Miyakogusa Predicted Gene

Lj1g3v2264820.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2264820.1 Non Chatacterized Hit- tr|D8TJU3|D8TJU3_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,44.96,5e-19,seg,NULL; cyanin_plasto: plastocyanin,Plastocyanin;
COPPER_BLUE,Blue (type 1) copper domain; Copper-,CUFF.28771.1
         (167 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G20340.1 | Symbols: DRT112, PETE2 | Cupredoxin superfamily pr...   194   2e-50
AT1G76100.1 | Symbols: PETE1 | plastocyanin 1 | chr1:28554217-28...   186   6e-48

>AT1G20340.1 | Symbols: DRT112, PETE2 | Cupredoxin superfamily
           protein | chr1:7042770-7043273 REVERSE LENGTH=167
          Length = 167

 Score =  194 bits (493), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 95/167 (56%), Positives = 109/167 (65%)

Query: 1   MATVTSTAVAIPSFTGLXXXXXXXXXXXXXXXXXXQMPRLSVKASLKDFGXXXXXXXXXX 60
           MA+VTS  VAIPSFTGL                    P+L+VK+SLK+FG          
Sbjct: 1   MASVTSATVAIPSFTGLKASTIKSSATVRIQTAAVASPKLTVKSSLKNFGVAAVAAAASI 60

Query: 61  XXXXXXXXIEILLGSDDGGLAFVPNSFSVAPGEKITFKNNAGFPHNVVFDEDEVPGGVDA 120
                   IE+LLG  DG LAF+PN FS+A GEKI FKNNAG+PHNVVFDEDE+P GVD 
Sbjct: 61  ALAGNAMAIEVLLGGGDGSLAFIPNDFSIAKGEKIVFKNNAGYPHNVVFDEDEIPSGVDV 120

Query: 121 SKISMSDEDLLNAPGETYSVTLDAKGTYKFYCSPHQGAGMVGSVTVN 167
           +KISM ++DLLN  GETY V L   GTY FYC+PHQGAGMVG VTVN
Sbjct: 121 AKISMDEQDLLNGAGETYEVALTEPGTYSFYCAPHQGAGMVGKVTVN 167


>AT1G76100.1 | Symbols: PETE1 | plastocyanin 1 |
           chr1:28554217-28554732 REVERSE LENGTH=171
          Length = 171

 Score =  186 bits (472), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 94/171 (54%), Positives = 108/171 (63%), Gaps = 4/171 (2%)

Query: 1   MATVTSTAVAIPSFTGLXXXXXXXXXXXXXXXXXXQM----PRLSVKASLKDFGXXXXXX 56
           MA +TS  V IPSFTGL                        P+L++K+SLKDFG      
Sbjct: 1   MAAITSATVTIPSFTGLKLAVSSKPKTLSTISRSTSATRAPPKLALKSSLKDFGVIAVAT 60

Query: 57  XXXXXXXXXXXXIEILLGSDDGGLAFVPNSFSVAPGEKITFKNNAGFPHNVVFDEDEVPG 116
                       +E+LLGSDDG LAFVP+ F+VA GEKI FKNNAGFPHNVVFDEDE+P 
Sbjct: 61  AASIVLAGNAMAMEVLLGSDDGSLAFVPSEFTVAKGEKIVFKNNAGFPHNVVFDEDEIPS 120

Query: 117 GVDASKISMSDEDLLNAPGETYSVTLDAKGTYKFYCSPHQGAGMVGSVTVN 167
           GVDASKISM +  LLN  GETY VTL   G+Y FYC+PHQGAGMVG +TV 
Sbjct: 121 GVDASKISMDETALLNGAGETYEVTLTEPGSYGFYCAPHQGAGMVGKLTVK 171