Miyakogusa Predicted Gene

Lj1g3v2251630.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2251630.1 tr|G7J5W8|G7J5W8_MEDTR Syringolide-induced
protein 14-1-1 OS=Medicago truncatula GN=MTR_3g114750 PE=,60.44,2e-18,
,CUFF.28731.1
         (120 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G76070.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    47   4e-06

>AT1G76070.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: plasma membrane;
           EXPRESSED IN: 8 plant structures; EXPRESSED DURING:
           LP.04 four leaves visible, 4 anthesis, petal
           differentiation and expansion stage; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G20310.1); Has 66 Blast hits to 66 proteins in
           15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 2; Plants - 64; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr1:28546617-28547435 FORWARD
           LENGTH=272
          Length = 272

 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 18/92 (19%)

Query: 32  PFSSGRDHKSSPENNATKWVRLHGGMGFSKPVVPMIPVEAR--RKLEDSIGDNGIEIYNQ 89
           PFS GRD   +  +N T   +    M FS P+VP++P  AR  R   D++ D        
Sbjct: 34  PFSPGRDLHHNNHHNYTAANK----MFFSGPMVPLVPNAARVRRNKSDAVWD-------- 81

Query: 90  EPPSPEISCMGQITYNK----TNQKEPRPNSI 117
           EP SP++SC+GQI   K    T +K   P+S+
Sbjct: 82  EPTSPKVSCIGQIKLGKSKCPTGKKNKAPSSL 113