Miyakogusa Predicted Gene
- Lj1g3v2268410.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v2268410.1 tr|Q8LCY3|Q8LCY3_ARATH At1g76185 OS=Arabidopsis
thaliana GN=At1g76185 PE=4 SV=1,84.06,2e-18,seg,NULL,CUFF.28769.1
(79 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G20460.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 67 2e-12
AT1G76185.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 64 2e-11
>AT1G20460.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G76185.1); Has 37 Blast hits to 37 proteins in
11 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:7091505-7092993 FORWARD
LENGTH=106
Length = 106
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/53 (67%), Positives = 38/53 (71%)
Query: 11 RVDVVVFVIWELVILAFLVFSVVSLYFKHIQLAFXXXXXXXXXXXXMKITKQV 63
RVDVVVFVIWELVILAF VFS VSLYFK +QLAF MK+TKQV
Sbjct: 38 RVDVVVFVIWELVILAFFVFSAVSLYFKRLQLAFILVCVTLLLLICMKVTKQV 90
>AT1G76185.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G20460.1); Has 37 Blast hits to 37 proteins in
11 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:28590497-28591157
FORWARD LENGTH=106
Length = 106
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 38/53 (71%)
Query: 11 RVDVVVFVIWELVILAFLVFSVVSLYFKHIQLAFXXXXXXXXXXXXMKITKQV 63
RVDVVVFVIWELV+LA +VFS VSLYF+ +QLAF MKITKQV
Sbjct: 38 RVDVVVFVIWELVMLALVVFSAVSLYFRRLQLAFILLCVTLLLLLCMKITKQV 90