Miyakogusa Predicted Gene

Lj1g3v2268380.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2268380.1 Non Chatacterized Hit- tr|K3Y058|K3Y058_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si007569,47.47,2e-16,seg,NULL; coiled-coil,NULL,CUFF.28761.1
         (113 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G20430.1 | Symbols:  | unknown protein; Has 29 Blast hits to ...   105   6e-24

>AT1G20430.1 | Symbols:  | unknown protein; Has 29 Blast hits to 29
           proteins in 10 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr1:7083471-7083821 REVERSE LENGTH=116
          Length = 116

 Score =  105 bits (262), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 54/88 (61%), Positives = 62/88 (70%)

Query: 26  GFFANVIKRKDSFIQLFAMTGILLLSMRSLGQKYRIHGLEEDTHALREEHDSLNERMKNI 85
           GFF NV K K SF Q  AMTGILLLS RS+ QKYRIH LEEDT  L++E DSL +RM  I
Sbjct: 28  GFFENVKKNKQSFFQFAAMTGILLLSFRSVSQKYRIHDLEEDTAVLKKEQDSLTDRMSKI 87

Query: 86  KLGLRREASQDPTGLFASRLHALFDEQR 113
           K  L  +AS D +G+FASRL  LF E +
Sbjct: 88  KSDLLHQASIDSSGVFASRLRLLFGEDK 115