Miyakogusa Predicted Gene

Lj1g3v2471300.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2471300.1 tr|F4XYZ9|F4XYZ9_9CYAN PRC-barrel domain protein
OS=Moorea producens 3L GN=LYNGBM3L_53180 PE=4 SV=1,35.03,2e-18,no
description,NULL; seg,NULL; PRC-barrel
domain,PRC-barrel-like,CUFF.29044.1
         (382 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G38570.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: PRC-barrel...   204   1e-52

>AT2G38570.1 | Symbols:  | CONTAINS InterPro DOMAIN/s:
           PRC-barrel-like (InterPro:IPR011033); Has 300 Blast hits
           to 300 proteins in 81 species: Archae - 0; Bacteria -
           135; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0;
           Other Eukaryotes - 128 (source: NCBI BLink). |
           chr2:16136854-16138417 REVERSE LENGTH=328
          Length = 328

 Score =  204 bits (518), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 113/214 (52%), Positives = 141/214 (65%), Gaps = 12/214 (5%)

Query: 116 GKRETHLGEDDDLVKVQGDEDGGVDLREDDQVXXXXXXXXXXXQMIRRSNLLAKQVISVR 175
           G     L  + DLV++ GD D  +                   Q   RSNL+AKQV+S++
Sbjct: 85  GSDSVELPGESDLVRLVGDNDLSI------------TGSRGFKQSTTRSNLVAKQVVSIQ 132

Query: 176 SALSLGFVSQLWVDTTSWMVLFVEVRPNLLSGDSEIFLLEDISQVGDVILVQDESVIDTE 235
           SALSLGF+SQLWVDTTSW+VL V+V+P+LLSG+SE FLL DI +VGDV+LV +E+V+DTE
Sbjct: 133 SALSLGFISQLWVDTTSWLVLVVDVKPSLLSGESERFLLTDIVRVGDVVLVDNETVLDTE 192

Query: 236 YKMIRLETLVGYKVVTSSQRNIGKVRGYNFSINSGAVEELEIDSFGLSIIPSSLVSTYXX 295
           +KM+ LETLVGY+VVT   RNIGKVRGY+F+INSG VE LE+DSFG++IIPSSLVSTY  
Sbjct: 193 FKMVGLETLVGYRVVTPGGRNIGKVRGYSFNINSGIVESLELDSFGVTIIPSSLVSTYRL 252

Query: 296 XXXXXXXXXXXXXXXXXXXXLRIQRLSKGFLGNQ 329
                                R QRL+KG    Q
Sbjct: 253 DVEDIIEVLQDIVVVQEDAASRKQRLTKGLWDAQ 286