Miyakogusa Predicted Gene

Lj1g3v2279610.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2279610.1 Non Chatacterized Hit- tr|Q6YY99|Q6YY99_ORYSJ
Putative uncharacterized protein OJ1014_E02.22
OS=Oryz,63.79,0.0000000000008,seg,NULL,CUFF.28779.1
         (215 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G76250.1 | Symbols:  | unknown protein; INVOLVED IN: biologic...   238   2e-63

>AT1G76250.1 | Symbols:  | unknown protein; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; EXPRESSED IN: 6 plant structures; EXPRESSED
           DURING: 4 anthesis, petal differentiation and expansion
           stage; Has 74 Blast hits to 74 proteins in 16 species:
           Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants
           - 69; Viruses - 0; Other Eukaryotes - 4 (source: NCBI
           BLink). | chr1:28606561-28608942 REVERSE LENGTH=434
          Length = 434

 Score =  238 bits (608), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 110/155 (70%), Positives = 131/155 (84%)

Query: 61  LLRSRMAVCLVGGARRFELTGPSIIQNILKVYPISDLFLHSPLDNDAFKFSLLKSAPNVA 120
           L++S++AVCLVGGARRFELTGPSI++ IL+VYP +DLFL+SPLD ++FK  LLK AP +A
Sbjct: 88  LVKSKIAVCLVGGARRFELTGPSIMEKILRVYPNADLFLNSPLDKNSFKLRLLKDAPRLA 147

Query: 121 AVRIFHPQPLPENESYARVLTAHNSPNGIQGLIQYFNLVEGCLTMIKSHQERNNFTYDWI 180
            VRIF P+P+ E E   RVLT  NSPNGI+GL+QYFNLVEGC+TMIK++Q  NNFTYDWI
Sbjct: 148 WVRIFEPKPINETEPMVRVLTPMNSPNGIKGLLQYFNLVEGCITMIKAYQNENNFTYDWI 207

Query: 181 IRTRVDGYWNAPLRPENFVPSQYLVPSGSSYGGLN 215
           +RTRVDGYW  PL PE F+P QYLVP GSSYGGLN
Sbjct: 208 VRTRVDGYWADPLDPEYFIPGQYLVPPGSSYGGLN 242