Miyakogusa Predicted Gene

Lj1g3v2325590.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2325590.1 Non Chatacterized Hit- tr|A8B830|A8B830_GIAIC
Putative uncharacterized protein OS=Giardia
intestinal,23.78,7e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; LMBR1,LMBR1-like membrane protein; coiled,CUFF.28891.1
         (509 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G01460.1 | Symbols:  | LMBR1-like membrane protein | chr5:186...   834   0.0  
AT3G08930.1 | Symbols:  | LMBR1-like membrane protein | chr3:271...   832   0.0  

>AT5G01460.1 | Symbols:  | LMBR1-like membrane protein |
           chr5:186823-190008 FORWARD LENGTH=509
          Length = 509

 Score =  834 bits (2155), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/509 (78%), Positives = 435/509 (85%)

Query: 1   MGDFNXXXXXXXXXXXXXXXXXNVYLLVNYQHPDDVNQAYFPKFVVVLGLSVAAISILML 60
           MGDFN                 ++YLLVNYQHPDD NQAYFPKFVVV GLS+A ISILML
Sbjct: 1   MGDFNLALVIVAIVVCVIVFISSIYLLVNYQHPDDANQAYFPKFVVVFGLSIAMISILML 60

Query: 61  PADVANRQACRHAIYNGACNLTLPMKDLWLAIYILDAVLVFFVIPFAMFFYEGDQDKSVG 120
           PADVANR ACRH+IYNGACNLTLPMKDLWLA+YI+DAVLVFF+IPFAMFFYEGDQDK++G
Sbjct: 61  PADVANRHACRHSIYNGACNLTLPMKDLWLAVYIVDAVLVFFIIPFAMFFYEGDQDKALG 120

Query: 121 KRIKSALLWVVTTAIVCALVLGILYGLVGKVDFTVRHLXXXXXXXXXXWNFNNGQPCIGS 180
           KRIKSAL+WVVTTA+VCALVLGILYG++GKVDF+VRHL          W F+N QPCIG+
Sbjct: 121 KRIKSALIWVVTTAVVCALVLGILYGVIGKVDFSVRHLSSATTTFPTSWQFSNNQPCIGN 180

Query: 181 GTKQCSAYSASPSSEKTWTMRATFPEYVVALATIVGSVLFAIFGGVGIACLPLGLIFSFI 240
             +QCSAY+A+ +SEKTW+MR TFPEYVVALATIVGSVLF IFGGVGIACLPLGLI +FI
Sbjct: 181 TARQCSAYTANAASEKTWSMRTTFPEYVVALATIVGSVLFTIFGGVGIACLPLGLITAFI 240

Query: 241 RRPKAVITRSQYIKEATELGKKARELKKAAESLHQEERGGAKGRKFRKNVKSVEKELFQL 300
           RRPKAVITRSQYIKEATELGKKAR+LKKAA++LHQEER GAKGRK+RKNVK+VEKEL QL
Sbjct: 241 RRPKAVITRSQYIKEATELGKKARDLKKAADALHQEERSGAKGRKWRKNVKAVEKELLQL 300

Query: 301 EEDVKLLEEMYPQGEKAETTWALTVLGYLAKFVLGILGFIVSVAWVAHIIIYLLIDPPLS 360
           EEDV LLEEMYPQGE+AET WA TVLGYLAKFVLGILG IVSVAW+AHIIIYLL+DPPLS
Sbjct: 301 EEDVNLLEEMYPQGEQAETAWAFTVLGYLAKFVLGILGLIVSVAWIAHIIIYLLVDPPLS 360

Query: 361 PFLNEVFIKLDDIWGLLGTXXXXXXXXXXXXXVIAGAMMLGLRLVFITIHPMKWGGTLMN 420
           PFLNEVFIKLDD+WGLLGT             VIAGAMMLGL+LVFITIHPMKWG TLMN
Sbjct: 361 PFLNEVFIKLDDVWGLLGTAAFAFFCFYLLLAVIAGAMMLGLKLVFITIHPMKWGATLMN 420

Query: 421 SFLFNVGLILLCSISVIQFCSXXXXXXXXXXXXXEIFGHTLESLRGIKYLYKYNVFQIAF 480
           SFLFNVGLILLCSISVIQFC+             EIFGHTL+SLRGIKYLYKYNVFQI F
Sbjct: 421 SFLFNVGLILLCSISVIQFCATAFGYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQIGF 480

Query: 481 VVLAGLTFVYYAAFGWRRKKPSGRFQLST 509
           VVLAGLTF+YY AFGWRRKKPSGRFQLST
Sbjct: 481 VVLAGLTFLYYIAFGWRRKKPSGRFQLST 509


>AT3G08930.1 | Symbols:  | LMBR1-like membrane protein |
           chr3:2713562-2717058 FORWARD LENGTH=509
          Length = 509

 Score =  832 bits (2150), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/509 (78%), Positives = 434/509 (85%)

Query: 1   MGDFNXXXXXXXXXXXXXXXXXNVYLLVNYQHPDDVNQAYFPKFVVVLGLSVAAISILML 60
           MGDFN                 ++YLLVNYQHPDD NQAYFPKFVVV GLS+A ISILML
Sbjct: 1   MGDFNLALVIVAIVVCVIVFISSIYLLVNYQHPDDANQAYFPKFVVVFGLSIAMISILML 60

Query: 61  PADVANRQACRHAIYNGACNLTLPMKDLWLAIYILDAVLVFFVIPFAMFFYEGDQDKSVG 120
           PADVANR ACRHAIYNGACNLTLPMKDLWLAIYI+DA+LVFFVIPFAMFFYEGDQDK++G
Sbjct: 61  PADVANRHACRHAIYNGACNLTLPMKDLWLAIYIVDAILVFFVIPFAMFFYEGDQDKTLG 120

Query: 121 KRIKSALLWVVTTAIVCALVLGILYGLVGKVDFTVRHLXXXXXXXXXXWNFNNGQPCIGS 180
           KRIKSAL+WVVTTA+VCALVLGILYG++GKVDF+VRHL          W F+N QPCIG+
Sbjct: 121 KRIKSALIWVVTTAVVCALVLGILYGVIGKVDFSVRHLASATSTFPTSWQFSNTQPCIGN 180

Query: 181 GTKQCSAYSASPSSEKTWTMRATFPEYVVALATIVGSVLFAIFGGVGIACLPLGLIFSFI 240
             +QCSA++A+P+SEKTWTMR TFPEYVVALATIVGSVLF IFGGVGIACLPLGLI +FI
Sbjct: 181 TARQCSAFTANPTSEKTWTMRTTFPEYVVALATIVGSVLFTIFGGVGIACLPLGLITAFI 240

Query: 241 RRPKAVITRSQYIKEATELGKKARELKKAAESLHQEERGGAKGRKFRKNVKSVEKELFQL 300
           RRPKAVITRSQYIKEATELGKKARELKKAA+ LHQEER GAKGRK+RKNVK+VEKEL QL
Sbjct: 241 RRPKAVITRSQYIKEATELGKKARELKKAADGLHQEERSGAKGRKWRKNVKAVEKELLQL 300

Query: 301 EEDVKLLEEMYPQGEKAETTWALTVLGYLAKFVLGILGFIVSVAWVAHIIIYLLIDPPLS 360
           EEDV LLEEMYPQGE+AET WA TVLGYLAKF+LGI+G IVS+AWVAHIIIYLL+DPPLS
Sbjct: 301 EEDVNLLEEMYPQGEQAETAWAFTVLGYLAKFILGIVGLIVSIAWVAHIIIYLLVDPPLS 360

Query: 361 PFLNEVFIKLDDIWGLLGTXXXXXXXXXXXXXVIAGAMMLGLRLVFITIHPMKWGGTLMN 420
           PFLNEVFIKLDD+WGLLGT             VIAGAMMLGL+LVFITIHPMKWG TLMN
Sbjct: 361 PFLNEVFIKLDDVWGLLGTAAFAFFCFYLLLAVIAGAMMLGLKLVFITIHPMKWGATLMN 420

Query: 421 SFLFNVGLILLCSISVIQFCSXXXXXXXXXXXXXEIFGHTLESLRGIKYLYKYNVFQIAF 480
           SFLFNVGLILLCSISVIQFC+             EIFGHTL+SLRGIKYLYKYNVFQI F
Sbjct: 421 SFLFNVGLILLCSISVIQFCATAFGYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQIGF 480

Query: 481 VVLAGLTFVYYAAFGWRRKKPSGRFQLST 509
           V+LAGLTF+YY AFGWRRKK SGRFQLS+
Sbjct: 481 VILAGLTFLYYIAFGWRRKKTSGRFQLSS 509