Miyakogusa Predicted Gene

Lj1g3v2373680.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2373680.1 Non Chatacterized Hit- tr|I1L362|I1L362_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,32.56,8.3, ,62314_g.1
         (216 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G09510.1 | Symbols:  | Ribonuclease H-like superfamily protei...    58   4e-09
AT4G29090.1 | Symbols:  | Ribonuclease H-like superfamily protei...    51   7e-07
AT3G25270.1 | Symbols:  | Ribonuclease H-like superfamily protei...    50   9e-07

>AT3G09510.1 | Symbols:  | Ribonuclease H-like superfamily protein |
           chr3:2921804-2923258 FORWARD LENGTH=484
          Length = 484

 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 13/125 (10%)

Query: 65  GVLSSIQLIENKT-DEWIWKLEGEGAFSVNSAYLFLQEQ---FLEAIDP------VFEML 114
           G +  I L ++K  D+ IW     G ++V S Y  L       + AI+P      +   +
Sbjct: 103 GFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRI 162

Query: 115 WRVPAPSNVRAFAWRALQDRIQTRDNLRRRNMIPAAESTACPLCLQAEESSSHLLFVCPV 174
           W +P    ++ F WRAL   + T + L  R M       +CP C +  ES +H LF CP 
Sbjct: 163 WNLPIMPKLKHFLWRALSQALATTERLTTRGM---RIDPSCPRCHRENESINHALFTCPF 219

Query: 175 SAQIW 179
           +   W
Sbjct: 220 ATMAW 224


>AT4G29090.1 | Symbols:  | Ribonuclease H-like superfamily protein |
           chr4:14333528-14335255 FORWARD LENGTH=575
          Length = 575

 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 14/117 (11%)

Query: 78  DEWIWKLEGEGAFSVNSAYLFL----------QEQFLEAIDPVFEMLWRVPAPSNVRAFA 127
           D + W     G ++V S Y  L          QE    +++P+++ +W+      ++ F 
Sbjct: 211 DSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSEPSLNPIYQKIWKSQTSPKIQHFL 270

Query: 128 WRALQDRIQTRDNLRRRNMIPAAESTACPLCLQAEESSSHLLFVCPVSAQIWYAISA 184
           W+ L + +     L  R++   ++ +AC  C   +E+ +HLLF C  +   W AIS+
Sbjct: 271 WKCLSNSLPVAGALAYRHL---SKESACIRCPSCKETVNHLLFKCTFARLTW-AISS 323


>AT3G25270.1 | Symbols:  | Ribonuclease H-like superfamily protein |
           chr3:9203934-9204965 REVERSE LENGTH=343
          Length = 343

 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 3/68 (4%)

Query: 114 LWRVPAPSNVRAFAWRALQDRIQTRDNLRRRNMIPAAESTACPLCLQAEESSSHLLFVCP 173
           +W++     ++ F W+ L   + T DNL+RR++        C  C Q +E+S HL F C 
Sbjct: 18  IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHI---RNHPQCHRCCQEDETSQHLFFDCF 74

Query: 174 VSAQIWYA 181
            + Q+W A
Sbjct: 75  YAQQVWRA 82