Miyakogusa Predicted Gene

Lj1g3v2251580.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2251580.1 Non Chatacterized Hit- tr|I1JSZ4|I1JSZ4_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.1351 PE=,76.24,0,S4
RNA-binding domain,RNA-binding S4 domain; no description,RNA-binding
S4 domain; S4,RNA-binding S4,CUFF.28745.1
         (294 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G76050.1 | Symbols:  | Pseudouridine synthase family protein ...   318   3e-87
AT1G76050.2 | Symbols:  | Pseudouridine synthase family protein ...   318   4e-87
AT3G52260.1 | Symbols:  | Pseudouridine synthase family protein ...    51   8e-07
AT3G52260.2 | Symbols:  | Pseudouridine synthase family protein ...    51   1e-06
AT5G51140.1 | Symbols:  | Pseudouridine synthase family protein ...    49   4e-06
AT5G51140.2 | Symbols:  | Pseudouridine synthase family protein ...    48   6e-06

>AT1G76050.1 | Symbols:  | Pseudouridine synthase family protein |
           chr1:28540858-28542019 FORWARD LENGTH=313
          Length = 313

 Score =  318 bits (815), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 162/237 (68%), Positives = 192/237 (81%), Gaps = 9/237 (3%)

Query: 60  PRANYAGVQLEEIVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKV 119
           PR N AG+++EEIVD     GK RLDSWIS+RING+SRARVQSSI+ GLV VNGRVV+KV
Sbjct: 62  PRVNNAGLRIEEIVDA--AKGKIRLDSWISSRINGVSRARVQSSIRLGLVTVNGRVVDKV 119

Query: 120 SFNVKSGDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTL 179
           S NVKSGDE+ CTI+ELQ L+A  EDIPLDIVYED+H+LV+NKPAHMVVHPAPGN +GTL
Sbjct: 120 SHNVKSGDEVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNPTGTL 179

Query: 180 VNGILHHCNLPNAEFSNEDALAYTED---SDDELNSFFQASSCEGSAASIRPGIVHRLDK 236
           VNGILHHC+LP  ++SN +    +++   SDDE       +S    AAS+RPGIVHRLDK
Sbjct: 180 VNGILHHCSLPCVDYSNSEEDDDSDEETFSDDE----EMTTSPSSYAASVRPGIVHRLDK 235

Query: 237 GTSGLLVVAKDEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
           GT+GLLVVAKDEHSH  L+EQFKL TI+RVYVSLT GVP+P  GRIE+ +GRD +NR
Sbjct: 236 GTTGLLVVAKDEHSHAHLAEQFKLHTIERVYVSLTTGVPSPPQGRIEIPIGRDSSNR 292


>AT1G76050.2 | Symbols:  | Pseudouridine synthase family protein |
           chr1:28540858-28542826 FORWARD LENGTH=430
          Length = 430

 Score =  318 bits (814), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 162/237 (68%), Positives = 192/237 (81%), Gaps = 9/237 (3%)

Query: 60  PRANYAGVQLEEIVDNRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKV 119
           PR N AG+++EEIVD     GK RLDSWIS+RING+SRARVQSSI+ GLV VNGRVV+KV
Sbjct: 62  PRVNNAGLRIEEIVDA--AKGKIRLDSWISSRINGVSRARVQSSIRLGLVTVNGRVVDKV 119

Query: 120 SFNVKSGDEIKCTIAELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTL 179
           S NVKSGDE+ CTI+ELQ L+A  EDIPLDIVYED+H+LV+NKPAHMVVHPAPGN +GTL
Sbjct: 120 SHNVKSGDEVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNPTGTL 179

Query: 180 VNGILHHCNLPNAEFSNEDALAYTED---SDDELNSFFQASSCEGSAASIRPGIVHRLDK 236
           VNGILHHC+LP  ++SN +    +++   SDDE       +S    AAS+RPGIVHRLDK
Sbjct: 180 VNGILHHCSLPCVDYSNSEEDDDSDEETFSDDE----EMTTSPSSYAASVRPGIVHRLDK 235

Query: 237 GTSGLLVVAKDEHSHKKLSEQFKLRTIKRVYVSLTIGVPTPVAGRIEVAVGRDPNNR 293
           GT+GLLVVAKDEHSH  L+EQFKL TI+RVYVSLT GVP+P  GRIE+ +GRD +NR
Sbjct: 236 GTTGLLVVAKDEHSHAHLAEQFKLHTIERVYVSLTTGVPSPPQGRIEIPIGRDSSNR 292


>AT3G52260.1 | Symbols:  | Pseudouridine synthase family protein |
           chr3:19383983-19386440 REVERSE LENGTH=294
          Length = 294

 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 33/157 (21%)

Query: 104 IKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAVPEDIP--LDIVYEDEHLLVIN 161
           I++G + ++G VV   +  ++SG ++  +      L     D P  L+++YED+ L+ +N
Sbjct: 56  IQNGQIQIDGEVVKDPNTLLRSGSKLVYS-----RLPWKEPDTPYSLEVLYEDDDLIALN 110

Query: 162 KPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAYTEDSDDELNSFFQASSCEG 221
           KP+ + V                    LP   F     L   +        F +  S  G
Sbjct: 111 KPSGLQV--------------------LPGGLFQQRTVLTQLQ------WCFGKNDSYIG 144

Query: 222 SAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQF 258
           S  S  P  VHRL +GTSG+L+ AK + +  KL+  F
Sbjct: 145 SRESPHPVPVHRLGRGTSGILLCAKTKLAKTKLAAYF 181


>AT3G52260.2 | Symbols:  | Pseudouridine synthase family protein |
           chr3:19383452-19386440 REVERSE LENGTH=369
          Length = 369

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 33/157 (21%)

Query: 104 IKSGLVHVNGRVVNKVSFNVKSGDEIKCTIAELQSLRAVPEDIP--LDIVYEDEHLLVIN 161
           I++G + ++G VV   +  ++SG ++  +      L     D P  L+++YED+ L+ +N
Sbjct: 56  IQNGQIQIDGEVVKDPNTLLRSGSKLVYS-----RLPWKEPDTPYSLEVLYEDDDLIALN 110

Query: 162 KPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEFSNEDALAYTEDSDDELNSFFQASSCEG 221
           KP+ + V                    LP   F     L   +        F +  S  G
Sbjct: 111 KPSGLQV--------------------LPGGLFQQRTVLTQLQ------WCFGKNDSYIG 144

Query: 222 SAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKLSEQF 258
           S  S  P  VHRL +GTSG+L+ AK + +  KL+  F
Sbjct: 145 SRESPHPVPVHRLGRGTSGILLCAKTKLAKTKLAAYF 181


>AT5G51140.1 | Symbols:  | Pseudouridine synthase family protein |
           chr5:20784277-20786793 REVERSE LENGTH=395
          Length = 395

 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 89/200 (44%), Gaps = 41/200 (20%)

Query: 75  NRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIA 134
           N+  +GK  +D + +    G  R     ++KSG + V+G +V  VS+ VKS  +I   + 
Sbjct: 68  NKRWTGKTIVDLF-ADEFKGRPRDYYVGAVKSGRIKVDGEIV-PVSYIVKSSQKITHFLH 125

Query: 135 ELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEF 194
             +    + + +   I++++  ++ + KPA + VHP       T+V GIL          
Sbjct: 126 RHEPPVMIDDVV---ILHQEPDVVTVCKPASVPVHPCGQYRKNTIV-GIL---------- 171

Query: 195 SNEDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKL 254
                     D++ +L + F                +HRLD+  SGLL++A+        
Sbjct: 172 ----------DAEHDLGTLFP---------------IHRLDRLVSGLLIIARTAAKADFF 206

Query: 255 SEQFKLRTIKRVYVSLTIGV 274
            +Q +   +K+ Y++  IGV
Sbjct: 207 RQQIEGGMVKKRYIAKVIGV 226


>AT5G51140.2 | Symbols:  | Pseudouridine synthase family protein |
           chr5:20784103-20786793 REVERSE LENGTH=410
          Length = 410

 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 89/200 (44%), Gaps = 41/200 (20%)

Query: 75  NRIGSGKPRLDSWISTRINGISRARVQSSIKSGLVHVNGRVVNKVSFNVKSGDEIKCTIA 134
           N+  +GK  +D + +    G  R     ++KSG + V+G +V  VS+ VKS  +I   + 
Sbjct: 68  NKRWTGKTIVDLF-ADEFKGRPRDYYVGAVKSGRIKVDGEIV-PVSYIVKSSQKITHFLH 125

Query: 135 ELQSLRAVPEDIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNAEF 194
             +    + + +   I++++  ++ + KPA + VHP       T+V GIL          
Sbjct: 126 RHEPPVMIDDVV---ILHQEPDVVTVCKPASVPVHPCGQYRKNTIV-GIL---------- 171

Query: 195 SNEDALAYTEDSDDELNSFFQASSCEGSAASIRPGIVHRLDKGTSGLLVVAKDEHSHKKL 254
                     D++ +L + F                +HRLD+  SGLL++A+        
Sbjct: 172 ----------DAEHDLGTLFP---------------IHRLDRLVSGLLIIARTAAKADFF 206

Query: 255 SEQFKLRTIKRVYVSLTIGV 274
            +Q +   +K+ Y++  IGV
Sbjct: 207 RQQIEGGMVKKRYIAKVIGV 226