Miyakogusa Predicted Gene

Lj1g3v2416610.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2416610.1 Non Chatacterized Hit- tr|C5X6F1|C5X6F1_SORBI
Putative uncharacterized protein Sb02g043850
OS=Sorghu,44.62,8e-19,DUF588,Uncharacterised protein family UPF0497,
trans-membrane plant; seg,NULL,CUFF.29002.1
         (199 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G38480.1 | Symbols:  | Uncharacterised protein family (UPF049...   153   8e-38
AT2G36330.1 | Symbols:  | Uncharacterised protein family (UPF049...    86   1e-17
AT5G40300.1 | Symbols:  | Uncharacterised protein family (UPF049...    50   1e-06

>AT2G38480.1 | Symbols:  | Uncharacterised protein family (UPF0497)
           | chr2:16110960-16111694 REVERSE LENGTH=188
          Length = 188

 Score =  153 bits (386), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 77/183 (42%), Positives = 103/183 (56%), Gaps = 4/183 (2%)

Query: 17  VQTPPMAPAGDRQAPAASTGGVGGILRRWRREDLLKRGSLGLRGIALLFSLISFIAMASN 76
           V+   +  A ++ +      G   I +RW+REDL+K+ S   RGI LLFSLI+F+ M SN
Sbjct: 10  VEATDVESAAEKTSEPTPASGTSTITQRWKREDLIKKASPITRGICLLFSLIAFLIMVSN 69

Query: 77  QHGDWREFDKYEEYRYLLAIAILSCLYTGAQVFRQVHELSTGKQLIQPRMAAMIDFIGDQ 136
           +HG  R F+ YEEYRY+LAI+I+S LYT  Q F    +    +++   R + ++DF GDQ
Sbjct: 70  KHGYGRNFNDYEEYRYVLAISIISTLYTAWQTFAHFSK----REIFDRRTSILVDFSGDQ 125

Query: 137 XXXXXXXXXXXXXXPITNRMREGADNIFTDXXXXXXXXXXXXXLCLALSALISGYKLSTQ 196
                         P+TN  REG DNIFTD             + LALSAL SGYKLST 
Sbjct: 126 IVAYLLISAASSAIPLTNIFREGQDNIFTDSAASAISMAIFAFIALALSALFSGYKLSTH 185

Query: 197 PYI 199
            +I
Sbjct: 186 SFI 188


>AT2G36330.1 | Symbols:  | Uncharacterised protein family (UPF0497)
           | chr2:15233620-15235298 FORWARD LENGTH=283
          Length = 283

 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 89/190 (46%), Gaps = 3/190 (1%)

Query: 10  NSTPKIHVQTPPMAPAGDRQAPAASTGGVGGILRRWRREDLLKRGSLGLRGIALLFSLIS 69
           N + K  V T   A  G  ++    +G V  ILRR RRE+++K  +LG R   ++ +LIS
Sbjct: 91  NRSVKEVVPTRKSARVGSGRSSGQRSGAVSAILRRSRREEVVKFSALGFRLSEVVLALIS 150

Query: 70  FIAMASNQHGDWR--EFDKYEEYRYLLAIAILSCLYTGAQVFRQVHELSTGKQLIQPRMA 127
           F  MA+++   W    FD+Y+EYR+ L++ +++ +Y+  Q     + L   K LI   + 
Sbjct: 151 FSIMAADKTKGWSGDSFDRYKEYRFCLSVNVVAFVYSSFQACDLAYHLVKEKHLISHHLR 210

Query: 128 AMIDFIGDQXXXXXXXXXXXXXXP-ITNRMREGADNIFTDXXXXXXXXXXXXXLCLALSA 186
            + +FI DQ                + + +     + FT+             L  A S+
Sbjct: 211 PLFEFIIDQVLAYLLMSASTAAVTRVDDWVSNWGKDEFTEMASASIAMSFLAFLAFAFSS 270

Query: 187 LISGYKLSTQ 196
           LISGY L  Q
Sbjct: 271 LISGYNLFNQ 280


>AT5G40300.1 | Symbols:  | Uncharacterised protein family (UPF0497)
           | chr5:16110778-16112701 FORWARD LENGTH=270
          Length = 270

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 65/155 (41%), Gaps = 5/155 (3%)

Query: 43  RRWRREDLLKRGSLGLRGIALLFSLISFIAMASNQHGDWRE--FDKYEEYRYLLAIAILS 100
           R  +   L+++  LG R IA +  L+SF  M S++   W    F  Y+E+R+ LA  ++ 
Sbjct: 111 RESKWASLIRKALLGFRVIAFVSCLVSFSVMVSDRDKGWAHDSFYNYKEFRFCLAANVIG 170

Query: 101 CLYTGAQVFRQVHELSTGKQLIQPRMAAMIDFIGDQXXXXXXXXXXXXXXPITNRMRE-- 158
            +Y+G  +   V+ LST  +  +  +   ++F  DQ                 +  +   
Sbjct: 171 FVYSGFMICDLVYLLSTSIRRSRHNLRHFLEFGLDQMLAYLLASASTSASIRVDDWQSNW 230

Query: 159 GADNIFTDXXXXXXXXXXXXXLCLALSALISGYKL 193
           GAD  F D             +  A  +L SGY L
Sbjct: 231 GADK-FPDLARASVALSYVSFVAFAFCSLASGYAL 264