Miyakogusa Predicted Gene
- Lj1g3v2534980.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v2534980.1 tr|B9HFB2|B9HFB2_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_820063 PE=4
SV=1,76.19,4e-17,seg,NULL,NODE_62345_length_361_cov_79.789474.path1.1
(63 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G51010.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 46 6e-06
>AT3G51010.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: mitochondrion,
plastid; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 24 Blast hits to 24
proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 24; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). |
chr3:18946880-18948048 REVERSE LENGTH=188
Length = 188
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/33 (72%), Positives = 29/33 (87%)
Query: 3 QHRAFILAERKKRKAQMQEANRKKSIKRVERKM 35
Q RAFIL+E+KKR+A +QEA RKK IK+VERKM
Sbjct: 127 QRRAFILSEKKKRQALVQEAKRKKRIKQVERKM 159