Miyakogusa Predicted Gene

Lj1g3v2268400.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2268400.1 Non Chatacterized Hit- tr|I1H8K9|I1H8K9_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,50,3e-17,seg,NULL,CUFF.28768.1
         (107 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G20460.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   104   1e-23
AT1G76185.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    99   4e-22

>AT1G20460.1 | Symbols:  | unknown protein; BEST Arabidopsis
          thaliana protein match is: unknown protein
          (TAIR:AT1G76185.1); Has 37 Blast hits to 37 proteins in
          11 species: Archae - 0; Bacteria - 0; Metazoa - 0;
          Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes -
          0 (source: NCBI BLink). | chr1:7091505-7092993 FORWARD
          LENGTH=106
          Length = 106

 Score =  104 bits (259), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/91 (62%), Positives = 60/91 (65%), Gaps = 1/91 (1%)

Query: 1  MITRSNLAEQLREYQIRSKHDWXXXXXXXXXXXXXXXXKVDVVVFVIWELVILAFLVFSV 60
          MITRSNLAEQLREYQIRSKHDW                +VDVVVFVIWELVILAF VFS 
Sbjct: 1  MITRSNLAEQLREYQIRSKHDWASVSFFSSTSNFSSS-RVDVVVFVIWELVILAFFVFSA 59

Query: 61 VSLYFKHIQLAFXXXXXXXXXXXXMKITKQV 91
          VSLYFK +QLAF            MK+TKQV
Sbjct: 60 VSLYFKRLQLAFILVCVTLLLLICMKVTKQV 90


>AT1G76185.1 | Symbols:  | unknown protein; BEST Arabidopsis
          thaliana protein match is: unknown protein
          (TAIR:AT1G20460.1); Has 37 Blast hits to 37 proteins in
          11 species: Archae - 0; Bacteria - 0; Metazoa - 0;
          Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes -
          0 (source: NCBI BLink). | chr1:28590497-28591157
          FORWARD LENGTH=106
          Length = 106

 Score = 99.4 bits (246), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 55/91 (60%), Positives = 60/91 (65%), Gaps = 1/91 (1%)

Query: 1  MITRSNLAEQLREYQIRSKHDWXXXXXXXXXXXXXXXXKVDVVVFVIWELVILAFLVFSV 60
          MITRSNLAEQLREYQIRSKHDW                +VDVVVFVIWELV+LA +VFS 
Sbjct: 1  MITRSNLAEQLREYQIRSKHDWASVSFFSSTSNFSSS-RVDVVVFVIWELVMLALVVFSA 59

Query: 61 VSLYFKHIQLAFXXXXXXXXXXXXMKITKQV 91
          VSLYF+ +QLAF            MKITKQV
Sbjct: 60 VSLYFRRLQLAFILLCVTLLLLLCMKITKQV 90