Miyakogusa Predicted Gene

Lj1g3v2372130.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2372130.1 Non Chatacterized Hit- tr|B9T1I6|B9T1I6_RICCO
Protein sco1, putative OS=Ricinus communis
GN=RCOM_018,80,0,SCO1/SENC,Copper chaperone SCO1/SenC;
SCO1-SenC,Copper chaperone SCO1/SenC;
Thioredoxin-like,Thiored,CUFF.28928.1
         (195 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G08950.1 | Symbols: HCC1 | electron transport SCO1/SenC famil...   310   4e-85
AT4G39740.1 | Symbols:  | Thioredoxin superfamily protein | chr4...   156   9e-39

>AT3G08950.1 | Symbols: HCC1 | electron transport SCO1/SenC family
           protein | chr3:2727285-2729289 FORWARD LENGTH=334
          Length = 334

 Score =  310 bits (794), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 143/180 (79%), Positives = 161/180 (89%)

Query: 15  DINNASEAVKHGPSAGKAAIGGPFHLTNHHGKRVTEKDFLGKWTVMYFGFTHCPDICPDE 74
           DIN  S AVK GPSAGKAAIGGPF L    GKRVTEK+ +GKWT++YFGFTHCPDICPDE
Sbjct: 154 DINKNSIAVKEGPSAGKAAIGGPFSLIRDDGKRVTEKNLMGKWTILYFGFTHCPDICPDE 213

Query: 75  LQKLAVAVDKIKEKSGIEIVPVFISVDPERDTVEQVSEYVKEFHPKLIGLTGSSDEIKSV 134
           L KLA A+DKIKE SG+++VPVFISVDPERDTV+QV EYVKEFHPKLIGLTGS +EIKSV
Sbjct: 214 LIKLAAAIDKIKENSGVDVVPVFISVDPERDTVQQVHEYVKEFHPKLIGLTGSPEEIKSV 273

Query: 135 ARAYRVYYMKTAEEDSDYLVDHSIVMYLMGPDMNYVKFFGKNNDADSLADGIVKEIKQYK 194
           AR+YRVYYMKT EEDSDYLVDHSIVMYLM P+MN+VKF+GKN+D DSL DG+VKEI+QY+
Sbjct: 274 ARSYRVYYMKTEEEDSDYLVDHSIVMYLMSPEMNFVKFYGKNHDVDSLTDGVVKEIRQYR 333


>AT4G39740.1 | Symbols:  | Thioredoxin superfamily protein |
           chr4:18435586-18437095 REVERSE LENGTH=276
          Length = 276

 Score =  156 bits (394), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 69/157 (43%), Positives = 108/157 (68%)

Query: 34  IGGPFHLTNHHGKRVTEKDFLGKWTVMYFGFTHCPDICPDELQKLAVAVDKIKEKSGIEI 93
           IGGPF L +   K VTE DF GKW ++YFG++  PD+ P++L+ ++ AVDK++ K   +I
Sbjct: 115 IGGPFTLVSTENKIVTENDFCGKWVLLYFGYSFSPDVGPEQLKMMSKAVDKLESKHNEKI 174

Query: 94  VPVFISVDPERDTVEQVSEYVKEFHPKLIGLTGSSDEIKSVARAYRVYYMKTAEEDSDYL 153
           +PVF+++DP+RDT   +  Y+KEF  +++GLTG++  ++ +A+ YRVY+ K  E+  DYL
Sbjct: 175 LPVFVTLDPQRDTPSHLHAYLKEFDSRILGLTGTASAMRQMAQEYRVYFKKVQEDGEDYL 234

Query: 154 VDHSIVMYLMGPDMNYVKFFGKNNDADSLADGIVKEI 190
           VD S  MYL+ P M  V+ FG   + D L+  ++KE+
Sbjct: 235 VDTSHNMYLINPKMEIVRCFGVEYNPDELSQELLKEV 271