Miyakogusa Predicted Gene

Lj1g3v2280620.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2280620.1 Non Chatacterized Hit- tr|I1JSW6|I1JSW6_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.19428 PE,93.43,0,WD40
repeats,WD40 repeat; WD40,WD40 repeat; no description,WD40/YVTN
repeat-like-containing domain; ,CUFF.28788.1
         (350 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G20540.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...   570   e-163
AT1G76260.1 | Symbols: DWA2 | DWD (DDB1-binding WD40 protein) hy...   531   e-151
AT2G16780.1 | Symbols: MSI2, MSI02, NFC02, NFC2 | Transducin fam...    64   2e-10
AT1G29260.1 | Symbols: PEX7, ATPEX7 | peroxin 7 | chr1:10224923-...    62   6e-10
AT4G35050.1 | Symbols: MSI3, NFC3 | Transducin family protein / ...    60   2e-09
AT5G58230.1 | Symbols: MSI1, MEE70, ATMSI1 | Transducin/WD40 rep...    50   2e-06
AT4G29730.1 | Symbols: NFC5, MSI5 | nucleosome/chromatin assembl...    49   5e-06

>AT1G20540.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr1:7112652-7115191 FORWARD LENGTH=351
          Length = 351

 Score =  570 bits (1470), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 268/350 (76%), Positives = 311/350 (88%), Gaps = 1/350 (0%)

Query: 1   MQAASSGIGYGPKYQARCISDVKADTDHTSFLAGTLSLKEENEVHLIRLSSSGTELFCEG 60
           MQ  SSGIGYG KYQ+RCISDVKADTD+TSFL GTLSLKEENEVHL+RLSS G+EL CEG
Sbjct: 1   MQGGSSGIGYGLKYQSRCISDVKADTDYTSFLTGTLSLKEENEVHLLRLSSGGSELICEG 60

Query: 61  LFSHPNEIWDLVSCPFDQRIFSTVYSNGEAYGAAIWQIPELYGELNSPQLERITSLDTDA 120
           LFSHPNEIWDL SCPFDQRIFSTV+S GE++GAAIWQIPELYG+LNSPQLER+ SLD   
Sbjct: 61  LFSHPNEIWDLASCPFDQRIFSTVFSTGESFGAAIWQIPELYGQLNSPQLERVASLDAHV 120

Query: 121 SKIKCILWWPSGRHDKLISINEENLCLWNLDVSKKTAQVQSKDSAGVLHKLSGGAWDPHD 180
            KI C+LWWPSGR DKLISI+E+N+ LW+LD SKK+A+V SKDSAG+LH LSGGAWDPHD
Sbjct: 121 GKINCVLWWPSGRCDKLISIDEQNIFLWSLDCSKKSAEVLSKDSAGMLHSLSGGAWDPHD 180

Query: 181 VNSVAATCESYLQFWDVRTMKKTNSIECSHVCGVDYDPCKKHILVTAEHESGIHVWDLRN 240
           VN+VAAT ES +QFWD+RTMKK NSIE +HV GVDY+P ++HILVTAE ESGIHVWDLR 
Sbjct: 181 VNAVAATGESSVQFWDLRTMKKVNSIEHAHVRGVDYNPKREHILVTAEDESGIHVWDLRK 240

Query: 241 PKVPLQELPGHTHWTWSVKCNPEYDGMILSAGTDSAVNLWLAS-TNLDELTTESQADSSS 299
            KVP+QELPGHTHWTW+V+CNPEYDG+ILSAGTDS VNLW AS T+ D+ T+ES  +S+ 
Sbjct: 241 AKVPVQELPGHTHWTWAVRCNPEYDGLILSAGTDSVVNLWYASATSSDDKTSESPVESTR 300

Query: 300 RWVDPLLNTYSDYEDSIYGLTWSSREPWIFASLSYDGRVVVESVKPFISK 349
           + V+PLLN+Y+DYEDS+YGL WSSREPW+FASLSYDGRV++ESVKPF+ +
Sbjct: 301 QRVNPLLNSYTDYEDSVYGLAWSSREPWVFASLSYDGRVIIESVKPFLPR 350


>AT1G76260.1 | Symbols: DWA2 | DWD (DDB1-binding WD40 protein)
           hypersensitive to ABA 2 | chr1:28610363-28612998 FORWARD
           LENGTH=350
          Length = 350

 Score =  531 bits (1368), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 250/350 (71%), Positives = 295/350 (84%)

Query: 1   MQAASSGIGYGPKYQARCISDVKADTDHTSFLAGTLSLKEENEVHLIRLSSSGTELFCEG 60
           MQ  SSGIGYG KYQARCISDVKAD DHTSFL GTLSLKEENEVHL+RLSS G+EL CEG
Sbjct: 1   MQGGSSGIGYGLKYQARCISDVKADRDHTSFLTGTLSLKEENEVHLLRLSSGGSELLCEG 60

Query: 61  LFSHPNEIWDLVSCPFDQRIFSTVYSNGEAYGAAIWQIPELYGELNSPQLERITSLDTDA 120
           LFSHPNEIWDL S PFDQRIFSTV+S G++YGAAIWQIPE YG+ NS  LE + SLD   
Sbjct: 61  LFSHPNEIWDLASSPFDQRIFSTVFSTGDSYGAAIWQIPEPYGQSNSSTLECVASLDAHV 120

Query: 121 SKIKCILWWPSGRHDKLISINEENLCLWNLDVSKKTAQVQSKDSAGVLHKLSGGAWDPHD 180
            KI C+LW PSG  DKLIS++E+NL  W+LD SKK+A+V SK+SAG+ H LSGGAW+PHD
Sbjct: 121 GKINCVLWCPSGNSDKLISMDEQNLVFWSLDSSKKSAEVLSKESAGMRHSLSGGAWNPHD 180

Query: 181 VNSVAATCESYLQFWDVRTMKKTNSIECSHVCGVDYDPCKKHILVTAEHESGIHVWDLRN 240
           VNSVAAT ES +QFWD+RTMKK NSIE +HV  VDY+  ++HILV+A+ ESGIH+WDLR 
Sbjct: 181 VNSVAATSESSIQFWDLRTMKKNNSIERAHVRNVDYNLKREHILVSADDESGIHLWDLRK 240

Query: 241 PKVPLQELPGHTHWTWSVKCNPEYDGMILSAGTDSAVNLWLASTNLDELTTESQADSSSR 300
            K P+QELPGHTHWTW+V+CNPEY+ +ILS GTDSAVNLW AS + +  T+ES  ++S +
Sbjct: 241 TKFPVQELPGHTHWTWAVRCNPEYEELILSVGTDSAVNLWFASASSEHKTSESPVEASRQ 300

Query: 301 WVDPLLNTYSDYEDSIYGLTWSSREPWIFASLSYDGRVVVESVKPFISKK 350
            V+PLLN+Y+DYEDS+YGL WSSREPWIFASLSYDGRVV+ESVKPF+ ++
Sbjct: 301 RVNPLLNSYTDYEDSVYGLAWSSREPWIFASLSYDGRVVIESVKPFLPRR 350


>AT2G16780.1 | Symbols: MSI2, MSI02, NFC02, NFC2 | Transducin family
           protein / WD-40 repeat family protein |
           chr2:7281615-7283583 REVERSE LENGTH=415
          Length = 415

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 97/218 (44%), Gaps = 8/218 (3%)

Query: 128 WWPSGRHDKLISINEENLCLWNLDVSKKTAQVQSKDS-AGVLHKLSGGAWDPHDVNSVAA 186
           W P      L    ++ +CLW++  + +   + +     G    ++  +W   + N   +
Sbjct: 176 WSPFKEGYLLSGSQDQKICLWDVSATPQDKVLNAMFVYEGHESAIADVSWHMKNENLFGS 235

Query: 187 TCE-SYLQFWDVRT--MKKTNSIECSHVCGVDYDPCKKHILVTAEHESGIHVWDLRNPKV 243
             E   L  WD RT  M+    +    V  + ++P  + +L TA  +S + ++DLR    
Sbjct: 236 AGEDGRLVIWDTRTNQMQHQVKVHEREVNYLSFNPFNEWVLATASSDSTVALFDLRKLNA 295

Query: 244 PLQELPGHTHWTWSVKCNPEYDGMILSAGTDSAVNLW-LASTNLDELTTESQADSSSRWV 302
           PL  +  H    + V+ +P ++ ++ S+G D  + +W L     ++L  E  A+      
Sbjct: 296 PLHVMSSHEGEVFQVEWDPNHETVLASSGEDRRLMVWDLNRVGEEQLEIELDAEDGP--- 352

Query: 303 DPLLNTYSDYEDSIYGLTWSSREPWIFASLSYDGRVVV 340
             LL ++  ++  I    W+  EPW+ AS++ D  + V
Sbjct: 353 PELLFSHGGHKAKISDFAWNKNEPWVIASVAEDNSLQV 390


>AT1G29260.1 | Symbols: PEX7, ATPEX7 | peroxin 7 |
           chr1:10224923-10225876 FORWARD LENGTH=317
          Length = 317

 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 87/185 (47%), Gaps = 10/185 (5%)

Query: 100 ELYGELNSPQLERITSLDTDASKIKCILWWPSGRHDKLISINEENLCLWNLDVSKKTAQV 159
           ++Y     P    I S    A +++ + + P+ R   L S  ++ + LW +D   + A V
Sbjct: 86  KIYDTALPPPSNPIRSFQEHAREVQSVDYNPTRRDSFLTSSWDDTVKLWAMD---RPASV 142

Query: 160 QS-KDSAGVLHKLSGGAWDP-HDVNSVAATCESYLQFWDVRTMKKTNSIECS--HVCGVD 215
           ++ K+ A  +++     W+P H     +A+ +  L+ WDVR    T  I      +   D
Sbjct: 143 RTFKEHAYCVYQ---AVWNPKHGDVFASASGDCTLRIWDVREPGSTMIIPAHDFEILSCD 199

Query: 216 YDPCKKHILVTAEHESGIHVWDLRNPKVPLQELPGHTHWTWSVKCNPEYDGMILSAGTDS 275
           ++     IL T+  +  + VWD+R+ +VPL  L GH +    VK +P    +I S   D 
Sbjct: 200 WNKYDDCILATSSVDKTVKVWDVRSYRVPLAVLNGHGYAVRKVKFSPHRRSLIASCSYDM 259

Query: 276 AVNLW 280
           +V LW
Sbjct: 260 SVCLW 264


>AT4G35050.1 | Symbols: MSI3, NFC3 | Transducin family protein /
           WD-40 repeat family protein | chr4:16682752-16684751
           REVERSE LENGTH=424
          Length = 424

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 103/221 (46%), Gaps = 11/221 (4%)

Query: 127 LWWPSGRHDKLIS-INEENLCLWNLDVSKKTAQVQSKDSAGVLHK--LSGGAWDPHDVNS 183
           L W S +   L+S   ++ +CLW++  +  T +V +       H+  +   AW   + N 
Sbjct: 175 LAWSSFKEGYLLSGSQDQRICLWDVSATA-TDKVLNPMHVYEGHQSIIEDVAWHMKNENI 233

Query: 184 VAATCES-YLQFWDVRT--MKKTNSIECSHVCGVDYDPCKKHILVTAEHESGIHVWDLRN 240
             +  +   L  WD+RT  M+    +    +  + ++P  + +L TA  +S + ++DLR 
Sbjct: 234 FGSAGDDCQLVIWDLRTNQMQHQVKVHEREINYLSFNPFNEWVLATASSDSTVALFDLRK 293

Query: 241 PKVPLQELPGHTHWTWSVKCNPEYDGMILSAGTDSAVNLW-LASTNLDELTTESQADSSS 299
              PL  L  H    + V+ +P ++ ++ S+G D  + +W +     ++L  E  A+   
Sbjct: 294 LTAPLHVLSKHEGEVFQVEWDPNHETVLASSGEDRRLMVWDINRVGDEQLEIELDAEDGP 353

Query: 300 RWVDPLLNTYSDYEDSIYGLTWSSREPWIFASLSYDGRVVV 340
                LL ++  ++  I    W+  EPW+ +S++ D  + V
Sbjct: 354 ---PELLFSHGGHKAKISDFAWNKDEPWVISSVAEDNSLQV 391


>AT5G58230.1 | Symbols: MSI1, MEE70, ATMSI1 | Transducin/WD40
           repeat-like superfamily protein | chr5:23556112-23557994
           FORWARD LENGTH=424
          Length = 424

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/220 (21%), Positives = 95/220 (43%), Gaps = 18/220 (8%)

Query: 127 LWWPSGRHDKLISINEE-NLCLWNLDVSKKT----AQVQSKDSAGVLHKLSGGAWD-PHD 180
           L W   +   L+S +++  +CLW+++ + K     AQ   K   GV+  +   AW   H+
Sbjct: 184 LSWSKFKQGHLLSGSDDAQICLWDINATPKNKSLDAQQIFKAHEGVVEDV---AWHLRHE 240

Query: 181 VNSVAATCESYLQFWDVRTMKKTNSIE--CSHVCGVD---YDPCKKHILVTAEHESGIHV 235
               +   + YL  WD+R+   +  ++   +H   V+   ++P  + ++ T   +  + +
Sbjct: 241 YLFGSVGDDQYLLIWDLRSPSASKPVQSVVAHSMEVNCLAFNPFNEWVVATGSTDKTVKL 300

Query: 236 WDLRNPKVPLQELPGHTHWTWSVKCNPEYDGMILSAGTDSAVNLWLASTNLDELTTESQA 295
           +DLR     L     H    + V  NP+ + ++ S      + +W  S   +E T E   
Sbjct: 301 FDLRKLSTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTVEDAE 360

Query: 296 DSSSRWVDPLLNTYSDYEDSIYGLTWSSREPWIFASLSYD 335
           D        LL  +  +   I   +W+  E W+ +S++ D
Sbjct: 361 DGPPE----LLFIHGGHTSKISDFSWNPCEDWVISSVAED 396


>AT4G29730.1 | Symbols: NFC5, MSI5 | nucleosome/chromatin assembly
           factor group C5 | chr4:14559255-14562522 REVERSE
           LENGTH=487
          Length = 487

 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 71/155 (45%), Gaps = 17/155 (10%)

Query: 189 ESYLQFWDVRT-----MKKTNSIECSHVCGVDYDPCKKHILVTAEHESGIHVWDLRN--- 240
           +S L  WD RT     MK   + +    C VD++P   ++++T   ++ + V+D RN   
Sbjct: 294 DSCLMLWDARTGTSPAMKVEKAHDADLHC-VDWNPHDNNLILTGSADNTVRVFDRRNLTS 352

Query: 241 --PKVPLQELPGHTHWTWSVKCNPEYDGMILSAGTDSAVNLWLASTNLDELTTESQADSS 298
                P+ +  GH      V+ +P+   +  S+  D  +N+W    + D +  +S+   +
Sbjct: 353 NGVGSPVYKFEGHRAAVLCVQWSPDKSSVFGSSAEDGLLNIW----DCDRVGKKSE--RA 406

Query: 299 SRWVDPLLNTYSDYEDSIYGLTWSSREPWIFASLS 333
           ++  D L   ++ + D +    WS   PW   S+S
Sbjct: 407 TKTPDGLFFQHAGHRDKVVDFHWSLLNPWTIVSVS 441