Miyakogusa Predicted Gene

Lj1g3v2297620.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2297620.1 Non Chatacterized Hit- tr|E1ZP61|E1ZP61_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,35.26,4e-17,SUBFAMILY NOT NAMED,NULL; SYNTAXIN-18,NULL;
coiled-coil,NULL; Syntaxin-18_N,SNARE-complex protein Sy,CUFF.28865.1
         (198 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G51740.1 | Symbols: SYP81, ATUFE1, ATSYP81, UFE1 | syntaxin o...   281   3e-76

>AT1G51740.1 | Symbols: SYP81, ATUFE1, ATSYP81, UFE1 | syntaxin of
           plants 81 | chr1:19189063-19191188 FORWARD LENGTH=310
          Length = 310

 Score =  281 bits (718), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 132/179 (73%), Positives = 152/179 (84%)

Query: 1   MAKARDRTEDFKDAVRQSARSLGYDEAKLASILASFIIHKPPQRSPFYKAALKTLESIGE 60
           M++ RDRTEDFKD+VR SA S+GY+E+K+AS +ASFIIHKP +RSPF KAA KTL+SI E
Sbjct: 1   MSRFRDRTEDFKDSVRNSAVSIGYNESKVASTMASFIIHKPKERSPFTKAAFKTLDSIKE 60

Query: 61  LEQFLLKHRKDYTDLHRTTEQERDSIEQEVSAFIKTCQEQIDVLKNSINNEEETSKGWLG 120
           LE F+LKHRKDY DLHRTTEQE+DSIEQEV+AFIK C+EQID+L NSI NEE  SKGWLG
Sbjct: 61  LELFMLKHRKDYVDLHRTTEQEKDSIEQEVAAFIKACKEQIDILINSIRNEEANSKGWLG 120

Query: 121 IATAKANADTIAHKHGVVLILSERLHPVTAQFDQLRAVRFQDAINRATPRRKLSRVTRK 179
           +     NAD+IAHKHGVVLILSE+LH VTAQFDQLRA RFQD INRA PRRK  RV ++
Sbjct: 121 LPADNFNADSIAHKHGVVLILSEKLHSVTAQFDQLRATRFQDIINRAMPRRKPKRVIKE 179