Miyakogusa Predicted Gene
- Lj1g3v2535040.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v2535040.1 Non Chatacterized Hit- tr|I1L6X1|I1L6X1_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.8009
PE=,87.46,0,seg,NULL; K homology RNA-binding domain,K Homology domain;
Eukaryotic type KH-domain (KH-domain
type,NODE_42273_length_1107_cov_70.825653.path1.1
(287 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G38610.2 | Symbols: | RNA-binding KH domain-containing prote... 430 e-121
AT2G38610.1 | Symbols: | RNA-binding KH domain-containing prote... 430 e-121
AT3G08620.1 | Symbols: | RNA-binding KH domain-containing prote... 400 e-112
AT5G56140.1 | Symbols: | RNA-binding KH domain-containing prote... 261 3e-70
AT4G26480.1 | Symbols: | RNA-binding KH domain-containing prote... 261 4e-70
AT1G09660.1 | Symbols: | RNA-binding KH domain-containing prote... 243 1e-64
AT1G09660.2 | Symbols: | RNA-binding KH domain-containing prote... 211 6e-55
AT5G51300.3 | Symbols: | splicing factor-related | chr5:2084988... 99 4e-21
AT5G51300.2 | Symbols: | splicing factor-related | chr5:2084988... 99 4e-21
AT5G51300.1 | Symbols: | splicing factor-related | chr5:2084988... 99 4e-21
>AT2G38610.2 | Symbols: | RNA-binding KH domain-containing protein
| chr2:16147552-16149638 REVERSE LENGTH=286
Length = 286
Score = 430 bits (1105), Expect = e-121, Method: Compositional matrix adjust.
Identities = 218/266 (81%), Positives = 235/266 (88%), Gaps = 6/266 (2%)
Query: 1 MSGLYNPNFSPSPVRXXXXXXQIRGTPSSEMDS-QYLSELLAERQKLGPFMQVLPTCNRL 59
MSGLYN + SP R QIR TP E+DS QYL+ELLAE QKL PFMQVLP C+RL
Sbjct: 1 MSGLYNNSSYFSPARAASP--QIRSTP--EIDSSQYLTELLAEHQKLTPFMQVLPICSRL 56
Query: 60 LNQEILRVSGMLSNQGFGDFDRLRHRSPSPMAPSNLMSNVPGTGLGGWNGLQQERLCGTP 119
LNQE+ RVSGM+SNQGFGDFDRLRHRSPSPMA SNLMSNV TGLGGWNGL QERL GTP
Sbjct: 57 LNQEMFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVSNTGLGGWNGLSQERLSGTP 116
Query: 120 GMTMDWQVAPASPTSYTVRRILRLEIPVDTFPNFNFVGRLLGPRGNSLKRVEATTGCRVF 179
GMTMDWQ AP SP+SYTV+RILRLEIPVD +PNFNFVGRLLGPRGNSLKRVEATTGCRVF
Sbjct: 117 GMTMDWQGAPGSPSSYTVKRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVF 176
Query: 180 IRGTGSIKDPDKEEKLRGKPGYEHLYEPLHILIEADLPANIVDIRLRQAQEIIEELLKPV 239
IRG GSIKDP+KE+KLRG+PGYEHL E LHILIEADLPA+IV+IRLRQAQEIIEELLKPV
Sbjct: 177 IRGKGSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELLKPV 236
Query: 240 DESQDYVKKQQLRELALLNS-NLREE 264
DESQD++K+QQLRELALLNS NLREE
Sbjct: 237 DESQDFIKRQQLRELALLNSNNLREE 262
>AT2G38610.1 | Symbols: | RNA-binding KH domain-containing protein
| chr2:16147552-16149638 REVERSE LENGTH=286
Length = 286
Score = 430 bits (1105), Expect = e-121, Method: Compositional matrix adjust.
Identities = 218/266 (81%), Positives = 235/266 (88%), Gaps = 6/266 (2%)
Query: 1 MSGLYNPNFSPSPVRXXXXXXQIRGTPSSEMDS-QYLSELLAERQKLGPFMQVLPTCNRL 59
MSGLYN + SP R QIR TP E+DS QYL+ELLAE QKL PFMQVLP C+RL
Sbjct: 1 MSGLYNNSSYFSPARAASP--QIRSTP--EIDSSQYLTELLAEHQKLTPFMQVLPICSRL 56
Query: 60 LNQEILRVSGMLSNQGFGDFDRLRHRSPSPMAPSNLMSNVPGTGLGGWNGLQQERLCGTP 119
LNQE+ RVSGM+SNQGFGDFDRLRHRSPSPMA SNLMSNV TGLGGWNGL QERL GTP
Sbjct: 57 LNQEMFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVSNTGLGGWNGLSQERLSGTP 116
Query: 120 GMTMDWQVAPASPTSYTVRRILRLEIPVDTFPNFNFVGRLLGPRGNSLKRVEATTGCRVF 179
GMTMDWQ AP SP+SYTV+RILRLEIPVD +PNFNFVGRLLGPRGNSLKRVEATTGCRVF
Sbjct: 117 GMTMDWQGAPGSPSSYTVKRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVF 176
Query: 180 IRGTGSIKDPDKEEKLRGKPGYEHLYEPLHILIEADLPANIVDIRLRQAQEIIEELLKPV 239
IRG GSIKDP+KE+KLRG+PGYEHL E LHILIEADLPA+IV+IRLRQAQEIIEELLKPV
Sbjct: 177 IRGKGSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELLKPV 236
Query: 240 DESQDYVKKQQLRELALLNS-NLREE 264
DESQD++K+QQLRELALLNS NLREE
Sbjct: 237 DESQDFIKRQQLRELALLNSNNLREE 262
>AT3G08620.1 | Symbols: | RNA-binding KH domain-containing protein
| chr3:2617925-2620314 FORWARD LENGTH=283
Length = 283
Score = 400 bits (1027), Expect = e-112, Method: Compositional matrix adjust.
Identities = 215/288 (74%), Positives = 238/288 (82%), Gaps = 6/288 (2%)
Query: 1 MSGLYN-PNFSPSPVRXXXXXXQIRGTPSSEMDSQYLSELLAERQKLGPFMQVLPTCNRL 59
MSGLYN NFSPS QIR TPSS++DSQY+S+LLAE QKLGPFMQVLP C+RL
Sbjct: 1 MSGLYNYNNFSPS----RAASPQIR-TPSSDVDSQYISQLLAEHQKLGPFMQVLPICSRL 55
Query: 60 LNQEILRVSGMLSNQGFGDFDRLRHRSPSPMAPSNLMSNVPGTGLGGWNGLQQERLCGTP 119
LNQEI R++GM+ NQGF DFDRLRHRSPSPMA NLMSNV G GLGGWNGL ER+ G
Sbjct: 56 LNQEIFRITGMMPNQGFTDFDRLRHRSPSPMASPNLMSNVSGGGLGGWNGLPPERIGGPH 115
Query: 120 GMTMDWQVAPASPTSYTVRRILRLEIPVDTFPNFNFVGRLLGPRGNSLKRVEATTGCRVF 179
GM M+WQ APASP+SY V+RILRL++PVDT+PNFNFVGRLLGPRGNSLKRVEATTGCRV+
Sbjct: 116 GMAMEWQGAPASPSSYPVKRILRLDLPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVY 175
Query: 180 IRGTGSIKDPDKEEKLRGKPGYEHLYEPLHILIEADLPANIVDIRLRQAQEIIEELLKPV 239
IRG GSIKDP+KEEKL+GKPGYEHL E LHILIEADLP +IVDI+LRQAQEIIEEL+KPV
Sbjct: 176 IRGKGSIKDPEKEEKLKGKPGYEHLNEQLHILIEADLPIDIVDIKLRQAQEIIEELVKPV 235
Query: 240 DESQDYVKKQQLRELALLNSNLREEXXXXXXXXXXXXXXXMKRAKTGR 287
DESQDY+K+QQLRELALLNSNLRE MKR KTGR
Sbjct: 236 DESQDYIKRQQLRELALLNSNLRENSPGPSGSVSPFNSNAMKRPKTGR 283
>AT5G56140.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:22725462-22727932 FORWARD LENGTH=315
Length = 315
Score = 261 bits (668), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 143/254 (56%), Positives = 171/254 (67%), Gaps = 7/254 (2%)
Query: 34 QYLSELLAERQKLGPFMQVLPTCNRLLNQEILRVSGMLSNQGFGDFDRLRHRSPSPMAPS 93
+YLSELLAER KL PF+ VLP RLLNQEILRV+ +L N L H PSP+A
Sbjct: 64 KYLSELLAERHKLTPFLPVLPHAFRLLNQEILRVTTLLENATVLSQSGLDH--PSPLASG 121
Query: 94 NLMSNVPGTGLGGWNG-LQQER-LCGTPGMTMDWQVAPASPTSYTVRRILRLEIPVDTFP 151
+ N + GW ER + +PG +W +P S + +R +R++IPVD +P
Sbjct: 122 GIFQNA-RADMNGWASQFPSERSVPSSPGP--NWLNSPGSSSGLIAKRTIRVDIPVDNYP 178
Query: 152 NFNFVGRLLGPRGNSLKRVEATTGCRVFIRGTGSIKDPDKEEKLRGKPGYEHLYEPLHIL 211
NFNFVGRLLGPRGNSLKRVEA+T CRV IRG GSIKDP KEE +RGKPGYEHL EPLHIL
Sbjct: 179 NFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEEMMRGKPGYEHLNEPLHIL 238
Query: 212 IEADLPANIVDIRLRQAQEIIEELLKPVDESQDYVKKQQLRELALLNSNLREEXXXXXXX 271
+EA+LP IVD RL QA+EI+++LL P++E+ D KKQQLRELALLN LREE
Sbjct: 239 VEAELPIEIVDARLMQAREILDDLLTPMEETHDMYKKQQLRELALLNGTLREEGSPMSGS 298
Query: 272 XXXXXXXXMKRAKT 285
MKRAKT
Sbjct: 299 VSPYNSLGMKRAKT 312
>AT4G26480.1 | Symbols: | RNA-binding KH domain-containing protein
| chr4:13372885-13375793 REVERSE LENGTH=308
Length = 308
Score = 261 bits (666), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 140/264 (53%), Positives = 175/264 (66%), Gaps = 6/264 (2%)
Query: 23 IRGTPSSEMDSQ-YLSELLAERQKLGPFMQVLPTCNRLLNQEILRVSGMLSNQGFGDFDR 81
+R PS ++ + YLSELLAER KL PF+ VLP RL+NQEILRV+ +L N +
Sbjct: 48 LRSQPSFLVEQEKYLSELLAERHKLTPFLPVLPHVCRLMNQEILRVTTLLENA----LSQ 103
Query: 82 LRHRSPSPMAPSNLMSNVPGTGLGGWNGLQQERLCGTPGMTMDWQVAPASPTSYTVRRIL 141
R PSP+A + N + GW + +W +P S + V+R +
Sbjct: 104 SRFDHPSPLASGGIFQNS-RADMNGWASQFPSERSVSSSPAPNWLNSPGSSSGLIVKRTI 162
Query: 142 RLEIPVDTFPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGTGSIKDPDKEEKLRGKPGY 201
R++IPVD +PN+NFVGRLLGPRGNSLKRVEA+T CRV IRG GSIKDP KE+ +RGKPGY
Sbjct: 163 RVDIPVDKYPNYNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEDMMRGKPGY 222
Query: 202 EHLYEPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYVKKQQLRELALLNSNL 261
EHL EPLHIL+EA+LP IVD RL QA+EI+++LL PV+E+ D+ KKQQLRELALLN +L
Sbjct: 223 EHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPVEETHDFYKKQQLRELALLNGSL 282
Query: 262 REEXXXXXXXXXXXXXXXMKRAKT 285
REE MKRAKT
Sbjct: 283 REEGSPMSGSISPYNSLGMKRAKT 306
>AT1G09660.1 | Symbols: | RNA-binding KH domain-containing protein
| chr1:3128032-3130791 REVERSE LENGTH=298
Length = 298
Score = 243 bits (619), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 129/240 (53%), Positives = 162/240 (67%), Gaps = 20/240 (8%)
Query: 34 QYLSELLAERQKLGPFMQVLPTCNRLLNQEILRVSGMLSNQGFGDFDRLRHRSP--SPMA 91
+YL+ELL ERQKLGPF+QV+P C RLLN EI RVS F D DR H SP S
Sbjct: 44 RYLTELLQERQKLGPFLQVMPNCCRLLNHEIRRVSS------FPDLDRYEHGSPFRSLGQ 97
Query: 92 PSNLMSNVPGTGLGGWNGLQQERLCGTPGMT-------MDWQVAPASPTSYTVRRILRLE 144
P+N + L GW+ +Q E C + + W P P V++++RL+
Sbjct: 98 PTNGKLD-----LEGWSMMQAEENCHLQRASPFRGPSPVGWIGMPGLPNPPIVKKVIRLD 152
Query: 145 IPVDTFPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGTGSIKDPDKEEKLRGKPGYEHL 204
+PVD +P++NFVGR+LGPRGNSLKRVE T CRVFIRG GS+KD KEEKL+GKPGYEHL
Sbjct: 153 VPVDKYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKDTVKEEKLKGKPGYEHL 212
Query: 205 YEPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYVKKQQLRELALLNSNLREE 264
EPLH+LIEA+LP +I++ RL A +E LLKP+DES D+ K++QL+ELA LN LREE
Sbjct: 213 CEPLHVLIEAELPEDIINSRLEHAVHFLESLLKPMDESMDHYKREQLKELAALNGTLREE 272
>AT1G09660.2 | Symbols: | RNA-binding KH domain-containing protein
| chr1:3128205-3130791 REVERSE LENGTH=264
Length = 264
Score = 211 bits (536), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 114/218 (52%), Positives = 143/218 (65%), Gaps = 20/218 (9%)
Query: 34 QYLSELLAERQKLGPFMQVLPTCNRLLNQEILRVSGMLSNQGFGDFDRLRHRSP--SPMA 91
+YL+ELL ERQKLGPF+QV+P C RLLN EI RVS F D DR H SP S
Sbjct: 44 RYLTELLQERQKLGPFLQVMPNCCRLLNHEIRRVSS------FPDLDRYEHGSPFRSLGQ 97
Query: 92 PSNLMSNVPGTGLGGWNGLQQERLCGTPGMT-------MDWQVAPASPTSYTVRRILRLE 144
P+N + L GW+ +Q E C + + W P P V++++RL+
Sbjct: 98 PTNGKLD-----LEGWSMMQAEENCHLQRASPFRGPSPVGWIGMPGLPNPPIVKKVIRLD 152
Query: 145 IPVDTFPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGTGSIKDPDKEEKLRGKPGYEHL 204
+PVD +P++NFVGR+LGPRGNSLKRVE T CRVFIRG GS+KD KEEKL+GKPGYEHL
Sbjct: 153 VPVDKYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKDTVKEEKLKGKPGYEHL 212
Query: 205 YEPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDES 242
EPLH+LIEA+LP +I++ RL A +E LLKP+ S
Sbjct: 213 CEPLHVLIEAELPEDIINSRLEHAVHFLESLLKPMVHS 250
>AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 80/125 (64%), Gaps = 10/125 (8%)
Query: 142 RLEIPVDTFPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGTGSIKDPDKEEK--LRGKP 199
+L IP+ FP +NF+G ++GPRGN+ KR+E TG ++ IRG GS+K+ ++K L+ P
Sbjct: 244 KLFIPMKEFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRHQQKKDLKYDP 303
Query: 200 GYEHLYEPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYVKKQQLRELALLNS 259
E LH+L+EA+ L A ++E+LL+PVDE + K+QQLRELA LN
Sbjct: 304 SEN---EDLHVLVEAE-----TQEALEAAAGMVEKLLQPVDEVLNEHKRQQLRELATLNG 355
Query: 260 NLREE 264
+R+E
Sbjct: 356 TIRDE 360
>AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 80/125 (64%), Gaps = 10/125 (8%)
Query: 142 RLEIPVDTFPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGTGSIKDPDKEEK--LRGKP 199
+L IP+ FP +NF+G ++GPRGN+ KR+E TG ++ IRG GS+K+ ++K L+ P
Sbjct: 244 KLFIPMKEFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRHQQKKDLKYDP 303
Query: 200 GYEHLYEPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYVKKQQLRELALLNS 259
E LH+L+EA+ L A ++E+LL+PVDE + K+QQLRELA LN
Sbjct: 304 SEN---EDLHVLVEAE-----TQEALEAAAGMVEKLLQPVDEVLNEHKRQQLRELATLNG 355
Query: 260 NLREE 264
+R+E
Sbjct: 356 TIRDE 360
>AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 80/125 (64%), Gaps = 10/125 (8%)
Query: 142 RLEIPVDTFPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGTGSIKDPDKEEK--LRGKP 199
+L IP+ FP +NF+G ++GPRGN+ KR+E TG ++ IRG GS+K+ ++K L+ P
Sbjct: 244 KLFIPMKEFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRHQQKKDLKYDP 303
Query: 200 GYEHLYEPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYVKKQQLRELALLNS 259
E LH+L+EA+ L A ++E+LL+PVDE + K+QQLRELA LN
Sbjct: 304 SEN---EDLHVLVEAE-----TQEALEAAAGMVEKLLQPVDEVLNEHKRQQLRELATLNG 355
Query: 260 NLREE 264
+R+E
Sbjct: 356 TIRDE 360