Miyakogusa Predicted Gene

Lj1g3v2534970.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2534970.1 tr|Q75IM4|Q75IM4_ORYSJ Os05g0126200 protein
OS=Oryza sativa subsp. japonica GN=P0683F12.6 PE=2
SV=1,68.18,2e-17,seg,NULL,NODE_10642_length_500_cov_106.054001.path1.1
         (122 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G51010.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    87   3e-18

>AT3G51010.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: mitochondrion,
           plastid; EXPRESSED IN: 22 plant structures; EXPRESSED
           DURING: 13 growth stages; Has 24 Blast hits to 24
           proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa
           - 0; Fungi - 0; Plants - 24; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr3:18946880-18948048 REVERSE LENGTH=188
          Length = 188

 Score = 87.0 bits (214), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/133 (42%), Positives = 68/133 (51%), Gaps = 13/133 (9%)

Query: 1   MGFIGALRNIIRPXXXXXXXXXXXXXXXNPTIALFSTSLASPCK---------QPQWLFP 51
           MGF GA+R+I+RP                P  A    +    C          +  W+ P
Sbjct: 1   MGF-GAIRSILRPLSRTLVSRAVVNYSSAPFNATIPAAKPELCSFFGGSMTHLRLPWI-P 58

Query: 52  LRNHFHSL--TDTXXXXXXXXXXXXXXXASLRPPGPYAWVQYTPGEPILPNKPNEGSVKR 109
           + NHFHSL  TDT               + L+PPGPYA+VQYTPG+PI  N PNEGSVKR
Sbjct: 59  MANHFHSLSLTDTRLPKRRPMTHPKRKRSKLKPPGPYAYVQYTPGQPISSNNPNEGSVKR 118

Query: 110 RNEKKRMRQHRAF 122
           RN KKR+ Q RAF
Sbjct: 119 RNAKKRIGQRRAF 131