Miyakogusa Predicted Gene
- Lj1g3v2418700.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v2418700.1 tr|G7KW01|G7KW01_MEDTR D-alanine--D-alanine
ligase OS=Medicago truncatula GN=MTR_7g071990 PE=4
SV=1,82.79,0,SUBFAMILY NOT NAMED,NULL; D-ALANINE--D-ALANINE
LIGASE,D-alanine--D-alanine ligase; PreATP-grasp doma,CUFF.29126.1
(942 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G08840.2 | Symbols: | D-alanine--D-alanine ligase family | c... 1186 0.0
AT3G08840.3 | Symbols: | D-alanine--D-alanine ligase family | c... 1032 0.0
AT3G08840.1 | Symbols: | D-alanine--D-alanine ligase family | c... 591 e-169
>AT3G08840.2 | Symbols: | D-alanine--D-alanine ligase family |
chr3:2679648-2686157 REVERSE LENGTH=937
Length = 937
Score = 1186 bits (3069), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 580/861 (67%), Positives = 704/861 (81%), Gaps = 17/861 (1%)
Query: 81 RVLKVGSARSVLDHLQGDDIHVSCYYIDINLNAFAISSAQVYSNTPADFDFKLESLAQSF 140
R + + SARSVLDH+QGD I+VSCYYID +L AFAISSAQVYSNTP+DFDFKLESLAQ F
Sbjct: 91 RGISLNSARSVLDHIQGDGINVSCYYIDPDLKAFAISSAQVYSNTPSDFDFKLESLAQGF 150
Query: 141 STLDDMAEHLATSVDIVFPVIHGQFGEDGRIQELLEKYNVPYVGTGSKECCQAFDKYKAS 200
S+L ++AEHL ++VDIVFPVIHG+FGEDG IQELLE +N+P+VGTGS+EC +AFDKY+AS
Sbjct: 151 SSLSELAEHLVSAVDIVFPVIHGRFGEDGGIQELLESHNIPFVGTGSRECFRAFDKYEAS 210
Query: 201 LELRQHGFVTVPSFLVQGHKTDKSELSEWFRKHQLDPDLGKVVVKPTRGGSSIGVGVAYG 260
LEL++ GF+TVP++LVQG DKSE++ WF +QLD ++GKVVVKP + GSSIGV VA+G
Sbjct: 211 LELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKAGSSIGVKVAFG 270
Query: 261 VNDSLVKANEIMTEGIDNKVLIEIFLEGGSEFTAIVLDVGSGSDCCPVVLLPTEVELQFL 320
VNDS+ KA E++ EGID++V++E+F+E EFTAIVLDVGSGS C PVVL+PTEV+LQF
Sbjct: 271 VNDSIKKATELILEGIDDRVVVEVFIEDAYEFTAIVLDVGSGSVCHPVVLMPTEVQLQFH 330
Query: 321 GANDVKENDAIFNYRRKYLPTQQVAYHTPPRFPLDVIDNIRKGASLIFQRLCLQDFARID 380
G D KEN AIF+YRRKYLPTQQV YHTPPRFP+ VI +IR+ ASLIFQ+L L+DFARID
Sbjct: 331 GIGDPKEN-AIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREEASLIFQKLGLRDFARID 389
Query: 381 GWFL-PNSDSKLSCSENEFGRTEAGTILFTDINLISGMEQTSFLFQQASKVGFSHKNILR 439
GW+L PNS+ SE G T++G I+FTDINLISGMEQTSFLFQQASKVGFSH NILR
Sbjct: 390 GWYLAPNSNLSSPVSET-LGGTKSGDIIFTDINLISGMEQTSFLFQQASKVGFSHSNILR 448
Query: 440 SVVRHACLRFPNLPSESGISAQVPTRSKSFELNKAFPFPEGARKVFVIFGGDTSERQVSL 499
++V AC RFP+L + +Q+ S + E++ E +KVFVIFGGDTSERQVS+
Sbjct: 449 TIVHRACSRFPHLDWYNYGYSQLLQGSTTLEVS------EDPQKVFVIFGGDTSERQVSV 502
Query: 500 MSGTNVWLNLLAFHDLEVTPFLLASTSECESNVDMVKKADDVRDRTIWSLPYSLVLRHTT 559
MSGTNVW+NL + DL VTP LL+ + + ++ +R +W LPYS+VLRHT
Sbjct: 503 MSGTNVWVNLQRYVDLNVTPCLLSPSLSNSLGA-----SSNLDNREVWVLPYSVVLRHTA 557
Query: 560 EEVLAACKEAIEPDRAALTSNLRKKVVNELMEGLKDHNWFTGFDIADELPMKFSLRLWIK 619
EEVLAAC EA+EP RA TS L+K+V+ +LM+G K+ +WF GFDI DELP K+SL+ WIK
Sbjct: 558 EEVLAACLEAVEPVRALFTSLLQKQVMEDLMDGFKNQSWFAGFDITDELPRKYSLKEWIK 617
Query: 620 SAKEVQATVFIAVHGGIGEDGTLQSLLDAEGVPYTGPGAMASKICMDKVATSVALKHLAN 679
AKE QATVFIAVHGGIGEDGTLQ LL+ EGV YTGPG +AS+ CMDKV TS AL +L+
Sbjct: 618 HAKEAQATVFIAVHGGIGEDGTLQGLLEDEGVSYTGPGVLASRTCMDKVMTSQALSNLSE 677
Query: 680 FGVLTINKDVRRKDDLFDKPITDIWHDLTQKLQCETLCVKPARDGCSTGVARLCCSDDLA 739
FG+ TI+KDV+R +D+ + ++W +L +KLQC TLCVKPA+DGCSTGVARLC S+DLA
Sbjct: 678 FGIHTISKDVKRTEDIMHETFPNVWDELIKKLQCLTLCVKPAKDGCSTGVARLCSSEDLA 737
Query: 740 IYVKALEDCLLRIPPNSFSKAHSIIEMPNPPPELLIFEPFIETDEIVVTSKFKETGHDLM 799
+YV+AL+DC+ RIPPN+ SK H +IEMPNP PE LIFEPF+ETDEI+V+SK K+ L
Sbjct: 738 VYVQALKDCIPRIPPNTLSKTHGMIEMPNPTPEFLIFEPFVETDEIIVSSKAKQ---QLS 794
Query: 800 WKGHSRWVEITVGVIGKRGSMHSLSPSVTVKETGDILSLEEKFQGGTGINLTPPPLSIMS 859
WKG RWVE+TVGVIGKRGSMHSLSPS+TVKE+GDILSLEEKFQGGTGINLTPPP +IMS
Sbjct: 795 WKGRRRWVEMTVGVIGKRGSMHSLSPSLTVKESGDILSLEEKFQGGTGINLTPPPPTIMS 854
Query: 860 EKALQRCKKHIEQIANTLQLEGFSRIDAFVNVDNGEVLIIEINTVPGMTPSTVLIHQALA 919
++AL+RCK+ IE IA TL LEGFSRIDAFV+V+ GEVL+IE+NTVPGMTPSTVLI QALA
Sbjct: 855 KEALERCKQGIELIAETLGLEGFSRIDAFVHVETGEVLVIEVNTVPGMTPSTVLIQQALA 914
Query: 920 EQPPLYPHQFFRTLLDLGSVR 940
EQPP+YP QFFRTLL L + R
Sbjct: 915 EQPPMYPPQFFRTLLHLATQR 935
>AT3G08840.3 | Symbols: | D-alanine--D-alanine ligase family |
chr3:2680568-2686157 REVERSE LENGTH=845
Length = 845
Score = 1032 bits (2669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/764 (66%), Positives = 618/764 (80%), Gaps = 17/764 (2%)
Query: 81 RVLKVGSARSVLDHLQGDDIHVSCYYIDINLNAFAISSAQVYSNTPADFDFKLESLAQSF 140
R + + SARSVLDH+QGD I+VSCYYID +L AFAISSAQVYSNTP+DFDFKLESLAQ F
Sbjct: 91 RGISLNSARSVLDHIQGDGINVSCYYIDPDLKAFAISSAQVYSNTPSDFDFKLESLAQGF 150
Query: 141 STLDDMAEHLATSVDIVFPVIHGQFGEDGRIQELLEKYNVPYVGTGSKECCQAFDKYKAS 200
S+L ++AEHL ++VDIVFPVIHG+FGEDG IQELLE +N+P+VGTGS+EC +AFDKY+AS
Sbjct: 151 SSLSELAEHLVSAVDIVFPVIHGRFGEDGGIQELLESHNIPFVGTGSRECFRAFDKYEAS 210
Query: 201 LELRQHGFVTVPSFLVQGHKTDKSELSEWFRKHQLDPDLGKVVVKPTRGGSSIGVGVAYG 260
LEL++ GF+TVP++LVQG DKSE++ WF +QLD ++GKVVVKP + GSSIGV VA+G
Sbjct: 211 LELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKAGSSIGVKVAFG 270
Query: 261 VNDSLVKANEIMTEGIDNKVLIEIFLEGGSEFTAIVLDVGSGSDCCPVVLLPTEVELQFL 320
VNDS+ KA E++ EGID++V++E+F+E EFTAIVLDVGSGS C PVVL+PTEV+LQF
Sbjct: 271 VNDSIKKATELILEGIDDRVVVEVFIEDAYEFTAIVLDVGSGSVCHPVVLMPTEVQLQFH 330
Query: 321 GANDVKENDAIFNYRRKYLPTQQVAYHTPPRFPLDVIDNIRKGASLIFQRLCLQDFARID 380
G D KEN AIF+YRRKYLPTQQV YHTPPRFP+ VI +IR+ ASLIFQ+L L+DFARID
Sbjct: 331 GIGDPKEN-AIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREEASLIFQKLGLRDFARID 389
Query: 381 GWFL-PNSDSKLSCSENEFGRTEAGTILFTDINLISGMEQTSFLFQQASKVGFSHKNILR 439
GW+L PNS+ SE G T++G I+FTDINLISGMEQTSFLFQQASKVGFSH NILR
Sbjct: 390 GWYLAPNSNLSSPVSET-LGGTKSGDIIFTDINLISGMEQTSFLFQQASKVGFSHSNILR 448
Query: 440 SVVRHACLRFPNLPSESGISAQVPTRSKSFELNKAFPFPEGARKVFVIFGGDTSERQVSL 499
++V AC RFP+L + +Q+ S + E++ E +KVFVIFGGDTSERQVS+
Sbjct: 449 TIVHRACSRFPHLDWYNYGYSQLLQGSTTLEVS------EDPQKVFVIFGGDTSERQVSV 502
Query: 500 MSGTNVWLNLLAFHDLEVTPFLLASTSECESNVDMVKKADDVRDRTIWSLPYSLVLRHTT 559
MSGTNVW+NL + DL VTP LL+ + + ++ +R +W LPYS+VLRHT
Sbjct: 503 MSGTNVWVNLQRYVDLNVTPCLLSPSLSNSLGA-----SSNLDNREVWVLPYSVVLRHTA 557
Query: 560 EEVLAACKEAIEPDRAALTSNLRKKVVNELMEGLKDHNWFTGFDIADELPMKFSLRLWIK 619
EEVLAAC EA+EP RA TS L+K+V+ +LM+G K+ +WF GFDI DELP K+SL+ WIK
Sbjct: 558 EEVLAACLEAVEPVRALFTSLLQKQVMEDLMDGFKNQSWFAGFDITDELPRKYSLKEWIK 617
Query: 620 SAKEVQATVFIAVHGGIGEDGTLQSLLDAEGVPYTGPGAMASKICMDKVATSVALKHLAN 679
AKE QATVFIAVHGGIGEDGTLQ LL+ EGV YTGPG +AS+ CMDKV TS AL +L+
Sbjct: 618 HAKEAQATVFIAVHGGIGEDGTLQGLLEDEGVSYTGPGVLASRTCMDKVMTSQALSNLSE 677
Query: 680 FGVLTINKDVRRKDDLFDKPITDIWHDLTQKLQCETLCVKPARDGCSTGVARLCCSDDLA 739
FG+ TI+KDV+R +D+ + ++W +L +KLQC TLCVKPA+DGCSTGVARLC S+DLA
Sbjct: 678 FGIHTISKDVKRTEDIMHETFPNVWDELIKKLQCLTLCVKPAKDGCSTGVARLCSSEDLA 737
Query: 740 IYVKALEDCLLRIPPNSFSKAHSIIEMPNPPPELLIFEPFIETDEIVVTSKFKETGHDLM 799
+YV+AL+DC+ RIPPN+ SK H +IEMPNP PE LIFEPF+ETDEI+V+SK K+ L
Sbjct: 738 VYVQALKDCIPRIPPNTLSKTHGMIEMPNPTPEFLIFEPFVETDEIIVSSKAKQ---QLS 794
Query: 800 WKGHSRWVEITVGVIGKRGSMHSLSPSVTVKETGDILSLEEKFQ 843
WKG RWVE+TVGVIGKRGSMHSLSPS+TVKE+GDILSLEEKFQ
Sbjct: 795 WKGRRRWVEMTVGVIGKRGSMHSLSPSLTVKESGDILSLEEKFQ 838
>AT3G08840.1 | Symbols: | D-alanine--D-alanine ligase family |
chr3:2682611-2686157 REVERSE LENGTH=519
Length = 519
Score = 591 bits (1523), Expect = e-169, Method: Compositional matrix adjust.
Identities = 292/436 (66%), Positives = 358/436 (82%), Gaps = 9/436 (2%)
Query: 81 RVLKVGSARSVLDHLQGDDIHVSCYYIDINLNAFAISSAQVYSNTPADFDFKLESLAQSF 140
R + + SARSVLDH+QGD I+VSCYYID +L AFAISSAQVYSNTP+DFDFKLESLAQ F
Sbjct: 91 RGISLNSARSVLDHIQGDGINVSCYYIDPDLKAFAISSAQVYSNTPSDFDFKLESLAQGF 150
Query: 141 STLDDMAEHLATSVDIVFPVIHGQFGEDGRIQELLEKYNVPYVGTGSKECCQAFDKYKAS 200
S+L ++AEHL ++VDIVFPVIHG+FGEDG IQELLE +N+P+VGTGS+EC +AFDKY+AS
Sbjct: 151 SSLSELAEHLVSAVDIVFPVIHGRFGEDGGIQELLESHNIPFVGTGSRECFRAFDKYEAS 210
Query: 201 LELRQHGFVTVPSFLVQGHKTDKSELSEWFRKHQLDPDLGKVVVKPTRGGSSIGVGVAYG 260
LEL++ GF+TVP++LVQG DKSE++ WF +QLD ++GKVVVKP + GSSIGV VA+G
Sbjct: 211 LELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKAGSSIGVKVAFG 270
Query: 261 VNDSLVKANEIMTEGIDNKVLIEIFLEGGSEFTAIVLDVGSGSDCCPVVLLPTEVELQFL 320
VNDS+ KA E++ EGID++V++E+F+E EFTAIVLDVGSGS C PVVL+PTEV+LQF
Sbjct: 271 VNDSIKKATELILEGIDDRVVVEVFIEDAYEFTAIVLDVGSGSVCHPVVLMPTEVQLQFH 330
Query: 321 GANDVKENDAIFNYRRKYLPTQQVAYHTPPRFPLDVIDNIRKGASLIFQRLCLQDFARID 380
G D KEN AIF+YRRKYLPTQQV YHTPPRFP+ VI +IR+ ASLIFQ+L L+DFARID
Sbjct: 331 GIGDPKEN-AIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREEASLIFQKLGLRDFARID 389
Query: 381 GWFL-PNSDSKLSCSENEFGRTEAGTILFTDINLISGMEQTSFLFQQASKVGFSHKNILR 439
GW+L PNS+ SE G T++G I+FTDINLISGMEQTSFLFQQASKVGFSH NILR
Sbjct: 390 GWYLAPNSNLSSPVSET-LGGTKSGDIIFTDINLISGMEQTSFLFQQASKVGFSHSNILR 448
Query: 440 SVVRHACLRFPNLPSESGISAQVPTRSKSFELNKAFPFPEGARKVFVIFGGDTSERQVSL 499
++V AC RFP+L + +Q+ S + E++ E +KVFVIFGGDTSERQVS+
Sbjct: 449 TIVHRACSRFPHLDWYNYGYSQLLQGSTTLEVS------EDPQKVFVIFGGDTSERQVSV 502
Query: 500 MSGTNVWLNLLAFHDL 515
MSGTNVW+NL + D+
Sbjct: 503 MSGTNVWVNLQRYVDV 518
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 628 VFIAVHGGIGEDGTLQSLLDAEGVPYTGPGAMASKICMDKVATSVALKHLANFGVLTINK 687
VF +HG GEDG +Q LL++ +P+ G G+ DK S+ LK L G +T+
Sbjct: 167 VFPVIHGRFGEDGGIQELLESHNIPFVGTGSRECFRAFDKYEASLELKEL---GFMTVPN 223
Query: 688 DVRRKDDLFDKPITDIWHDLTQ-KLQCETLCVKPARDGCSTGV 729
+ + + DK +W Q L+ + VKPA+ G S GV
Sbjct: 224 YLVQGTGV-DKSEIALWFTDNQLDLEMGKVVVKPAKAGSSIGV 265