Miyakogusa Predicted Gene

Lj1g3v2268410.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2268410.1 tr|Q8LCY3|Q8LCY3_ARATH At1g76185 OS=Arabidopsis
thaliana GN=At1g76185 PE=4 SV=1,84.06,2e-18,seg,NULL,CUFF.28769.1
         (79 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G20460.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    67   2e-12
AT1G76185.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    64   2e-11

>AT1G20460.1 | Symbols:  | unknown protein; BEST Arabidopsis
          thaliana protein match is: unknown protein
          (TAIR:AT1G76185.1); Has 37 Blast hits to 37 proteins in
          11 species: Archae - 0; Bacteria - 0; Metazoa - 0;
          Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes -
          0 (source: NCBI BLink). | chr1:7091505-7092993 FORWARD
          LENGTH=106
          Length = 106

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/53 (67%), Positives = 38/53 (71%)

Query: 11 RVDVVVFVIWELVILAFLVFSVVSLYFKHIQLAFXXXXXXXXXXXXMKITKQV 63
          RVDVVVFVIWELVILAF VFS VSLYFK +QLAF            MK+TKQV
Sbjct: 38 RVDVVVFVIWELVILAFFVFSAVSLYFKRLQLAFILVCVTLLLLICMKVTKQV 90


>AT1G76185.1 | Symbols:  | unknown protein; BEST Arabidopsis
          thaliana protein match is: unknown protein
          (TAIR:AT1G20460.1); Has 37 Blast hits to 37 proteins in
          11 species: Archae - 0; Bacteria - 0; Metazoa - 0;
          Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes -
          0 (source: NCBI BLink). | chr1:28590497-28591157
          FORWARD LENGTH=106
          Length = 106

 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/53 (64%), Positives = 38/53 (71%)

Query: 11 RVDVVVFVIWELVILAFLVFSVVSLYFKHIQLAFXXXXXXXXXXXXMKITKQV 63
          RVDVVVFVIWELV+LA +VFS VSLYF+ +QLAF            MKITKQV
Sbjct: 38 RVDVVVFVIWELVMLALVVFSAVSLYFRRLQLAFILLCVTLLLLLCMKITKQV 90