Miyakogusa Predicted Gene

Lj1g3v2313120.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2313120.1 Non Chatacterized Hit- tr|I3T9K0|I3T9K0_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.32,0,HIGHMOBLTY12,NULL; no description,High mobility group,
superfamily; HMG_box,High mobility group,
sup,NODE_18835_length_687_cov_614.995605.path2.1
         (148 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G51880.3 | Symbols: HMGB1, NFD1 | high mobility group B1 | ch...    75   2e-14
AT3G51880.1 | Symbols: HMGB1, NFD1 | high mobility group B1 | ch...    75   2e-14
AT3G51880.4 | Symbols: HMGB1 | high mobility group B1 | chr3:192...    75   2e-14
AT3G51880.2 | Symbols: HMGB1, NFD1 | high mobility group B1 | ch...    75   2e-14
AT1G20693.3 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | high mob...    49   2e-06
AT1G20693.1 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | high mob...    49   2e-06
AT1G20693.2 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | high mob...    49   2e-06

>AT3G51880.3 | Symbols: HMGB1, NFD1 | high mobility group B1 |
           chr3:19247241-19248491 REVERSE LENGTH=178
          Length = 178

 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 53/118 (44%), Gaps = 1/118 (0%)

Query: 3   KGKKAGKTSKEVLKPVDDRKVGKRKA-AVXXXXXXXXXXXXXXXXXXXXXXXXSAFFVFL 61
           KGK   KT+KE LKPVDDRKVGKRKA A                         SAFFVFL
Sbjct: 5   KGKDKVKTTKEALKPVDDRKVGKRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFL 64

Query: 62  EDFRKTFKAENPNXXXXXXXXXXXXEKWKSLTXXXXXXXXXXXXXXXXXXXXLINAYN 119
           EDFR TFK ENPN            +KWKS++                     ++AYN
Sbjct: 65  EDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYN 122


>AT3G51880.1 | Symbols: HMGB1, NFD1 | high mobility group B1 |
           chr3:19247241-19248491 REVERSE LENGTH=178
          Length = 178

 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 53/118 (44%), Gaps = 1/118 (0%)

Query: 3   KGKKAGKTSKEVLKPVDDRKVGKRKA-AVXXXXXXXXXXXXXXXXXXXXXXXXSAFFVFL 61
           KGK   KT+KE LKPVDDRKVGKRKA A                         SAFFVFL
Sbjct: 5   KGKDKVKTTKEALKPVDDRKVGKRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFL 64

Query: 62  EDFRKTFKAENPNXXXXXXXXXXXXEKWKSLTXXXXXXXXXXXXXXXXXXXXLINAYN 119
           EDFR TFK ENPN            +KWKS++                     ++AYN
Sbjct: 65  EDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYN 122


>AT3G51880.4 | Symbols: HMGB1 | high mobility group B1 |
           chr3:19247241-19248491 REVERSE LENGTH=161
          Length = 161

 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 53/118 (44%), Gaps = 1/118 (0%)

Query: 3   KGKKAGKTSKEVLKPVDDRKVGKRKA-AVXXXXXXXXXXXXXXXXXXXXXXXXSAFFVFL 61
           KGK   KT+KE LKPVDDRKVGKRKA A                         SAFFVFL
Sbjct: 5   KGKDKVKTTKEALKPVDDRKVGKRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFL 64

Query: 62  EDFRKTFKAENPNXXXXXXXXXXXXEKWKSLTXXXXXXXXXXXXXXXXXXXXLINAYN 119
           EDFR TFK ENPN            +KWKS++                     ++AYN
Sbjct: 65  EDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYN 122


>AT3G51880.2 | Symbols: HMGB1, NFD1 | high mobility group B1 |
           chr3:19247241-19248491 REVERSE LENGTH=185
          Length = 185

 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 53/118 (44%), Gaps = 1/118 (0%)

Query: 3   KGKKAGKTSKEVLKPVDDRKVGKRKA-AVXXXXXXXXXXXXXXXXXXXXXXXXSAFFVFL 61
           KGK   KT+KE LKPVDDRKVGKRKA A                         SAFFVFL
Sbjct: 5   KGKDKVKTTKEALKPVDDRKVGKRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFL 64

Query: 62  EDFRKTFKAENPNXXXXXXXXXXXXEKWKSLTXXXXXXXXXXXXXXXXXXXXLINAYN 119
           EDFR TFK ENPN            +KWKS++                     ++AYN
Sbjct: 65  EDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYN 122


>AT1G20693.3 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | high
           mobility group B2 | chr1:7177282-7178487 FORWARD
           LENGTH=143
          Length = 143

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 30/67 (44%)

Query: 55  SAFFVFLEDFRKTFKAENPNXXXXXXXXXXXXEKWKSLTXXXXXXXXXXXXXXXXXXXXL 114
           SAFFVF+EDFR+TFK ENP             +KWKSL+                     
Sbjct: 43  SAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKN 102

Query: 115 INAYNNK 121
           I AYN K
Sbjct: 103 IKAYNKK 109


>AT1G20693.1 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | high
           mobility group B2 | chr1:7177282-7178487 FORWARD
           LENGTH=144
          Length = 144

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 30/67 (44%)

Query: 55  SAFFVFLEDFRKTFKAENPNXXXXXXXXXXXXEKWKSLTXXXXXXXXXXXXXXXXXXXXL 114
           SAFFVF+EDFR+TFK ENP             +KWKSL+                     
Sbjct: 43  SAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKN 102

Query: 115 INAYNNK 121
           I AYN K
Sbjct: 103 IKAYNKK 109


>AT1G20693.2 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | high
           mobility group B2 | chr1:7177282-7178487 FORWARD
           LENGTH=142
          Length = 142

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 30/67 (44%)

Query: 55  SAFFVFLEDFRKTFKAENPNXXXXXXXXXXXXEKWKSLTXXXXXXXXXXXXXXXXXXXXL 114
           SAFFVF+EDFR+TFK ENP             +KWKSL+                     
Sbjct: 43  SAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKN 102

Query: 115 INAYNNK 121
           I AYN K
Sbjct: 103 IKAYNKK 109