Miyakogusa Predicted Gene

Lj1g3v2534980.1
Show Alignment: 
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2534980.1 tr|B9HFB2|B9HFB2_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_820063 PE=4
SV=1,76.19,4e-17,seg,NULL,NODE_62345_length_361_cov_79.789474.path1.1
         (63 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G51010.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    46   6e-06

>AT3G51010.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: mitochondrion,
           plastid; EXPRESSED IN: 22 plant structures; EXPRESSED
           DURING: 13 growth stages; Has 24 Blast hits to 24
           proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa
           - 0; Fungi - 0; Plants - 24; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr3:18946880-18948048 REVERSE LENGTH=188
          Length = 188

 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/33 (72%), Positives = 29/33 (87%)

Query: 3   QHRAFILAERKKRKAQMQEANRKKSIKRVERKM 35
           Q RAFIL+E+KKR+A +QEA RKK IK+VERKM
Sbjct: 127 QRRAFILSEKKKRQALVQEAKRKKRIKQVERKM 159