Miyakogusa Predicted Gene

Lj1g3v2249530.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2249530.1 Non Chatacterized Hit- tr|B8B9E1|B8B9E1_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,52.87,0.00000000000002,"Winged helix" DNA-binding domain,NULL;
no description,Winged helix-turn-helix transcription
repress,CUFF.28757.1
         (439 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G20200.1 | Symbols: EMB2719, HAP15 | PAM domain (PCI/PINT ass...   665   0.0  
AT1G75990.1 | Symbols:  | PAM domain (PCI/PINT associated module...   662   0.0  

>AT1G20200.1 | Symbols: EMB2719, HAP15 | PAM domain (PCI/PINT
           associated module) protein | chr1:7001409-7004154
           REVERSE LENGTH=488
          Length = 488

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/437 (75%), Positives = 360/437 (82%), Gaps = 5/437 (1%)

Query: 1   MTQDLEMKDRXXXXXXXXXXXXXXLHHLKEIASLIETGSYSKEVRRIARAVRLTIQLRRK 60
           MTQD+EMKD               + +LKEIA+LI+TGSY+KEVRRIARAVRLTI LR+K
Sbjct: 1   MTQDVEMKDNNTPSQSIISSSTSTMQNLKEIAALIDTGSYTKEVRRIARAVRLTIGLRQK 60

Query: 61  LTASIISSFLDHVLTPGSEAHAKLSAYLPKEDDHEMEVDXXXXXXXXXXXXXXPAKHLLP 120
           LT S++SSFLD  L PGSEAH++LS+++PK D+H+MEVD              P+KHL  
Sbjct: 61  LTGSVLSSFLDFALVPGSEAHSRLSSFVPKGDEHDMEVDTASSATQAA-----PSKHLPA 115

Query: 121 ELEIYSYLLVLLFLIDQKRYNEAKACSSASVAWLKNVNRRTVDVIASRLYFYYSYSYELT 180
           ELEIY Y +VLLFLIDQK+YNEAKACSSAS+A LKNVNRRT+DVIASRLYFYYS SYE T
Sbjct: 116 ELEIYCYFIVLLFLIDQKKYNEAKACSSASIARLKNVNRRTIDVIASRLYFYYSLSYEQT 175

Query: 181 GDLAEIRGNLLALHRIATLRHDELGQETXXXXXXXXXXXXXXXDQAEKLRSKAPRFEAHS 240
           GDLAEIRG LLALH  ATLRHDELGQET               DQAEKLRSKAPRFEAHS
Sbjct: 176 GDLAEIRGTLLALHHSATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHS 235

Query: 241 NQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAARGFRIQCNKWAVIVRLLLGEI 300
           NQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAP+AA GFRIQCNKWA++VRLLLGEI
Sbjct: 236 NQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPIAALGFRIQCNKWAILVRLLLGEI 295

Query: 301 PERTVFMQKGMENALRPYFELTNAVRIGDLELFRNIADKFATTFNADGTHNLIVRLRHIV 360
           PER++F QKGME ALRPYFELTNAVRIGDLELFR + +KF  TF  D THNLIVRLRH V
Sbjct: 296 PERSIFTQKGMEKALRPYFELTNAVRIGDLELFRTVQEKFLDTFAQDRTHNLIVRLRHNV 355

Query: 361 IRTGLRNISISYSRISLADVARKLRLNSASPVADAESIVSKAIRDGAIDATLDHANGWMV 420
           IRTGLRNISISYSRISL DVA+KLRLNS +PVADAESIV+KAIRDGAIDAT+DH NG MV
Sbjct: 356 IRTGLRNISISYSRISLPDVAKKLRLNSENPVADAESIVAKAIRDGAIDATIDHKNGCMV 415

Query: 421 SKETGDIYSTNEPQLAF 437
           SKETGDIYSTNEPQ AF
Sbjct: 416 SKETGDIYSTNEPQTAF 432


>AT1G75990.1 | Symbols:  | PAM domain (PCI/PINT associated module)
           protein | chr1:28524623-28526718 REVERSE LENGTH=487
          Length = 487

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/437 (75%), Positives = 356/437 (81%), Gaps = 6/437 (1%)

Query: 1   MTQDLEMKDRXXXXXXXXXXXXXXLHHLKEIASLIETGSYSKEVRRIARAVRLTIQLRRK 60
           MTQD+EMKD               L +LKEIA+LI+TGSY+KEVRRIARAVRLT+ LRRK
Sbjct: 1   MTQDVEMKDNQTPTQSVVSAPTSTLQNLKEIAALIDTGSYTKEVRRIARAVRLTVGLRRK 60

Query: 61  LTASIISSFLDHVLTPGSEAHAKLSAYLPKEDDHEMEVDXXXXXXXXXXXXXXPAKHLLP 120
           LT S+ISSFLD  L PGSEAH +LS+++PK D+H+MEVD              P KHL  
Sbjct: 61  LTGSVISSFLDFALVPGSEAHTRLSSFVPKSDEHDMEVDTASSNSQA------PPKHLPA 114

Query: 121 ELEIYSYLLVLLFLIDQKRYNEAKACSSASVAWLKNVNRRTVDVIASRLYFYYSYSYELT 180
           ELEIY Y +VLLFLIDQK+YNEAK CS+AS+A LK+VNRRTVDVIAS+LYFYYS SYELT
Sbjct: 115 ELEIYCYFIVLLFLIDQKKYNEAKVCSTASIARLKSVNRRTVDVIASKLYFYYSLSYELT 174

Query: 181 GDLAEIRGNLLALHRIATLRHDELGQETXXXXXXXXXXXXXXXDQAEKLRSKAPRFEAHS 240
            DLAEIR  LLALH  ATLRHDELGQET               DQAEKLRSKAPRFEAHS
Sbjct: 175 NDLAEIRSTLLALHHSATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHS 234

Query: 241 NQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAARGFRIQCNKWAVIVRLLLGEI 300
           NQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA+ GFRIQCNKWA+IVRLLLGEI
Sbjct: 235 NQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVASLGFRIQCNKWAIIVRLLLGEI 294

Query: 301 PERTVFMQKGMENALRPYFELTNAVRIGDLELFRNIADKFATTFNADGTHNLIVRLRHIV 360
           PER++F QKGME  LRPYFELTNAVRIGDLELF  I +KFA TF  D THNLIVRLRH V
Sbjct: 295 PERSIFTQKGMEKTLRPYFELTNAVRIGDLELFGKIQEKFAKTFAEDRTHNLIVRLRHNV 354

Query: 361 IRTGLRNISISYSRISLADVARKLRLNSASPVADAESIVSKAIRDGAIDATLDHANGWMV 420
           IRTGLRNISISYSRISL DVA+KLRLNSA+PVADAESIV+KAIRDGAIDAT+DH NG MV
Sbjct: 355 IRTGLRNISISYSRISLQDVAQKLRLNSANPVADAESIVAKAIRDGAIDATIDHKNGCMV 414

Query: 421 SKETGDIYSTNEPQLAF 437
           SKETGDIYSTNEPQ AF
Sbjct: 415 SKETGDIYSTNEPQTAF 431