Miyakogusa Predicted Gene

Lj1g3v2418700.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2418700.1 tr|G7KW01|G7KW01_MEDTR D-alanine--D-alanine
ligase OS=Medicago truncatula GN=MTR_7g071990 PE=4
SV=1,82.79,0,SUBFAMILY NOT NAMED,NULL; D-ALANINE--D-ALANINE
LIGASE,D-alanine--D-alanine ligase; PreATP-grasp doma,CUFF.29126.1
         (942 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G08840.2 | Symbols:  | D-alanine--D-alanine ligase family | c...  1186   0.0  
AT3G08840.3 | Symbols:  | D-alanine--D-alanine ligase family | c...  1032   0.0  
AT3G08840.1 | Symbols:  | D-alanine--D-alanine ligase family | c...   591   e-169

>AT3G08840.2 | Symbols:  | D-alanine--D-alanine ligase family |
           chr3:2679648-2686157 REVERSE LENGTH=937
          Length = 937

 Score = 1186 bits (3069), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 580/861 (67%), Positives = 704/861 (81%), Gaps = 17/861 (1%)

Query: 81  RVLKVGSARSVLDHLQGDDIHVSCYYIDINLNAFAISSAQVYSNTPADFDFKLESLAQSF 140
           R + + SARSVLDH+QGD I+VSCYYID +L AFAISSAQVYSNTP+DFDFKLESLAQ F
Sbjct: 91  RGISLNSARSVLDHIQGDGINVSCYYIDPDLKAFAISSAQVYSNTPSDFDFKLESLAQGF 150

Query: 141 STLDDMAEHLATSVDIVFPVIHGQFGEDGRIQELLEKYNVPYVGTGSKECCQAFDKYKAS 200
           S+L ++AEHL ++VDIVFPVIHG+FGEDG IQELLE +N+P+VGTGS+EC +AFDKY+AS
Sbjct: 151 SSLSELAEHLVSAVDIVFPVIHGRFGEDGGIQELLESHNIPFVGTGSRECFRAFDKYEAS 210

Query: 201 LELRQHGFVTVPSFLVQGHKTDKSELSEWFRKHQLDPDLGKVVVKPTRGGSSIGVGVAYG 260
           LEL++ GF+TVP++LVQG   DKSE++ WF  +QLD ++GKVVVKP + GSSIGV VA+G
Sbjct: 211 LELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKAGSSIGVKVAFG 270

Query: 261 VNDSLVKANEIMTEGIDNKVLIEIFLEGGSEFTAIVLDVGSGSDCCPVVLLPTEVELQFL 320
           VNDS+ KA E++ EGID++V++E+F+E   EFTAIVLDVGSGS C PVVL+PTEV+LQF 
Sbjct: 271 VNDSIKKATELILEGIDDRVVVEVFIEDAYEFTAIVLDVGSGSVCHPVVLMPTEVQLQFH 330

Query: 321 GANDVKENDAIFNYRRKYLPTQQVAYHTPPRFPLDVIDNIRKGASLIFQRLCLQDFARID 380
           G  D KEN AIF+YRRKYLPTQQV YHTPPRFP+ VI +IR+ ASLIFQ+L L+DFARID
Sbjct: 331 GIGDPKEN-AIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREEASLIFQKLGLRDFARID 389

Query: 381 GWFL-PNSDSKLSCSENEFGRTEAGTILFTDINLISGMEQTSFLFQQASKVGFSHKNILR 439
           GW+L PNS+     SE   G T++G I+FTDINLISGMEQTSFLFQQASKVGFSH NILR
Sbjct: 390 GWYLAPNSNLSSPVSET-LGGTKSGDIIFTDINLISGMEQTSFLFQQASKVGFSHSNILR 448

Query: 440 SVVRHACLRFPNLPSESGISAQVPTRSKSFELNKAFPFPEGARKVFVIFGGDTSERQVSL 499
           ++V  AC RFP+L   +   +Q+   S + E++      E  +KVFVIFGGDTSERQVS+
Sbjct: 449 TIVHRACSRFPHLDWYNYGYSQLLQGSTTLEVS------EDPQKVFVIFGGDTSERQVSV 502

Query: 500 MSGTNVWLNLLAFHDLEVTPFLLASTSECESNVDMVKKADDVRDRTIWSLPYSLVLRHTT 559
           MSGTNVW+NL  + DL VTP LL+ +            + ++ +R +W LPYS+VLRHT 
Sbjct: 503 MSGTNVWVNLQRYVDLNVTPCLLSPSLSNSLGA-----SSNLDNREVWVLPYSVVLRHTA 557

Query: 560 EEVLAACKEAIEPDRAALTSNLRKKVVNELMEGLKDHNWFTGFDIADELPMKFSLRLWIK 619
           EEVLAAC EA+EP RA  TS L+K+V+ +LM+G K+ +WF GFDI DELP K+SL+ WIK
Sbjct: 558 EEVLAACLEAVEPVRALFTSLLQKQVMEDLMDGFKNQSWFAGFDITDELPRKYSLKEWIK 617

Query: 620 SAKEVQATVFIAVHGGIGEDGTLQSLLDAEGVPYTGPGAMASKICMDKVATSVALKHLAN 679
            AKE QATVFIAVHGGIGEDGTLQ LL+ EGV YTGPG +AS+ CMDKV TS AL +L+ 
Sbjct: 618 HAKEAQATVFIAVHGGIGEDGTLQGLLEDEGVSYTGPGVLASRTCMDKVMTSQALSNLSE 677

Query: 680 FGVLTINKDVRRKDDLFDKPITDIWHDLTQKLQCETLCVKPARDGCSTGVARLCCSDDLA 739
           FG+ TI+KDV+R +D+  +   ++W +L +KLQC TLCVKPA+DGCSTGVARLC S+DLA
Sbjct: 678 FGIHTISKDVKRTEDIMHETFPNVWDELIKKLQCLTLCVKPAKDGCSTGVARLCSSEDLA 737

Query: 740 IYVKALEDCLLRIPPNSFSKAHSIIEMPNPPPELLIFEPFIETDEIVVTSKFKETGHDLM 799
           +YV+AL+DC+ RIPPN+ SK H +IEMPNP PE LIFEPF+ETDEI+V+SK K+    L 
Sbjct: 738 VYVQALKDCIPRIPPNTLSKTHGMIEMPNPTPEFLIFEPFVETDEIIVSSKAKQ---QLS 794

Query: 800 WKGHSRWVEITVGVIGKRGSMHSLSPSVTVKETGDILSLEEKFQGGTGINLTPPPLSIMS 859
           WKG  RWVE+TVGVIGKRGSMHSLSPS+TVKE+GDILSLEEKFQGGTGINLTPPP +IMS
Sbjct: 795 WKGRRRWVEMTVGVIGKRGSMHSLSPSLTVKESGDILSLEEKFQGGTGINLTPPPPTIMS 854

Query: 860 EKALQRCKKHIEQIANTLQLEGFSRIDAFVNVDNGEVLIIEINTVPGMTPSTVLIHQALA 919
           ++AL+RCK+ IE IA TL LEGFSRIDAFV+V+ GEVL+IE+NTVPGMTPSTVLI QALA
Sbjct: 855 KEALERCKQGIELIAETLGLEGFSRIDAFVHVETGEVLVIEVNTVPGMTPSTVLIQQALA 914

Query: 920 EQPPLYPHQFFRTLLDLGSVR 940
           EQPP+YP QFFRTLL L + R
Sbjct: 915 EQPPMYPPQFFRTLLHLATQR 935


>AT3G08840.3 | Symbols:  | D-alanine--D-alanine ligase family |
           chr3:2680568-2686157 REVERSE LENGTH=845
          Length = 845

 Score = 1032 bits (2669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/764 (66%), Positives = 618/764 (80%), Gaps = 17/764 (2%)

Query: 81  RVLKVGSARSVLDHLQGDDIHVSCYYIDINLNAFAISSAQVYSNTPADFDFKLESLAQSF 140
           R + + SARSVLDH+QGD I+VSCYYID +L AFAISSAQVYSNTP+DFDFKLESLAQ F
Sbjct: 91  RGISLNSARSVLDHIQGDGINVSCYYIDPDLKAFAISSAQVYSNTPSDFDFKLESLAQGF 150

Query: 141 STLDDMAEHLATSVDIVFPVIHGQFGEDGRIQELLEKYNVPYVGTGSKECCQAFDKYKAS 200
           S+L ++AEHL ++VDIVFPVIHG+FGEDG IQELLE +N+P+VGTGS+EC +AFDKY+AS
Sbjct: 151 SSLSELAEHLVSAVDIVFPVIHGRFGEDGGIQELLESHNIPFVGTGSRECFRAFDKYEAS 210

Query: 201 LELRQHGFVTVPSFLVQGHKTDKSELSEWFRKHQLDPDLGKVVVKPTRGGSSIGVGVAYG 260
           LEL++ GF+TVP++LVQG   DKSE++ WF  +QLD ++GKVVVKP + GSSIGV VA+G
Sbjct: 211 LELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKAGSSIGVKVAFG 270

Query: 261 VNDSLVKANEIMTEGIDNKVLIEIFLEGGSEFTAIVLDVGSGSDCCPVVLLPTEVELQFL 320
           VNDS+ KA E++ EGID++V++E+F+E   EFTAIVLDVGSGS C PVVL+PTEV+LQF 
Sbjct: 271 VNDSIKKATELILEGIDDRVVVEVFIEDAYEFTAIVLDVGSGSVCHPVVLMPTEVQLQFH 330

Query: 321 GANDVKENDAIFNYRRKYLPTQQVAYHTPPRFPLDVIDNIRKGASLIFQRLCLQDFARID 380
           G  D KEN AIF+YRRKYLPTQQV YHTPPRFP+ VI +IR+ ASLIFQ+L L+DFARID
Sbjct: 331 GIGDPKEN-AIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREEASLIFQKLGLRDFARID 389

Query: 381 GWFL-PNSDSKLSCSENEFGRTEAGTILFTDINLISGMEQTSFLFQQASKVGFSHKNILR 439
           GW+L PNS+     SE   G T++G I+FTDINLISGMEQTSFLFQQASKVGFSH NILR
Sbjct: 390 GWYLAPNSNLSSPVSET-LGGTKSGDIIFTDINLISGMEQTSFLFQQASKVGFSHSNILR 448

Query: 440 SVVRHACLRFPNLPSESGISAQVPTRSKSFELNKAFPFPEGARKVFVIFGGDTSERQVSL 499
           ++V  AC RFP+L   +   +Q+   S + E++      E  +KVFVIFGGDTSERQVS+
Sbjct: 449 TIVHRACSRFPHLDWYNYGYSQLLQGSTTLEVS------EDPQKVFVIFGGDTSERQVSV 502

Query: 500 MSGTNVWLNLLAFHDLEVTPFLLASTSECESNVDMVKKADDVRDRTIWSLPYSLVLRHTT 559
           MSGTNVW+NL  + DL VTP LL+ +            + ++ +R +W LPYS+VLRHT 
Sbjct: 503 MSGTNVWVNLQRYVDLNVTPCLLSPSLSNSLGA-----SSNLDNREVWVLPYSVVLRHTA 557

Query: 560 EEVLAACKEAIEPDRAALTSNLRKKVVNELMEGLKDHNWFTGFDIADELPMKFSLRLWIK 619
           EEVLAAC EA+EP RA  TS L+K+V+ +LM+G K+ +WF GFDI DELP K+SL+ WIK
Sbjct: 558 EEVLAACLEAVEPVRALFTSLLQKQVMEDLMDGFKNQSWFAGFDITDELPRKYSLKEWIK 617

Query: 620 SAKEVQATVFIAVHGGIGEDGTLQSLLDAEGVPYTGPGAMASKICMDKVATSVALKHLAN 679
            AKE QATVFIAVHGGIGEDGTLQ LL+ EGV YTGPG +AS+ CMDKV TS AL +L+ 
Sbjct: 618 HAKEAQATVFIAVHGGIGEDGTLQGLLEDEGVSYTGPGVLASRTCMDKVMTSQALSNLSE 677

Query: 680 FGVLTINKDVRRKDDLFDKPITDIWHDLTQKLQCETLCVKPARDGCSTGVARLCCSDDLA 739
           FG+ TI+KDV+R +D+  +   ++W +L +KLQC TLCVKPA+DGCSTGVARLC S+DLA
Sbjct: 678 FGIHTISKDVKRTEDIMHETFPNVWDELIKKLQCLTLCVKPAKDGCSTGVARLCSSEDLA 737

Query: 740 IYVKALEDCLLRIPPNSFSKAHSIIEMPNPPPELLIFEPFIETDEIVVTSKFKETGHDLM 799
           +YV+AL+DC+ RIPPN+ SK H +IEMPNP PE LIFEPF+ETDEI+V+SK K+    L 
Sbjct: 738 VYVQALKDCIPRIPPNTLSKTHGMIEMPNPTPEFLIFEPFVETDEIIVSSKAKQ---QLS 794

Query: 800 WKGHSRWVEITVGVIGKRGSMHSLSPSVTVKETGDILSLEEKFQ 843
           WKG  RWVE+TVGVIGKRGSMHSLSPS+TVKE+GDILSLEEKFQ
Sbjct: 795 WKGRRRWVEMTVGVIGKRGSMHSLSPSLTVKESGDILSLEEKFQ 838


>AT3G08840.1 | Symbols:  | D-alanine--D-alanine ligase family |
           chr3:2682611-2686157 REVERSE LENGTH=519
          Length = 519

 Score =  591 bits (1523), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 292/436 (66%), Positives = 358/436 (82%), Gaps = 9/436 (2%)

Query: 81  RVLKVGSARSVLDHLQGDDIHVSCYYIDINLNAFAISSAQVYSNTPADFDFKLESLAQSF 140
           R + + SARSVLDH+QGD I+VSCYYID +L AFAISSAQVYSNTP+DFDFKLESLAQ F
Sbjct: 91  RGISLNSARSVLDHIQGDGINVSCYYIDPDLKAFAISSAQVYSNTPSDFDFKLESLAQGF 150

Query: 141 STLDDMAEHLATSVDIVFPVIHGQFGEDGRIQELLEKYNVPYVGTGSKECCQAFDKYKAS 200
           S+L ++AEHL ++VDIVFPVIHG+FGEDG IQELLE +N+P+VGTGS+EC +AFDKY+AS
Sbjct: 151 SSLSELAEHLVSAVDIVFPVIHGRFGEDGGIQELLESHNIPFVGTGSRECFRAFDKYEAS 210

Query: 201 LELRQHGFVTVPSFLVQGHKTDKSELSEWFRKHQLDPDLGKVVVKPTRGGSSIGVGVAYG 260
           LEL++ GF+TVP++LVQG   DKSE++ WF  +QLD ++GKVVVKP + GSSIGV VA+G
Sbjct: 211 LELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKAGSSIGVKVAFG 270

Query: 261 VNDSLVKANEIMTEGIDNKVLIEIFLEGGSEFTAIVLDVGSGSDCCPVVLLPTEVELQFL 320
           VNDS+ KA E++ EGID++V++E+F+E   EFTAIVLDVGSGS C PVVL+PTEV+LQF 
Sbjct: 271 VNDSIKKATELILEGIDDRVVVEVFIEDAYEFTAIVLDVGSGSVCHPVVLMPTEVQLQFH 330

Query: 321 GANDVKENDAIFNYRRKYLPTQQVAYHTPPRFPLDVIDNIRKGASLIFQRLCLQDFARID 380
           G  D KEN AIF+YRRKYLPTQQV YHTPPRFP+ VI +IR+ ASLIFQ+L L+DFARID
Sbjct: 331 GIGDPKEN-AIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREEASLIFQKLGLRDFARID 389

Query: 381 GWFL-PNSDSKLSCSENEFGRTEAGTILFTDINLISGMEQTSFLFQQASKVGFSHKNILR 439
           GW+L PNS+     SE   G T++G I+FTDINLISGMEQTSFLFQQASKVGFSH NILR
Sbjct: 390 GWYLAPNSNLSSPVSET-LGGTKSGDIIFTDINLISGMEQTSFLFQQASKVGFSHSNILR 448

Query: 440 SVVRHACLRFPNLPSESGISAQVPTRSKSFELNKAFPFPEGARKVFVIFGGDTSERQVSL 499
           ++V  AC RFP+L   +   +Q+   S + E++      E  +KVFVIFGGDTSERQVS+
Sbjct: 449 TIVHRACSRFPHLDWYNYGYSQLLQGSTTLEVS------EDPQKVFVIFGGDTSERQVSV 502

Query: 500 MSGTNVWLNLLAFHDL 515
           MSGTNVW+NL  + D+
Sbjct: 503 MSGTNVWVNLQRYVDV 518



 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 5/103 (4%)

Query: 628 VFIAVHGGIGEDGTLQSLLDAEGVPYTGPGAMASKICMDKVATSVALKHLANFGVLTINK 687
           VF  +HG  GEDG +Q LL++  +P+ G G+       DK   S+ LK L   G +T+  
Sbjct: 167 VFPVIHGRFGEDGGIQELLESHNIPFVGTGSRECFRAFDKYEASLELKEL---GFMTVPN 223

Query: 688 DVRRKDDLFDKPITDIWHDLTQ-KLQCETLCVKPARDGCSTGV 729
            + +   + DK    +W    Q  L+   + VKPA+ G S GV
Sbjct: 224 YLVQGTGV-DKSEIALWFTDNQLDLEMGKVVVKPAKAGSSIGV 265