Miyakogusa Predicted Gene

Lj1g3v2432910.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2432910.1 tr|B9IGN9|B9IGN9_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_778006 PE=4
SV=1,45.99,1e-17,seg,NULL,CUFF.29032.1
         (365 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G38410.1 | Symbols:  | ENTH/VHS/GAT family protein | chr2:160...    59   5e-09

>AT2G38410.1 | Symbols:  | ENTH/VHS/GAT family protein |
           chr2:16086912-16090047 REVERSE LENGTH=671
          Length = 671

 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 300 GDPVASSGQSNPPNATGQRPFVPSYRLFEDLNVFGNTDGR 339
           GDP A+S  SN   + GQ+PFVPSYRLFEDL+VFG+ DG+
Sbjct: 602 GDPQATSTASNSGVSVGQKPFVPSYRLFEDLDVFGSADGK 641