Miyakogusa Predicted Gene

Lj1g3v2536050.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2536050.1 Non Chatacterized Hit- tr|G7JS00|G7JS00_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,38.3,2e-17,seg,NULL; coiled-coil,NULL,CUFF.29142.1
         (603 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G38580.1 | Symbols:  | Mitochondrial ATP synthase D chain-rel...   160   3e-39

>AT2G38580.1 | Symbols:  | Mitochondrial ATP synthase D
           chain-related protein | chr2:16138838-16142371 FORWARD
           LENGTH=482
          Length = 482

 Score =  160 bits (404), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 120/321 (37%), Positives = 180/321 (56%), Gaps = 33/321 (10%)

Query: 267 EAILEDTIRKLNEENDMHMKKEAISEETISKLKKENAFHIQKEAISEETIKKLKEENDEH 326
           E +LE+TI++L EEN  +++KEA  EE + +L+ EN  HIQKEA+ EE +  LK EN+ H
Sbjct: 81  EVLLEETIKQLREENGSYLQKEAGFEENVRRLETENEAHIQKEALLEERLVHLKTENEAH 140

Query: 327 VYKEVTLEELIKKLQAEKELQTQKQTELEMKIAQLQGENNSLIQREAGLVEKTNLLLNEK 386
           V+ E  LE  +  L+ E E   Q +  LE K+  L+ EN + IQ EA L E+        
Sbjct: 141 VHNEALLEGKLLHLRTENEDHIQNEALLEEKLLHLRTENEAHIQNEALLEER-------- 192

Query: 387 VVLSLKGESLERKINLLESDLSSFSEKESGLEMRIAQLQRENDSLIQKEAELVGKTNQLL 446
            +L  + E+   K N            E  LE R+ Q + +ND L+++ +    +  QLL
Sbjct: 193 -LLHFRTENEAHKQN------------EEKLEERLVQYKNKNDMLLREMSSTEAQMRQLL 239

Query: 447 NEKTVLSLKGESLEQKVNLLESDLSSFVEKENATKDIISNLNRSISVLQVQVAELEEFRS 506
           +E++  + K  SLE+KV  L+ D  S V +E +++++IS+LN  I+ L+ QV ELE+ +S
Sbjct: 240 DERSTFTQKEASLEKKVQQLQHDEESLVAEEKSSREMISSLNNEIARLRAQVTELEKSKS 299

Query: 507 XXXXXXXXXXXXVSGLQSTIQNLENXXXXXXXXXXXXXXXXXENDDLKSQIEAACTLVEK 566
                       +S LQ   +N ++                   ++L SQIEAACTLVEK
Sbjct: 300 NLLEQNQSLKETISNLQVQHENHDSNAKGASE------------EELNSQIEAACTLVEK 347

Query: 567 LVAENAELVEKVNELYIELDR 587
           L+ ENA+LVEKVNEL I+L++
Sbjct: 348 LITENADLVEKVNELCIKLNQ 368



 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/284 (32%), Positives = 138/284 (48%), Gaps = 48/284 (16%)

Query: 146 EETIKTLGNENDILKQNAVTSDETIGKLKGENAMLIQKETTSEETIKKLKEENDTYIQKE 205
           EETIK                      L+ EN   +QKE   EE +++L+ EN+ +IQKE
Sbjct: 85  EETIKQ---------------------LREENGSYLQKEAGFEENVRRLETENEAHIQKE 123

Query: 206 AISEDIIRNLKAENAMHIQKEAISEETIRKLKEQNDIHMQKEVASEETTRKLKEHDMRVQ 265
           A+ E+ + +LK EN  H+  EA+ E  +  L+ +N+ H+Q E                  
Sbjct: 124 ALLEERLVHLKTENEAHVHNEALLEGKLLHLRTENEDHIQNE------------------ 165

Query: 266 KEAILEDTIRKLNEENDMHMKKEAISEETISKLKKENAFHIQKEAISEETIKKLKEENDE 325
             A+LE+ +  L  EN+ H++ EA+ EE +   + EN  H Q E   EE + + K +ND 
Sbjct: 166 --ALLEEKLLHLRTENEAHIQNEALLEERLLHFRTENEAHKQNEEKLEERLVQYKNKNDM 223

Query: 326 HVYKEVTLEELIKKLQAEKELQTQKQTELEMKIAQLQGENNSLIQREAGLVEKTNLLLNE 385
            + +  + E  +++L  E+   TQK+  LE K+ QLQ +  SL+  E    E  + L NE
Sbjct: 224 LLREMSSTEAQMRQLLDERSTFTQKEASLEKKVQQLQHDEESLVAEEKSSREMISSLNNE 283

Query: 386 KVVLSLKGESLER-KINLLESDLSSFSEKESGLEMRIAQLQREN 428
              L  +   LE+ K NLLE +  S  E  S L     Q+Q EN
Sbjct: 284 IARLRAQVTELEKSKSNLLEQN-QSLKETISNL-----QVQHEN 321


  Database: TAIR10_pep
    Posted date:  Feb 16, 2011  9:43 AM
  Number of letters in database: 14,482,855
  Number of sequences in database:  35,386
  
Lambda     K      H
   0.321    0.123    0.308 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 35386
Number of Hits to DB: 41,369,494,315
Number of extensions: 1757381056
Number of successful extensions: 6764671
Number of sequences better than 1.0e-05: 165622
Number of HSP's gapped: 5354500
Number of HSP's successfully gapped: 464970
Length of database: 14,482,855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.9 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 105 (45.1 bits)