Miyakogusa Predicted Gene

Lj1g3v2327880.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2327880.1 tr|Q0JAF2|Q0JAF2_ORYSJ Os04g0602300 protein
(Fragment) OS=Oryza sativa subsp. japonica
GN=Os04g06023,42.27,8e-18,seg,NULL; coiled-coil,NULL; TRANSCRIPTION
FACTOR,NULL; ZINC FINGER PROTEIN WITH KRAB AND SCAN
DOMAIN,CUFF.28907.1
         (292 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G38250.1 | Symbols:  | Homeodomain-like superfamily protein |...   177   8e-45
AT5G01380.1 | Symbols:  | Homeodomain-like superfamily protein |...   171   5e-43
AT3G25990.1 | Symbols:  | Homeodomain-like superfamily protein |...    71   8e-13
AT1G13450.1 | Symbols: GT-1 | Homeodomain-like superfamily prote...    64   1e-10
AT1G13450.2 | Symbols: GT-1 | Homeodomain-like superfamily prote...    64   1e-10
AT1G13450.3 | Symbols: GT-1 | Homeodomain-like superfamily prote...    64   1e-10
AT5G63420.1 | Symbols: emb2746 | RNA-metabolising metallo-beta-l...    58   7e-09
AT5G03680.1 | Symbols: PTL | Duplicated homeodomain-like superfa...    55   5e-08
AT1G33240.1 | Symbols: AT-GTL1, AT-GTL2, GTL1 | GT-2-like 1 | ch...    55   7e-08
AT3G10000.1 | Symbols: EDA31 | Homeodomain-like superfamily prot...    55   8e-08
AT1G76890.2 | Symbols: GT2, AT-GT2 | Duplicated homeodomain-like...    52   5e-07
AT1G76880.1 | Symbols:  | Duplicated homeodomain-like superfamil...    52   5e-07

>AT2G38250.1 | Symbols:  | Homeodomain-like superfamily protein |
           chr2:16018384-16019500 FORWARD LENGTH=289
          Length = 289

 Score =  177 bits (449), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 78/101 (77%), Positives = 89/101 (88%)

Query: 48  VTDRFPQWSIQETKEFLVIRAELDQTFMETKRNKQLWEVISNQMKEKGYHRSAEQCKCKW 107
           V DRFPQWS++ETKE + IR ELDQTFMETKRNK LWEVISN+M++K + RS EQCKCKW
Sbjct: 35  VGDRFPQWSVEETKELIGIRGELDQTFMETKRNKLLWEVISNKMRDKSFPRSPEQCKCKW 94

Query: 108 KNLVTRYKGCETMEPEASRQQFPFYNDLQAIFTVRMQRMLW 148
           KNLVTR+KGCETME E +RQQFPFY+D+Q IFT RMQRMLW
Sbjct: 95  KNLVTRFKGCETMEAETARQQFPFYDDMQNIFTTRMQRMLW 135


>AT5G01380.1 | Symbols:  | Homeodomain-like superfamily protein |
           chr5:155784-157451 REVERSE LENGTH=323
          Length = 323

 Score =  171 bits (433), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 79/113 (69%), Positives = 92/113 (81%), Gaps = 1/113 (0%)

Query: 50  DRFPQWSIQETKEFLVIRAELDQTFMETKRNKQLWEVISNQMKEKGYHRSAEQCKCKWKN 109
           +R PQWSI+ETKE L IR ELDQTFMETKRNK LWEV++ +M +KG+ RSAEQCK KWKN
Sbjct: 47  ERIPQWSIEETKELLAIREELDQTFMETKRNKLLWEVVAAKMADKGFVRSAEQCKSKWKN 106

Query: 110 LVTRYKGCETMEPEASRQQFPFYNDLQAIFTVRMQRMLWAEA-EGGSKKKGVH 161
           LVTRYK CET EP+A RQQFPFYN++Q+IF  RMQRMLW+EA E  +  K  H
Sbjct: 107 LVTRYKACETTEPDAIRQQFPFYNEIQSIFEARMQRMLWSEATEPSTSSKRKH 159


>AT3G25990.1 | Symbols:  | Homeodomain-like superfamily protein |
           chr3:9504846-9506703 REVERSE LENGTH=372
          Length = 372

 Score = 71.2 bits (173), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 60/100 (60%), Gaps = 3/100 (3%)

Query: 55  WSIQETKEFLVIRAELDQTFMETKRNKQLWEVISNQMKEKGYHRSAEQCKCKWKNLVTRY 114
           W+  ET+  + +R E+D  F  +K NK LWE IS +M+EKG+ RS   C  KW+N++  +
Sbjct: 55  WAQDETRTLISLRREMDNLFNTSKSNKHLWEQISKKMREKGFDRSPSMCTDKWRNILKEF 114

Query: 115 KGCETMEPEAS---RQQFPFYNDLQAIFTVRMQRMLWAEA 151
           K  +  E +A+     +  +YN+++ IF  R +++ + ++
Sbjct: 115 KKAKQHEDKATSGGSTKMSYYNEIEDIFRERKKKVAFYKS 154


>AT1G13450.1 | Symbols: GT-1 | Homeodomain-like superfamily protein
           | chr1:4612999-4615115 REVERSE LENGTH=406
          Length = 406

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 51/92 (55%)

Query: 55  WSIQETKEFLVIRAELDQTFMETKRNKQLWEVISNQMKEKGYHRSAEQCKCKWKNLVTRY 114
           W   ET+  ++ R  +D  F  +K NK LWE IS++M+EKG+ RS   C  KW+NL+  +
Sbjct: 87  WVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPTMCTDKWRNLLKEF 146

Query: 115 KGCETMEPEASRQQFPFYNDLQAIFTVRMQRM 146
           K  +  +      +  +Y +++ I   R +++
Sbjct: 147 KKAKHHDRGNGSAKMSYYKEIEDILRERSKKV 178


>AT1G13450.2 | Symbols: GT-1 | Homeodomain-like superfamily protein
           | chr1:4612999-4615115 REVERSE LENGTH=361
          Length = 361

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 51/92 (55%)

Query: 55  WSIQETKEFLVIRAELDQTFMETKRNKQLWEVISNQMKEKGYHRSAEQCKCKWKNLVTRY 114
           W   ET+  ++ R  +D  F  +K NK LWE IS++M+EKG+ RS   C  KW+NL+  +
Sbjct: 87  WVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPTMCTDKWRNLLKEF 146

Query: 115 KGCETMEPEASRQQFPFYNDLQAIFTVRMQRM 146
           K  +  +      +  +Y +++ I   R +++
Sbjct: 147 KKAKHHDRGNGSAKMSYYKEIEDILRERSKKV 178


>AT1G13450.3 | Symbols: GT-1 | Homeodomain-like superfamily protein
           | chr1:4613708-4615115 REVERSE LENGTH=278
          Length = 278

 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 51/92 (55%)

Query: 55  WSIQETKEFLVIRAELDQTFMETKRNKQLWEVISNQMKEKGYHRSAEQCKCKWKNLVTRY 114
           W   ET+  ++ R  +D  F  +K NK LWE IS++M+EKG+ RS   C  KW+NL+  +
Sbjct: 87  WVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPTMCTDKWRNLLKEF 146

Query: 115 KGCETMEPEASRQQFPFYNDLQAIFTVRMQRM 146
           K  +  +      +  +Y +++ I   R +++
Sbjct: 147 KKAKHHDRGNGSAKMSYYKEIEDILRERSKKV 178


>AT5G63420.1 | Symbols: emb2746 | RNA-metabolising
           metallo-beta-lactamase family protein |
           chr5:25400515-25405807 FORWARD LENGTH=911
          Length = 911

 Score = 58.2 bits (139), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 51  RFPQWSIQETKEFLVIRAELDQTFMETKRNKQLWEVISNQMKEKGYHRSAEQCKCKWKNL 110
           R  +W  +E K+ + +R EL   F   K    LWE IS+ +  +G +RS  QCK  W +L
Sbjct: 817 RKNKWKPEEIKKVIRMRGELHSRFQVVKGRMALWEEISSNLSAEGINRSPGQCKSLWASL 876

Query: 111 VTRYKGCETMEPEASRQQFPFYNDLQAIFT 140
           + +Y+  E+   E S+  +P + D+  I +
Sbjct: 877 IQKYE--ESKADERSKTSWPHFEDMNNILS 904


>AT5G03680.1 | Symbols: PTL | Duplicated homeodomain-like
           superfamily protein | chr5:957858-960760 FORWARD
           LENGTH=591
          Length = 591

 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 6/89 (6%)

Query: 55  WSIQETKEFLVIRAELDQTFMETKRNKQLWEVISNQMKEK-GYHRSAEQCKCKWKNLVTR 113
           W  QET   L IR+ LD  F E  +   LW+ +S  M E+ GY RS ++C+ K++NL   
Sbjct: 120 WPRQETLTLLEIRSRLDHKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKY 179

Query: 114 YKGCETMEPEASRQ---QFPFYNDLQAIF 139
           Y+  +T E +A RQ    + F+  L+A++
Sbjct: 180 YR--KTKEGKAGRQDGKHYRFFRQLEALY 206


>AT1G33240.1 | Symbols: AT-GTL1, AT-GTL2, GTL1 | GT-2-like 1 |
           chr1:12051859-12054320 REVERSE LENGTH=669
          Length = 669

 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 1/88 (1%)

Query: 55  WSIQETKEFLVIRAELDQTFMETKRNKQLWEVISNQMKEKGYHRSAEQCKCKWKNLVTRY 114
           W  +ET   L IR+++D TF +      LWE +S ++ E GY RS+++CK K++N+   Y
Sbjct: 63  WPREETLALLRIRSDMDSTFRDATLKAPLWEHVSRKLLELGYKRSSKKCKEKFENVQKYY 122

Query: 115 KGC-ETMEPEASRQQFPFYNDLQAIFTV 141
           K   ET       + + F++ L+A+ T 
Sbjct: 123 KRTKETRGGRHDGKAYKFFSQLEALNTT 150


>AT3G10000.1 | Symbols: EDA31 | Homeodomain-like superfamily protein
           | chr3:3076874-3078907 FORWARD LENGTH=481
          Length = 481

 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 57/104 (54%), Gaps = 10/104 (9%)

Query: 41  SASVSADVTDRFPQWSIQETKEFLVIRAELDQTFMETKRNKQLWEVISNQMKEK-GYHRS 99
           S       T R+P+   QET   L +R+ LD  F E  +   LW+ +S  M E+ GY RS
Sbjct: 78  SGFTDGGGTGRWPR---QETLMLLEVRSRLDHKFKEANQKGPLWDEVSRIMSEEHGYTRS 134

Query: 100 AEQCKCKWKNLVTRYKGCETMEPEASRQQ----FPFYNDLQAIF 139
            ++C+ K++NL   YK  +T E ++ R+Q    + F+  L+AI+
Sbjct: 135 GKKCREKFENLYKYYK--KTKEGKSGRRQDGKNYRFFRQLEAIY 176


>AT1G76890.2 | Symbols: GT2, AT-GT2 | Duplicated homeodomain-like
           superfamily protein | chr1:28873211-28875203 REVERSE
           LENGTH=575
          Length = 575

 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 52/89 (58%), Gaps = 1/89 (1%)

Query: 54  QWSIQETKEFLVIRAELDQTFMETKRNKQLWEVISNQMKEKGYHRSAEQCKCKWKNLVTR 113
           +W   ET   L IR+E+D+ F ++     LWE IS +M E GY RS+++CK K++N+   
Sbjct: 41  RWPRPETLALLRIRSEMDKAFRDSTLKAPLWEEISRKMMELGYKRSSKKCKEKFENVYKY 100

Query: 114 YKGC-ETMEPEASRQQFPFYNDLQAIFTV 141
           +K   E    ++  + + F+ +L+A  T+
Sbjct: 101 HKRTKEGRTGKSEGKTYRFFEELEAFETL 129



 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 4/99 (4%)

Query: 47  DVTDRFPQWSIQETKEFLVIRAELDQTFMETKRNKQLWEVISNQMKEKGYHRSAEQCKCK 106
            V+    +W   E +  + IR  L+  + E      LWE IS  M+  GY+RSA++CK K
Sbjct: 390 SVSPSSSRWPKTEVEALIRIRKNLEANYQENGTKGPLWEEISAGMRRLGYNRSAKRCKEK 449

Query: 107 WKNLVTRYKGCETME---PEASRQQFPFYNDLQAIFTVR 142
           W+N+   +K  +      P  S+   P+++ L+A++  R
Sbjct: 450 WENINKYFKKVKESNKKRPLDSK-TCPYFHQLEALYNER 487


>AT1G76880.1 | Symbols:  | Duplicated homeodomain-like superfamily
           protein | chr1:28865594-28867931 FORWARD LENGTH=603
          Length = 603

 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 10/109 (9%)

Query: 37  NIIASASVSADVTDRFPQWSIQETKEFLVIRAELDQTFMETKRNKQLWEVISNQMKEKGY 96
           N+  +AS S+       +W   E +  + +R  LD  + E      LWE IS  M+  G+
Sbjct: 397 NMTPAASASSS------RWPKVEIEALIKLRTNLDSKYQENGPKGPLWEEISAGMRRLGF 450

Query: 97  HRSAEQCKCKWKNLVTRYKGCETME---PEASRQQFPFYNDLQAIFTVR 142
           +R++++CK KW+N+   +K  +      PE S+   P+++ L A++  R
Sbjct: 451 NRNSKRCKEKWENINKYFKKVKESNKKRPEDSK-TCPYFHQLDALYRER 498



 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 55  WSIQETKEFLVIRAELDQTFMETKRNKQLWEVISNQMKEKGYHRSAEQCKCKWKNLVTRY 114
           W  QET   L IR+++   F +      LWE +S +M E GY R+A++CK K++N+   +
Sbjct: 62  WPRQETLALLKIRSDMGIAFRDASVKGPLWEEVSRKMAEHGYIRNAKKCKEKFENVYKYH 121

Query: 115 KGC-ETMEPEASRQQFPFYNDLQAI 138
           K   E    ++  + + F++ L+A+
Sbjct: 122 KRTKEGRTGKSEGKTYRFFDQLEAL 146