Miyakogusa Predicted Gene
- Lj1g3v2535020.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v2535020.1 tr|B9MTT8|B9MTT8_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_282601
PE=4,73.86,0,seg,NULL; DUF3411,Protein of unknown function DUF3411;
SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NU,NODE_69596_length_1218_cov_39.556652.path1.1
(334 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G08640.1 | Symbols: | Protein of unknown function (DUF3411) ... 287 9e-78
AT3G08630.1 | Symbols: | Protein of unknown function (DUF3411) ... 283 9e-77
AT5G12470.1 | Symbols: | Protein of unknown function (DUF3411) ... 88 1e-17
AT5G22790.1 | Symbols: RER1 | reticulata-related 1 | chr5:759939... 87 2e-17
AT2G37860.3 | Symbols: LCD1 | Protein of unknown function (DUF34... 86 4e-17
AT2G40400.2 | Symbols: | Protein of unknown function (DUF399 an... 77 1e-14
AT2G40400.1 | Symbols: | Protein of unknown function (DUF399 an... 77 1e-14
AT3G56140.1 | Symbols: | Protein of unknown function (DUF399 an... 75 4e-14
AT5G24690.1 | Symbols: | Protein of unknown function (DUF3411) ... 54 1e-07
>AT3G08640.1 | Symbols: | Protein of unknown function (DUF3411) |
chr3:2622992-2624005 FORWARD LENGTH=337
Length = 337
Score = 287 bits (734), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 140/229 (61%), Positives = 169/229 (73%), Gaps = 3/229 (1%)
Query: 102 WRSRVSADPQFPFKLLMEELVGVTACVVGDMATRPNFGLNELDFVFSTLVVGSILNFTLM 161
WRSRV+ADPQFPFK+LMEE+VG++ACV+GDMA+RPNFGLNELDFVFSTLVVGSILNF LM
Sbjct: 108 WRSRVAADPQFPFKVLMEEIVGLSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFVLM 167
Query: 162 YLLAP---TISSASTMPAIFSSCPNSHMFEPGAYSIVERFGTFVYKXXXXXXXXXXXXXX 218
Y+LAP T+ S+ T+P IF +CP+SHMFE G+++++ RFGT VYK
Sbjct: 168 YMLAPTAATLGSSQTLPGIFRNCPSSHMFEQGSFTVMNRFGTLVYKGMVFASVGLAAGLV 227
Query: 219 XXXISNGLILLRKKMDPGFETXXXXXXXXXXALTWAAHMGVSSNLRYQTLNGAEFVLEKS 278
ISNGLI+LRKKMDP FET +LTWA HMGVS+N RYQTLNG EF+L K
Sbjct: 228 GTAISNGLIMLRKKMDPSFETPNKPPPTVLNSLTWATHMGVSANARYQTLNGIEFLLAKV 287
Query: 279 LSPLVFKSSVFGIRLLNNVLGGMTFVMLAKFTGSQKSVGDGDEDPREKD 327
L PLVFK+SV +R NNV GGM+FV+LA+ TGSQ + +EKD
Sbjct: 288 LPPLVFKTSVIVLRCANNVAGGMSFVLLARMTGSQSVEEKTEISEKEKD 336
>AT3G08630.1 | Symbols: | Protein of unknown function (DUF3411) |
chr3:2620943-2621962 FORWARD LENGTH=339
Length = 339
Score = 283 bits (725), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 143/232 (61%), Positives = 171/232 (73%), Gaps = 3/232 (1%)
Query: 102 WRSRVSADPQFPFKLLMEELVGVTACVVGDMATRPNFGLNELDFVFSTLVVGSILNFTLM 161
WRSRV+AD QFPFK+LME LVGV+A V+GDMA+RPNFGLNELDFVFSTLVVGSILNFTLM
Sbjct: 105 WRSRVAADSQFPFKVLMEMLVGVSANVLGDMASRPNFGLNELDFVFSTLVVGSILNFTLM 164
Query: 162 YLLAPTI---SSASTMPAIFSSCPNSHMFEPGAYSIVERFGTFVYKXXXXXXXXXXXXXX 218
YLLAP+ S++ +P IF SCP+SHMFE G ++++ RFGT VYK
Sbjct: 165 YLLAPSAISHGSSNLLPGIFRSCPSSHMFEQGNFTLMNRFGTLVYKGMVFATVGLAAGLV 224
Query: 219 XXXISNGLILLRKKMDPGFETXXXXXXXXXXALTWAAHMGVSSNLRYQTLNGAEFVLEKS 278
ISNGLI+LRKK+DP FET +LTWA HMGVS+N+RYQTLNGAEF+LEKS
Sbjct: 225 GTAISNGLIMLRKKIDPSFETPNKPPPTLLNSLTWATHMGVSANVRYQTLNGAEFLLEKS 284
Query: 279 LSPLVFKSSVFGIRLLNNVLGGMTFVMLAKFTGSQKSVGDGDEDPREKDTKE 330
L PLVFK+SV +R++NNVLGGM+FV LA+ TGSQ + + E KE
Sbjct: 285 LPPLVFKTSVIALRVVNNVLGGMSFVTLARMTGSQSVEEEKKIEMSEISEKE 336
>AT5G12470.1 | Symbols: | Protein of unknown function (DUF3411) |
chr5:4044950-4047290 REVERSE LENGTH=386
Length = 386
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 102/230 (44%), Gaps = 18/230 (7%)
Query: 102 WRSRVSADPQFPFKLLMEELVGVTACVVGDMATRPNFGLNELDFVFSTLVVGSILNFTLM 161
+R R+ AD F KL ME VG+ + R NEL+ VF+ + + I +F L+
Sbjct: 158 FRERLLADDLFMAKLAMECGVGIFTKTAAEYERRRENFFNELEVVFADVAMAIIADFMLV 217
Query: 162 YLLAPTIS-------SASTMPAIFSSCPNSHM---FEPGAYSIVERFGTFVYKXXXXXXX 211
YL APT+S +A + F +CP++ +Y++++R G
Sbjct: 218 YLPAPTVSLRPPLALTAGGISKFFHNCPDNAFQVALSGTSYTLLQRLGAITRNGAKLFAV 277
Query: 212 XXXXXXXXXXISNGLILLRKKMDPGFETXXXXXXXXXXALTWAAHMGVSSNLRYQTLNGA 271
I+N I RK +D E ++ + +M VSSNLRYQ + G
Sbjct: 278 GTTSSLVGTAITNAFIKARKAVDQNSEGEVETVPIVSTSVAYGVYMAVSSNLRYQIVAGV 337
Query: 272 EFVLEKSLSPLVFKSSV------FGIRLLNNVLGGMTFVMLAKFTGSQKS 315
+ ++ L P++ + + F +R N LG + +V A+ G QKS
Sbjct: 338 --IEQRLLEPMLHQHKLALSALCFAVRTGNTFLGSLLWVDYARLIGIQKS 385
>AT5G22790.1 | Symbols: RER1 | reticulata-related 1 |
chr5:7599395-7601573 REVERSE LENGTH=433
Length = 433
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 105/228 (46%), Gaps = 18/228 (7%)
Query: 103 RSRVSADPQFPFKLLMEELVGVTACVVGDMATRPNFGLNELDFVFSTLVVGSILNFTLMY 162
R+R+ ADP F FK+ E + ++ R +E + + L+VG +++ L+
Sbjct: 207 RNRMLADPSFLFKVGTEVAIDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALVG 266
Query: 163 LLAP-------TISSASTMPAIFSSCPN--SHMFE---PGA-YSIVERFGTFVYKXXXXX 209
LLAP +++S + +C + S +FE PG +S+ +R TF YK
Sbjct: 267 LLAPYARIGKPSVASTGLFKDLKRACASLPSSVFEAERPGCKFSVNQRIATFFYKGLLYG 326
Query: 210 XXXXXXXXXXXXISNGLILLRKKMDPGFETXXXXXXXXXXALTWAAHMGVSSNLRYQTLN 269
I+N LI+ K+ E A W +G+SSN RYQ +N
Sbjct: 327 SVGFGCGLIGQGIAN-LIMTAKRSVKKSEEDVPIPPLFESAALWGVFLGLSSNARYQIIN 385
Query: 270 GAEFVLEKSLS----PLVFKSSVFGIRLLNNVLGGMTFVMLAKFTGSQ 313
G E V+E S + P+V + G+R NNV GGM FV AK +G Q
Sbjct: 386 GLERVVEGSTAAKRIPVVAMAFTVGVRFANNVYGGMQFVDWAKLSGVQ 433
>AT2G37860.3 | Symbols: LCD1 | Protein of unknown function (DUF3411)
| chr2:15856952-15858793 FORWARD LENGTH=432
Length = 432
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 21/229 (9%)
Query: 103 RSRVSADPQFPFKLLMEELVGVTACVVGDMATRPNFGLNELDFVFSTLVVGSILNFTLMY 162
R+R+ ADP F FK+ E ++ V ++ R E + + L+VG+++N L+
Sbjct: 207 RNRMLADPSFLFKIGAEIVIDSCCATVAEVQKRGKDFWAEFELYVADLLVGTVVNIALVG 266
Query: 163 LLAPTIS----SAS-----TMPAIFSSCPNSHMFE---PGA-YSIVERFGTFVYKXXXXX 209
+LAP + SAS M +++ P+S +FE PG +S +R T+ YK
Sbjct: 267 MLAPYVRFGQPSASPGFLGRMVFAYNALPSS-VFEAERPGCRFSAQQRLATYFYKGIMYG 325
Query: 210 XXXXXXXXXXXXISNGLILLRKKMDPGFETXXXXXXXXXXALTWAAHMGVSSNLRYQTLN 269
I+N ++ ++ ++ E AL W + VSSN RYQ +N
Sbjct: 326 AVGFGCGIVGQGIANLIMTAKRNINKSEENIPVPPLIKSAAL-WGVFLSVSSNTRYQIIN 384
Query: 270 GAEFVLE-----KSLSPLVFKSSVFGIRLLNNVLGGMTFVMLAKFTGSQ 313
G E V+E K P +V G+RL NN+ GGM FV A+ +G Q
Sbjct: 385 GLERVVEASPFAKKFPPAAMAFTV-GVRLANNIYGGMQFVDWARLSGCQ 432
>AT2G40400.2 | Symbols: | Protein of unknown function (DUF399 and
DUF3411) | chr2:16869363-16872569 FORWARD LENGTH=735
Length = 735
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 108/245 (44%), Gaps = 24/245 (9%)
Query: 102 WRSRVSADPQFPFKLLMEELVGVTACVVGDMATRPNFGLNELDFVFSTLVVGSILNFTLM 161
+R R+ ADP+F +L +EE + +T +V R ELD+V + V S+++F +
Sbjct: 468 FRERLLADPKFLNRLAIEEAISITTTLVAQYEKRKENFFEELDYVITDSVRASVVDFFTV 527
Query: 162 YLLAPTIS------------SASTMPAIFSSCPNSHMFEPG----AYSIVERFGTFVYKX 205
+L APT+S S + + S P+ + F+ +++ R + +
Sbjct: 528 WLPAPTLSFISYADETIGPNSIDALRGLLGSIPD-NAFQKSLGGQEWTLSLRIASVIIGG 586
Query: 206 XXXXXXXXXXXXXXXXISNGLILLRKKMDP--GFETXXXXXXXXXXALTWAAHMGVSSNL 263
SN L +RK + P G AL + ++G SSN+
Sbjct: 587 LKLAGVGVVSSFAAVGSSNALYAIRKFIKPELGVGEQAKRSPMLKTALVYGGYLGTSSNI 646
Query: 264 RYQTLNG-AEFVLEKSLS--PLVFKSSVFGIRLLNNVLGGMTFVMLAKFTG--SQKSVGD 318
RYQ + G E + LS PL+ F +R+ N+ G ++ LA+ TG +QKSV
Sbjct: 647 RYQIIAGLIEHRISDELSSQPLLVNMISFVVRVANSYFGTQQWIDLARSTGLQTQKSVTT 706
Query: 319 GDEDP 323
++ P
Sbjct: 707 SNQIP 711
>AT2G40400.1 | Symbols: | Protein of unknown function (DUF399 and
DUF3411) | chr2:16869363-16872569 FORWARD LENGTH=735
Length = 735
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 108/245 (44%), Gaps = 24/245 (9%)
Query: 102 WRSRVSADPQFPFKLLMEELVGVTACVVGDMATRPNFGLNELDFVFSTLVVGSILNFTLM 161
+R R+ ADP+F +L +EE + +T +V R ELD+V + V S+++F +
Sbjct: 468 FRERLLADPKFLNRLAIEEAISITTTLVAQYEKRKENFFEELDYVITDSVRASVVDFFTV 527
Query: 162 YLLAPTIS------------SASTMPAIFSSCPNSHMFEPG----AYSIVERFGTFVYKX 205
+L APT+S S + + S P+ + F+ +++ R + +
Sbjct: 528 WLPAPTLSFISYADETIGPNSIDALRGLLGSIPD-NAFQKSLGGQEWTLSLRIASVIIGG 586
Query: 206 XXXXXXXXXXXXXXXXISNGLILLRKKMDP--GFETXXXXXXXXXXALTWAAHMGVSSNL 263
SN L +RK + P G AL + ++G SSN+
Sbjct: 587 LKLAGVGVVSSFAAVGSSNALYAIRKFIKPELGVGEQAKRSPMLKTALVYGGYLGTSSNI 646
Query: 264 RYQTLNG-AEFVLEKSLS--PLVFKSSVFGIRLLNNVLGGMTFVMLAKFTG--SQKSVGD 318
RYQ + G E + LS PL+ F +R+ N+ G ++ LA+ TG +QKSV
Sbjct: 647 RYQIIAGLIEHRISDELSSQPLLVNMISFVVRVANSYFGTQQWIDLARSTGLQTQKSVTT 706
Query: 319 GDEDP 323
++ P
Sbjct: 707 SNQIP 711
>AT3G56140.1 | Symbols: | Protein of unknown function (DUF399 and
DUF3411) | chr3:20829407-20832669 FORWARD LENGTH=745
Length = 745
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 105/237 (44%), Gaps = 22/237 (9%)
Query: 102 WRSRVSADPQFPFKLLMEELVGVTACVVGDMATRPNFGLNELDFVFSTLVVGSILNFTLM 161
+R R+ ADP+F +L +EE + +T ++ R E+D+V + V GS+++F +
Sbjct: 477 FRERLLADPKFLNRLAIEEAISITTTLIAQYEKRKENFFEEIDYVITDTVRGSVVDFFTV 536
Query: 162 YLLAPTIS------------SASTMPAIFSSCPNSHMFEPGA---YSIVERFGTFVYKXX 206
+L APT+S S + + S P++ + A +++ R + +
Sbjct: 537 WLPAPTLSFLSYADETTGPDSIDALRGLLGSIPDNAFQKSLAGREWNLNLRIASVIVGGL 596
Query: 207 XXXXXXXXXXXXXXXISNGLILLRKKMDPGFETXXXXXXX--XXXALTWAAHMGVSSNLR 264
SN L + RK + P A+ + +G S+NLR
Sbjct: 597 KLAGVGVVSSFAAVGASNALNIARKVIKPELVVAEKPKRSPLLKTAMVYGGFLGTSANLR 656
Query: 265 YQTLNG-AEFVLEKSLS--PLVFKSSVFGIRLLNNVLGGMTFVMLAKFTG--SQKSV 316
YQ + G E L LS PL+ + F +R LN+ G ++ LA+ TG +QKS+
Sbjct: 657 YQIIAGLIEHRLSDELSSQPLLVNAISFVVRTLNSYFGTQQWIDLARSTGLQTQKSI 713
>AT5G24690.1 | Symbols: | Protein of unknown function (DUF3411) |
chr5:8455783-8458513 REVERSE LENGTH=521
Length = 521
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 73/176 (41%), Gaps = 14/176 (7%)
Query: 105 RVSADPQFPFKLLMEELVGVTACVVGDMATRPNFGLNELDFVFSTLVVGSILNFTLMYLL 164
R+ ADP F +KLL+E+ V V ++ R N E D ++ S N ++LL
Sbjct: 240 RMLADPAFLYKLLLEQAATVGCSVWWEVKNRKNRLKEEWDLALINVLTVSACNAAAVWLL 299
Query: 165 APTISSAST----MPAIFSSCPNSHMFEPG----AYSIVERFGTFVYKXXXXXXXXXXXX 216
AP S +T + PN ++FE + + +RF + YK
Sbjct: 300 APCRSYGNTFRFDLQNTLQKLPN-NLFEMSYPLREFDLQKRFHSLFYKAAELSILGLAAG 358
Query: 217 XXXXXISNGLILLRKKMDPGFETXXXXXXXXXXALTWAAHMGVSSNLRYQTLNGAE 272
+SN +L KK + AL + A +G+ +NLRYQ L G E
Sbjct: 359 TLQGSLSN--VLAGKKKN---RVSVTVPSISTNALGYGAFLGIYANLRYQLLCGFE 409