Miyakogusa Predicted Gene

Lj1g3v2443930.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2443930.1 tr|G7I4N4|G7I4N4_MEDTR Serine/threonine protein
kinase Nek9 OS=Medicago truncatula GN=MTR_1g042800
P,57.28,6e-18,BRX,Brevis radix-like domain; HYPOTHETICAL PROTEIN,NULL;
REGULATOR OF CHROMOSOME CONDENSATION,NULL; ,CUFF.29019.1
         (109 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G76950.1 | Symbols: PRAF1 | Regulator of chromosome condensat...    55   1e-08
AT5G42140.1 | Symbols:  | Regulator of chromosome condensation (...    52   8e-08
AT3G23270.1 | Symbols:  | Regulator of chromosome condensation (...    51   2e-07

>AT1G76950.1 | Symbols: PRAF1 | Regulator of chromosome condensation
            (RCC1) family with FYVE zinc finger domain |
            chr1:28906952-28911325 FORWARD LENGTH=1103
          Length = 1103

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query: 22   ETEVTEQFEPGVYVTLVVKPDGNXXXXXXXXXXXXXHAHQAEEWWNRNKDQVFRKYSTQ 80
            E E  EQ+EPGVY+TLV   DG                HQAE WW+ N+++V+ KY+ +
Sbjct: 1022 EAEWIEQYEPGVYITLVALHDGTRDLRRVRFSRRRFGEHQAETWWSENREKVYEKYNVR 1080


>AT5G42140.1 | Symbols:  | Regulator of chromosome condensation (RCC1)
            family with FYVE zinc finger domain |
            chr5:16837547-16841640 REVERSE LENGTH=1073
          Length = 1073

 Score = 52.0 bits (123), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 32/59 (54%)

Query: 22   ETEVTEQFEPGVYVTLVVKPDGNXXXXXXXXXXXXXHAHQAEEWWNRNKDQVFRKYSTQ 80
            E E  EQ+EPGVY+TL+   DG                 QAE WW+ N+++V+ KY+ +
Sbjct: 998  EAEWIEQYEPGVYITLLALGDGTRDLKRVRFSRRRFREQQAETWWSENRERVYEKYNIR 1056


>AT3G23270.1 | Symbols:  | Regulator of chromosome condensation (RCC1)
            family with FYVE zinc finger domain |
            chr3:8316436-8320337 FORWARD LENGTH=1045
          Length = 1045

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 30/54 (55%)

Query: 24   EVTEQFEPGVYVTLVVKPDGNXXXXXXXXXXXXXHAHQAEEWWNRNKDQVFRKY 77
            E  EQFEPGVYVT  V  +GN               HQAE+WW +NKD++ + Y
Sbjct: 949  ESKEQFEPGVYVTYEVDMNGNKIFRRVRFSKKRFDEHQAEDWWTKNKDRLLKCY 1002