Miyakogusa Predicted Gene

Lj1g3v2300720.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2300720.2 tr|A9RW32|A9RW32_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,50.65,0.00000000000005, ,CUFF.28837.2
         (91 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G47690.1 | Symbols:  | binding | chr5:19317899-19327014 FORWA...   122   4e-29
AT5G47690.2 | Symbols:  | binding | chr5:19317899-19327014 FORWA...   122   4e-29
AT5G47690.3 | Symbols:  | binding | chr5:19317899-19327014 FORWA...   122   4e-29

>AT5G47690.1 | Symbols:  | binding | chr5:19317899-19327014 FORWARD
           LENGTH=1605
          Length = 1605

 Score =  122 bits (307), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 59/87 (67%), Positives = 72/87 (82%), Gaps = 3/87 (3%)

Query: 5   LVKSYLPIKDALVRPGIDGLLDILRNMLSYGEISKDLKSSSVDKAHLRLTSAMAILRLSR 64
           LVKSYLP KDA +R G+D LL IL+N+LS+GE+S+DL+SSSVDKAHLRL +A A+LRLSR
Sbjct: 807 LVKSYLPFKDAQLRAGVDDLLGILKNILSFGEVSEDLESSSVDKAHLRLAAAKAVLRLSR 866

Query: 65  LWDHKIPADIFHLTLRTSEVMHSPFPA 91
            WD KIP +IFHLTL+T E+   PFP 
Sbjct: 867 HWDDKIPIEIFHLTLKTPEI---PFPT 890


>AT5G47690.2 | Symbols:  | binding | chr5:19317899-19327014 FORWARD
           LENGTH=1606
          Length = 1606

 Score =  122 bits (307), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 59/87 (67%), Positives = 72/87 (82%), Gaps = 3/87 (3%)

Query: 5   LVKSYLPIKDALVRPGIDGLLDILRNMLSYGEISKDLKSSSVDKAHLRLTSAMAILRLSR 64
           LVKSYLP KDA +R G+D LL IL+N+LS+GE+S+DL+SSSVDKAHLRL +A A+LRLSR
Sbjct: 807 LVKSYLPFKDAQLRAGVDDLLGILKNILSFGEVSEDLESSSVDKAHLRLAAAKAVLRLSR 866

Query: 65  LWDHKIPADIFHLTLRTSEVMHSPFPA 91
            WD KIP +IFHLTL+T E+   PFP 
Sbjct: 867 HWDDKIPIEIFHLTLKTPEI---PFPT 890


>AT5G47690.3 | Symbols:  | binding | chr5:19317899-19327014 FORWARD
           LENGTH=1607
          Length = 1607

 Score =  122 bits (307), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 59/87 (67%), Positives = 72/87 (82%), Gaps = 3/87 (3%)

Query: 5   LVKSYLPIKDALVRPGIDGLLDILRNMLSYGEISKDLKSSSVDKAHLRLTSAMAILRLSR 64
           LVKSYLP KDA +R G+D LL IL+N+LS+GE+S+DL+SSSVDKAHLRL +A A+LRLSR
Sbjct: 807 LVKSYLPFKDAQLRAGVDDLLGILKNILSFGEVSEDLESSSVDKAHLRLAAAKAVLRLSR 866

Query: 65  LWDHKIPADIFHLTLRTSEVMHSPFPA 91
            WD KIP +IFHLTL+T E+   PFP 
Sbjct: 867 HWDDKIPIEIFHLTLKTPEI---PFPT 890