Miyakogusa Predicted Gene

Lj1g3v2446010.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2446010.1 Non Chatacterized Hit- tr|B6TFZ3|B6TFZ3_MAIZE
Putative uncharacterized protein OS=Zea mays PE=2 SV=1,41.98,3e-19,no
description,Helix-loop-helix domain; coiled-coil,NULL,CUFF.29025.1
         (150 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G40435.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...   145   9e-36
AT3G56220.1 | Symbols:  | transcription regulators | chr3:208589...   124   3e-29
AT1G29270.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    49   2e-06

>AT2G40435.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: transcription regulators (TAIR:AT3G56220.1); Has 289
           Blast hits to 289 proteins in 30 species: Archae - 0;
           Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 289;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr2:16887048-16888407 FORWARD LENGTH=158
          Length = 158

 Score =  145 bits (366), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 76/148 (51%), Positives = 103/148 (69%), Gaps = 1/148 (0%)

Query: 1   MGSRERRRVALQHTLQQLRDATNSSAVNKASIIADASKYIEELKQKVEDLNSELGVTESS 60
           M SRE++R +LQ   Q LR  TNS A N  SII DASKYI++LKQKVE  N +    +SS
Sbjct: 1   MVSREQKRGSLQEKFQLLRSITNSHAENDTSIIMDASKYIQKLKQKVERFNQDPTAEQSS 60

Query: 61  TTQID-ELPMVSVKTLEKGFLIQVLLEKSCPGMLVSILEAFEELQLDVIDARASCEDTFQ 119
           +   D + PMV+V+TL+KGF+I V   K+ PGMLVS+LEAFE++ L+V++ARASC D+F 
Sbjct: 61  SEPTDPKTPMVTVETLDKGFMINVFSGKNQPGMLVSVLEAFEDIGLNVLEARASCTDSFS 120

Query: 120 LETVARESHKKHSVNAHVVKEAVLQAIR 147
           L  +  E+    +++A  VK+AV  AIR
Sbjct: 121 LHAMGLENEDGENMDAEAVKQAVTDAIR 148


>AT3G56220.1 | Symbols:  | transcription regulators |
           chr3:20858941-20860302 FORWARD LENGTH=156
          Length = 156

 Score =  124 bits (310), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 70/149 (46%), Positives = 98/149 (65%), Gaps = 2/149 (1%)

Query: 1   MGSRERRR-VALQHTLQQLRDATNSSAVNKASIIADASKYIEELKQKVEDLNSELGVTES 59
           M SRE +R  +L+     LR  T+S A ++ SII DASKYI++LKQKVE +N+     +S
Sbjct: 1   MVSREHKRGSSLREKFHLLRSITDSHAESETSIIVDASKYIKKLKQKVEKINNATTSEQS 60

Query: 60  STTQIDELPMVSVKTLEKGFLIQVLLEKSCPGMLVSILEAFEELQLDVIDARASCEDTFQ 119
                D  PMV+V+TLEKGF+I+V+  K+  GMLV +LE FE+L LDV++AR SC DTF 
Sbjct: 61  FRESSDPNPMVTVETLEKGFMIKVMSRKNEAGMLVCVLETFEDLGLDVVEARVSCTDTFS 120

Query: 120 LETVARESHKK-HSVNAHVVKEAVLQAIR 147
           L  +   ++     ++A  VK+AV +AIR
Sbjct: 121 LHAIGSSNNDDGDCIDAEAVKQAVAEAIR 149


>AT1G29270.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT2G40435.1); Has 98 Blast hits to 98 proteins in
           15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr1:10230140-10231021 FORWARD
           LENGTH=155
          Length = 155

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 72/131 (54%), Gaps = 14/131 (10%)

Query: 1   MGSRERRRVALQHTLQQLRDATNS--SAVNKASIIADASKYIEELKQKVEDLNSE---LG 55
           M + E+++ A Q     L++ T+   S   ++ +I +A  YI  LK ++E L  E   L 
Sbjct: 1   MVASEQKKRASQGKPHFLKNLTHFKFSIHEQSMVIREALLYIAMLKLEIEALQREYEDLK 60

Query: 56  VTES-STTQIDELPMVSVKTLEKGFLIQVLLEKSCPG--MLVSILEAFEELQLDVIDARA 112
           +T+  S  Q  E     VK  + G + QV + KS  G   LV+ILEAFEE+ L+V  ARA
Sbjct: 61  ITKKESLHQFQE-----VKVEKIGEMFQVKI-KSPRGENNLVNILEAFEEMGLNVAQARA 114

Query: 113 SCEDTFQLETV 123
           SC D+F +E +
Sbjct: 115 SCLDSFAMEAI 125