Miyakogusa Predicted Gene

Lj1g3v2536080.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2536080.1 tr|B9H5T2|B9H5T2_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_207971
PE=4,84.65,0,4-HYDROXYBENZOATE OCTAPRENYLTRANSFERASE,NULL;
PRENYLTRANSFERASES,NULL; seg,NULL; UbiA,UbiA prenyltra,CUFF.29117.1
         (216 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G23660.2 | Symbols: AtPPT1, PPT1 | polyprenyltransferase 1 | ...   290   7e-79
AT4G23660.1 | Symbols: AtPPT1, PPT1 | polyprenyltransferase 1 | ...   290   7e-79
AT4G23660.3 | Symbols: PPT1 | polyprenyltransferase 1 | chr4:123...   276   6e-75

>AT4G23660.2 | Symbols: AtPPT1, PPT1 | polyprenyltransferase 1 |
           chr4:12328086-12331359 REVERSE LENGTH=407
          Length = 407

 Score =  290 bits (741), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 147/199 (73%), Positives = 160/199 (80%)

Query: 2   QVERTKSRPVASGLLTPXXXXXXXXXXXXXXXXXXXXXNNYSRVLGASSLFLVFSYPLMK 61
           +V+RTK RP+ASGLLTP                     NNYSRVLGASSL LVFSYPLMK
Sbjct: 193 KVDRTKLRPIASGLLTPFQGIGFLGLQLLLGLGILLQLNNYSRVLGASSLLLVFSYPLMK 252

Query: 62  RFTFWPQAYLGLTFNWGALLGWAAIKGSLDPSIVLPLYASGVFWTLVYDTIYAHQDKEDD 121
           RFTFWPQA+LGLT NWGALLGW A+KGS+ PSIVLPLY SGV WTLVYDTIYAHQDKEDD
Sbjct: 253 RFTFWPQAFLGLTINWGALLGWTAVKGSIAPSIVLPLYLSGVCWTLVYDTIYAHQDKEDD 312

Query: 122 LKVGVKSTALRFGDLTKQWITGFGFACLGNLALSGFNAELGWPYYACLAAASGHLGWQVW 181
           +KVGVKSTALRFGD TK W+TGFG A +G LALSGF+A+LGW YYA LAAASG LGWQ+ 
Sbjct: 313 VKVGVKSTALRFGDNTKLWLTGFGTASIGFLALSGFSADLGWQYYASLAAASGQLGWQIG 372

Query: 182 TVDLSSRADCNRKFVSNKW 200
           T DLSS ADC+RKFVSNKW
Sbjct: 373 TADLSSGADCSRKFVSNKW 391


>AT4G23660.1 | Symbols: AtPPT1, PPT1 | polyprenyltransferase 1 |
           chr4:12328086-12331359 REVERSE LENGTH=407
          Length = 407

 Score =  290 bits (741), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 147/199 (73%), Positives = 160/199 (80%)

Query: 2   QVERTKSRPVASGLLTPXXXXXXXXXXXXXXXXXXXXXNNYSRVLGASSLFLVFSYPLMK 61
           +V+RTK RP+ASGLLTP                     NNYSRVLGASSL LVFSYPLMK
Sbjct: 193 KVDRTKLRPIASGLLTPFQGIGFLGLQLLLGLGILLQLNNYSRVLGASSLLLVFSYPLMK 252

Query: 62  RFTFWPQAYLGLTFNWGALLGWAAIKGSLDPSIVLPLYASGVFWTLVYDTIYAHQDKEDD 121
           RFTFWPQA+LGLT NWGALLGW A+KGS+ PSIVLPLY SGV WTLVYDTIYAHQDKEDD
Sbjct: 253 RFTFWPQAFLGLTINWGALLGWTAVKGSIAPSIVLPLYLSGVCWTLVYDTIYAHQDKEDD 312

Query: 122 LKVGVKSTALRFGDLTKQWITGFGFACLGNLALSGFNAELGWPYYACLAAASGHLGWQVW 181
           +KVGVKSTALRFGD TK W+TGFG A +G LALSGF+A+LGW YYA LAAASG LGWQ+ 
Sbjct: 313 VKVGVKSTALRFGDNTKLWLTGFGTASIGFLALSGFSADLGWQYYASLAAASGQLGWQIG 372

Query: 182 TVDLSSRADCNRKFVSNKW 200
           T DLSS ADC+RKFVSNKW
Sbjct: 373 TADLSSGADCSRKFVSNKW 391


>AT4G23660.3 | Symbols: PPT1 | polyprenyltransferase 1 |
           chr4:12328086-12331359 REVERSE LENGTH=429
          Length = 429

 Score =  276 bits (707), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 147/221 (66%), Positives = 160/221 (72%), Gaps = 22/221 (9%)

Query: 2   QVERTKSRPVASGLLTPXXXXXXXXXXXXXXXXXXXXXNNYSRVLGASSLFLVFSYPLMK 61
           +V+RTK RP+ASGLLTP                     NNYSRVLGASSL LVFSYPLMK
Sbjct: 193 KVDRTKLRPIASGLLTPFQGIGFLGLQLLLGLGILLQLNNYSRVLGASSLLLVFSYPLMK 252

Query: 62  RFTFWPQAYLGLTFNWGALLGWAAIKGSLDPSIVLPLYASGVFWTLVYDTIYAHQ----- 116
           RFTFWPQA+LGLT NWGALLGW A+KGS+ PSIVLPLY SGV WTLVYDTIYAHQ     
Sbjct: 253 RFTFWPQAFLGLTINWGALLGWTAVKGSIAPSIVLPLYLSGVCWTLVYDTIYAHQLHHHR 312

Query: 117 -----------------DKEDDLKVGVKSTALRFGDLTKQWITGFGFACLGNLALSGFNA 159
                            DKEDD+KVGVKSTALRFGD TK W+TGFG A +G LALSGF+A
Sbjct: 313 FLFQLLFHVSCKCIHFDDKEDDVKVGVKSTALRFGDNTKLWLTGFGTASIGFLALSGFSA 372

Query: 160 ELGWPYYACLAAASGHLGWQVWTVDLSSRADCNRKFVSNKW 200
           +LGW YYA LAAASG LGWQ+ T DLSS ADC+RKFVSNKW
Sbjct: 373 DLGWQYYASLAAASGQLGWQIGTADLSSGADCSRKFVSNKW 413