query: 308 VYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQ 367
           VY R     E + L   + R G   N                 +  + +   ++      
Sbjct: 441 VYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCP 500

Query: 368 DLYVASALITMYVKCGDLVRAKWIFNRYPLK----DVVMWNSMITGYSQHGLGEEALNVF 423
           D    + L+  + +   L  A  +F    +     D V +N +I G  +    +EA ++F
Sbjct: 501 DTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLF 560

Query: 424 RDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGR 483
             + + GV PD  ++  ++S       + +   +F  MK     EP    Y  ++    +
Sbjct: 561 CSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGH-EPDNSTYNTLIRGCLK 619

Query: 484 AGQVNDAVEIVEKM 497
           AG+++ ++E++ +M
Sbjct: 620 AGEIDKSIELISEM 633



 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 99/427 (23%), Positives = 185/427 (43%), Gaps = 34/427 (7%)

Query: 69  QAVTLFETTPEKN----IVSWNGMVSGFVKNGMVAEARRVFDAMPVR----NVVSWTSMV 120
           +AV LF+   E      ++++N +++G    G V EA  + + M  +    +VV++ ++V
Sbjct: 209 EAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIV 268

Query: 121 RGYVQEGNVEEAERLFWRMPEK----NVVSWTVMLGGLLKDSRVEDARKLFDMMPVK--- 173
            G  + G+ + A  L  +M E     +VV ++ ++  L KD    DA+ LF  M  K   
Sbjct: 269 NGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIA 328

Query: 174 -DVVAVTNMIGGYCEEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKL 228
            +V     MI G+C  GR  +A+ L  +M +R    +V+T+  ++S   +  ++  A KL
Sbjct: 329 PNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKL 388

Query: 229 FEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDV 284
            + M  R    + V++ +M+ G+    R  +A   FD M    VV  N +I  +     V
Sbjct: 389 CDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRV 448

Query: 285 DRAKAVFEKMRER----DDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXX 340
           D    +  ++  R    +  T++ +I  +        A  LF  M   G   +       
Sbjct: 449 DEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNIL 508

Query: 341 XXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKW-IFNRYPLK- 398
                     +   ++   +  S+ D D    + +I    K G  V   W +F   P+  
Sbjct: 509 LYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCK-GSKVDEAWDLFCSLPIHG 567

Query: 399 ---DVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGR 455
              DV  +N MI+G+       +A  +F  M  +G  PD+ ++  ++  C  +G++ +  
Sbjct: 568 VEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSI 627

Query: 456 EIFESMK 462
           E+   M+
Sbjct: 628 ELISEMR 634



 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 89/398 (22%), Positives = 162/398 (40%), Gaps = 78/398 (19%)

Query: 140 PEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVK----DVVAVTNMIGGYCEEGRLEEAR 195
           P    V    ++G  ++ +R + A  L+  M ++    ++ +   +I  +C+  +L  + 
Sbjct: 102 PFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSL 161

Query: 196 ALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSG 251
           + F ++ K     +VVT+ T++ G     R+  A  LF  M E      T  L       
Sbjct: 162 STFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVE------TGFL------- 208

Query: 252 RMREASEFFDAM---PVKPVVAC-NEMIMGFGFDGDVDRAKAVFEKMRER----DDGTWS 303
              EA   FD M    + PVV   N +I G   +G V  A A+  KM  +    D  T+ 
Sbjct: 209 ---EAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYG 265

Query: 304 AMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRS 363
            ++    + G    AL L ++M+                            + H +    
Sbjct: 266 TIVNGMCKMGDTKSALNLLSKME----------------------------ETHIK---- 293

Query: 364 EFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLK----DVVMWNSMITGYSQHGLGEEA 419
               D+ + SA+I    K G    A+++F+    K    +V  +N MI G+   G   +A
Sbjct: 294 ---PDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDA 350

Query: 420 LNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESM--KCKYQVEPGIEHYACM 477
             + RDM    + PD ++F  ++SA    GK+ E  ++ + M  +C +   P    Y  M
Sbjct: 351 QRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIF---PDTVTYNSM 407

Query: 478 VDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGA-CR 514
           +    +  + +DA  + + M   PD + + +++   CR
Sbjct: 408 IYGFCKHNRFDDAKHMFDLMA-SPDVVTFNTIIDVYCR 444


>AT1G62720.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:23227574-23229031 FORWARD
           LENGTH=485
          Length = 485

 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 156/304 (51%), Gaps = 29/304 (9%)

Query: 55  NAMVAAYFQAHQPHQAVTLFETTPE----KNIVSWNGMVSGFVKNGMVAEARRVFDAMP- 109
           ++++  + Q ++   A+ L     E     ++V +N ++ G  K G+V +A  +FD M  
Sbjct: 143 SSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMER 202

Query: 110 --VR-NVVSWTSMVRGYVQEGNVEEAERLFWRMPEK----NVVSWTVMLGGLLKDSRVED 162
             VR + V++ S+V G    G   +A RL   M  +    NV+++T ++   +K+ +  +
Sbjct: 203 DGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSE 262

Query: 163 ARKLFDMMPVK----DVVAVTNMIGGYCEEGRLEEARALFDEMPKR----NVVTWTTMVS 214
           A KL++ M  +    DV    ++I G C  GR++EA+ + D M  +    +VVT+ T+++
Sbjct: 263 AMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLIN 322

Query: 215 GYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVA 270
           G+ +++RVD   KLF  M +R    + +++  ++ GY  +GR   A E F  M  +P + 
Sbjct: 323 GFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSRPNIR 382

Query: 271 CNEMIM-GFGFDGDVDRAKAVFEKMR----ERDDGTWSAMIKVYERKGFELEALGLFARM 325
              +++ G   +  V++A  +FE M+    E D  T++ +I    + G   +A  LF  +
Sbjct: 383 TYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSL 442

Query: 326 QREG 329
             +G
Sbjct: 443 SCKG 446



 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 156/305 (51%), Gaps = 29/305 (9%)

Query: 54  WNAMVAAYFQAHQPHQAVTLFETTPEKNI----VSWNGMVSGFVKNGMVAEARRVFDAMP 109
           +N ++    +    + AV LF+      +    V++N +V+G   +G  ++A R+   M 
Sbjct: 177 YNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMV 236

Query: 110 VR----NVVSWTSMVRGYVQEGNVEEAERLFWRMPEK----NVVSWTVMLGGLLKDSRVE 161
           +R    NV+++T+++  +V+EG   EA +L+  M  +    +V ++  ++ GL    RV+
Sbjct: 237 MRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVD 296

Query: 162 DARKLFDMMPVK----DVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVV----TWTTMV 213
           +A+++ D+M  K    DVV    +I G+C+  R++E   LF EM +R +V    T+ T++
Sbjct: 297 EAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTII 356

Query: 214 SGYARNRRVDVARKLFEVMPERNEV-SWTAMLMGYTHSGRMREASEFFDAMPVK----PV 268
            GY +  R D A+++F  M  R  + +++ +L G   + R+ +A   F+ M        +
Sbjct: 357 QGYFQAGRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDI 416

Query: 269 VACNEMIMGFGFDGDVDRAKAVFEKMRER----DDGTWSAMIKVYERKGFELEALGLFAR 324
              N +I G    G+V+ A  +F  +  +    D  +++ MI  + RK    ++  L+ +
Sbjct: 417 TTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRK 476

Query: 325 MQREG 329
           MQ +G
Sbjct: 477 MQEDG 481



 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 106/480 (22%), Positives = 197/480 (41%), Gaps = 79/480 (16%)

Query: 128 NVEEAERLFWRM----PEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPV----KDVVAVT 179
           N+EE   LF +M    P  ++V ++ +L  + K    +    LF  M V     D+ +  
Sbjct: 49  NLEEEIDLFCKMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYN 108

Query: 180 NMIGGYCEEGRLEEARALFDEMPK----RNVVTWTTMVSGYARNRRV----DVARKLFEV 231
            +I   C   R   A ++  +M K     +VVT +++++G+ +  RV    D+  K+ E+
Sbjct: 109 IVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEM 168

Query: 232 MPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPV----VACNEMIMGFGFDGDVDRA 287
               + V +  ++ G    G + +A E FD M    V    V  N ++ G    G    A
Sbjct: 169 GFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDA 228

Query: 288 KAVFEKMRERDDG----TWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXX 343
             +   M  RD      T++A+I V+ ++G   EA+ L+  M R                
Sbjct: 229 ARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCV------------- 275

Query: 344 XXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFN----RYPLKD 399
                                 D D++  ++LI      G +  AK + +    +  L D
Sbjct: 276 ----------------------DPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPD 313

Query: 400 VVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFE 459
           VV +N++I G+ +    +E   +FR+M   G+  D I++  ++     +G+    +EIF 
Sbjct: 314 VVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFS 373

Query: 460 SMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMP---MEPDAIVWGSLL-GACRT 515
            M  +    P I  Y+ ++  L    +V  A+ + E M    +E D   +  ++ G C  
Sbjct: 374 RMDSR----PNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMC-- 427

Query: 516 HMKLDLAEVAVEKLAQLEPKNAGP----YVLLSHMYASKGRWEDVEVVREKIKTRSVIKL 571
             K+   E A +    L  K   P    Y  +   +  K +W+  +++  K++   ++ L
Sbjct: 428 --KIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLLPL 485



 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/261 (22%), Positives = 122/261 (46%), Gaps = 44/261 (16%)

Query: 53  SWNAMVAAYFQAHQPHQAVTLFETTPEK----NIVSWNGMVSGFVKNGMVAEARRVFDAM 108
           ++ A++  + +  +  +A+ L+E    +    ++ ++N +++G   +G V EA+++ D M
Sbjct: 246 TFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLM 305

Query: 109 PVR----NVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVSWTVMLGGLLKDSRVEDAR 164
             +    +VV++ +++ G+ +   V+E  +LF  M ++ +V                   
Sbjct: 306 VTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVG------------------ 347

Query: 165 KLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKR-NVVTWTTMVSGYARNRRVD 223
                    D +    +I GY + GR + A+ +F  M  R N+ T++ ++ G   N RV+
Sbjct: 348 ---------DTITYNTIIQGYFQAGRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVE 398

Query: 224 VARKLFEVMP----ERNEVSWTAMLMGYTHSGRMREASEFFDAMPVK----PVVACNEMI 275
            A  LFE M     E +  ++  ++ G    G + +A + F ++  K     VV+   MI
Sbjct: 399 KALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMI 458

Query: 276 MGFGFDGDVDRAKAVFEKMRE 296
            GF      D++  ++ KM+E
Sbjct: 459 SGFCRKRQWDKSDLLYRKMQE 479


>AT1G64100.2 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:23791585-23795563 FORWARD LENGTH=806
          Length = 806

 Score =  114 bits (284), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 108/494 (21%), Positives = 208/494 (42%), Gaps = 52/494 (10%)

Query: 53  SWNAMVAAYFQAHQPHQAVTLFETTP----EKNIVSWNGMVSGFVKNGMVAEARRVFDAM 108
           S+N ++  +   H+   +++ F        + ++V++N ++ G      ++EA  +F  M
Sbjct: 143 SFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYM 202

Query: 109 ---------------------PVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEK----N 143
                                PV  V+++ +++ G   EG V EA  L  +M  K    +
Sbjct: 203 VETGFLEAVALFDQMVEIGLTPV--VITFNTLINGLCLEGRVLEAAALVNKMVGKGLHID 260

Query: 144 VVSWTVMLGGLLKDSRVEDARKLFDMMPVK----DVVAVTNMIGGYCEEGRLEEARALFD 199
           VV++  ++ G+ K    + A  L   M       DVV  + +I   C++G   +A+ LF 
Sbjct: 261 VVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFS 320

Query: 200 EMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSG 251
           EM ++    NV T+  M+ G+    R   A++L   M ER    + +++ A++      G
Sbjct: 321 EMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEG 380

Query: 252 RMREASEFFDAMPVKPV----VACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIK 307
           ++ EA +  D M  + +    V  N MI GF      D AK +F+ M   D  T++ +I 
Sbjct: 381 KLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIID 440

Query: 308 VYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQ 367
           VY R     E + L   + R G   N                 +  + +   ++      
Sbjct: 441 VYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCP 500

Query: 368 DLYVASALITMYVKCGDLVRAKWIFNRYPLK----DVVMWNSMITGYSQHGLGEEALNVF 423
           D    + L+  + +   L  A  +F    +     D V +N +I G  +    +EA ++F
Sbjct: 501 DTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLF 560

Query: 424 RDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGR 483
             + + GV PD  ++  ++S       + +   +F  MK     EP    Y  ++    +
Sbjct: 561 CSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGH-EPDNSTYNTLIRGCLK 619

Query: 484 AGQVNDAVEIVEKM 497
           AG+++ ++E++ +M
Sbjct: 620 AGEIDKSIELISEM 633



 Score =  113 bits (283), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 157/331 (47%), Gaps = 30/331 (9%)

Query: 29  ARIGQIENARKVFD--ETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEK----NI 82
            ++G  ++A  +    E  HI      ++A++    +      A  LF    EK    N+
Sbjct: 272 CKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNV 331

Query: 83  VSWNGMVSGFVKNGMVAEARRVFDAMPVR----NVVSWTSMVRGYVQEGNVEEAERLFWR 138
            ++N M+ GF   G  ++A+R+   M  R    +V+++ +++   V+EG + EAE+L   
Sbjct: 332 FTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDE 391

Query: 139 MPEK----NVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEA 194
           M  +    + V++  M+ G  K +R +DA+ +FD+M   DVV    +I  YC   R++E 
Sbjct: 392 MLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEG 451

Query: 195 RALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMG 246
             L  E+ +R    N  T+ T++ G+     ++ A+ LF+ M       + ++   +L G
Sbjct: 452 MQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYG 511

Query: 247 YTHSGRMREASEFFDAMPVKPV----VACNEMIMGFGFDGDVDRAKAVFEKMR----ERD 298
           +  + ++ EA E F+ + +  +    VA N +I G      VD A  +F  +     E D
Sbjct: 512 FCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPD 571

Query: 299 DGTWSAMIKVYERKGFELEALGLFARMQREG 329
             T++ MI  +  K    +A  LF +M+  G
Sbjct: 572 VQTYNVMISGFCGKSAISDANVLFHKMKDNG 602



 Score =  105 bits (261), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 99/427 (23%), Positives = 185/427 (43%), Gaps = 34/427 (7%)

Query: 69  QAVTLFETTPEKN----IVSWNGMVSGFVKNGMVAEARRVFDAMPVR----NVVSWTSMV 120
           +AV LF+   E      ++++N +++G    G V EA  + + M  +    +VV++ ++V
Sbjct: 209 EAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIV 268

Query: 121 RGYVQEGNVEEAERLFWRMPEK----NVVSWTVMLGGLLKDSRVEDARKLFDMMPVK--- 173
            G  + G+ + A  L  +M E     +VV ++ ++  L KD    DA+ LF  M  K   
Sbjct: 269 NGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIA 328

Query: 174 -DVVAVTNMIGGYCEEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKL 228
            +V     MI G+C  GR  +A+ L  +M +R    +V+T+  ++S   +  ++  A KL
Sbjct: 329 PNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKL 388

Query: 229 FEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDV 284
            + M  R    + V++ +M+ G+    R  +A   FD M    VV  N +I  +     V
Sbjct: 389 CDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRV 448

Query: 285 DRAKAVFEKMRER----DDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXX 340
           D    +  ++  R    +  T++ +I  +        A  LF  M   G   +       
Sbjct: 449 DEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNIL 508

Query: 341 XXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKW-IFNRYPLK- 398
                     +   ++   +  S+ D D    + +I    K G  V   W +F   P+  
Sbjct: 509 LYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCK-GSKVDEAWDLFCSLPIHG 567

Query: 399 ---DVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGR 455
              DV  +N MI+G+       +A  +F  M  +G  PD+ ++  ++  C  +G++ +  
Sbjct: 568 VEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSI 627

Query: 456 EIFESMK 462
           E+   M+
Sbjct: 628 ELISEMR 634



 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 89/398 (22%), Positives = 162/398 (40%), Gaps = 78/398 (19%)

Query: 140 PEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVK----DVVAVTNMIGGYCEEGRLEEAR 195
           P    V    ++G  ++ +R + A  L+  M ++    ++ +   +I  +C+  +L  + 
Sbjct: 102 PFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSL 161

Query: 196 ALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSG 251
           + F ++ K     +VVT+ T++ G     R+  A  LF  M E      T  L       
Sbjct: 162 STFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVE------TGFL------- 208

Query: 252 RMREASEFFDAM---PVKPVVAC-NEMIMGFGFDGDVDRAKAVFEKMRER----DDGTWS 303
              EA   FD M    + PVV   N +I G   +G V  A A+  KM  +    D  T+ 
Sbjct: 209 ---EAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYG 265

Query: 304 AMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRS 363
            ++    + G    AL L ++M+                            + H +    
Sbjct: 266 TIVNGMCKMGDTKSALNLLSKME----------------------------ETHIK---- 293

Query: 364 EFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLK----DVVMWNSMITGYSQHGLGEEA 419
               D+ + SA+I    K G    A+++F+    K    +V  +N MI G+   G   +A
Sbjct: 294 ---PDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDA 350

Query: 420 LNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESM--KCKYQVEPGIEHYACM 477
             + RDM    + PD ++F  ++SA    GK+ E  ++ + M  +C +   P    Y  M
Sbjct: 351 QRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIF---PDTVTYNSM 407

Query: 478 VDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLLGA-CR 514
           +    +  + +DA  + + M   PD + + +++   CR
Sbjct: 408 IYGFCKHNRFDDAKHMFDLMA-SPDVVTFNTIIDVYCR 444


>AT5G61990.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:24900186-24903110 REVERSE
           LENGTH=974
          Length = 974

 Score =  114 bits (284), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 116/523 (22%), Positives = 230/523 (43%), Gaps = 84/523 (16%)

Query: 22  TGAISRYARIGQIENARKVFDETPH--IHRTTSSWNAMVAAYFQAHQPHQA----VTLFE 75
           T  I  + +  +  +A +V  E     I      +N+++    +A +  +A    V + E
Sbjct: 456 TTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVE 515

Query: 76  TTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAM----PVRNVVSWTSMVRGYVQEGNVEE 131
              + N  ++   +SG+++    A A +    M     + N V  T ++  Y ++G V E
Sbjct: 516 NGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIE 575

Query: 132 AERLFWRMPEKNVV----SWTVMLGGLLKDSRVEDARKLFDMMPVK----DVVAVTNMIG 183
           A   +  M ++ ++    ++TV++ GL K+ +V+DA ++F  M  K    DV +   +I 
Sbjct: 576 ACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLIN 635

Query: 184 GYCEEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMPER---- 235
           G+ + G +++A ++FDEM +     NV+ +  ++ G+ R+  ++ A++L + M  +    
Sbjct: 636 GFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHP 695

Query: 236 NEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDG-----DVDRAKAV 290
           N V++  ++ GY  SG + EA   FD M +K +V  +  +     DG     DV+RA  +
Sbjct: 696 NAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVP-DSFVYTTLVDGCCRLNDVERAITI 754

Query: 291 F---EKMRERDDGTWSAMIK-VYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXX 346
           F   +K        ++A+I  V++           F + + +   LN             
Sbjct: 755 FGTNKKGCASSTAPFNALINWVFK-----------FGKTELKTEVLN------------- 790

Query: 347 XXXXDHGRQVHARLVRSEFDQ----DLYVASALITMYVKCGDLVRAKWIF----NRYPLK 398
                       RL+   FD+    +    + +I    K G+L  AK +F    N   + 
Sbjct: 791 ------------RLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMP 838

Query: 399 DVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIF 458
            V+ + S++ GY + G   E   VF +   +G+ PD I +  +++A    G   +   + 
Sbjct: 839 TVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLV 898

Query: 459 ESMKCKYQVEPG----IEHYACMVDLLGRAGQVNDAVEIVEKM 497
           + M  K  V+ G    I     ++    + G++  A +++E M
Sbjct: 899 DQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENM 941



 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 116/537 (21%), Positives = 225/537 (41%), Gaps = 63/537 (11%)

Query: 25  ISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIV- 83
           I  + R G ++  + V  +T    RT +                 A+ L E+   K +V 
Sbjct: 228 IIAHCRAGNVQLGKDVLFKTEKEFRTAT------------LNVDGALKLKESMICKGLVP 275

Query: 84  ---SWNGMVSGFVKNGMVAEARRVFDAMPVRNVV----SWTSMVRGYVQEGNVEEAERLF 136
              +++ ++ G  K   + +A+ +   M    V     +++ ++ G ++  N + A+ L 
Sbjct: 276 LKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLV 335

Query: 137 WRMPEKNV----VSWTVMLGGLLKDSRVEDARKLFDMMPVKDVV----AVTNMIGGYCEE 188
             M    +      +   +  + K+  +E A+ LFD M    ++    A  ++I GYC E
Sbjct: 336 HEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCRE 395

Query: 189 GRLEEARALFDEMPKRNVV----TWTTMVSGYARNRRVDVARKLFEVMPER----NEVSW 240
             + +   L  EM KRN+V    T+ T+V G   +  +D A  + + M       N V +
Sbjct: 396 KNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIY 455

Query: 241 TAMLMGYTHSGRMREASEFFDAMP---VKPVVAC-NEMIMGFGFDGDVDRAKAVFEKMRE 296
           T ++  +  + R  +A      M    + P + C N +I+G      +D A++   +M E
Sbjct: 456 TTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVE 515

Query: 297 R----DDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDH 352
                +  T+ A I  Y     E  +   + +  RE   L                    
Sbjct: 516 NGLKPNAFTYGAFISGYIEAS-EFASADKYVKEMRECGVL----PNKVLCTGLINEYCKK 570

Query: 353 GRQVHA-RLVRSEFDQ----DLYVASALITMYVKCGDLVRAKWIFNRYPLK----DVVMW 403
           G+ + A    RS  DQ    D    + L+    K   +  A+ IF     K    DV  +
Sbjct: 571 GKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSY 630

Query: 404 NSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKC 463
             +I G+S+ G  ++A ++F +M   G+ P+ I +  +L     SG++++ +E+ + M  
Sbjct: 631 GVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSV 690

Query: 464 KYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPME---PDAIVWGSLL-GACRTH 516
           K  + P    Y  ++D   ++G + +A  + ++M ++   PD+ V+ +L+ G CR +
Sbjct: 691 K-GLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLN 746


>AT1G06710.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:2056999-2060242 REVERSE
           LENGTH=997
          Length = 997

 Score =  113 bits (282), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 118/472 (25%), Positives = 202/472 (42%), Gaps = 55/472 (11%)

Query: 20  TSTGAISRYARIGQIENARKVFDETPHIHRTTS--SWNAMVAAYFQAHQPHQAVTLFETT 77
           T T  +  + + G IE ARK F+E   +  T +  ++ A++ AY +A +   A  LFET 
Sbjct: 520 TYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETM 579

Query: 78  PEK----NIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAE 133
             +    NIV+++ ++ G  K G V +A ++F+ M     V    M   Y ++ + + +E
Sbjct: 580 LSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDM---YFKQYD-DNSE 635

Query: 134 RLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLFDMMPVK----DVVAVTNMIGGYCEEG 189
           R        NVV++  +L G  K  RVE+ARKL D M ++    + +    +I G C+ G
Sbjct: 636 R-------PNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVG 688

Query: 190 RLEEARALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWT 241
           +L+EA+ +  EM +      + T+++++  Y + +R D+A K+   M E     N V +T
Sbjct: 689 KLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYT 748

Query: 242 AMLMGYTHSGRMREASEFFDAMPVK----PVVACNEMIMGFGFDGDVDRAKAVFEKMRER 297
            M+ G    G+  EA +    M  K     VV    MI GFG  G ++    + E+M  +
Sbjct: 749 EMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSK 808

Query: 298 DDG----TWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHG 353
                  T+  +I    + G    AL +   +  E    ++P               +  
Sbjct: 809 GVAPNYVTYRVLIDHCCKNG----ALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEF- 863

Query: 354 RQVHARLVRSEFDQD-----LYVASALITMYVKCGDLVRAKWIFNRYPLKDVVM------ 402
             + +  +  E  QD     L V   LI   +K   L  A  +          +      
Sbjct: 864 --IESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSST 921

Query: 403 WNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEG 454
           +NS+I         E A  +F +M   GV P+  SF  ++     + K+ E 
Sbjct: 922 YNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEA 973



 Score =  108 bits (269), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 104/409 (25%), Positives = 183/409 (44%), Gaps = 34/409 (8%)

Query: 110 VRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVV----SWTVMLGGLLKDSRVEDARK 165
           V N ++ +S  R     G  E+A  +   M  +  +    +++ +L  L   S++E A  
Sbjct: 445 VLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFL 504

Query: 166 LFDMMP----VKDVVAVTNMIGGYCEEGRLEEARALFDEMPK----RNVVTWTTMVSGYA 217
           LF+ M     V DV   T M+  +C+ G +E+AR  F+EM +     NVVT+T ++  Y 
Sbjct: 505 LFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYL 564

Query: 218 RNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNE 273
           + ++V  A +LFE M       N V+++A++ G+  +G++ +A + F+ M     V   +
Sbjct: 565 KAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVD 624

Query: 274 MIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALN 333
           M     +D + +R   V          T+ A++  + +     EA  L   M  EG   N
Sbjct: 625 MYFK-QYDDNSERPNVV----------TYGALLDGFCKSHRVEEARKLLDAMSMEGCEPN 673

Query: 334 FPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMY--VKCGDL---VRA 388
                            D  ++V   +    F   LY  S+LI  Y  VK  DL   V +
Sbjct: 674 QIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLS 733

Query: 389 KWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYS 448
           K + N     +VV++  MI G  + G  +EA  + + M   G  P+ +++  ++      
Sbjct: 734 KMLENSCA-PNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMI 792

Query: 449 GKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKM 497
           GK++   E+ E M  K  V P    Y  ++D   + G ++ A  ++E+M
Sbjct: 793 GKIETCLELLERMGSK-GVAPNYVTYRVLIDHCCKNGALDVAHNLLEEM 840



 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 98/550 (17%), Positives = 214/550 (38%), Gaps = 64/550 (11%)

Query: 52  SSWNAMVAAYFQAHQPHQAVTLFETTPEKNI----VSWNGMVSGFVKNGMVAEARRVFDA 107
           S++N ++ A+ +A +   A  +       N+     +         K G   EA  + + 
Sbjct: 236 STYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREALTLVET 295

Query: 108 MP-VRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEK----NVVSWTVMLGGLLKDSRVED 162
              V + V +T ++ G  +    EEA     RM       NVV+++ +L G L   ++  
Sbjct: 296 ENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGR 355

Query: 163 ARKLFDMMPVKDVVA----VTNMIGGYCEEGRLEEARALFDEMPK----RNVVTWTTMVS 214
            +++ +MM ++          +++  YC  G    A  L  +M K       V +  ++ 
Sbjct: 356 CKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIG 415

Query: 215 GYARNRR------VDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAMP 264
               ++       +D+A K +  M       N+++ ++       +G+  +A      M 
Sbjct: 416 SICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMI 475

Query: 265 VK---PVVACNEMIMGFGFDGD-VDRAKAVFEKMRE----RDDGTWSAMIKVYERKGFEL 316
            +   P  +    ++ +  +   ++ A  +FE+M+      D  T++ M+  + + G   
Sbjct: 476 GQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIE 535

Query: 317 EALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALI 376
           +A   F  M+  G   N                  +  ++   ++      ++   SALI
Sbjct: 536 QARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALI 595

Query: 377 TMYVKCGDLVRAKWIFNR------YPLKD--------------VVMWNSMITGYSQHGLG 416
             + K G + +A  IF R       P  D              VV + +++ G+ +    
Sbjct: 596 DGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRV 655

Query: 417 EEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYAC 476
           EEA  +   M + G  P+ I +  ++      GK+ E +E+   M  ++     +  Y+ 
Sbjct: 656 EEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMS-EHGFPATLYTYSS 714

Query: 477 MVDLLGRAGQVNDAVEIVEKM---PMEPDAIVWGSLL-GACRTHMKLDLAEVAVEKLAQL 532
           ++D   +  + + A +++ KM      P+ +++  ++ G C    K+   + A + +  +
Sbjct: 715 LIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLC----KVGKTDEAYKLMQMM 770

Query: 533 EPKNAGPYVL 542
           E K   P V+
Sbjct: 771 EEKGCQPNVV 780


>AT1G63150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:23419399-23421288 FORWARD
           LENGTH=629
          Length = 629

 Score =  113 bits (282), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 106/460 (23%), Positives = 204/460 (44%), Gaps = 70/460 (15%)

Query: 20  TSTGAISRYARIGQIENARKVFDETPHI--HRTTSSWNAMVAAYFQAHQPHQAVTLFETT 77
           T +  ++ Y    +I +A  + D+   +     T ++  ++   F  ++  +AV L +  
Sbjct: 155 TLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQM 214

Query: 78  PEK----NIVSWNGMVSGFVKNGMVAEARRVFDAMPVR----NVVSWTSMVRGYVQEGNV 129
            ++    ++V++  +V+G  K G +  A  + + M       NVV + +++    +  +V
Sbjct: 215 VQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHV 274

Query: 130 EEAERLFWRMPEK----NVVSWTVMLGGLLKDSRVEDARKLFDMMPVK----DVVAVTNM 181
           E A  LF  M  K    NVV++  ++  L    R  DA +L   M  K    +VV    +
Sbjct: 275 EVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNAL 334

Query: 182 IGGYCEEGRLEEARALFDEMPKRNV----VTWTTMVSGYARNRRVDVARKLFEVMPER-- 235
           I  + +EG+L EA  L +EM +R++    +T+  +++G+  + R+D A+++F+ M  +  
Sbjct: 335 IDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDC 394

Query: 236 --NEVSWTAMLMGYTHSGRMREASEFFDAMP----VKPVVACNEMIMGFGFDGDVDRAKA 289
             N  ++  ++ G+    R+ +  E F  M     V   V    +I GF   GD D A+ 
Sbjct: 395 LPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQM 454

Query: 290 VFEKMRER----DDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXX 345
           VF++M       D  T+S ++      G    AL +F  +Q+                  
Sbjct: 455 VFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQK------------------ 496

Query: 346 XXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLK-DVVMWN 404
                            SE + ++++ + +I    K G +  A  +F    +K DVV +N
Sbjct: 497 -----------------SEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSLSIKPDVVTYN 539

Query: 405 SMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSA 444
           +MI+G     L +EA ++FR M   G  P+  ++  ++ A
Sbjct: 540 TMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRA 579



 Score =  106 bits (265), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 156/336 (46%), Gaps = 31/336 (9%)

Query: 25  ISRYARIGQIENARKVFDE--TPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEK-- 80
           I    +   +E A  +F E  T  I     ++N+++       +   A  L     EK  
Sbjct: 265 IDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKI 324

Query: 81  --NIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNV----VSWTSMVRGYVQEGNVEEAER 134
             N+V++N ++  F K G + EA ++ + M  R++    +++  ++ G+     ++EA++
Sbjct: 325 NPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQ 384

Query: 135 LFWRMPEK----NVVSWTVMLGGLLKDSRVEDARKLFDMMP----VKDVVAVTNMIGGYC 186
           +F  M  K    N+ ++  ++ G  K  RVED  +LF  M     V + V  T +I G+ 
Sbjct: 385 MFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFF 444

Query: 187 EEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMP----ERNEV 238
           + G  + A+ +F +M       +++T++ ++ G     ++D A  +F+ +     E N  
Sbjct: 445 QAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIF 504

Query: 239 SWTAMLMGYTHSGRMREASEFFDAMPVKP-VVACNEMIMGFGFDGDVDRAKAVFEKMRER 297
            +  M+ G   +G++ EA + F ++ +KP VV  N MI G      +  A  +F KM+E 
Sbjct: 505 IYNTMIEGMCKAGKVGEAWDLFCSLSIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKED 564

Query: 298 ----DDGTWSAMIKVYERKGFELEALGLFARMQREG 329
               + GT++ +I+   R      +  L   M+  G
Sbjct: 565 GTLPNSGTYNTLIRANLRDCDRAASAELIKEMRSSG 600



 Score =  106 bits (264), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 114/534 (21%), Positives = 238/534 (44%), Gaps = 81/534 (15%)

Query: 26  SRYARIGQIENARKVFDETPHIHRTTS--SWNAMVAAYFQAHQPHQAVTLFETTP----E 79
           +R + I ++++A  +F +        S   +N +++A  + ++    ++L E        
Sbjct: 56  NRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGIS 115

Query: 80  KNIVSWNGMVSGFVKNGMVAEARRVFDAM------PVRNVVSWTSMVRGYVQEGNVEEAE 133
            ++ +++  ++ F +   ++ A  V   M      P  ++V+ +S++ GY     + +A 
Sbjct: 116 HDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEP--DIVTLSSLLNGYCHSKRISDAV 173

Query: 134 RLFWRMPE----KNVVSWTVMLGGLLKDSRVEDARKLFDMMPVK----DVVAVTNMIGGY 185
            L  +M E     +  ++T ++ GL   ++  +A  L D M  +    D+V    ++ G 
Sbjct: 174 ALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGL 233

Query: 186 CEEGRLEEARALFDEMP----KRNVVTWTTMVSGYARNRRVDVARKLFEVMPER----NE 237
           C+ G ++ A  L ++M     K NVV + T++    + R V+VA  LF  M  +    N 
Sbjct: 234 CKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNV 293

Query: 238 VSWTAMLMGYTHSGRMREASEFFDAM---PVKP-VVACNEMIMGFGFDGDVDRAKAVFEK 293
           V++ +++    + GR  +AS     M    + P VV  N +I  F  +G +  A+ + E+
Sbjct: 294 VTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEE 353

Query: 294 MRER----DDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXX 349
           M +R    D  T++ +I      GF +                                 
Sbjct: 354 MIQRSIDPDTITYNLLIN-----GFCMH------------------------------NR 378

Query: 350 XDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIF----NRYPLKDVVMWNS 405
            D  +Q+   +V  +   ++   + LI  + KC  +     +F     R  + + V + +
Sbjct: 379 LDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTT 438

Query: 406 MITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSA-CSYSGKVKEGREIFESMKCK 464
           +I G+ Q G  + A  VF+ M  + VP D +++  +L   CSY GK+     IF+ ++ K
Sbjct: 439 IIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSY-GKLDTALVIFKYLQ-K 496

Query: 465 YQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPMEPDAIVWGSLL-GACRTHM 517
            ++E  I  Y  M++ + +AG+V +A ++   + ++PD + + +++ G C   +
Sbjct: 497 SEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSLSIKPDVVTYNTMISGLCSKRL 550



 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/429 (18%), Positives = 178/429 (41%), Gaps = 29/429 (6%)

Query: 159 RVEDARKLF-DMM---PVKDVVAVTNMIGGYCEEGRLEEARALFDEMP----KRNVVTWT 210
           +V+DA  LF DM+   P   +V    ++    +  + E   +L ++M       ++ T++
Sbjct: 63  KVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYS 122

Query: 211 TMVSGYARNRRVDVA----RKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDA---M 263
             ++ + R  ++ +A     K+ ++  E + V+ +++L GY HS R+ +A    D    M
Sbjct: 123 IFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM 182

Query: 264 PVKP-VVACNEMIMGFGFDGDVDRAKAVFEKMRER----DDGTWSAMIKVYERKGFELEA 318
             KP       +I G         A A+ ++M +R    D  T+  ++    ++G    A
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLA 242

Query: 319 LGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITM 378
           L L  +M+      N                 +    +   +       ++   ++LI  
Sbjct: 243 LNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINC 302

Query: 379 YVKCGDLVRAKWIFNRYPLK----DVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPD 434
               G    A  + +    K    +VV +N++I  + + G   EA  +  +M    + PD
Sbjct: 303 LCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPD 362

Query: 435 DISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIV 494
            I++  +++      ++ E +++F+ M  K    P I+ Y  +++   +  +V D VE+ 
Sbjct: 363 TITYNLLINGFCMHNRLDEAKQMFKFMVSK-DCLPNIQTYNTLINGFCKCKRVEDGVELF 421

Query: 495 EKMP---MEPDAIVWGSLLGACRTHMKLDLAEVAVEKL-AQLEPKNAGPYVLLSHMYASK 550
            +M    +  + + + +++         D A++  +++ +   P +   Y +L H   S 
Sbjct: 422 REMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSY 481

Query: 551 GRWEDVEVV 559
           G+ +   V+
Sbjct: 482 GKLDTALVI 490


>AT5G41170.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr5:16478860-16480443 REVERSE
           LENGTH=527
          Length = 527

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 102/418 (24%), Positives = 192/418 (45%), Gaps = 39/418 (9%)

Query: 53  SWNAMVAAYFQAHQPHQAVT----LFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAM 108
           + N ++  + Q+ QP+ A +    + +   E +IV++  +++GF     + EA  + + M
Sbjct: 109 TCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQM 168

Query: 109 PVR----NVVSWTSMVRGYVQEGNVEEAERLFWRMPE----KNVVSWTVMLGGLLKDSRV 160
                  +VV +T+++    + G+V  A  LF +M       +VV +T ++ GL    R 
Sbjct: 169 VEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRW 228

Query: 161 EDARKLFDMMPVK----DVVAVTNMIGGYCEEGRLEEARALFDEMPKR----NVVTWTTM 212
            DA  L   M  +    DV+    +I  + +EG+  +A  L++EM +     N+ T+T++
Sbjct: 229 RDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSL 288

Query: 213 VSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAMPVKPV 268
           ++G+     VD AR++F +M  +    + V++T+++ G+    ++ +A + F  M  K +
Sbjct: 289 INGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGL 348

Query: 269 ----VACNEMIMGFGFDGDVDRAKAVFEKMRER----DDGTWSAMIKVYERKGFELEALG 320
               +    +I GFG  G  + A+ VF  M  R    +  T++ ++      G   +AL 
Sbjct: 349 TGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALM 408

Query: 321 LFARMQR---EGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALIT 377
           +F  MQ+   +G A N                 +    V   + + E D  +   + +I 
Sbjct: 409 IFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQ 468

Query: 378 MYVKCGDLVRAKWIFNRYPLK----DVVMWNSMITGYSQHGLGEEALNVFRDMCLSGV 431
              K G +  A  +F   P K    +VV + +MI+G  + GL  EA  +FR M   GV
Sbjct: 469 GMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKEDGV 526



 Score =  103 bits (256), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 147/338 (43%), Gaps = 41/338 (12%)

Query: 174 DVVAVTNMIGGYCEEGRLEEARALFDEMP----KRNVVTWTTMVSGYARNRRVDVARKLF 229
           D+V  T++I G+C   R+EEA ++ ++M     K +VV +TT++    +N  V+ A  LF
Sbjct: 141 DIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLF 200

Query: 230 EVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVD 285
           + M       + V +T+++ G  +SGR R+A      M  + +                 
Sbjct: 201 DQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKI----------------- 243

Query: 286 RAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXX 345
                     + D  T++A+I  + ++G  L+A  L+  M R   A N            
Sbjct: 244 ----------KPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFC 293

Query: 346 XXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLK----DVV 401
                D  RQ+   +       D+   ++LI  + KC  +  A  IF     K    + +
Sbjct: 294 MEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTI 353

Query: 402 MWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESM 461
            + ++I G+ Q G    A  VF  M   GVPP+  ++  +L    Y+GKVK+   IFE M
Sbjct: 354 TYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDM 413

Query: 462 KCKYQ--VEPGIEHYACMVDLLGRAGQVNDAVEIVEKM 497
           + +    V P I  Y  ++  L   G++  A+ + E M
Sbjct: 414 QKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDM 451



 Score = 92.8 bits (229), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 99/410 (24%), Positives = 174/410 (42%), Gaps = 53/410 (12%)

Query: 112 NVVSWTSMVRGYVQEGNVEEAERLFWRMPE----KNVVSWTVMLGGLLKDSRVEDARKLF 167
           ++V++TS++ G+     +EEA  +  +M E     +VV +T ++  L K+  V  A  LF
Sbjct: 141 DIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLF 200

Query: 168 DMMPV----KDVVAVTNMIGGYCEEGRLEEARALFDEMPKR----NVVTWTTMVSGYARN 219
           D M       DVV  T+++ G C  GR  +A +L   M KR    +V+T+  ++  + + 
Sbjct: 201 DQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKE 260

Query: 220 RRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAMPVK----PVVAC 271
            +   A +L+  M       N  ++T+++ G+   G + EA + F  M  K     VVA 
Sbjct: 261 GKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAY 320

Query: 272 NEMIMGFGFDGDVDRAKAVFEKMRER----DDGTWSAMIKVYERKGFELEALGLFARMQR 327
             +I GF     VD A  +F +M ++    +  T++ +I+ + + G    A  +F+ M  
Sbjct: 321 TSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVS 380

Query: 328 EGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVR 387
            G   N                      +   + + E D    VA  + T          
Sbjct: 381 RGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDG---VAPNIWT---------- 427

Query: 388 AKWIFNRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSY 447
                          +N ++ G   +G  E+AL VF DM    +    I++  ++     
Sbjct: 428 ---------------YNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCK 472

Query: 448 SGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKM 497
           +GKVK    +F S+  K  V+P +  Y  M+  L R G  ++A  +  KM
Sbjct: 473 AGKVKNAVNLFCSLPSK-GVKPNVVTYTTMISGLFREGLKHEAHVLFRKM 521



 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 116/240 (48%), Gaps = 25/240 (10%)

Query: 20  TSTGAISRYARIGQIENARKVFD--ETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETT 77
           T T  I+ +   G ++ AR++F   ET        ++ +++  + +  +   A+ +F   
Sbjct: 284 TYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEM 343

Query: 78  PEK----NIVSWNGMVSGFVKNGMVAEARRVFDAMPVR----NVVSWTSMVRGYVQEGNV 129
            +K    N +++  ++ GF + G    A+ VF  M  R    N+ ++  ++      G V
Sbjct: 344 SQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKV 403

Query: 130 EEAERLFWRMPEK-------NVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDV----VAV 178
           ++A  +F  M ++       N+ ++ V+L GL  + ++E A  +F+ M  +++    +  
Sbjct: 404 KKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITY 463

Query: 179 TNMIGGYCEEGRLEEARALFDEMP----KRNVVTWTTMVSGYARNRRVDVARKLFEVMPE 234
           T +I G C+ G+++ A  LF  +P    K NVVT+TTM+SG  R      A  LF  M E
Sbjct: 464 TIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKE 523


>AT3G16710.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:5690020-5691543 FORWARD
           LENGTH=507
          Length = 507

 Score =  111 bits (278), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 130/242 (53%), Gaps = 24/242 (9%)

Query: 79  EKNIVSWNGMVSGFVKNGMVAEARRVFDAM----PVRNVVSWTSMVRGYVQEGNVEEAER 134
           E N++++  ++  FVK G + EA+ +++ M       +V ++ S++ G    G ++EA +
Sbjct: 255 EPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQ 314

Query: 135 LFWRMPEK----NVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVA----VTNMIGGYC 186
           +F+ M       N V +T ++ G  K  RVED  K+F  M  K VVA     T +I GYC
Sbjct: 315 MFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYC 374

Query: 187 EEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEV 238
             GR + A+ +F++M  R    ++ T+  ++ G   N +V+ A  +FE M +R    N V
Sbjct: 375 LVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIV 434

Query: 239 SWTAMLMGYTHSGRMREASEFFDAM---PVKP-VVACNEMIMGFGFDGDVDRAKAVFEKM 294
           ++T ++ G    G++ +A + F ++    +KP V+    MI GF   G +  A ++F+KM
Sbjct: 435 TYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKM 494

Query: 295 RE 296
           +E
Sbjct: 495 KE 496



 Score =  106 bits (265), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 168/348 (48%), Gaps = 34/348 (9%)

Query: 20  TSTGAISRYARIGQIENARKVFDETPHI--HRTTSSWNAMVAAYFQAHQPHQAVTLFETT 77
           T T  ++ Y    +IE+A  +FD+   +       ++  ++    +    + AV LF   
Sbjct: 155 TFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQM 214

Query: 78  ----PEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVR----NVVSWTSMVRGYVQEGNV 129
                  N+V++N +V+G  + G   +A  +   M  R    NV+++T+++  +V+ G +
Sbjct: 215 GTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKL 274

Query: 130 EEAERLFWRMPE----KNVVSWTVMLGGLLKDSRVEDARKLFDMMP----VKDVVAVTNM 181
            EA+ L+  M +     +V ++  ++ GL     +++AR++F +M       + V  T +
Sbjct: 275 MEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTL 334

Query: 182 IGGYCEEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMPERNE 237
           I G+C+  R+E+   +F EM ++    N +T+T ++ GY    R DVA+++F  M  R  
Sbjct: 335 IHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRA 394

Query: 238 V----SWTAMLMGYTHSGRMREASEFFDAMPVKP----VVACNEMIMGFGFDGDVDRA-- 287
                ++  +L G   +G++ +A   F+ M  +     +V    +I G    G V+ A  
Sbjct: 395 PPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFD 454

Query: 288 --KAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALN 333
              ++F K  + +  T++ MI  + R+G   EA  LF +M+ +G   N
Sbjct: 455 LFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPN 502



 Score = 95.5 bits (236), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 100/451 (22%), Positives = 189/451 (41%), Gaps = 64/451 (14%)

Query: 110 VRNVVSWTSMVRGYVQEGNVEEAERLFWRM----PEKNVVSWTVMLGGLLKDSRVEDARK 165
           +R   S+  ++R  +      +A  LF RM    P  +++ +T +L  + K +R +    
Sbjct: 45  IRAFSSYRKILRNGLHNLQFNDALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVIS 104

Query: 166 LFDMMPV---------------------------------------KDVVAVTNMIGGYC 186
           LF+ M +                                        D+V  T+++ GYC
Sbjct: 105 LFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYC 164

Query: 187 EEGRLEEARALFDEMP----KRNVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEV 238
              R+E+A ALFD++     K NVVT+TT++    +NR ++ A +LF  M       N V
Sbjct: 165 HWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVV 224

Query: 239 SWTAMLMGYTHSGRMREASEFFDAM---PVKP-VVACNEMIMGFGFDGDVDRAKAVFEKM 294
           ++ A++ G    GR  +A+     M    ++P V+    +I  F   G +  AK ++  M
Sbjct: 225 TYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVM 284

Query: 295 RER----DDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXX 350
            +     D  T+ ++I      G   EA  +F  M+R G   N                 
Sbjct: 285 IQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRV 344

Query: 351 DHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLK----DVVMWNSM 406
           + G ++   + +     +    + LI  Y   G    A+ +FN+   +    D+  +N +
Sbjct: 345 EDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVL 404

Query: 407 ITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQ 466
           + G   +G  E+AL +F  M    +  + +++  ++      GKV++  ++F S+  K  
Sbjct: 405 LDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSK-G 463

Query: 467 VEPGIEHYACMVDLLGRAGQVNDAVEIVEKM 497
           ++P +  Y  M+    R G +++A  + +KM
Sbjct: 464 MKPNVITYTTMISGFCRRGLIHEADSLFKKM 494



 Score = 90.5 bits (223), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 155/346 (44%), Gaps = 24/346 (6%)

Query: 141 EKNVVSWTVMLGGLLKDSRVEDARKLFDM---MPVK-DVVAVTNMIGGYCEEGRLEEARA 196
           E ++V++T +L G    +R+EDA  LFD    M  K +VV  T +I   C+   L  A  
Sbjct: 150 EPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVE 209

Query: 197 LFDEM----PKRNVVTWTTMVSGYAR-NRRVDVARKLFEVMPER---NEVSWTAMLMGYT 248
           LF++M     + NVVT+  +V+G     R  D A  L ++M  R   N +++TA++  + 
Sbjct: 210 LFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFV 269

Query: 249 HSGRMREASEFFDA---MPVKP-VVACNEMIMGFGFDGDVDRAKAVFEKMRER----DDG 300
             G++ EA E ++    M V P V     +I G    G +D A+ +F  M       ++ 
Sbjct: 270 KVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEV 329

Query: 301 TWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARL 360
            ++ +I  + +     + + +F  M ++G   N                 D  ++V  ++
Sbjct: 330 IYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQM 389

Query: 361 VRSEFDQDLYVASALITMYVKCGDLVRAKWIF----NRYPLKDVVMWNSMITGYSQHGLG 416
                  D+   + L+      G + +A  IF     R    ++V +  +I G  + G  
Sbjct: 390 SSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKV 449

Query: 417 EEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMK 462
           E+A ++F  +   G+ P+ I++  ++S     G + E   +F+ MK
Sbjct: 450 EDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMK 495



 Score = 87.0 bits (214), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 160/352 (45%), Gaps = 28/352 (7%)

Query: 112 NVVSWTSMVRGYVQEGNVEEAERLFWRMP----EKNVVSWTVMLGGLLKDSRVEDARKLF 167
           ++V++TS++ GY     +E+A  LF ++     + NVV++T ++  L K+  +  A +LF
Sbjct: 152 DLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELF 211

Query: 168 DMMPVK----DVVAVTNMIGGYCEEGRLEEARALFDEMPKR----NVVTWTTMVSGYARN 219
           + M       +VV    ++ G CE GR  +A  L  +M KR    NV+T+T ++  + + 
Sbjct: 212 NQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKV 271

Query: 220 RRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAMPVKPV----VAC 271
            ++  A++L+ VM +     +  ++ +++ G    G + EA + F  M         V  
Sbjct: 272 GKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIY 331

Query: 272 NEMIMGFGFDGDVDRAKAVFEKMRER----DDGTWSAMIKVYERKGFELEALGLFARMQR 327
             +I GF     V+    +F +M ++    +  T++ +I+ Y   G    A  +F +M  
Sbjct: 332 TTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSS 391

Query: 328 EGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVR 387
             A  +                 +    +   + + E D ++   + +I    K G +  
Sbjct: 392 RRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVED 451

Query: 388 AKWIFNRYPLK----DVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDD 435
           A  +F     K    +V+ + +MI+G+ + GL  EA ++F+ M   G  P++
Sbjct: 452 AFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNE 503



 Score = 76.3 bits (186), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 95/433 (21%), Positives = 175/433 (40%), Gaps = 54/433 (12%)

Query: 146 SWTVMLGGLLKDSRVEDARKLFDMM----PVKDVVAVTNMIGGYCEEGRLEEARALFDEM 201
           S+  +L   L + +  DA  LF  M    P+  ++  T ++    +  R +   +LF++M
Sbjct: 50  SYRKILRNGLHNLQFNDALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQM 109

Query: 202 P---------KRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGR 252
                       N+V     +S     R      K+ ++  E + V++T++L GY H  R
Sbjct: 110 QILGIPPLLCTCNIVMHCVCLSSQP-CRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNR 168

Query: 253 MREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERK 312
           + +A   FD             I+G GF  +V                T++ +I+   + 
Sbjct: 169 IEDAIALFDQ------------ILGMGFKPNVV---------------TYTTLIRCLCKN 201

Query: 313 GFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVA 372
                A+ LF +M   G+  N                      +   +++   + ++   
Sbjct: 202 RHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITF 261

Query: 373 SALITMYVKCGDLVRAKWIFN------RYPLKDVVMWNSMITGYSQHGLGEEALNVFRDM 426
           +ALI  +VK G L+ AK ++N       YP  DV  + S+I G   +GL +EA  +F  M
Sbjct: 262 TALIDAFVKVGKLMEAKELYNVMIQMSVYP--DVFTYGSLINGLCMYGLLDEARQMFYLM 319

Query: 427 CLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQ 486
             +G  P+++ +  ++     S +V++G +IF  M  K  V   I  Y  ++      G+
Sbjct: 320 ERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTIT-YTVLIQGYCLVGR 378

Query: 487 VNDAVEIVEKMPME---PDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEPK-NAGPYVL 542
            + A E+  +M      PD   +  LL     + K++ A +  E + + E   N   Y +
Sbjct: 379 PDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTI 438

Query: 543 LSHMYASKGRWED 555
           +       G+ ED
Sbjct: 439 IIQGMCKLGKVED 451



 Score = 56.6 bits (135), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 99/210 (47%), Gaps = 9/210 (4%)

Query: 365 FDQDLYVASALITMYVKCGDLVRAKWIFNRYPLK----DVVMWNSMITGYSQHGLGEEAL 420
           F  ++   + LI    K   L  A  +FN+        +VV +N+++TG  + G   +A 
Sbjct: 184 FKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAA 243

Query: 421 NVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDL 480
            + RDM    + P+ I+F  ++ A    GK+ E +E++  M  +  V P +  Y  +++ 
Sbjct: 244 WLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVM-IQMSVYPDVFTYGSLING 302

Query: 481 LGRAGQVNDAVE---IVEKMPMEPDAIVWGSLL-GACRTHMKLDLAEVAVEKLAQLEPKN 536
           L   G +++A +   ++E+    P+ +++ +L+ G C++    D  ++  E   +    N
Sbjct: 303 LCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVAN 362

Query: 537 AGPYVLLSHMYASKGRWEDVEVVREKIKTR 566
              Y +L   Y   GR +  + V  ++ +R
Sbjct: 363 TITYTVLIQGYCLVGRPDVAQEVFNQMSSR 392


>AT1G62590.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:23177294-23179198 REVERSE LENGTH=634
          Length = 634

 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 111/548 (20%), Positives = 239/548 (43%), Gaps = 61/548 (11%)

Query: 54  WNAMVAAYFQAHQPHQAVTLFETTPEKNIV----SWNGMVSGFVKNGMVAEARRVFDAMP 109
           +N +++A  +  +    ++L E      IV    ++N +++ F +   ++ A  +   M 
Sbjct: 88  FNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMM 147

Query: 110 VR----NVVSWTSMVRGYVQEGNVEEAERLFWRMPE----KNVVSWTVMLGGLLKDSRVE 161
                 ++V+ +S++ GY     + +A  L  +M E     + +++T ++ GL   ++  
Sbjct: 148 KLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKAS 207

Query: 162 DARKLFDMMPVK----DVVAVTNMIGGYCEEGRLEEARALFDEMP----KRNVVTWTTMV 213
           +A  L D M  +    ++V    ++ G C+ G  + A  L ++M     + +VV + T++
Sbjct: 208 EAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTII 267

Query: 214 SGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVV 269
               + R VD A  LF+ M  +    N V++++++      GR  +AS+    M      
Sbjct: 268 DSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDM------ 321

Query: 270 ACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREG 329
                                 EK    +  T++A+I  + ++G  +EA  L+  M +  
Sbjct: 322 ---------------------IEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRS 360

Query: 330 AALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAK 389
              +                 D  +Q+   +V  +   D+   + LI  + K   +    
Sbjct: 361 IDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGT 420

Query: 390 WIF----NRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSAC 445
            +F    +R  + D V + ++I G    G  + A  VF+ M   GVPPD +++  +L   
Sbjct: 421 ELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGL 480

Query: 446 SYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPM---EPD 502
             +GK+++  E+F+ M+ K +++  I  Y  M++ + +AG+V+D  ++   + +   +P+
Sbjct: 481 CNNGKLEKALEVFDYMQ-KSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPN 539

Query: 503 AIVWGSLLGACRTHMKLDLAEVAVEKLAQLEP-KNAGPYVLLSHMYASKG-RWEDVEVVR 560
            + + +++    +   L  A   ++K+ +  P  N+G Y  L   +   G +    E++R
Sbjct: 540 VVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIR 599

Query: 561 EKIKTRSV 568
           E    R V
Sbjct: 600 EMRSCRFV 607


>AT1G31840.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:11424006-11426528 FORWARD
           LENGTH=840
          Length = 840

 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 115/530 (21%), Positives = 234/530 (44%), Gaps = 47/530 (8%)

Query: 73  LFETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRNV----VSWTSMVRGYVQEGN 128
           + +  P  N+V++  +++GF K G +  A  +F  M  R +    +++++++ GY + G 
Sbjct: 277 VLDCGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGM 336

Query: 129 VEEAERLFWRMPEK----NVVSWTVMLGGLLKDSRVEDARKLFDMMPVK----DVVAVTN 180
           +    +LF +   K    +VV ++  +   +K   +  A  ++  M  +    +VV  T 
Sbjct: 337 LGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTI 396

Query: 181 MIGGYCEEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMPER- 235
           +I G C++GR+ EA  ++ ++ KR    ++VT+++++ G+ +   +     L+E M +  
Sbjct: 397 LIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMG 456

Query: 236 ---NEVSWTAMLMGYTHSGRMREASEFFDAMPVKP----VVACNEMIMGFGFDGDVDRAK 288
              + V +  ++ G +  G M  A  F   M  +     VV  N +I G+      D A 
Sbjct: 457 YPPDVVIYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEAL 516

Query: 289 AVFEKMR----ERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXX 344
            VF  M     + D  T++ +++V   +G   EAL LF RM + G   +           
Sbjct: 517 KVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDAF 576

Query: 345 XXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRY------PLK 398
                   G Q+   + R++   D+ V + +I +  KC  +  A   FN        P  
Sbjct: 577 CKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEP-- 634

Query: 399 DVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIF 458
           D+V +N+MI GY      +EA  +F  + ++   P+ ++   ++     +  +     +F
Sbjct: 635 DIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRMF 694

Query: 459 ESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMP---MEPDAIVWGSLL-GAC- 513
             M  K   +P    Y C++D   ++  +  + ++ E+M    + P  + +  ++ G C 
Sbjct: 695 SIMAEKGS-KPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSIVSYSIIIDGLCK 753

Query: 514 --RTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVRE 561
             R     ++   A++  A+L P +   Y +L   Y   GR  +  ++ E
Sbjct: 754 RGRVDEATNIFHQAID--AKLLP-DVVAYAILIRGYCKVGRLVEAALLYE 800



 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 101/454 (22%), Positives = 201/454 (44%), Gaps = 40/454 (8%)

Query: 22  TGAISRYARIGQIENARKVFDE--TPHIHRTTSSWNAMVAAYFQAHQPHQAVTLF----E 75
           +  I  Y + G +  A  V+       I     ++  ++    Q  + ++A  ++    +
Sbjct: 360 SSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILK 419

Query: 76  TTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVR----NVVSWTSMVRGYVQEGNVEE 131
              E +IV+++ ++ GF K G +     +++ M       +VV +  +V G  ++G +  
Sbjct: 420 RGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQGLMLH 479

Query: 132 AERLFWRMPEK----NVVSWTVMLGGLLKDSRVEDARKLFDMMPV----KDVVAVTNMIG 183
           A R   +M  +    NVV +  ++ G  + +R ++A K+F +M +     DV   T ++ 
Sbjct: 480 AMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMR 539

Query: 184 GYCEEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVS 239
               EGRLEEA  LF  M K     + + + T++  + ++ +  +  +LF++M +RN++S
Sbjct: 540 VSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDAFCKHMKPTIGLQLFDLM-QRNKIS 598

Query: 240 -----WTAMLMGYTHSGRMREASEFFDAM---PVKP-VVACNEMIMGFGFDGDVDRAKAV 290
                   ++       R+ +AS+FF+ +    ++P +V  N MI G+     +D A+ +
Sbjct: 599 ADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERI 658

Query: 291 FEKMRERDDG----TWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXX 346
           FE ++    G    T + +I V  +      A+ +F+ M  +G+  N             
Sbjct: 659 FELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDWFSK 718

Query: 347 XXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYP----LKDVVM 402
               +   ++   +        +   S +I    K G +  A  IF++      L DVV 
Sbjct: 719 SVDIEGSFKLFEEMQEKGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVA 778

Query: 403 WNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDI 436
           +  +I GY + G   EA  ++  M  +GV PDD+
Sbjct: 779 YAILIRGYCKVGRLVEAALLYEHMLRNGVKPDDL 812



 Score = 76.3 bits (186), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 118/559 (21%), Positives = 217/559 (38%), Gaps = 126/559 (22%)

Query: 92  FVKNGMVAEARRVFDAMPVR-----NVV------SWTSMVRGYVQE-----GNVEEAERL 135
            ++NGM   A +VFD M        NV+      S  + V  ++ E     G V++A  +
Sbjct: 109 LIRNGMFDVADKVFDEMITNRGKDFNVLGSIRDRSLDADVCKFLMECCCRYGMVDKALEI 168

Query: 136 FWRMPEKNVV----SWTVMLGGLLKDSRVEDARKLFDMMP--------------VKD--- 174
           F    +  VV    S   ML  L+   RV+     FD +               V D   
Sbjct: 169 FVYSTQLGVVIPQDSVYRMLNSLIGSDRVDLIADHFDKLCRGGIEPSGVSAHGFVLDALF 228

Query: 175 -----------------------VVAVTNMIGGYCEEGRLEEARAL---FDEMPKRNVVT 208
                                  +V+   ++ G   +     +R L    D  P  NVVT
Sbjct: 229 CKGEVTKALDFHRLVMERGFRVGIVSCNKVLKGLSVDQIEVASRLLSLVLDCGPAPNVVT 288

Query: 209 WTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAMP 264
           + T+++G+ +   +D A  LF+VM +R    + ++++ ++ GY  +G +    + F    
Sbjct: 289 FCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQAL 348

Query: 265 VK----PVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDG----TWSAMIKVYERKGFEL 316
            K     VV  +  I  +   GD+  A  V+++M  +       T++ +IK   + G   
Sbjct: 349 HKGVKLDVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIY 408

Query: 317 EALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALI 376
           EA G++ ++ + G   +                   G  ++  +++  +  D+ +   L+
Sbjct: 409 EAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLV 468

Query: 377 TMYVKCGDLVRAKWIFNRYPLK--------DVVMWNSMITGYSQHGLGEEALNVFRDMCL 428
               K G ++ A     R+ +K        +VV++NS+I G+ +    +EAL VFR M +
Sbjct: 469 DGLSKQGLMLHAM----RFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGI 524

Query: 429 SGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVD--------- 479
            G+ PD  +F  V+      G+++E   +F  M  K  +EP    Y  ++D         
Sbjct: 525 YGIKPDVATFTTVMRVSIMEGRLEEALFLFFRM-FKMGLEPDALAYCTLIDAFCKHMKPT 583

Query: 480 --------------------------LLGRAGQVNDAVEIVEKM---PMEPDAIVWGSLL 510
                                     LL +  ++ DA +    +    MEPD + + +++
Sbjct: 584 IGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMI 643

Query: 511 GACRTHMKLDLAEVAVEKL 529
               +  +LD AE   E L
Sbjct: 644 CGYCSLRRLDEAERIFELL 662


>AT3G53700.1 | Symbols: MEE40 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:19900303-19902567 FORWARD
           LENGTH=754
          Length = 754

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 108/484 (22%), Positives = 205/484 (42%), Gaps = 94/484 (19%)

Query: 47  IHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEKNIV----SWNGMVSGFVKNGMVAEAR 102
           I    S++N ++ A  +AHQ   A+ + E  P   +V    ++  ++ G+++ G +  A 
Sbjct: 185 IKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGAL 244

Query: 103 RVFDAMPVRNVVSWTS-----MVRGYVQEGNVEEAERLFWRMPEKN-----VVSWTVMLG 152
           R+ + M V    SW++     +V G+ +EG VE+A      M  ++       ++  ++ 
Sbjct: 245 RIREQM-VEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVN 303

Query: 153 GLLKDSRVEDARKLFDMMPVK----DVVAVTNMIGGYCEEGRLEEARALFDEMPKR---- 204
           GL K   V+ A ++ D+M  +    DV    ++I G C+ G ++EA  + D+M  R    
Sbjct: 304 GLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSP 363

Query: 205 NVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMP 264
           N VT+ T++S   +  +V+ A +L  V+               T  G + +   F     
Sbjct: 364 NTVTYNTLISTLCKENQVEEATELARVL---------------TSKGILPDVCTF----- 403

Query: 265 VKPVVACNEMIMGFGFDGDVDRAKAVFEKMR----ERDDGTWSAMIKVYERKGFELEALG 320
                  N +I G     +   A  +FE+MR    E D+ T++ +I     KG   EAL 
Sbjct: 404 -------NSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALN 456

Query: 321 LFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYV 380
           +  +M+  G A                                   + +   + LI  + 
Sbjct: 457 MLKQMELSGCA-----------------------------------RSVITYNTLIDGFC 481

Query: 381 KCGDLVRAKWIFNRYPL----KDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDI 436
           K      A+ IF+   +    ++ V +N++I G  +    E+A  +   M + G  PD  
Sbjct: 482 KANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKY 541

Query: 437 SFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEK 496
           ++  +L+     G +K+  +I ++M      EP I  Y  ++  L +AG+V  A +++  
Sbjct: 542 TYNSLLTHFCRGGDIKKAADIVQAMTSN-GCEPDIVTYGTLISGLCKAGRVEVASKLLRS 600

Query: 497 MPME 500
           + M+
Sbjct: 601 IQMK 604



 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 79/388 (20%), Positives = 147/388 (37%), Gaps = 79/388 (20%)

Query: 174 DVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVV----TWTTMVSGYARNRRVDVARKLF 229
           DV     +I   C   +L  A  + ++MP   +V    T+TT++ GY     +D A ++ 
Sbjct: 188 DVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIR 247

Query: 230 EVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKA 289
           E M E    SW+                           V+ N ++ GF  +G V+ A  
Sbjct: 248 EQMVEFG-CSWSN--------------------------VSVNVIVHGFCKEGRVEDALN 280

Query: 290 VFEKMRERD-----DGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXX 344
             ++M  +D       T++ ++    + G    A+ +   M +EG   +           
Sbjct: 281 FIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGL 340

Query: 345 XXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRA----KWIFNRYPLKDV 400
                     +V  +++  +   +    + LI+   K   +  A    + + ++  L DV
Sbjct: 341 CKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDV 400

Query: 401 VMWNSMITG-----------------------------------YSQHGLGEEALNVFRD 425
             +NS+I G                                       G  +EALN+ + 
Sbjct: 401 CTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQ 460

Query: 426 MCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAG 485
           M LSG     I++  ++     + K +E  EIF+ M+  + V      Y  ++D L ++ 
Sbjct: 461 MELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEV-HGVSRNSVTYNTLIDGLCKSR 519

Query: 486 QVNDAVEIVEKMPME---PDAIVWGSLL 510
           +V DA +++++M ME   PD   + SLL
Sbjct: 520 RVEDAAQLMDQMIMEGQKPDKYTYNSLL 547



 Score = 52.8 bits (125), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 72/165 (43%), Gaps = 13/165 (7%)

Query: 399 DVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIF 458
           D   +N+++ G  + G  + A+ +   M   G  PD  ++  V+S     G+VKE  E+ 
Sbjct: 294 DQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVL 353

Query: 459 ESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPME---PDAIVWGSLL-GACR 514
           + M  +    P    Y  ++  L +  QV +A E+   +  +   PD   + SL+ G C 
Sbjct: 354 DQMITR-DCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCL 412

Query: 515 THMKLDLAEVAVEKLAQLEPKNAGP----YVLLSHMYASKGRWED 555
           T        VA+E   ++  K   P    Y +L     SKG+ ++
Sbjct: 413 TRNH----RVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDE 453


>AT1G63330.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23489840-23491519 FORWARD
           LENGTH=559
          Length = 559

 Score =  109 bits (272), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 110/548 (20%), Positives = 239/548 (43%), Gaps = 61/548 (11%)

Query: 54  WNAMVAAYFQAHQPHQAVTLFETTP----EKNIVSWNGMVSGFVKNGMVAEARRVFDAMP 109
           +N +++A  +  +    ++L E         N+ ++N +++ F +   ++ A  +   M 
Sbjct: 13  FNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMM 72

Query: 110 VR----NVVSWTSMVRGYVQEGNVEEAERLFWRMPE----KNVVSWTVMLGGLLKDSRVE 161
                 ++V+ +S++ GY     + +A  L  +M E     + +++T ++ GL   ++  
Sbjct: 73  KLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKAS 132

Query: 162 DARKLFDMMPVK----DVVAVTNMIGGYCEEGRLEEARALFDEMP----KRNVVTWTTMV 213
           +A  L D M  +    ++V    ++ G C+ G ++ A  L ++M     + +VV + T++
Sbjct: 133 EAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTII 192

Query: 214 SGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVV 269
               + R VD A  LF+ M  +    N V++++++      GR  +AS+    M      
Sbjct: 193 DSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDM------ 246

Query: 270 ACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQREG 329
                                 EK    +  T++A+I  + ++G  +EA  L   M +  
Sbjct: 247 ---------------------IEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRS 285

Query: 330 AALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAK 389
              +                 D  +Q+   +V  +   DL   + LI  + K   +    
Sbjct: 286 IDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGT 345

Query: 390 WIF----NRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSAC 445
            +F    +R  + D V + ++I G    G  + A  VF+ M   GVPPD +++  +L   
Sbjct: 346 ELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGL 405

Query: 446 SYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPM---EPD 502
             +GK+++  E+F+ M+ K +++  I  Y  M++ + +AG+V+D  ++   + +   +P+
Sbjct: 406 CNNGKLEKALEVFDYMQ-KSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPN 464

Query: 503 AIVWGSLLGACRTHMKLDLAEVAVEKLAQLEP-KNAGPYVLLSHMYASKG-RWEDVEVVR 560
            + + +++    +   L  A   ++K+ +  P  ++G Y  L   +   G +    E++R
Sbjct: 465 VVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIR 524

Query: 561 EKIKTRSV 568
           E    R V
Sbjct: 525 EMRSCRFV 532



 Score =  109 bits (272), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 159/324 (49%), Gaps = 36/324 (11%)

Query: 25  ISRYARIGQIENARKVFDE--TPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEK-- 80
           I    +   +++A  +F E  T  I     +++++++      +   A  L     EK  
Sbjct: 192 IDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKI 251

Query: 81  --NIVSWNGMVSGFVKNGMVAEARRVFDAMPVR----NVVSWTSMVRGYVQEGNVEEAER 134
             N+V++N ++  FVK G   EA ++ D M  R    ++ ++ S++ G+     +++A++
Sbjct: 252 NPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQ 311

Query: 135 LFWRMPEKNVV----SWTVMLGGLLKDSRVEDARKLFDMMP----VKDVVAVTNMIGGYC 186
           +F  M  K+      ++  ++ G  K  RVED  +LF  M     V D V  T +I G  
Sbjct: 312 MFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLF 371

Query: 187 EEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVS--- 239
            +G  + A+ +F +M       +++T++ ++ G   N +++ A ++F+ M +++E+    
Sbjct: 372 HDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYM-QKSEIKLDI 430

Query: 240 --WTAMLMGYTHSGRMREASEFFDAMP---VKP-VVACNEMIMGFGFDGDVDRAKAVFEK 293
             +T M+ G   +G++ +  + F ++    VKP VV  N MI G      +  A A+ +K
Sbjct: 431 YIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKK 490

Query: 294 MRER----DDGTWSAMIKVYERKG 313
           M+E     D GT++ +I+ + R G
Sbjct: 491 MKEDGPLPDSGTYNTLIRAHLRDG 514


>AT5G64320.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:25723247-25725439 REVERSE
           LENGTH=730
          Length = 730

 Score =  108 bits (271), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 108/511 (21%), Positives = 225/511 (44%), Gaps = 39/511 (7%)

Query: 47  IHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPE----KNIVSWNGMVSGFVKNGMVAEAR 102
           I  T  ++  ++ A+   ++   A++L     +     N V +  ++    K   V EA 
Sbjct: 213 IPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEAL 272

Query: 103 RVFDAMPVRNVV----SWTSMVRGYVQEGNVEEAERLFWRMPEKNV----VSWTVMLGGL 154
           ++ + M +   V    ++  ++ G  +   + EA ++  RM  +      +++  ++ GL
Sbjct: 273 QLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGL 332

Query: 155 LKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKR-----NVVTW 209
            K  RV+ A+ LF  +P  ++V    +I G+   GRL++A+A+  +M        +V T+
Sbjct: 333 CKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTY 392

Query: 210 TTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAMP- 264
            +++ GY +   V +A ++   M  +    N  S+T ++ G+   G++ EA    + M  
Sbjct: 393 NSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSA 452

Query: 265 --VKP-VVACNEMIMGFGFDGDVDRAKAVFEKMRER----DDGTWSAMIKVYERKGFELE 317
             +KP  V  N +I  F  +  +  A  +F +M  +    D  T++++I           
Sbjct: 453 DGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKH 512

Query: 318 ALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALIT 377
           AL L   M  EG   N                    R++   +V      D    ++LI 
Sbjct: 513 ALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIK 572

Query: 378 MYVKCGDLVRAKWIFNRYPLKD-----VVMWNSMITGYSQHGLGEEALNVFRDMCLSGVP 432
              + G++ +A+ +F +  L+D      +  N +I G  + G+ EEA+   ++M L G  
Sbjct: 573 GLCRAGEVDKARSLFEKM-LRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGST 631

Query: 433 PDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVE 492
           PD ++F  +++    +G++++G  +F  ++ +  + P    +  ++  L + G V DA  
Sbjct: 632 PDIVTFNSLINGLCRAGRIEDGLTMFRKLQAE-GIPPDTVTFNTLMSWLCKGGFVYDACL 690

Query: 493 IVEKMPME---PDAIVWGSLLGACRTHMKLD 520
           ++++   +   P+   W  LL +      LD
Sbjct: 691 LLDEGIEDGFVPNHRTWSILLQSIIPQETLD 721


>AT1G12775.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:4353906-4355840 FORWARD
           LENGTH=644
          Length = 644

 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/413 (22%), Positives = 186/413 (45%), Gaps = 32/413 (7%)

Query: 82  IVSWNGMVSGFVKNGMVAEARRVFDAMPVR----NVVSWTSMVRGYVQEGNVEEAERLFW 137
           +++ N +V+G   NG V++A  + D M       N V++  ++    + G    A  L  
Sbjct: 193 LITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLR 252

Query: 138 RMPEKNV----VSWTVMLGGLLKDSRVEDARKLFDMMPVK----DVVAVTNMIGGYCEEG 189
           +M E+N+    V +++++ GL KD  +++A  LF+ M +K    D++    +IGG+C  G
Sbjct: 253 KMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAG 312

Query: 190 RLEEARALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWT 241
           R ++   L  +M KR    NVVT++ ++  + +  ++  A +L + M +R    N +++ 
Sbjct: 313 RWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYN 372

Query: 242 AMLMGYTHSGRMREASEFFDAMPVK----PVVACNEMIMGFGFDGDVDRAKAVFEKMRER 297
           +++ G+    R+ EA +  D M  K     ++  N +I G+     +D    +F +M  R
Sbjct: 373 SLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLR 432

Query: 298 ----DDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHG 353
               +  T++ +++ + + G    A  LF  M       +                 +  
Sbjct: 433 GVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKA 492

Query: 354 RQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVVM----WNSMITG 409
            ++  ++ +S+ + D+ +   +I        +  A  +F   PLK V +    +N MI+ 
Sbjct: 493 LEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISE 552

Query: 410 YSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMK 462
             +     +A  +FR M   G  PD++++  ++ A           E+ E MK
Sbjct: 553 LCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMK 605



 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 104/487 (21%), Positives = 211/487 (43%), Gaps = 43/487 (8%)

Query: 53  SWNAMVAAYFQAHQPHQAVTLF----ETTPEKNIVSWNGMVSGFVKNG----MVAEARRV 104
           S+   +++     +   AV LF    ++ P   ++ +N + S   K      ++A  +++
Sbjct: 55  SYRDKLSSGLVGIKADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQM 114

Query: 105 FDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMP----EKNVVSWTVMLGGLLKDSRV 160
                  ++ + + M+  + +   +  A     ++     E + V +  +L GL  + RV
Sbjct: 115 ESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRV 174

Query: 161 EDARKLFDMM------PVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKR----NVVTWT 210
            +A +L D M      P   ++ +  ++ G C  G++ +A  L D M +     N VT+ 
Sbjct: 175 SEALELVDRMVEMGHKPT--LITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYG 232

Query: 211 TMVSGYARNRRVDVARKLFEVMPERN----EVSWTAMLMGYTHSGRMREASEFFDAMPVK 266
            +++   ++ +  +A +L   M ERN     V ++ ++ G    G +  A   F+ M +K
Sbjct: 233 PVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIK 292

Query: 267 ----PVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDG----TWSAMIKVYERKGFELEA 318
                ++  N +I GF   G  D    +   M +R       T+S +I  + ++G   EA
Sbjct: 293 GFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREA 352

Query: 319 LGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITM 378
             L   M + G A N                 +   Q+   ++    D D+   + LI  
Sbjct: 353 DQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILING 412

Query: 379 YVKCGDLVRAKWIFNRYPLKDV----VMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPD 434
           Y K   +     +F    L+ V    V +N+++ G+ Q G  E A  +F++M    V PD
Sbjct: 413 YCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPD 472

Query: 435 DISFIGVLSACSYSGKVKEGREIFESM-KCKYQVEPGIEHYACMVDLLGRAGQVNDAVEI 493
            +S+  +L     +G++++  EIF  + K K +++ GI  Y  ++  +  A +V+DA ++
Sbjct: 473 IVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGI--YMIIIHGMCNASKVDDAWDL 530

Query: 494 VEKMPME 500
              +P++
Sbjct: 531 FCSLPLK 537



 Score = 83.6 bits (205), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/292 (20%), Positives = 139/292 (47%), Gaps = 29/292 (9%)

Query: 25  ISRYARIGQIENARKVFDETPH--IHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEK-- 80
           I  + + G++  A ++  E     I   T ++N+++  + + ++  +A+ + +    K  
Sbjct: 340 IDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGC 399

Query: 81  --NIVSWNGMVSGFVKNGMVAEARRVFDAMPVR----NVVSWTSMVRGYVQEGNVEEAER 134
             +I+++N +++G+ K   + +   +F  M +R    N V++ ++V+G+ Q G +E A++
Sbjct: 400 DPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKK 459

Query: 135 LFWRMPEK----NVVSWTVMLGGLLKDSRVEDARKLFDMMPVK----DVVAVTNMIGGYC 186
           LF  M  +    ++VS+ ++L GL  +  +E A ++F  +       D+     +I G C
Sbjct: 460 LFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMC 519

Query: 187 EEGRLEEARALFDEMP----KRNVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEV 238
              ++++A  LF  +P    K +   +  M+S   R   +  A  LF  M E     +E+
Sbjct: 520 NASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDEL 579

Query: 239 SWTAMLMGYTHSGRMREASEFFDAMPVKPV---VACNEMIMGFGFDGDVDRA 287
           ++  ++  +        A+E  + M        V+  +M++     G++D++
Sbjct: 580 TYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMVINMLSSGELDKS 631



 Score = 80.1 bits (196), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 96/465 (20%), Positives = 193/465 (41%), Gaps = 65/465 (13%)

Query: 132 AERLFWRMPEKNVVSWTVMLGGLLKDSRVEDARKLF-DMM---PVKDVVAVTNMIGGYCE 187
            ER F    ++N+ S+   L   L   + +DA  LF DM+   P+  V+    +     +
Sbjct: 42  CERGFSTFSDRNL-SYRDKLSSGLVGIKADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAK 100

Query: 188 EGRLEEARALFDEMPKRNVV----TWTTMVSGYARNRRVDVA----RKLFEVMPERNEVS 239
             + E   AL  +M  + +     T + M++ + R R++  A     K+ ++  E + V 
Sbjct: 101 TKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVI 160

Query: 240 WTAMLMGYTHSGRMREASEFFDAMPV---KP-VVACNEMIMGFGFDGDVDRAKAVFEKMR 295
           +  +L G     R+ EA E  D M     KP ++  N ++ G   +G V  A  + ++M 
Sbjct: 161 FNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMV 220

Query: 296 ER----DDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXD 351
           E     ++ T+  ++ V  + G    A+ L  +M+     L                   
Sbjct: 221 ETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKL------------------- 261

Query: 352 HGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLK----DVVMWNSMI 407
                           D    S +I    K G L  A  +FN   +K    D++ +N++I
Sbjct: 262 ----------------DAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLI 305

Query: 408 TGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQV 467
            G+   G  ++   + RDM    + P+ ++F  ++ +    GK++E  ++ + M  +  +
Sbjct: 306 GGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMM-QRGI 364

Query: 468 EPGIEHYACMVDLLGRAGQVNDAVEIVEKM---PMEPDAIVWGSLL-GACRTHMKLDLAE 523
            P    Y  ++D   +  ++ +A+++V+ M     +PD + +  L+ G C+ +   D  E
Sbjct: 365 APNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLE 424

Query: 524 VAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSV 568
           +  E   +    N   Y  L   +   G+ E  + + +++ +R V
Sbjct: 425 LFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRV 469


>AT3G06920.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:2181717-2184449 FORWARD
           LENGTH=871
          Length = 871

 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 120/558 (21%), Positives = 232/558 (41%), Gaps = 80/558 (14%)

Query: 52  SSWNAMVAAYFQAHQPHQAVTLF----ETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDA 107
           S++  ++ A+   +     +TLF    E   E  +  +  ++ GF K G V  A  + D 
Sbjct: 169 SAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDE 228

Query: 108 MPVR----NVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV----VSWTVMLGGLLKDSR 159
           M       ++V +   +  + + G V+ A + F  +    +    V++T M+G L K +R
Sbjct: 229 MKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANR 288

Query: 160 VEDARKLFDMMP----VKDVVAVTNMIGGYCEEGRLEEARAL------------------ 197
           +++A ++F+ +     V    A   MI GY   G+ +EA +L                  
Sbjct: 289 LDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNC 348

Query: 198 -----------------FDEMPKR---NVVTWTTMVSGYARNRRVDVARKLFEVMPER-- 235
                            F+EM K    N+ T+  ++    R  ++D A +L + M +   
Sbjct: 349 ILTCLRKMGKVDEALKVFEEMKKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGL 408

Query: 236 --NEVSWTAMLMGYTHSGRMREASEFFDAMPVK-----PVVACNEMIMGFGFDGDVDRAK 288
             N  +   M+     S ++ EA   F+ M  K      +  C+ +I G G  G VD A 
Sbjct: 409 FPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCS-LIDGLGKVGRVDDAY 467

Query: 289 AVFEKMRERDDGT----WSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXX 344
            V+EKM + D  T    ++++IK +   G + +   ++  M  +  + +           
Sbjct: 468 KVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCM 527

Query: 345 XXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLK------ 398
                 + GR +   +    F  D    S LI   +K G       +F  Y +K      
Sbjct: 528 FKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELF--YSMKEQGCVL 585

Query: 399 DVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIF 458
           D   +N +I G+ + G   +A  +  +M   G  P  +++  V+   +   ++ E   +F
Sbjct: 586 DTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLF 645

Query: 459 ESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKM---PMEPDAIVWGSLLGACRT 515
           E  K K ++E  +  Y+ ++D  G+ G++++A  I+E++    + P+   W SLL A   
Sbjct: 646 EEAKSK-RIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVK 704

Query: 516 HMKLDLAEVAVEKLAQLE 533
             +++ A V  + + +L+
Sbjct: 705 AEEINEALVCFQSMKELK 722



 Score = 96.7 bits (239), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 161/344 (46%), Gaps = 38/344 (11%)

Query: 22  TGAISRYARIGQIENARKVFDETPHIHRTTSS----WNAMVAAYFQAHQPHQAVTLFETT 77
           T  I  +   G+ E+  K++ +   I++  S      N  +   F+A +P +   +FE  
Sbjct: 486 TSLIKNFFNHGRKEDGHKIYKDM--INQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEI 543

Query: 78  PEKNIV----SWNGMVSGFVKNGMVAEARRVFDAMPVRNVV----SWTSMVRGYVQEGNV 129
             +  V    S++ ++ G +K G   E   +F +M  +  V    ++  ++ G+ + G V
Sbjct: 544 KARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKV 603

Query: 130 EEAERLFWRMPEK----NVVSWTVMLGGLLKDSRVEDARKLFDMMPVK----DVVAVTNM 181
            +A +L   M  K     VV++  ++ GL K  R+++A  LF+    K    +VV  +++
Sbjct: 604 NKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSL 663

Query: 182 IGGYCEEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMPER-- 235
           I G+ + GR++EA  + +E+ ++    N+ TW +++    +   ++ A   F+ M E   
Sbjct: 664 IDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKC 723

Query: 236 --NEVSWTAMLMGYTHSGRMREASEFFDAMP---VKP-VVACNEMIMGFGFDGDVDRAKA 289
             N+V++  ++ G     +  +A  F+  M    +KP  ++   MI G    G++  A A
Sbjct: 724 TPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGA 783

Query: 290 VFEKMRER----DDGTWSAMIKVYERKGFELEALGLFARMQREG 329
           +F++ +      D   ++AMI+        ++A  LF   +R G
Sbjct: 784 LFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRG 827



 Score = 96.3 bits (238), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 125/563 (22%), Positives = 228/563 (40%), Gaps = 80/563 (14%)

Query: 88  MVSGFVKNGMVAEARRVFDAM---PVRNVVS-WTSMVRGYVQEGNVEEAERLFWRMPE-- 141
           MV G VK   + E   V   M     R   S +T+++  +    + +    LF +M E  
Sbjct: 139 MVLGCVKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELG 198

Query: 142 --KNVVSWTVMLGGLLKDSRVEDARKLFDMMPVK----DVVAVTNMIGGYCEEGRLEEAR 195
               V  +T ++ G  K+ RV+ A  L D M       D+V     I  + + G+++ A 
Sbjct: 199 YEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAW 258

Query: 196 ALFDEMP----KRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEV----SWTAMLMGY 247
             F E+     K + VT+T+M+    +  R+D A ++FE + +   V    ++  M+MGY
Sbjct: 259 KFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGY 318

Query: 248 THSGRMREASEFFDAMPVK----PVVACNEMIMGFGFDGDVDRAKAVFEKMRER---DDG 300
             +G+  EA    +    K     V+A N ++      G VD A  VFE+M++    +  
Sbjct: 319 GSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAPNLS 378

Query: 301 TWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARL 360
           T++ +I +  R G    A  L   MQ+ G   N                 D    +   +
Sbjct: 379 TYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEM 438

Query: 361 VRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDV----VMWNSMITGYSQHGLG 416
                  D     +LI    K G +  A  ++ +    D     +++ S+I  +  HG  
Sbjct: 439 DYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRK 498

Query: 417 EEALNVFRDMCLSGVPPDDISFIGVLSACSY-SGKVKEGREIFESMKCK----------- 464
           E+   +++DM      P D+  +     C + +G+ ++GR +FE +K +           
Sbjct: 499 EDGHKIYKDMINQNCSP-DLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSI 557

Query: 465 --------------YQVEPGIEHYACMVDL---------LGRAGQVNDAVEIVEKMP--- 498
                         Y++   ++   C++D            + G+VN A +++E+M    
Sbjct: 558 LIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKG 617

Query: 499 MEPDAIVWGSLLGACRTHMKLD----LAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWE 554
            EP  + +GS++       +LD    L E A  K  +L   N   Y  L   +   GR +
Sbjct: 618 FEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIEL---NVVIYSSLIDGFGKVGRID 674

Query: 555 DVEVVREKIKTRSVIKLPG-YSW 576
           +  ++ E++  + +   P  Y+W
Sbjct: 675 EAYLILEELMQKGLT--PNLYTW 695


>AT1G63230.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:23451144-23452201 FORWARD
           LENGTH=323
          Length = 323

 Score =  108 bits (269), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 129/258 (50%), Gaps = 26/258 (10%)

Query: 25  ISRYARIGQIENARKVFD--ETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEK-- 80
           I+   ++G  E+A  +    E  HI      +NA++    +      A  LF    +K  
Sbjct: 48  INGLCKMGDTESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGI 107

Query: 81  --NIVSWNGMVSGFVKNGMVAEARRVFDAMPVR----NVVSWTSMVRGYVQEGNVEEAER 134
             ++++++GM+  F ++G   +A ++   M  R    +VV++++++   V+EG V EAE 
Sbjct: 108 FPDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEE 167

Query: 135 LFWRMPEKNV----VSWTVMLGGLLKDSRVEDARKLFDMMPVK----DVVAVTNMIGGYC 186
           ++  M  + +    +++  M+ G  K  R+ DA+++ D M  K    DVV  + +I GYC
Sbjct: 168 IYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYC 227

Query: 187 EEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEV 238
           +  R++    +F EM +R    N VT+TT++ G+ +   +D A+ L  VM       N +
Sbjct: 228 KAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYI 287

Query: 239 SWTAMLMGYTHSGRMREA 256
           ++ +ML        +R+A
Sbjct: 288 TFQSMLASLCSKKELRKA 305



 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 126/308 (40%), Gaps = 22/308 (7%)

Query: 174 DVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVVTWTTMVSGYARNRRVDVARKLFEVMP 233
           DVV  T ++ G C EGR+ +A AL D M +     + T+++G  +    + A  L   M 
Sbjct: 9   DVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQPYGTIINGLCKMGDTESALNLLSKME 68

Query: 234 ER----NEVSWTAMLMGYTHSGRMREASEFFDAMPVK----PVVACNEMIMGFGFDGDVD 285
           E     + V + A++      G    A   F  M  K     V+  + MI  F   G   
Sbjct: 69  ETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCRSGRWT 128

Query: 286 RAKAVFEKMRER----DDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXX 341
            A+ +   M ER    D  T+SA+I    ++G   EA  ++  M R G    FP      
Sbjct: 129 DAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGI---FPTTITYN 185

Query: 342 XXXXXXXXXDH---GRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIF----NR 394
                    D     +++   +       D+   S LI  Y K   +     IF     R
Sbjct: 186 SMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRR 245

Query: 395 YPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEG 454
             + + V + ++I G+ Q G  + A ++   M  SGV P+ I+F  +L++     ++++ 
Sbjct: 246 GIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLCSKKELRKA 305

Query: 455 REIFESMK 462
             I E ++
Sbjct: 306 FAILEDLQ 313



 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/295 (21%), Positives = 119/295 (40%), Gaps = 44/295 (14%)

Query: 268 VVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEALGLFARMQR 327
           VV    ++ G   +G V +A A+ ++M E     +  +I    + G    AL L ++M+ 
Sbjct: 10  VVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQPYGTIINGLCKMGDTESALNLLSKMEE 69

Query: 328 EGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVR 387
                                       + A +V         + +A+I    K G  + 
Sbjct: 70  T--------------------------HIKAHVV---------IYNAIIDRLCKDGHHIH 94

Query: 388 AKWIFNRYPLK----DVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLS 443
           A+ +F     K    DV+ ++ MI  + + G   +A  + RDM    + PD ++F  +++
Sbjct: 95  AQNLFTEMHDKGIFPDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALIN 154

Query: 444 ACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPME--- 500
           A    GKV E  EI+  M  +  + P    Y  M+D   +  ++NDA  +++ M  +   
Sbjct: 155 ALVKEGKVSEAEEIYGDM-LRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCS 213

Query: 501 PDAIVWGSLL-GACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWE 554
           PD + + +L+ G C+     +  E+  E   +    N   Y  L H +   G  +
Sbjct: 214 PDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLD 268


>AT1G62680.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23208247-23209893 REVERSE
           LENGTH=548
          Length = 548

 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 103/466 (22%), Positives = 211/466 (45%), Gaps = 45/466 (9%)

Query: 68  HQAVTLF----ETTPEKNIVSWNGMVSGFVK---NGMVAEARRVFDAMPVRN-VVSWTSM 119
           + A+ LF    ++ P  +IV +N ++S  VK     +V    +  + + +RN + ++  +
Sbjct: 67  NDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIV 126

Query: 120 VRGYVQEGNVEEAERLFWRMP----EKNVVSWTVMLGGLLKDSRVEDARKLFDMMP---- 171
           +  +     V  A  +  +M     E + V+   ++ G  + +RV DA  L D M     
Sbjct: 127 INCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGY 186

Query: 172 VKDVVAVTNMIGGYCEEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRR-VDVAR 226
             D+VA   +I   C+  R+ +A   F E+ ++    NVVT+T +V+G   + R  D AR
Sbjct: 187 KPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAAR 246

Query: 227 KLFEVMPER---NEVSWTAMLMGYTHSGRMREASEFFDAM---PVKP-VVACNEMIMGFG 279
            L +++ ++   N ++++A+L  +  +G++ EA E F+ M    + P +V  + +I G  
Sbjct: 247 LLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLC 306

Query: 280 FDGDVDRAKAVFEKMRER----DDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFP 335
               +D A  +F+ M  +    D  +++ +I  + +     + + LF  M + G   N  
Sbjct: 307 LHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTV 366

Query: 336 XXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRY 395
                          D  ++  +++       D++  + L+      G+L +A  IF   
Sbjct: 367 TYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDM 426

Query: 396 PLK----DVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKV 451
             +    D+V + ++I G  + G  EEA ++F  + L G+ PD +++  ++S     G +
Sbjct: 427 QKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLL 486

Query: 452 KEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKM 497
            E   ++  MK     + G+    C +      G +  + E+++KM
Sbjct: 487 HEVEALYTKMK-----QEGLMKNDCTLS----DGDITLSAELIKKM 523


>AT1G05670.2 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:1698574-1700799 REVERSE
           LENGTH=741
          Length = 741

 Score =  107 bits (267), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 107/509 (21%), Positives = 224/509 (44%), Gaps = 40/509 (7%)

Query: 31  IGQIENARKVFDETPH--IHRTTSSWNAMVAAYFQ-AHQPHQAVTLFETTPEK----NIV 83
            G +  AR+VF++  +  +  +  S N  +    +  ++   A+ +F   PE     N+ 
Sbjct: 188 FGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVA 247

Query: 84  SWNGMVSGFVKNGMVAEARRVFDAMPVR----NVVSWTSMVRGYVQEGNVEEAERLFWRM 139
           S+N ++    + G + EA  +   M ++    +V+S++++V GY + G +++  +L   M
Sbjct: 248 SYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVM 307

Query: 140 PEK----NVVSWTVMLGGLLKDSRVEDARKLFDMMP----VKDVVAVTNMIGGYCEEGRL 191
             K    N   +  ++G L +  ++ +A + F  M     + D V  T +I G+C+ G +
Sbjct: 308 KRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDI 367

Query: 192 EEARALFDEMPKRN----VVTWTTMVSGYARNRRVDVARKLFEVM----PERNEVSWTAM 243
             A   F EM  R+    V+T+T ++SG+ +   +  A KLF  M     E + V++T +
Sbjct: 368 RAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTEL 427

Query: 244 LMGYTHSGRMREASEFFDAM---PVKP-VVACNEMIMGFGFDGDVDRAKAVFEKM----R 295
           + GY  +G M++A    + M      P VV    +I G   +GD+D A  +  +M     
Sbjct: 428 INGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGL 487

Query: 296 ERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQ 355
           + +  T+++++    + G   EA+ L    +  G   +                 D  ++
Sbjct: 488 QPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQE 547

Query: 356 VHARLVRSEFDQDLYVASALITMYVKCGDLVRAK----WIFNRYPLKDVVMWNSMITGYS 411
           +   ++       +   + L+  +   G L   +    W+  +    +   +NS++  Y 
Sbjct: 548 ILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYC 607

Query: 412 QHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGI 471
                + A  +++DMC  GV PD  ++  ++     +  +KE   +F+ MK K      +
Sbjct: 608 IRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGK-GFSVSV 666

Query: 472 EHYACMVDLLGRAGQVNDAVEIVEKMPME 500
             Y+ ++    +  +  +A E+ ++M  E
Sbjct: 667 STYSVLIKGFLKRKKFLEAREVFDQMRRE 695



 Score = 93.2 bits (230), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 166/344 (48%), Gaps = 34/344 (9%)

Query: 22  TGAISRYARIGQIENARKVFDE--TPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETT-- 77
           T  I  + + G I  A K F E  +  I     ++ A+++ + Q     +A  LF     
Sbjct: 355 TTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFC 414

Query: 78  --PEKNIVSWNGMVSGFVKNGMVAEARRVFDAM----PVRNVVSWTSMVRGYVQEGNVEE 131
              E + V++  +++G+ K G + +A RV + M       NVV++T+++ G  +EG+++ 
Sbjct: 415 KGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDS 474

Query: 132 AERLF---WRMP-EKNVVSWTVMLGGLLKDSRVEDARKL---FDMMPVK-DVVAVTNMIG 183
           A  L    W++  + N+ ++  ++ GL K   +E+A KL   F+   +  D V  T ++ 
Sbjct: 475 ANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMD 534

Query: 184 GYCEEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMPER---- 235
            YC+ G +++A+ +  EM  +     +VT+  +++G+  +  ++   KL   M  +    
Sbjct: 535 AYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAP 594

Query: 236 NEVSWTAMLMGYTHSGRMREASEFFDAMPVKPV----VACNEMIMGFGFDGDVDRAKAVF 291
           N  ++ +++  Y     ++ A+  +  M  + V         ++ G     ++  A  +F
Sbjct: 595 NATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLF 654

Query: 292 EKMRER----DDGTWSAMIKVYERKGFELEALGLFARMQREGAA 331
           ++M+ +       T+S +IK + ++   LEA  +F +M+REG A
Sbjct: 655 QEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLA 698



 Score = 73.9 bits (180), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 103/491 (20%), Positives = 198/491 (40%), Gaps = 94/491 (19%)

Query: 112 NVVSWTSMVRGYVQEGNVEEAERL---FWRMPEKNVVSWTVMLGGLL--------KDSRV 160
           N+ S   ++   V   +++ A+ L   FW  P+ NV    V    LL         D RV
Sbjct: 118 NLESLCIVIHLAVASKDLKVAQSLISSFWERPKLNVTDSFVQFFDLLVYTYKDWGSDPRV 177

Query: 161 EDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVV-------TWTTMV 213
            D    F ++                + G L EAR +F++M    +V        + T +
Sbjct: 178 FDV--FFQVL---------------VDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRL 220

Query: 214 SG--YARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVK----P 267
           S   Y     + V R+  EV    N  S+  ++      GR++EA      M +K     
Sbjct: 221 SKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPD 280

Query: 268 VVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEA------LGL 321
           V++ + ++ G+   G++D+               W  +I+V +RKG +  +      +GL
Sbjct: 281 VISYSTVVNGYCRFGELDKV--------------WK-LIEVMKRKGLKPNSYIYGSIIGL 325

Query: 322 FARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVK 381
             R+ +   A                       +  + ++R     D  V + LI  + K
Sbjct: 326 LCRICKLAEA----------------------EEAFSEMIRQGILPDTVVYTTLIDGFCK 363

Query: 382 CGDLVRAKWIF----NRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDIS 437
            GD+  A   F    +R    DV+ + ++I+G+ Q G   EA  +F +M   G+ PD ++
Sbjct: 364 RGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVT 423

Query: 438 FIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVE-- 495
           F  +++    +G +K+   +   M  +    P +  Y  ++D L + G ++ A E++   
Sbjct: 424 FTELINGYCKAGHMKDAFRVHNHM-IQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEM 482

Query: 496 -KMPMEPDAIVWGSLL-GACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRW 553
            K+ ++P+   + S++ G C++    +  ++  E  A     +   Y  L   Y   G  
Sbjct: 483 WKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEM 542

Query: 554 EDV-EVVREKI 563
           +   E+++E +
Sbjct: 543 DKAQEILKEML 553


>AT1G05670.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:1698574-1700799 REVERSE
           LENGTH=741
          Length = 741

 Score =  107 bits (267), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 107/509 (21%), Positives = 224/509 (44%), Gaps = 40/509 (7%)

Query: 31  IGQIENARKVFDETPH--IHRTTSSWNAMVAAYFQ-AHQPHQAVTLFETTPEK----NIV 83
            G +  AR+VF++  +  +  +  S N  +    +  ++   A+ +F   PE     N+ 
Sbjct: 188 FGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVA 247

Query: 84  SWNGMVSGFVKNGMVAEARRVFDAMPVR----NVVSWTSMVRGYVQEGNVEEAERLFWRM 139
           S+N ++    + G + EA  +   M ++    +V+S++++V GY + G +++  +L   M
Sbjct: 248 SYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVM 307

Query: 140 PEK----NVVSWTVMLGGLLKDSRVEDARKLFDMMP----VKDVVAVTNMIGGYCEEGRL 191
             K    N   +  ++G L +  ++ +A + F  M     + D V  T +I G+C+ G +
Sbjct: 308 KRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDI 367

Query: 192 EEARALFDEMPKRN----VVTWTTMVSGYARNRRVDVARKLFEVM----PERNEVSWTAM 243
             A   F EM  R+    V+T+T ++SG+ +   +  A KLF  M     E + V++T +
Sbjct: 368 RAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTEL 427

Query: 244 LMGYTHSGRMREASEFFDAM---PVKP-VVACNEMIMGFGFDGDVDRAKAVFEKM----R 295
           + GY  +G M++A    + M      P VV    +I G   +GD+D A  +  +M     
Sbjct: 428 INGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGL 487

Query: 296 ERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQ 355
           + +  T+++++    + G   EA+ L    +  G   +                 D  ++
Sbjct: 488 QPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQE 547

Query: 356 VHARLVRSEFDQDLYVASALITMYVKCGDLVRAK----WIFNRYPLKDVVMWNSMITGYS 411
           +   ++       +   + L+  +   G L   +    W+  +    +   +NS++  Y 
Sbjct: 548 ILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYC 607

Query: 412 QHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGI 471
                + A  +++DMC  GV PD  ++  ++     +  +KE   +F+ MK K      +
Sbjct: 608 IRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGK-GFSVSV 666

Query: 472 EHYACMVDLLGRAGQVNDAVEIVEKMPME 500
             Y+ ++    +  +  +A E+ ++M  E
Sbjct: 667 STYSVLIKGFLKRKKFLEAREVFDQMRRE 695



 Score = 93.2 bits (230), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 166/344 (48%), Gaps = 34/344 (9%)

Query: 22  TGAISRYARIGQIENARKVFDE--TPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETT-- 77
           T  I  + + G I  A K F E  +  I     ++ A+++ + Q     +A  LF     
Sbjct: 355 TTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFC 414

Query: 78  --PEKNIVSWNGMVSGFVKNGMVAEARRVFDAM----PVRNVVSWTSMVRGYVQEGNVEE 131
              E + V++  +++G+ K G + +A RV + M       NVV++T+++ G  +EG+++ 
Sbjct: 415 KGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDS 474

Query: 132 AERLF---WRMP-EKNVVSWTVMLGGLLKDSRVEDARKL---FDMMPVK-DVVAVTNMIG 183
           A  L    W++  + N+ ++  ++ GL K   +E+A KL   F+   +  D V  T ++ 
Sbjct: 475 ANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMD 534

Query: 184 GYCEEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMPER---- 235
            YC+ G +++A+ +  EM  +     +VT+  +++G+  +  ++   KL   M  +    
Sbjct: 535 AYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAP 594

Query: 236 NEVSWTAMLMGYTHSGRMREASEFFDAMPVKPV----VACNEMIMGFGFDGDVDRAKAVF 291
           N  ++ +++  Y     ++ A+  +  M  + V         ++ G     ++  A  +F
Sbjct: 595 NATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLF 654

Query: 292 EKMRER----DDGTWSAMIKVYERKGFELEALGLFARMQREGAA 331
           ++M+ +       T+S +IK + ++   LEA  +F +M+REG A
Sbjct: 655 QEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLA 698



 Score = 73.9 bits (180), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 103/491 (20%), Positives = 198/491 (40%), Gaps = 94/491 (19%)

Query: 112 NVVSWTSMVRGYVQEGNVEEAERL---FWRMPEKNVVSWTVMLGGLL--------KDSRV 160
           N+ S   ++   V   +++ A+ L   FW  P+ NV    V    LL         D RV
Sbjct: 118 NLESLCIVIHLAVASKDLKVAQSLISSFWERPKLNVTDSFVQFFDLLVYTYKDWGSDPRV 177

Query: 161 EDARKLFDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVV-------TWTTMV 213
            D    F ++                + G L EAR +F++M    +V        + T +
Sbjct: 178 FDV--FFQVL---------------VDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRL 220

Query: 214 SG--YARNRRVDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVK----P 267
           S   Y     + V R+  EV    N  S+  ++      GR++EA      M +K     
Sbjct: 221 SKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPD 280

Query: 268 VVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTWSAMIKVYERKGFELEA------LGL 321
           V++ + ++ G+   G++D+               W  +I+V +RKG +  +      +GL
Sbjct: 281 VISYSTVVNGYCRFGELDKV--------------WK-LIEVMKRKGLKPNSYIYGSIIGL 325

Query: 322 FARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVK 381
             R+ +   A                       +  + ++R     D  V + LI  + K
Sbjct: 326 LCRICKLAEA----------------------EEAFSEMIRQGILPDTVVYTTLIDGFCK 363

Query: 382 CGDLVRAKWIF----NRYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDIS 437
            GD+  A   F    +R    DV+ + ++I+G+ Q G   EA  +F +M   G+ PD ++
Sbjct: 364 RGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVT 423

Query: 438 FIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVE-- 495
           F  +++    +G +K+   +   M  +    P +  Y  ++D L + G ++ A E++   
Sbjct: 424 FTELINGYCKAGHMKDAFRVHNHM-IQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEM 482

Query: 496 -KMPMEPDAIVWGSLL-GACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRW 553
            K+ ++P+   + S++ G C++    +  ++  E  A     +   Y  L   Y   G  
Sbjct: 483 WKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEM 542

Query: 554 EDV-EVVREKI 563
           +   E+++E +
Sbjct: 543 DKAQEILKEML 553


>AT2G16880.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:7312262-7314493 REVERSE
           LENGTH=743
          Length = 743

 Score =  107 bits (267), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 122/545 (22%), Positives = 235/545 (43%), Gaps = 57/545 (10%)

Query: 45  PHIHRTTSSWNAM----VAAYFQAHQPHQAVTLFET----TPEKNIVSWNGMVSGFVK-- 94
           P++H +     A+    ++AY    +PH A+ +F+       + N+++ N ++ G V+  
Sbjct: 121 PNLHLSPPPSKALFDIALSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVRYP 180

Query: 95  -NGMVAEARRVFDAMP----VRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEK-----NV 144
            +  ++ AR VFD M       NV ++  +V GY  EG +E+A  +  RM  +     + 
Sbjct: 181 SSFSISSAREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDN 240

Query: 145 VSWTVMLGGLLKDSRVEDARKLF-DMMP---VKDVVAVTNMIGGYCEEGRLEEARALFDE 200
           V++  +L  + K  R+ D ++L  DM     V + V   N++ GYC+ G L+EA  + + 
Sbjct: 241 VTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVEL 300

Query: 201 MPKRNVV----TWTTMVSGYARNRRVDVARKLFEVMP----ERNEVSWTAMLMGYTHSGR 252
           M + NV+    T+  +++G      +    +L + M     + + V++  ++ G    G 
Sbjct: 301 MKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGL 360

Query: 253 MREASEFFDAMPVKPVVACNEMIMGFGFD--GDVDRAKAVFEKMRERDDG--------TW 302
             EA +  + M    V A N++            ++ +AV  K++E  D         T+
Sbjct: 361 SLEARKLMEQMENDGVKA-NQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTY 419

Query: 303 SAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVR 362
             +IK Y + G    AL +   M ++G  +N                 D    +     +
Sbjct: 420 HTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHK 479

Query: 363 SEFDQDLYVASALITMYVKCGDLVRAKWIFNRYP----LKDVVMWNSMITGYSQHGLGEE 418
             F  D      LI  + +   + +A  +++          V  +NS+I G   HG  E 
Sbjct: 480 RGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTEL 539

Query: 419 ALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMV 478
           A+  F ++  SG+ PDD +F  ++      G+V++  E +     K+  +P  ++Y C +
Sbjct: 540 AMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNE-SIKHSFKP--DNYTCNI 596

Query: 479 DLLG--RAGQVNDAVEIVEKM--PMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQLEP 534
            L G  + G    A+     +    E D + + +++ A     KL   + A + L+++E 
Sbjct: 597 LLNGLCKEGMTEKALNFFNTLIEEREVDTVTYNTMISAFCKDKKL---KEAYDLLSEMEE 653

Query: 535 KNAGP 539
           K   P
Sbjct: 654 KGLEP 658



 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 105/459 (22%), Positives = 195/459 (42%), Gaps = 78/459 (16%)

Query: 53  SWNAMVAAYFQAHQPHQAVTLFETTPEKNIV----SWNGMVSGFVKNGMVAEARRVFDAM 108
           ++N +V  Y +     +A  + E   + N++    ++N +++G    G + E   + DAM
Sbjct: 277 TYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAM 336

Query: 109 PVR----NVVSWTSMVRGYVQEGNVEEAERLFWRMP----EKNVVSWTVMLGGLLKDSRV 160
                  +VV++ +++ G  + G   EA +L  +M     + N V+  + L  L K+ + 
Sbjct: 337 KSLKLQPDVVTYNTLIDGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKR 396

Query: 161 E----DARKLFDMMPVK-DVVAVTNMIGGYCEEGRLEEARALFDEMPKR----NVVTWTT 211
           E      ++L DM     D+V    +I  Y + G L  A  +  EM ++    N +T  T
Sbjct: 397 EAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNT 456

Query: 212 MVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAMP--- 264
           ++    + R++D A  L     +R    +EV++  ++MG+    ++ +A E +D M    
Sbjct: 457 ILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVK 516

Query: 265 VKPVVAC-NEMIMGFGFDGDVDRAKAVFEKMRER----DDGTWSAMIKVYERKGFELEAL 319
           + P V+  N +I G    G  + A   F+++ E     DD T++++I  Y ++G      
Sbjct: 517 ITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEG------ 570

Query: 320 GLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMY 379
                  R   A  F                      +   ++  F  D Y  + L+   
Sbjct: 571 -------RVEKAFEF----------------------YNESIKHSFKPDNYTCNILLNGL 601

Query: 380 VKCGDLVRAKWIFNRYPLK---DVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDI 436
            K G   +A   FN    +   D V +N+MI+ + +    +EA ++  +M   G+ PD  
Sbjct: 602 CKEGMTEKALNFFNTLIEEREVDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRF 661

Query: 437 SFIGVLSACSYSGKVKEGREI-------FESMKCKYQVE 468
           ++   +S     GK+ E  E+       F SMK   QVE
Sbjct: 662 TYNSFISLLMEDGKLSETDELLKKFSGKFGSMKRDLQVE 700


>AT4G28010.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:13930379-13932493 FORWARD
           LENGTH=704
          Length = 704

 Score =  107 bits (266), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 114/519 (21%), Positives = 228/519 (43%), Gaps = 52/519 (10%)

Query: 38  RKVFDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTPEK----NIVSWNGMVSGFV 93
           RK+ +    I+    S + ++  Y Q  +   A  +     ++    N+ + N ++ G  
Sbjct: 96  RKMLETDTFINFV--SLSGLLECYVQMRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLC 153

Query: 94  KN-------GMVAEARRVFDAMPVRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEK---- 142
           +N        ++ E RR    MP  +V S+ +++RG+ +   +E+A  L   M       
Sbjct: 154 RNLECGKAVSLLREMRRN-SLMP--DVFSYNTVIRGFCEGKELEKALELANEMKGSGCSW 210

Query: 143 NVVSWTVMLGGLLKDSRVEDARKLFDMMPV----KDVVAVTNMIGGYCEEGRLEEARALF 198
           ++V+W +++    K  ++++A      M       D+V  T++I G+C+ G L+  +ALF
Sbjct: 211 SLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALF 270

Query: 199 DEMPKRN----VVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHS 250
           DE+ +R      +T+ T++ G+ +  ++  A ++FE M ER    N  ++T ++ G    
Sbjct: 271 DEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGV 330

Query: 251 GRMREASEFFDAMPVKP----VVACNEMIMGFGFDGDVDRAKAVFEKMRER----DDGTW 302
           G+ +EA +  + M  K      V  N +I     DG V  A  + E M++R    D+ T+
Sbjct: 331 GKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITY 390

Query: 303 SAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQ---VHAR 359
           + ++     KG   EA  L   M ++ +  + P               +   Q   ++  
Sbjct: 391 NILLGGLCAKGDLDEASKLLYLMLKDSSYTD-PDVISYNALIHGLCKENRLHQALDIYDL 449

Query: 360 LVRSEFDQDLYVASALITMYVKCGDLVRA----KWIFNRYPLKDVVMWNSMITGYSQHGL 415
           LV      D    + L+   +K GD+ +A    K I +   +++   + +MI G+ + G+
Sbjct: 450 LVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGM 509

Query: 416 GEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYA 475
              A  +   M +S + P    +  +LS+    G + +   +FE M+ +    P +  + 
Sbjct: 510 LNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQ-RDNNFPDVVSFN 568

Query: 476 CMVDLLGRAGQVNDAVEIVEKMP---MEPDAIVWGSLLG 511
            M+D   +AG +  A  ++  M    + PD   +  L+ 
Sbjct: 569 IMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLIN 607



 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/447 (21%), Positives = 201/447 (44%), Gaps = 38/447 (8%)

Query: 53  SWNAMVAAYFQAHQPHQAVTLFETTP----EKNIVSWNGMVSGFVKNGMVAEARRVFDAM 108
           +W  ++ A+ +A +  +A+   +       E ++V +  ++ GF   G +   + +FD +
Sbjct: 214 TWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEV 273

Query: 109 PVRN----VVSWTSMVRGYVQEGNVEEAERLFWRMPEK----NVVSWTVMLGGLLKDSRV 160
             R      +++ +++RG+ + G ++EA  +F  M E+    NV ++T ++ GL    + 
Sbjct: 274 LERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKT 333

Query: 161 EDARKLFDMMPVKD----VVAVTNMIGGYCEEGRLEEARALFDEMPKRNV----VTWTTM 212
           ++A +L ++M  KD     V    +I   C++G + +A  + + M KR      +T+  +
Sbjct: 334 KEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNIL 393

Query: 213 VSGYARNRRVDVARKLFEVMPERNE------VSWTAMLMGYTHSGRMREASEFFDAMPVK 266
           + G      +D A KL  +M + +       +S+ A++ G     R+ +A + +D +  K
Sbjct: 394 LGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEK 453

Query: 267 ----PVVACNEMIMGFGFDGDVDRAKAVFEKMRE----RDDGTWSAMIKVYERKGFELEA 318
                 V  N ++      GDV++A  +++++ +    R+  T++AMI  + + G    A
Sbjct: 454 LGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVA 513

Query: 319 LGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITM 378
            GL  +M+      +                 D   ++   + R     D+   + +I  
Sbjct: 514 KGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDG 573

Query: 379 YVKCGDLVRAKWIF---NRYPLK-DVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPD 434
            +K GD+  A+ +    +R  L  D+  ++ +I  + + G  +EA++ F  M  SG  PD
Sbjct: 574 SLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPD 633

Query: 435 DISFIGVLSACSYSGKVKEGREIFESM 461
                 VL  C   G+  +  E+ + +
Sbjct: 634 AHICDSVLKYCISQGETDKLTELVKKL 660



 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 138/337 (40%), Gaps = 55/337 (16%)

Query: 205 NVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFF 260
           N V+ + ++  Y + R+   A  +  +M +R    N  +   +L G   +    +A    
Sbjct: 106 NFVSLSGLLECYVQMRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLL 165

Query: 261 DAM---PVKP-VVACNEMIMGFGFDGDVDRAKAVFEKMRERDDG----TWSAMIKVYERK 312
             M    + P V + N +I GF    ++++A  +  +M+         TW  +I  + + 
Sbjct: 166 REMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKA 225

Query: 313 GFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVA 372
           G   EA+G    M+  G                                    + DL V 
Sbjct: 226 GKMDEAMGFLKEMKFMG-----------------------------------LEADLVVY 250

Query: 373 SALITMYVKCGDLVRAKWIFN----RYPLKDVVMWNSMITGYSQHGLGEEALNVFRDMCL 428
           ++LI  +  CG+L R K +F+    R      + +N++I G+ + G  +EA  +F  M  
Sbjct: 251 TSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIE 310

Query: 429 SGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVN 488
            GV P+  ++ G++      GK KE  ++   M  K + EP    Y  +++ L + G V 
Sbjct: 311 RGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDE-EPNAVTYNIIINKLCKDGLVA 369

Query: 489 DAVEIVEKMP---MEPDAIVWGSLLGACRTHMKLDLA 522
           DAVEIVE M      PD I +  LLG       LD A
Sbjct: 370 DAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEA 406


>AT1G12700.1 | Symbols:  | ATP binding;nucleic acid
           binding;helicases | chr1:4323722-4326227 REVERSE
           LENGTH=735
          Length = 735

 Score =  106 bits (264), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 98/426 (23%), Positives = 185/426 (43%), Gaps = 35/426 (8%)

Query: 79  EKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVRN-----VVSWTSMVRGYVQEGNVEEAE 133
           E +  ++N ++ G    G V+EA  + D M V N     VV++ S+V G  + G+   A 
Sbjct: 155 EPDTTTFNTLIKGLFLEGKVSEAVVLVDRM-VENGCQPDVVTYNSIVNGICRSGDTSLAL 213

Query: 134 RLFWRMPEKNV----VSWTVMLGGLLKDSRVEDARKLFDMMPVK----DVVAVTNMIGGY 185
            L  +M E+NV     +++ ++  L +D  ++ A  LF  M  K     VV   +++ G 
Sbjct: 214 DLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGL 273

Query: 186 CEEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMPER----NE 237
           C+ G+  +   L  +M  R    NV+T+  ++  + +  ++  A +L++ M  R    N 
Sbjct: 274 CKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNI 333

Query: 238 VSWTAMLMGYTHSGRMREASEFFDAM---PVKP-VVACNEMIMGFGFDGDVDRAKAVFEK 293
           +++  ++ GY    R+ EA+   D M      P +V    +I G+     VD    VF  
Sbjct: 334 ITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRN 393

Query: 294 MRER----DDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXX 349
           + +R    +  T+S +++ + + G    A  LF  M   G   +                
Sbjct: 394 ISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGK 453

Query: 350 XDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLK----DVVMWNS 405
            +   ++   L +S+ D  + + + +I    K G +  A  +F   P K    +V+ +  
Sbjct: 454 LEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTV 513

Query: 406 MITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMK-CK 464
           MI+G  + G   EA  + R M   G  P+D ++  ++ A    G +    ++ E MK C 
Sbjct: 514 MISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCG 573

Query: 465 YQVEPG 470
           +  +  
Sbjct: 574 FSADAS 579



 Score = 92.4 bits (228), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 100/475 (21%), Positives = 203/475 (42%), Gaps = 78/475 (16%)

Query: 81  NIVSWNGMVSGFVKNGMVAEARRVFDAM------PVRNVVSWTSMVRGYVQEGNVEEAER 134
           NI + N M++ F +      A  V   +      P  +  ++ ++++G   EG V EA  
Sbjct: 122 NIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEP--DTTTFNTLIKGLFLEGKVSEAVV 179

Query: 135 LFWRMPEK----NVVSWTVMLGGLLKDSRVEDARKLFDMMPVK----DVVAVTNMIGGYC 186
           L  RM E     +VV++  ++ G+ +      A  L   M  +    DV   + +I   C
Sbjct: 180 LVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLC 239

Query: 187 EEGRLEEARALFDEMP----KRNVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEV 238
            +G ++ A +LF EM     K +VVT+ ++V G  +  + +    L + M  R    N +
Sbjct: 240 RDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVI 299

Query: 239 SWTAMLMGYTHSGRMREASEFFDAMPVK----PVVACNEMIMGFGFDGDVDRAKAVFEKM 294
           ++  +L  +   G+++EA+E +  M  +     ++  N ++ G+     +  A  + + M
Sbjct: 300 TFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLM 359

Query: 295 -RER---DDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXX 350
            R +   D  T++++IK Y               ++R                       
Sbjct: 360 VRNKCSPDIVTFTSLIKGY-------------CMVKR----------------------V 384

Query: 351 DHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYP----LKDVVMWNSM 406
           D G +V   + +     +    S L+  + + G +  A+ +F        L DV+ +  +
Sbjct: 385 DDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGIL 444

Query: 407 ITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQ 466
           + G   +G  E+AL +F D+  S +    + +  ++      GKV++   +F S+ CK  
Sbjct: 445 LDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCK-G 503

Query: 467 VEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPME---PDAIVWGSLLGACRTHMK 518
           V+P +  Y  M+  L + G +++A  ++ KM  +   P+   + +L+   R H++
Sbjct: 504 VKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLI---RAHLR 555



 Score = 90.5 bits (223), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 139/293 (47%), Gaps = 38/293 (12%)

Query: 28  YARIGQIENARKVFDE--TPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFE----TTPEKN 81
           + + G+++ A +++ E  T  I     ++N ++  Y   ++  +A  + +         +
Sbjct: 308 FVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPD 367

Query: 82  IVSWNGMVSGFVKNGMVAEARRVFDAMPVR----NVVSWTSMVRGYVQEGNVEEAERLFW 137
           IV++  ++ G+     V +  +VF  +  R    N V+++ +V+G+ Q G ++ AE LF 
Sbjct: 368 IVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQ 427

Query: 138 RMPEK----NVVSWTVMLGGLLKDSRVEDARKLF-DMMPVK---DVVAVTNMIGGYCEEG 189
            M       +V+++ ++L GL  + ++E A ++F D+   K    +V  T +I G C+ G
Sbjct: 428 EMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGG 487

Query: 190 RLEEARALFDEMP----KRNVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWT 241
           ++E+A  LF  +P    K NV+T+T M+SG  +   +  A  L   M E     N+ ++ 
Sbjct: 488 KVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYN 547

Query: 242 AMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAVFEKM 294
            ++  +   G +  +++  + M      +C       GF  D    K V + +
Sbjct: 548 TLIRAHLRDGDLTASAKLIEEMK-----SC-------GFSADASSIKMVIDML 588


>AT1G64580.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23985078-23986649 REVERSE
           LENGTH=523
          Length = 523

 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 149/308 (48%), Gaps = 32/308 (10%)

Query: 54  WNAMVAAYFQAHQPHQAVTLFETTPEKNI----VSWNGMVSGFVKNGMVAEARRVFDAMP 109
           +N ++    +    + A+ +F    +K I    V++N ++SG   +G   +A R+   M 
Sbjct: 187 YNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMV 246

Query: 110 VR----NVVSWTSMVRGYVQEGNVEEAERLFWRMPEK----NVVSWTVMLGGLLKDSRVE 161
            R    NV+ +T+++  +V+EGN+ EA  L+  M  +    NV ++  ++ G      + 
Sbjct: 247 KRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLG 306

Query: 162 DARKLFDMMPVK----DVVAVTNMIGGYCEEGRLEEARALFDEMPKRNVV----TWTTMV 213
           DA+ +FD+M  K    DVV    +I G+C+  R+E+   LF EM  + +V    T+ T++
Sbjct: 307 DAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLI 366

Query: 214 SGYARNRRVDVARKLFEVMPE----RNEVSWTAMLMGYTHSGRMREASEFFDAMPVK--- 266
            GY +  +++VA+K+F  M +     + V++  +L    ++G++ +A    + +      
Sbjct: 367 HGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMD 426

Query: 267 -PVVACNEMIMGFGFDGDVDRAKAVFEKMRER----DDGTWSAMIKVYERKGFELEALGL 321
             ++  N +I G      +  A  +F  +  +    D   +  MI    RKG + EA  L
Sbjct: 427 VDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKL 486

Query: 322 FARMQREG 329
             RM+ +G
Sbjct: 487 CRRMKEDG 494



 Score = 88.2 bits (217), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 150/344 (43%), Gaps = 24/344 (6%)

Query: 143 NVVSWTVMLGGLLKDSRVEDARKLFDMMP----VKDVVAVTNMIGGYCEEGRLEEARALF 198
           ++V+   +L G  + +R ++A  L D M     V +VV    +I G C+   L  A  +F
Sbjct: 148 SIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVF 207

Query: 199 DEMPKRNV----VTWTTMVSGYARNRR-VDVARKLFEVMPER---NEVSWTAMLMGYTHS 250
             M K+ +    VT+ T++SG + + R  D AR L +++  +   N + +TA++  +   
Sbjct: 208 YCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKE 267

Query: 251 GRMREASEFFDAMPVKPVV----ACNEMIMGFGFDGDVDRAKAVFEKMRER----DDGTW 302
           G + EA   +  M  + VV      N +I GF   G +  AK +F+ M  +    D  T+
Sbjct: 268 GNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTY 327

Query: 303 SAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVR 362
           + +I  + +     + + LF  M  +G   +                 +  ++V  R+V 
Sbjct: 328 NTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVD 387

Query: 363 SEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLK----DVVMWNSMITGYSQHGLGEE 418
                D+   + L+      G + +A  +           D++ +N +I G  +    +E
Sbjct: 388 CGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKE 447

Query: 419 ALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMK 462
           A  +FR +   GV PD I++I ++S     G  +E  ++   MK
Sbjct: 448 AWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMK 491



 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 78/174 (44%), Gaps = 9/174 (5%)

Query: 399 DVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIF 458
           D V +N++I+G S  G   +A  + RDM    + P+ I F  ++      G + E R ++
Sbjct: 218 DAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLY 277

Query: 459 ESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPME---PDAIVWGSLL-GACR 514
           + M  +  V P +  Y  +++     G + DA  + + M  +   PD + + +L+ G C+
Sbjct: 278 KEM-IRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCK 336

Query: 515 THMKLDLAEVAVEKLAQLEPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSV 568
           +    D  ++  E   Q    +A  Y  L H Y   G+      V +K+  R V
Sbjct: 337 SKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLN----VAQKVFNRMV 386


>AT1G12620.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:4294883-4296748 REVERSE
           LENGTH=621
          Length = 621

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 98/455 (21%), Positives = 203/455 (44%), Gaps = 37/455 (8%)

Query: 51  TSSWNAMVAAYFQAHQPHQAVTLFETTPE----KNIVSWNGMVSGFVKNGMVAEARRVFD 106
           T +++ ++       +  +A+ L +   E      +++ N +V+G   NG V++A  + D
Sbjct: 142 TVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLID 201

Query: 107 AMPVR----NVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNV----VSWTVMLGGLLKDS 158
            M       N V++  +++   + G    A  L  +M E+ +    V +++++ GL KD 
Sbjct: 202 RMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDG 261

Query: 159 RVEDARKLFDMMPVK----DVVAVTNMIGGYCEEGRLEEARALFDEMPKR----NVVTWT 210
            +++A  LF+ M +K    D++  T +I G+C  GR ++   L  +M KR    +VV ++
Sbjct: 262 SLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFS 321

Query: 211 TMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAMPVK 266
            ++  + +  ++  A +L + M +R    + V++T+++ G+    ++ +A+   D M  K
Sbjct: 322 ALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSK 381

Query: 267 ----PVVACNEMIMGFGFDGDVDRAKAVFEKMRER----DDGTWSAMIKVYERKGFELEA 318
                +   N +I G+     +D    +F KM  R    D  T++ +I+ +   G    A
Sbjct: 382 GCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVA 441

Query: 319 LGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITM 378
             LF  M       +                 +   ++  ++ +S+ + D+ + + +I  
Sbjct: 442 KELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHG 501

Query: 379 YVKCGDLVRAKWIFNRYPLK----DVVMWNSMITGYSQHGLGEEALNVFRDMCLSGVPPD 434
                 +  A  +F   PLK    DV  +N MI G  + G   EA  +FR M   G  P+
Sbjct: 502 MCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPN 561

Query: 435 DISFIGVLSACSYSGKVKEGREIFESMK-CKYQVE 468
             ++  ++ A    G   +  ++ E +K C + V+
Sbjct: 562 GCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVD 596



 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 101/455 (22%), Positives = 196/455 (43%), Gaps = 41/455 (9%)

Query: 79  EKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVR----NVVSWTSMVRGYVQEGNVEEAER 134
           E + V+++ +++G    G V+EA  + D M        +++  ++V G    G V +A  
Sbjct: 139 EPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVL 198

Query: 135 LFWRMPEK----NVVSWTVMLGGLLKDSRVEDARKLFDMMPVK----DVVAVTNMIGGYC 186
           L  RM E     N V++  +L  + K  +   A +L   M  +    D V  + +I G C
Sbjct: 199 LIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLC 258

Query: 187 EEGRLEEARALFDEMP----KRNVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEV 238
           ++G L+ A  LF+EM     K +++ +TT++ G+    R D   KL   M +R    + V
Sbjct: 259 KDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVV 318

Query: 239 SWTAMLMGYTHSGRMREASEFFDAMPVKPV----VACNEMIMGFGFDGDVDRAKAVFEKM 294
           +++A++  +   G++REA E    M  + +    V    +I GF  +  +D+A  + + M
Sbjct: 319 AFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLM 378

Query: 295 RERDDG----TWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXX 350
             +  G    T++ +I  Y +     + L LF +M   G   +                 
Sbjct: 379 VSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKL 438

Query: 351 DHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLK----DVVMWNSM 406
           +  +++   +V      D+     L+      G+  +A  IF +        D+ ++N +
Sbjct: 439 EVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNII 498

Query: 407 ITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQ 466
           I G       ++A ++F  + L GV PD  ++  ++      G + E   +F  M+    
Sbjct: 499 IHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKME---- 554

Query: 467 VEPGIEHYACMVDLLGRA----GQVNDAVEIVEKM 497
            E G     C  ++L RA    G    + +++E++
Sbjct: 555 -EDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEI 588



 Score = 95.9 bits (237), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 90/403 (22%), Positives = 175/403 (43%), Gaps = 68/403 (16%)

Query: 141 EKNVVSWTVMLGGLLKDSRVEDARKLFDMM------PVKDVVAVTNMIGGYCEEGRLEEA 194
           E + V+++ ++ GL  + RV +A +L D M      P   ++ +  ++ G C  G++ +A
Sbjct: 139 EPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPT--LITLNALVNGLCLNGKVSDA 196

Query: 195 RALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMG 246
             L D M +     N VT+  ++    ++ +  +A +L   M ER    + V ++ ++ G
Sbjct: 197 VLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDG 256

Query: 247 YTHSGRMREASEFFDAMPVK----PVVACNEMIMGFGFDGDVDRAKAVFEKMRER----D 298
               G +  A   F+ M +K     ++    +I GF + G  D    +   M +R    D
Sbjct: 257 LCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPD 316

Query: 299 DGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHA 358
              +SA+I  + ++G   EA                                    ++H 
Sbjct: 317 VVAFSALIDCFVKEGKLREA-----------------------------------EELHK 341

Query: 359 RLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLK----DVVMWNSMITGYSQHG 414
            +++     D    ++LI  + K   L +A  + +    K    ++  +N +I GY +  
Sbjct: 342 EMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKAN 401

Query: 415 LGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHY 474
           L ++ L +FR M L GV  D +++  ++      GK++  +E+F+ M  + +V P I  Y
Sbjct: 402 LIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSR-RVRPDIVSY 460

Query: 475 ACMVDLLGRAGQVNDAVEI---VEKMPMEPDAIVWGSLL-GAC 513
             ++D L   G+   A+EI   +EK  ME D  ++  ++ G C
Sbjct: 461 KILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMC 503


>AT1G19290.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:6666249-6668963 FORWARD
           LENGTH=904
          Length = 904

 Score =  104 bits (259), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/299 (27%), Positives = 149/299 (49%), Gaps = 37/299 (12%)

Query: 41  FDETPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTP-----EKNIVSWNGMVSGFVKN 95
           F+ +P +     + + +V AY ++    +A+   + T      E N+V++N +++G+   
Sbjct: 219 FEVSPDVF----TCSIVVNAYCRSGNVDKAMVFAKETESSLGLELNVVTYNSLINGYAMI 274

Query: 96  GMVAEARRVFDAMP----VRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVS----W 147
           G V    RV   M      RNVV++TS+++GY ++G +EEAE +F  + EK +V+    +
Sbjct: 275 GDVEGMTRVLRLMSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKKLVADQHMY 334

Query: 148 TVMLGGLLKDSRVEDARKLFDMM---PVKDVVAVTN-MIGGYCEEGRLEEARALFDEMP- 202
            V++ G  +  ++ DA ++ D M    V+    + N +I GYC+ G+L EA  +F  M  
Sbjct: 335 GVLMDGYCRTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMND 394

Query: 203 ---KRNVVTWTTMVSGYARNRRVDVARKLFEVMPERNEV----SWTAMLMGYTHSGRMRE 255
              K +  T+ T+V GY R   VD A KL + M ++  V    ++  +L GY+  G   +
Sbjct: 395 WSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHD 454

Query: 256 ASEFFDAMPVKPV----VACNEMIMGFGFDGDVDRAKAVFEKMRER----DDGTWSAMI 306
               +  M  + V    ++C+ ++      GD + A  ++E +  R    D  T + MI
Sbjct: 455 VLSLWKMMLKRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLARGLLTDTITLNVMI 513



 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/346 (21%), Positives = 145/346 (41%), Gaps = 43/346 (12%)

Query: 167 FDMMPVKDVVAVTNMIGGYCEEGRLEEARALFDEMPKR-----NVVTWTTMVSGYARNRR 221
           F++ P  DV   + ++  YC  G +++A     E         NVVT+ ++++GYA    
Sbjct: 219 FEVSP--DVFTCSIVVNAYCRSGNVDKAMVFAKETESSLGLELNVVTYNSLINGYAMIGD 276

Query: 222 VDVARKLFEVMPERNEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFD 281
           V+   ++  +M ER  VS                          + VV    +I G+   
Sbjct: 277 VEGMTRVLRLMSERG-VS--------------------------RNVVTYTSLIKGYCKK 309

Query: 282 GDVDRAKAVFEKMRER----DDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXX 337
           G ++ A+ VFE ++E+    D   +  ++  Y R G   +A+ +   M   G   N    
Sbjct: 310 GLMEEAEHVFELLKEKKLVADQHMYGVLMDGYCRTGQIRDAVRVHDNMIEIGVRTNTTIC 369

Query: 338 XXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPL 397
                            Q+ +R+       D +  + L+  Y + G +  A  + ++   
Sbjct: 370 NSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQ 429

Query: 398 KDVV----MWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKE 453
           K+VV     +N ++ GYS+ G   + L++++ M   GV  D+IS   +L A    G   E
Sbjct: 430 KEVVPTVMTYNILLKGYSRIGAFHDVLSLWKMMLKRGVNADEISCSTLLEALFKLGDFNE 489

Query: 454 GREIFESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKMPM 499
             +++E++  +  +   I     M+  L +  +VN+A EI++ + +
Sbjct: 490 AMKLWENVLARGLLTDTIT-LNVMISGLCKMEKVNEAKEILDNVNI 534



 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 23/176 (13%)

Query: 132 AERLFWRMPEK----NVVSWTVMLGGLLKDSRVEDARKLF-DMMP----VKDVVAVTNMI 182
           AE +    P+K    N + + V + GL K  ++EDARKLF D++     + D    T +I
Sbjct: 703 AESVENSTPKKLLVPNNIVYNVAIAGLCKAGKLEDARKLFSDLLSSDRFIPDEYTYTILI 762

Query: 183 GGYCEEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMPER--- 235
            G    G + +A  L DEM  +    N+VT+  ++ G  +   VD A++L   +P++   
Sbjct: 763 HGCAIAGDINKAFTLRDEMALKGIIPNIVTYNALIKGLCKLGNVDRAQRLLHKLPQKGIT 822

Query: 236 -NEVSWTAMLMGYTHSGRMREASEFFDAMPVKPVVACNEMIMGFGFDGDVDRAKAV 290
            N +++  ++ G   SG + EA    + M  K +V       G    GDVD  K V
Sbjct: 823 PNAITYNTLIDGLVKSGNVAEAMRLKEKMIEKGLVR------GSDKQGDVDIPKEV 872



 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 99/224 (44%), Gaps = 12/224 (5%)

Query: 302 WSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLV 361
           +  ++KVY  KG    AL +F  M   G   +                      V+ +++
Sbjct: 158 FDMILKVYAEKGLVKNALHVFDNMGNYGRIPSLLSCNSLLSNLVRKGENFVALHVYDQMI 217

Query: 362 RSEFDQDLYVASALITMYVKCGD----LVRAKWIFNRYPLK-DVVMWNSMITGYSQHGLG 416
             E   D++  S ++  Y + G+    +V AK   +   L+ +VV +NS+I GY+  G  
Sbjct: 218 SFEVSPDVFTCSIVVNAYCRSGNVDKAMVFAKETESSLGLELNVVTYNSLINGYAMIGDV 277

Query: 417 EEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEH-YA 475
           E    V R M   GV  + +++  ++      G ++E   +FE +K K  V    +H Y 
Sbjct: 278 EGMTRVLRLMSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKKLVAD--QHMYG 335

Query: 476 CMVDLLGRAGQVNDAVEIVEKM---PMEPDAIVWGSLL-GACRT 515
            ++D   R GQ+ DAV + + M    +  +  +  SL+ G C++
Sbjct: 336 VLMDGYCRTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKS 379



 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 69/349 (19%), Positives = 151/349 (43%), Gaps = 50/349 (14%)

Query: 25  ISRYARIGQIENARKVFDETPHIHR---TTSSWNAMVAAYFQAHQPHQAVTLFETTPEKN 81
           IS   ++ ++  A+++ D   +I R      ++ A+   Y++     +A  + E    K 
Sbjct: 513 ISGLCKMEKVNEAKEILDNV-NIFRCKPAVQTYQALSHGYYKVGNLKEAFAVKEYMERKG 571

Query: 82  IVS----WNGMVSGFVKNGMVAEARRVFDAMPVR----NVVSWTSMVRGYVQEGNVEEAE 133
           I      +N ++SG  K   + +   +   +  R     V ++ +++ G+   G +++A 
Sbjct: 572 IFPTIEMYNTLISGAFKYRHLNKVADLVIELRARGLTPTVATYGALITGWCNIGMIDKAY 631

Query: 134 RLFWRMPEK----NVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDVVAVTNMIGGYCEEG 189
              + M EK    NV   + +   L +  ++++A      + ++ +V    ++ GY    
Sbjct: 632 ATCFEMIEKGITLNVNICSKIANSLFRLDKIDEA-----CLLLQKIVDFDLLLPGYQSLK 686

Query: 190 RLEEARA------------LFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMP 233
              EA A            + +  PK+    N + +   ++G  +  +++ ARKLF  + 
Sbjct: 687 EFLEASATTCLKTQKIAESVENSTPKKLLVPNNIVYNVAIAGLCKAGKLEDARKLFSDLL 746

Query: 234 ERN-----EVSWTAMLMGYTHSGRMREASEFFDAMPVK----PVVACNEMIMGFGFDGDV 284
             +     E ++T ++ G   +G + +A    D M +K     +V  N +I G    G+V
Sbjct: 747 SSDRFIPDEYTYTILIHGCAIAGDINKAFTLRDEMALKGIIPNIVTYNALIKGLCKLGNV 806

Query: 285 DRAKAVFEKMRER----DDGTWSAMIKVYERKGFELEALGLFARMQREG 329
           DRA+ +  K+ ++    +  T++ +I    + G   EA+ L  +M  +G
Sbjct: 807 DRAQRLLHKLPQKGITPNAITYNTLIDGLVKSGNVAEAMRLKEKMIEKG 855


>AT2G01740.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:326136-327815 REVERSE
           LENGTH=559
          Length = 559

 Score =  103 bits (257), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 105/480 (21%), Positives = 208/480 (43%), Gaps = 54/480 (11%)

Query: 44  TPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFETTP----EKNIVSWNGMVSGFVKNGMVA 99
           TPH     SS+N++V+   +  Q   A  +  + P    E +++S+N ++ G  +NG + 
Sbjct: 53  TPH----RSSFNSVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIR 108

Query: 100 EARRVFDAMPVR-------NVVSWTSMVRGYVQEGNVEEA---ERLFWRMPEKNVVSWTV 149
            A  V +++          ++VS+ S+  G+ +   ++E      +  +    NVV+++ 
Sbjct: 109 SASLVLESLRASHGFICKPDIVSFNSLFNGFSKMKMLDEVFVYMGVMLKCCSPNVVTYST 168

Query: 150 MLGGLLKDSRVEDARKLFDMMP----VKDVVAVTNMIGGYCEEGRLEEARALFDEMPK-- 203
            +    K   ++ A K F  M       +VV  T +I GYC+ G LE A +L+ EM +  
Sbjct: 169 WIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVR 228

Query: 204 --RNVVTWTTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREAS 257
              NVVT+T ++ G+ +   +  A +++  M E     N + +T ++ G+   G    A 
Sbjct: 229 MSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAM 288

Query: 258 EFFDAMPVK----PVVACNEMIMGFGFDGDVDRAKAVFEKMRER----DDGTWSAMIKVY 309
           +F   M  +     + A   +I G   +G +  A  + E M +     D   ++ M+  Y
Sbjct: 289 KFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAY 348

Query: 310 ERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQ-D 368
            + G    A+ ++ ++   G   +                     Q+H  +V    ++ +
Sbjct: 349 FKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIA------KNGQLHEAIVYFCIEKAN 402

Query: 369 LYVASALITMYVKCGDLVRAKWIFNRYP----LKDVVMWNSMITGYSQHGLGEEALNVFR 424
             + + LI    K GD +  + +F++      + D  M+ S I G  + G   +A  +  
Sbjct: 403 DVMYTVLIDALCKEGDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAFKLKT 462

Query: 425 DMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYACMVDLLGRA 484
            M   G+  D +++  ++   +  G + E R++F+ M     +  GI   + + DLL RA
Sbjct: 463 RMVQEGLLLDLLAYTTLIYGLASKGLMVEARQVFDEM-----LNSGISPDSAVFDLLIRA 517



 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 169/367 (46%), Gaps = 32/367 (8%)

Query: 50  TTSSWNAMVAAYFQAHQPHQAVTLFETTPEK----NIVSWNGMVSGFVKNGMVAEARRVF 105
           T S+W   +  + ++ +   A+  F +        N+V++  ++ G+ K G +  A  ++
Sbjct: 165 TYSTW---IDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLY 221

Query: 106 DAMP-VR---NVVSWTSMVRGYVQEGNVEEAERLFWRMPEK----NVVSWTVMLGGLLKD 157
             M  VR   NVV++T+++ G+ ++G ++ AE ++ RM E     N + +T ++ G  + 
Sbjct: 222 KEMRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQR 281

Query: 158 SRVEDARKLFDMMPVK----DVVAVTNMIGGYCEEGRLEEARALFDEMPKRNV----VTW 209
              ++A K    M  +    D+ A   +I G C  G+L+EA  + ++M K ++    V +
Sbjct: 282 GDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIF 341

Query: 210 TTMVSGYARNRRVDVARKLFEVMPER----NEVSWTAMLMGYTHSGRMREASEFFDAMPV 265
           TTM++ Y ++ R+  A  ++  + ER    + V+ + M+ G   +G++ EA  +F     
Sbjct: 342 TTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAIVYFCIEKA 401

Query: 266 KPVVACNEMIMGFGFDGDVDRAKAVFEKMRER----DDGTWSAMIKVYERKGFELEALGL 321
             V+    +I     +GD    + +F K+ E     D   +++ I    ++G  ++A  L
Sbjct: 402 NDVMY-TVLIDALCKEGDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAFKL 460

Query: 322 FARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVK 381
             RM +EG  L+                    RQV   ++ S    D  V   LI  Y K
Sbjct: 461 KTRMVQEGLLLDLLAYTTLIYGLASKGLMVEARQVFDEMLNSGISPDSAVFDLLIRAYEK 520

Query: 382 CGDLVRA 388
            G++  A
Sbjct: 521 EGNMAAA 527



 Score = 88.6 bits (218), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/370 (20%), Positives = 159/370 (42%), Gaps = 66/370 (17%)

Query: 25  ISRYARIGQIENARKVFDETPH--IHRTTSSWNAMVAAYFQAHQPHQAVTLFE----TTP 78
           I  + + G+++ A K F       +     ++  ++  Y +A     AV+L++       
Sbjct: 170 IDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVRM 229

Query: 79  EKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVR----NVVSWTSMVRGYVQEGNVEEAER 134
             N+V++  ++ GF K G +  A  ++  M       N + +T+++ G+ Q G+ + A +
Sbjct: 230 SLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMK 289

Query: 135 LFWRMPEK----NVVSWTVMLGGLLKDSRVEDARKLFDMMP----VKDVVAVTNMIGGYC 186
              +M  +    ++ ++ V++ GL  + ++++A ++ + M     V D+V  T M+  Y 
Sbjct: 290 FLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYF 349

Query: 187 EEGRLEEARALFDEMPKR----NVVTWTTMVSGYARNRRVDVARKLFEVMPERNEVSWTA 242
           + GR++ A  ++ ++ +R    +VV  +TM+ G A+N ++  A   F  + + N+V +T 
Sbjct: 350 KSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAIVYF-CIEKANDVMYTV 408

Query: 243 MLMGYTHSGRMREASEFF-----------------------------DAMPVKP------ 267
           ++      G   E    F                             DA  +K       
Sbjct: 409 LIDALCKEGDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAFKLKTRMVQEG 468

Query: 268 ----VVACNEMIMGFGFDGDVDRAKAVFEKMRER----DDGTWSAMIKVYERKGFELEAL 319
               ++A   +I G    G +  A+ VF++M       D   +  +I+ YE++G    A 
Sbjct: 469 LLLDLLAYTTLIYGLASKGLMVEARQVFDEMLNSGISPDSAVFDLLIRAYEKEGNMAAAS 528

Query: 320 GLFARMQREG 329
            L   MQR G
Sbjct: 529 DLLLDMQRRG 538



 Score = 76.3 bits (186), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 98/205 (47%), Gaps = 17/205 (8%)

Query: 54  WNAMVAAYFQAHQPHQAVTLFETTPEK----NIVSWNGMVSGFVKNGMVAEARRVFDAMP 109
           +  M+ AYF++ +   AV ++    E+    ++V+ + M+ G  KNG + EA  V+  + 
Sbjct: 341 FTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAI-VYFCIE 399

Query: 110 VRNVVSWTSMVRGYVQEGNVEEAERLFWRMPEKNVVS----WTVMLGGLLKDSRVEDARK 165
             N V +T ++    +EG+  E ERLF ++ E  +V     +T  + GL K   + DA K
Sbjct: 400 KANDVMYTVLIDALCKEGDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLVDAFK 459

Query: 166 LFDMMP----VKDVVAVTNMIGGYCEEGRLEEARALFDEMPKRNV----VTWTTMVSGYA 217
           L   M     + D++A T +I G   +G + EAR +FDEM    +      +  ++  Y 
Sbjct: 460 LKTRMVQEGLLLDLLAYTTLIYGLASKGLMVEARQVFDEMLNSGISPDSAVFDLLIRAYE 519

Query: 218 RNRRVDVARKLFEVMPERNEVSWTA 242
           +   +  A  L   M  R  V+  +
Sbjct: 520 KEGNMAAASDLLLDMQRRGLVTAVS 544



 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 87/407 (21%), Positives = 172/407 (42%), Gaps = 46/407 (11%)

Query: 202 PKRNVVTWTTMVSGYARNRRVDVARKLFEVMP----ERNEVSWTAMLMGYTHSGRMREAS 257
           P R+  ++ ++VS   +  +V  A  +   MP    E + +S+ +++ G+  +G +R AS
Sbjct: 54  PHRS--SFNSVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSAS 111

Query: 258 EFFDAMPVKPVVACNEMIMGFG--FDGDVDRAKAVFEKMRERDDG--------------- 300
              +++       C   I+ F   F+G        F KM+  D+                
Sbjct: 112 LVLESLRASHGFICKPDIVSFNSLFNG--------FSKMKMLDEVFVYMGVMLKCCSPNV 163

Query: 301 -TWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHAR 359
            T+S  I  + + G    AL  F  M+R+  + N                 +    ++  
Sbjct: 164 VTYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKE 223

Query: 360 LVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDV----VMWNSMITGYSQHGL 415
           + R     ++   +ALI  + K G++ RA+ +++R     V    +++ ++I G+ Q G 
Sbjct: 224 MRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGD 283

Query: 416 GEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEHYA 475
            + A+     M   G+  D  ++  ++S    +GK+KE  EI E M+ K  + P +  + 
Sbjct: 284 SDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDME-KSDLVPDMVIFT 342

Query: 476 CMVDLLGRAGQVNDAVEIVEKM---PMEPDAIVWGSLLGACRTHMKLDLAEVAVEKLAQL 532
            M++   ++G++  AV +  K+     EPD +   +++     + +L  A V       +
Sbjct: 343 TMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAIVYF----CI 398

Query: 533 EPKNAGPYVLLSHMYASKGRWEDVEVVREKIKTRSVI--KLPGYSWI 577
           E  N   Y +L      +G + +VE +  KI    ++  K    SWI
Sbjct: 399 EKANDVMYTVLIDALCKEGDFIEVERLFSKISEAGLVPDKFMYTSWI 445


>AT1G74580.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:28020777-28023068 FORWARD
           LENGTH=763
          Length = 763

 Score =  103 bits (256), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 126/573 (21%), Positives = 243/573 (42%), Gaps = 83/573 (14%)

Query: 23  GAISRYARIGQIENARKVFDETPH--IHRTTSSWNAMVA-----AYF-QAHQPHQAVTLF 74
           GA+  Y R G+++ A  VF+         T  S+NA+++      YF QAH+ +  +   
Sbjct: 81  GAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDR 140

Query: 75  ETTPEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVR----NVVSWTSMVRGYVQEGNVE 130
             TP+  + S+   +  F K      A R+ + M  +    NVV++ ++V G+ +E    
Sbjct: 141 GITPD--VYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKA 198

Query: 131 EAERLFWRMPEKNVV----SWTVMLGGLLKDSRVEDARKLFDMMPVKDVV----AVTNMI 182
           E   LF +M    V     ++  +L  L K   V++  KL D +  + V+         I
Sbjct: 199 EGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFI 258

Query: 183 GGYCEEGRLEEA----RALFDEMPKRNVVTWTTMVSGYARNRRVDVAR----KLFEVMPE 234
            G C+ G L+ A      L ++ PK +V+T+  ++ G  +N +   A     K+     E
Sbjct: 259 QGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLE 318

Query: 235 RNEVSWTAMLMGYTHSGRMREASEFF-DAMP---VKPVVACNEMIMGFGFDGDVDRAKAV 290
            +  ++  ++ GY   G ++ A     DA+    V        +I G   +G+ +RA A+
Sbjct: 319 PDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALAL 378

Query: 291 FEKMRER----DDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXX 346
           F +   +    +   ++ +IK    +G  LEA  L   M  +G                 
Sbjct: 379 FNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLI--------------- 423

Query: 347 XXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRA----KWIFNRYPLKDVVM 402
                                ++   + L+    K G +  A    K + ++    D+  
Sbjct: 424 --------------------PEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFT 463

Query: 403 WNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMK 462
           +N +I GYS     E AL +   M  +GV PD  ++  +L+    + K ++  E +++M 
Sbjct: 464 FNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMV 523

Query: 463 CKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKM---PMEPDAIVWGSLLGACRTHMKL 519
            K    P +  +  +++ L R  ++++A+ ++E+M    + PDA+ +G+L+     +  L
Sbjct: 524 EK-GCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDL 582

Query: 520 DLAEVAVEKLAQ-LEPKNAGP-YVLLSHMYASK 550
           D A     K+ +  +  ++ P Y ++ H +  K
Sbjct: 583 DGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEK 615


>AT3G54980.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:20370293-20372848 FORWARD
           LENGTH=851
          Length = 851

 Score =  102 bits (253), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 111/519 (21%), Positives = 236/519 (45%), Gaps = 41/519 (7%)

Query: 18  QCTSTGAISRYARIGQIENARKVFDE--TPHIHRTTSSWNAMVAAYFQAHQPHQAVTLFE 75
           Q T T  I    + G +++A ++ DE  +  I     +  +++  + + +    A+ LF+
Sbjct: 304 QETYTSVILASVKQGNMDDAIRLKDEMLSDGISMNVVAATSLITGHCKNNDLVSALVLFD 363

Query: 76  TT----PEKNIVSWNGMVSGFVKNGMVAEARRVFDAMPVR----NVVSWTSMVRGYVQEG 127
                 P  N V+++ ++  F KNG + +A   +  M V     +V    ++++G+++  
Sbjct: 364 KMEKEGPSPNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQ 423

Query: 128 NVEEAERLFWRMPEK---NVVSWTVMLGGLLKDSRVEDARKLFDMMPVK----DVVAVTN 180
             EEA +LF    E    NV     +L  L K  + ++A +L   M  +    +VV+  N
Sbjct: 424 KHEEALKLFDESFETGLANVFVCNTILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNN 483

Query: 181 MIGGYCEEGRLEEARALFDEMPKR----NVVTWTTMVSGYARN----RRVDVARKLFEVM 232
           ++ G+C +  ++ AR +F  + ++    N  T++ ++ G  RN      ++V   +    
Sbjct: 484 VMLGHCRQKNMDLARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSN 543

Query: 233 PERNEVSWTAMLMGYTHSGRMREASEFFDAM--PVKPVVAC---NEMIMGFGFDGDVDRA 287
            E N V +  ++ G    G+  +A E    M    +  V+C   N +I GF  +G++D A
Sbjct: 544 IEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSA 603

Query: 288 KAVFEKM----RERDDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXX 343
            A +E+M       +  T+++++    +     +AL +   M+ +G  L+ P        
Sbjct: 604 VAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDG 663

Query: 344 XXXXXXXDHGRQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIFNRYPLKDVV-- 401
                  +    + + L+    +    + ++LI+ +   G++V A  ++ +  LKD +  
Sbjct: 664 FCKRSNMESASALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKM-LKDGLRC 722

Query: 402 ---MWNSMITGYSQHGLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIF 458
               + ++I G  + G    A  ++ +M   G+ PD+I +  +++  S  G+  +  ++F
Sbjct: 723 DLGTYTTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMF 782

Query: 459 ESMKCKYQVEPGIEHYACMVDLLGRAGQVNDAVEIVEKM 497
           E MK K  V P +  Y  ++    R G +++A  + ++M
Sbjct: 783 EEMK-KNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEM 820



 Score = 99.0 bits (245), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/451 (20%), Positives = 206/451 (45%), Gaps = 42/451 (9%)

Query: 28  YARIGQIENARKVFDETPHIHRTTSSWN--AMVAAYFQAHQPHQAVTLFETTPEK---NI 82
           + + G++E A + + +   +  T S ++   ++  + +  +  +A+ LF+ + E    N+
Sbjct: 384 FRKNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDESFETGLANV 443

Query: 83  VSWNGMVSGFVKNGMVAEARRVFDAMPVR----NVVSWTSMVRGYVQEGNVEEAERLFWR 138
              N ++S   K G   EA  +   M  R    NVVS+ +++ G+ ++ N++ A  +F  
Sbjct: 444 FVCNTILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIVFSN 503

Query: 139 MPEK----NVVSWTVMLGGLLKDSRVEDARKLFDMMPVKDV----VAVTNMIGGYCEEGR 190
           + EK    N  ++++++ G  ++   ++A ++ + M   ++    V    +I G C+ G+
Sbjct: 504 ILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQ 563

Query: 191 LEEARALFDEM--PKR---NVVTWTTMVSGYARNRRVDVARKLFEVM----PERNEVSWT 241
             +AR L   M   KR   + +++ +++ G+ +   +D A   +E M       N +++T
Sbjct: 564 TSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYT 623

Query: 242 AMLMGYTHSGRMREASEFFDAMPVKPV----VACNEMIMGFGFDGDVDRAKAVFEKMRER 297
           +++ G   + RM +A E  D M  K V     A   +I GF    +++ A A+F ++ E 
Sbjct: 624 SLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEE 683

Query: 298 ----DDGTWSAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHG 353
                   ++++I  +   G  + AL L+ +M ++G   +                    
Sbjct: 684 GLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKDGNLILA 743

Query: 354 RQVHARLVRSEFDQDLYVASALITMYVKCGDLVRAKWIF------NRYPLKDVVMWNSMI 407
            +++  +       D  + + ++    K G  V+   +F      N  P  +V+++N++I
Sbjct: 744 SELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTP--NVLIYNAVI 801

Query: 408 TGYSQHGLGEEALNVFRDMCLSGVPPDDISF 438
            G+ + G  +EA  +  +M   G+ PD  +F
Sbjct: 802 AGHYREGNLDEAFRLHDEMLDKGILPDGATF 832



 Score = 82.8 bits (203), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 114/585 (19%), Positives = 233/585 (39%), Gaps = 86/585 (14%)

Query: 9   RVCMVQVRFQCTSTGAISRYARIGQIENARKVFDETPHIHRTTSSWNAMVAAYFQAHQPH 68
           R   + +R+  TS         + ++ ++ K F         + ++N ++ AY +  Q  
Sbjct: 125 RASDLLIRYVSTSNPTPMASVLVSKLVDSAKSFG----FEVNSRAFNYLLNAYSKDRQTD 180

Query: 69  QAVTLFETTPEKNIVSW----NGMVSGFVKNGMVAEARRVFDAMPVRNV----VSWTSMV 120
            AV +     E +++ +    N  +S  V+   + EA+ ++  M    V    V+   ++
Sbjct: 181 HAVDIVNQMLELDVIPFFPYVNRTLSALVQRNSLTEAKELYSRMVAIGVDGDNVTTQLLM 240

Query: 121 RGYVQEGNVEEA--------ER---------------------------LFWRMPEKNVV 145
           R  ++E    EA        ER                           L   M EK + 
Sbjct: 241 RASLREEKPAEALEVLSRAIERGAEPDSLLYSLAVQACCKTLDLAMANSLLREMKEKKLC 300

Query: 146 -----SWTVMLGGLLKDSRVEDARKLFDMMPVK----DVVAVTNMIGGYCEEGRLEEARA 196
                ++T ++   +K   ++DA +L D M       +VVA T++I G+C+   L  A  
Sbjct: 301 VPSQETYTSVILASVKQGNMDDAIRLKDEMLSDGISMNVVAATSLITGHCKNNDLVSALV 360

Query: 197 LFDEM----PKRNVVTWTTMVSGYARNRRVDVARKLFEVM------PERNEVSWTAMLMG 246
           LFD+M    P  N VT++ ++  + +N  ++ A + ++ M      P    V    ++ G
Sbjct: 361 LFDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVH--TIIQG 418

Query: 247 YTHSGRMREASEFFDA---MPVKPVVACNEMIMGFGFDGDVDRAKAVFEKMRERDDGTW- 302
           +    +  EA + FD      +  V  CN ++      G  D A  +  KM  R  G   
Sbjct: 419 WLKGQKHEEALKLFDESFETGLANVFVCNTILSWLCKQGKTDEATELLSKMESRGIGPNV 478

Query: 303 ----SAMIKVYERKGFELEALGLFARMQREGAALNFPXXXXXXXXXXXXXXXDHGRQVHA 358
               + M+    +K  +L  + +F+ +  +G   N                  +  +V  
Sbjct: 479 VSYNNVMLGHCRQKNMDLARI-VFSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVN 537

Query: 359 RLVRSEFDQDLYVASALITMYVKCGDLVRAKWIF-NRYPLKDVVM----WNSMITGYSQH 413
            +  S  + +  V   +I    K G   +A+ +  N    K + +    +NS+I G+ + 
Sbjct: 538 HMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKE 597

Query: 414 GLGEEALNVFRDMCLSGVPPDDISFIGVLSACSYSGKVKEGREIFESMKCKYQVEPGIEH 473
           G  + A+  + +MC +G+ P+ I++  +++    + ++ +  E+ + MK K  V+  I  
Sbjct: 598 GEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNK-GVKLDIPA 656

Query: 474 YACMVDLLGRAGQVNDAVEIVEKM---PMEPDAIVWGSLLGACRT 515
           Y  ++D   +   +  A  +  ++    + P   ++ SL+   R 
Sbjct: 657 YGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISGFRN 701