Miyakogusa Predicted Gene
- Lj1g3v2313060.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v2313060.1 Non Chatacterized Hit- tr|I1R565|I1R565_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,30.16,4e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.28871.1
(505 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G40070.1 | Symbols: | BEST Arabidopsis thaliana protein matc... 201 1e-51
AT2G40070.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 201 1e-51
AT3G09000.1 | Symbols: | proline-rich family protein | chr3:274... 144 1e-34
AT5G01280.1 | Symbols: | BEST Arabidopsis thaliana protein matc... 101 1e-21
AT2G38160.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 70 3e-12
AT2G38160.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 70 3e-12
AT1G27850.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 53 4e-07
AT3G08670.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 52 8e-07
>AT2G40070.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: proline-rich family protein (TAIR:AT3G09000.1); Has
35333 Blast hits to 34131 proteins in 2444 species:
Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi -
991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610
(source: NCBI BLink). | chr2:16728378-16731160 REVERSE
LENGTH=607
Length = 607
Score = 201 bits (511), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 130/272 (47%), Positives = 163/272 (59%), Gaps = 15/272 (5%)
Query: 239 RPSSASKARPIV--AKNPAQSRGISPSVKSRPWEPSQMPGYSLEAPPNLKTSLPERPASA 296
+PSS + A+P+ +KNPA SR SP+V+SRPW+PS MPG+SLE PPNL+T+LPERP SA
Sbjct: 339 KPSSPAPAKPMPTPSKNPALSRAASPTVRSRPWKPSDMPGFSLETPPNLRTTLPERPLSA 398
Query: 297 TRSRPGAQNTXXXX--XXXXXXXXXXXXXXXXXKGRA---STGFALLNYSSMQALSRARF 351
TR RPGA ++ +GRA S+G SS+ A++R
Sbjct: 399 TRGRPGAPSSRSGSVEPGGPPGGRPRRQSCSPSRGRAPMYSSG------SSVPAVNRGYS 452
Query: 352 TDGDHDSPGEVGTKMVERVVNMRKLAPPKREDXXXXXXXXXXXXXXXXXXXFGCTLSKTS 411
D+ SP +GTKMVERV+NMRKLAPP+ +D FG TLSK S
Sbjct: 453 KASDNVSPVMMGTKMVERVINMRKLAPPRSDDKGSPHGNLSAKSSSPDSAGFGRTLSKKS 512
Query: 412 LDMAKRHMDIRRSIQGNLRPVVTNIPASSTYNVRSASASKSRTISVSD-SPLATSSTAXX 470
LDMA RHMDIRR+I GNLRP++TNIPASS Y+VRS ++ R ++VSD SPLATSS A
Sbjct: 513 LDMAIRHMDIRRTIPGNLRPLMTNIPASSMYSVRSGH-TRGRPMNVSDSSPLATSSNASS 571
Query: 471 XXXXXXXXXXYDGSEIGENDFGSERGNSSPMS 502
+ E+D GSERG SP S
Sbjct: 572 EISVCNNNGICLEASEKEDDAGSERGCRSPAS 603
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 69/136 (50%), Gaps = 3/136 (2%)
Query: 2 VMKERDEELSLFLEMRRRXXXXXXXXXXXXXXXXXXXXXXXXXRGSSMISKTMILVPP-R 60
+M E+DEELSLFLEMRRR G+S + PP R
Sbjct: 27 MMAEKDEELSLFLEMRRREKEQDNLLLNNNPDEFETPLGSK--HGTSPVFNISSGAPPSR 84
Query: 61 KTGVEVFLNSENGKSEYEWLLTPPDSPRFPTLEKQSQISAKNDMETRNARPTALKPRVAN 120
K + FLNSE K++YEWLLTPP +P FP+LE +S + + +RP L R+AN
Sbjct: 85 KAAPDDFLNSEGDKNDYEWLLTPPGTPLFPSLEMESHRTMMSQTGDSKSRPATLTSRLAN 144
Query: 121 IQAEPAARSNAVSKNH 136
E AAR++ S+
Sbjct: 145 SSTESAARNHLTSRQQ 160
>AT2G40070.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 17 plant
structures; EXPRESSED DURING: 7 growth stages; BEST
Arabidopsis thaliana protein match is: proline-rich
family protein (TAIR:AT3G09000.1); Has 108635 Blast hits
to 60786 proteins in 2176 species: Archae - 287;
Bacteria - 15142; Metazoa - 39415; Fungi - 26849; Plants
- 4416; Viruses - 2864; Other Eukaryotes - 19662
(source: NCBI BLink). | chr2:16728378-16731040 REVERSE
LENGTH=567
Length = 567
Score = 201 bits (510), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 130/272 (47%), Positives = 163/272 (59%), Gaps = 15/272 (5%)
Query: 239 RPSSASKARPIV--AKNPAQSRGISPSVKSRPWEPSQMPGYSLEAPPNLKTSLPERPASA 296
+PSS + A+P+ +KNPA SR SP+V+SRPW+PS MPG+SLE PPNL+T+LPERP SA
Sbjct: 299 KPSSPAPAKPMPTPSKNPALSRAASPTVRSRPWKPSDMPGFSLETPPNLRTTLPERPLSA 358
Query: 297 TRSRPGAQNTXXXX--XXXXXXXXXXXXXXXXXKGRA---STGFALLNYSSMQALSRARF 351
TR RPGA ++ +GRA S+G SS+ A++R
Sbjct: 359 TRGRPGAPSSRSGSVEPGGPPGGRPRRQSCSPSRGRAPMYSSG------SSVPAVNRGYS 412
Query: 352 TDGDHDSPGEVGTKMVERVVNMRKLAPPKREDXXXXXXXXXXXXXXXXXXXFGCTLSKTS 411
D+ SP +GTKMVERV+NMRKLAPP+ +D FG TLSK S
Sbjct: 413 KASDNVSPVMMGTKMVERVINMRKLAPPRSDDKGSPHGNLSAKSSSPDSAGFGRTLSKKS 472
Query: 412 LDMAKRHMDIRRSIQGNLRPVVTNIPASSTYNVRSASASKSRTISVSD-SPLATSSTAXX 470
LDMA RHMDIRR+I GNLRP++TNIPASS Y+VRS ++ R ++VSD SPLATSS A
Sbjct: 473 LDMAIRHMDIRRTIPGNLRPLMTNIPASSMYSVRSGH-TRGRPMNVSDSSPLATSSNASS 531
Query: 471 XXXXXXXXXXYDGSEIGENDFGSERGNSSPMS 502
+ E+D GSERG SP S
Sbjct: 532 EISVCNNNGICLEASEKEDDAGSERGCRSPAS 563
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 47/79 (59%)
Query: 58 PPRKTGVEVFLNSENGKSEYEWLLTPPDSPRFPTLEKQSQISAKNDMETRNARPTALKPR 117
P RK + FLNSE K++YEWLLTPP +P FP+LE +S + + +RP L R
Sbjct: 42 PSRKAAPDDFLNSEGDKNDYEWLLTPPGTPLFPSLEMESHRTMMSQTGDSKSRPATLTSR 101
Query: 118 VANIQAEPAARSNAVSKNH 136
+AN E AAR++ S+
Sbjct: 102 LANSSTESAARNHLTSRQQ 120
>AT3G09000.1 | Symbols: | proline-rich family protein |
chr3:2746014-2748326 FORWARD LENGTH=541
Length = 541
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 134/259 (51%), Gaps = 28/259 (10%)
Query: 255 AQSRGISPS---VKSRPWEPSQMPGYSLEAPPNLKTSLPERPASATRSRPGAQNTXXXXX 311
A SRG SPS SRPW+P +MPG+SLEAPPNL+T+L +RP SA+R RPG +
Sbjct: 278 APSRGTSPSPTLNSSRPWKPPEMPGFSLEAPPNLRTTLADRPVSASRGRPGVASAPGSRS 337
Query: 312 XX---------XXXXXXXXXXXXXXKGRASTGFALLNYSSMQALSRARFTDG----DHDS 358
+GRA G N S RA+ ++G D+ S
Sbjct: 338 GSIERGGGPTSGGSGNARRQSCSPSRGRAPIGNT--NGSLTGVRGRAKASNGGSGCDNLS 395
Query: 359 PGEVGTKMVERVVNMRKLAPPKREDXXXXXXXXXXXXXXXXXXXFGCTLSKTSLDMAKRH 418
P +G KMVERVVNMRKL PP+ + +G LSK+S+DMA RH
Sbjct: 396 PVAMGNKMVERVVNMRKLGPPRLTENGGRGSGKSSSAFNSLG--YGRNLSKSSIDMAIRH 453
Query: 419 MDIRRSIQGNLRPVVTNIPASSTYNVRSASASKSRTISVSDSPLATSSTAXXXXXXXXXX 478
MDIRR + GNLRP+VT +PASS Y+VR SR SVS SP+ATSST
Sbjct: 454 MDIRRGMTGNLRPLVTKVPASSMYSVR------SRPGSVSSSPVATSSTVSSSDPSVDNI 507
Query: 479 X--XYDGSEIGENDFGSER 495
DG+E +D SER
Sbjct: 508 NILCLDGNEAENDDLLSER 526
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 75/147 (51%), Gaps = 8/147 (5%)
Query: 1 MVMKERDEELSLFLEMRRRXXXXXXXX--XXXXXXXXXXXXXXXXXRGSSMISKTM--IL 56
M+ +RDEELSLFLEMRRR S +S+T
Sbjct: 1 MLTHDRDEELSLFLEMRRREKEHRADSLLTGSDNVSINATLTAAAAAALSGVSETASSQR 60
Query: 57 VPPRKTGVEVFLNSENGKSEYEWLLTPPDSPRFPTLEKQSQISAKNDMETRNARPTALKP 116
P R+T E FL SEN KS+Y+WLLTPP +P+F EK+S S N + N+RPT LK
Sbjct: 61 YPLRRTAAENFLYSENEKSDYDWLLTPPGTPQF---EKESHRSVMNQHDAPNSRPTVLKS 117
Query: 117 RVANIQAE-PAARSNAVSKNHAAVTGL 142
R+ N + + + +N + ++V GL
Sbjct: 118 RLGNCREDIVSGNNNKPQTSSSSVAGL 144
>AT5G01280.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: proline-rich family protein (TAIR:AT3G09000.1); Has
1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants -
385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI
BLink). | chr5:114185-116237 REVERSE LENGTH=460
Length = 460
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 101/204 (49%), Gaps = 10/204 (4%)
Query: 254 PAQSRGISPSVKSRPWEPSQMPGYSLEAPPNLKTSLPERPASATRSRPGAQNTXXXXXXX 313
PA S SP V+SRPWEP +MPG+S+EAP NL+T+LP+RP +A+ SR A +
Sbjct: 224 PALSLEASPIVRSRPWEPYEMPGFSVEAPSNLRTTLPDRPQTASSSRTRAFDASSSSRSA 283
Query: 314 XXXXXXXXXXXXX-XKGRASTGFALLNYSSMQAL-SRARFTDGDHDSPGEVGTKMVERVV 371
+ RA G S++ ++ DG S G + VE+VV
Sbjct: 284 STERDVAKRQSCSPSRSRAPNGNVNGAVPSLRGQRAKTNNDDGRLISHAAKGNQKVEKVV 343
Query: 372 NMRKLAPPKREDXXXXXXXXXXXXXXXXXXXFGC-------TLSKTSLDMAKRHMDIRR- 423
NMRKLA P+ + G LSK+S+DMA RHMD+R+
Sbjct: 344 NMRKLATPRLTESGSRRLGGGGGDSSAGKSSSGSGGFGFGRNLSKSSIDMALRHMDVRKG 403
Query: 424 SIQGNLRPVVTNIPASSTYNVRSA 447
S+ GN R VT PA+S Y+VRS
Sbjct: 404 SMAGNFRHSVTKAPATSVYSVRSC 427
>AT2G38160.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 9 plant
structures; EXPRESSED DURING: 4 anthesis, F mature
embryo stage, petal differentiation and expansion stage,
E expanded cotyledon stage, D bilateral stage; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT2G40070.2). | chr2:15986643-15988464 REVERSE
LENGTH=314
Length = 314
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 46/76 (60%), Gaps = 14/76 (18%)
Query: 359 PGEVGTKMVERVVNMRKLAPPKREDXXXXXXXXXXXXXXXXXXXFGCTLSKTSLDMAKRH 418
P +GT+MVERVVNMRKL PPK +D FG TLS++SLDMA RH
Sbjct: 241 PVLMGTQMVERVVNMRKLPPPKHDDNTTLG--------------FGRTLSRSSLDMALRH 286
Query: 419 MDIRRSIQGNLRPVVT 434
M+IR S+ NLR V+
Sbjct: 287 MNIRHSVSKNLRVTVS 302
>AT2G38160.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G40070.2); Has 972 Blast hits to 731 proteins
in 211 species: Archae - 0; Bacteria - 236; Metazoa -
194; Fungi - 201; Plants - 218; Viruses - 32; Other
Eukaryotes - 91 (source: NCBI BLink). |
chr2:15986643-15988464 REVERSE LENGTH=314
Length = 314
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 46/76 (60%), Gaps = 14/76 (18%)
Query: 359 PGEVGTKMVERVVNMRKLAPPKREDXXXXXXXXXXXXXXXXXXXFGCTLSKTSLDMAKRH 418
P +GT+MVERVVNMRKL PPK +D FG TLS++SLDMA RH
Sbjct: 241 PVLMGTQMVERVVNMRKLPPPKHDDNTTLG--------------FGRTLSRSSLDMALRH 286
Query: 419 MDIRRSIQGNLRPVVT 434
M+IR S+ NLR V+
Sbjct: 287 MNIRHSVSKNLRVTVS 302
>AT1G27850.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: plasma membrane;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G40070.1); Has 9215 Blast
hits to 5316 proteins in 473 species: Archae - 6;
Bacteria - 773; Metazoa - 3392; Fungi - 1710; Plants -
539; Viruses - 143; Other Eukaryotes - 2652 (source:
NCBI BLink). | chr1:9699265-9703701 FORWARD LENGTH=1148
Length = 1148
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 38/50 (76%), Gaps = 2/50 (4%)
Query: 257 SRGISPSVKSRPWEPSQMPGYSLEAPPNLKTSLPERPASATR-SRPGAQN 305
SRG SPS K + W+ S +PG+SL+APPNL+TSL +RPAS R S P ++N
Sbjct: 234 SRGNSPSPKIKVWQ-SNIPGFSLDAPPNLRTSLGDRPASYVRGSSPASRN 282
>AT3G08670.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G51540.1); Has 48380 Blast hits to 29827
proteins in 1356 species: Archae - 46; Bacteria - 5589;
Metazoa - 17361; Fungi - 13192; Plants - 2237; Viruses -
905; Other Eukaryotes - 9050 (source: NCBI BLink). |
chr3:2633946-2636536 FORWARD LENGTH=567
Length = 567
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 66/165 (40%), Gaps = 29/165 (17%)
Query: 262 PSVKSRPWEPSQMPGYSLEAPPNLKTSLPERPASATRSRP-GAQNTXXXXXXXXXXXXXX 320
P V++ P +P + + L+ PPNL+TSLP+RP SA RSRP G +
Sbjct: 313 PRVRNTPQQPIVLADFPLDTPPNLRTSLPDRPISAGRSRPVGGSSMAKASPEPKGPITRR 372
Query: 321 XXXXXXXKGRASTGFALLNYSSMQALSRARF-TDGDH--DSPGEVGTKMVERVVNMRKLA 377
+GR + + + RF +G H D+P R+ N+
Sbjct: 373 NSSPIVTRGRLT-----------ETQGKGRFGGNGQHLTDAP------EPRRISNV---- 411
Query: 378 PPKREDXXXXXXXXXXXXXXXXXXXFGCTLSKTSLDMAKRHMDIR 422
D G + SK+SLDMA RHMDIR
Sbjct: 412 ----SDITSRRTVKTSTTVTDNNNGLGRSFSKSSLDMAIRHMDIR 452