Miyakogusa Predicted Gene

Lj1g3v2217460.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2217460.1 Non Chatacterized Hit- tr|I3MBX5|I3MBX5_SPETR
Uncharacterized protein (Fragment) OS=Spermophilus
tri,44.04,2e-18,La,RNA-binding protein Lupus La; seg,NULL; Domain in
the RNA-binding Lupus La protein;,RNA-binding p,CUFF.28719.1
         (507 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G35890.1 | Symbols:  | winged-helix DNA-binding transcription...   144   2e-34
AT5G66100.1 | Symbols:  | winged-helix DNA-binding transcription...   122   7e-28
AT5G21160.1 | Symbols:  | LA RNA-binding protein | chr5:7199191-...   120   2e-27
AT5G21160.2 | Symbols:  | LA RNA-binding protein | chr5:7198817-...   120   3e-27
AT5G21160.3 | Symbols:  | LA RNA-binding protein | chr5:7198817-...   120   3e-27
AT5G46250.1 | Symbols:  | RNA-binding protein | chr5:18755388-18...    66   7e-11
AT5G46250.2 | Symbols:  | RNA-binding protein | chr5:18755388-18...    64   2e-10
AT5G46250.3 | Symbols:  | RNA-binding protein | chr5:18755388-18...    64   3e-10
AT3G19090.1 | Symbols:  | RNA-binding protein | chr3:6601466-660...    53   5e-07

>AT4G35890.1 | Symbols:  | winged-helix DNA-binding transcription
           factor family protein | chr4:16997433-17000410 FORWARD
           LENGTH=523
          Length = 523

 Score =  144 bits (362), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 119/380 (31%), Positives = 169/380 (44%), Gaps = 70/380 (18%)

Query: 82  PPSDVAEVSPVMGAVSWPALSEAAKLSVKPXXXXXXXXXXXXXXQGPVTPHSPQTQANSN 141
           P +  +EV PVMGA SWPALSE  K                       +   P TQ  +N
Sbjct: 119 PSNGASEVGPVMGASSWPALSETTKAPSNKSSSDSLKSLGDVPSSSSASSSVPVTQGIAN 178

Query: 142 SNVKPSPAMNTDMPN------RQRSTKQ-----GGSNSNGPAP-VRGNFTNTAXXXXXXX 189
           ++V          PN      RQRS KQ     G +N     P  +G+FT          
Sbjct: 179 ASVPAPKQAGRANPNPTPNHSRQRSFKQRNGASGSANGTVSQPSAQGSFTELPSHN---- 234

Query: 190 XXXXXXXXXXXXXXXXSFTNGVPGPSPRDPFRNNNWDTRSPVGGFGPPMNEQRSPSRRGN 249
                                   PSPR   + N + +++  G          +PS+R +
Sbjct: 235 ------------------------PSPRGQNQKNGFASQNHGG--------TENPSQRDS 262

Query: 250 FGHHPRGGNGSHHNNYDNRRDQERLNYA-------NSRDARAPQQRMSPRGLMRFPPANA 302
           +    R  NG+HH ++  RR+QE  N         N R+  A  QR +P   +R P    
Sbjct: 263 Y----RNQNGNHHQSHGGRRNQEHGNQNWTFQRSFNGREGNAQSQRGTP-AFVRHPSPTV 317

Query: 303 APPFMGPQPLQPFLNPAGFPEFYYFPTLQLES--FGRMPFFTHAP-PPAMFFPVAETPLT 359
                  QP+  F+    FP    FPT   +S  + RMP+ T  P  P  F+   + PL 
Sbjct: 318 -------QPIPQFMAAQPFPSHIPFPTELAQSSYYPRMPYMTPIPHGPQFFYHYQDPPLH 370

Query: 360 DVIIKQIDYYFSDTNLVKDNYLRSNMDEQGWVPITLIANFPRVKSLTSNVELILDSLKTS 419
             + KQI YYFSD NL+ D YLR  M+ +G+VP+ ++A F +V  LT N++ I+++L+ S
Sbjct: 371 MKLHKQIQYYFSDENLITDIYLRGFMNNEGFVPLRVVAGFKKVAELTDNIQQIVEALQNS 430

Query: 420 SVVEVQGDKLRKRDDWMKWL 439
             VEVQGD +RKRD+W  W+
Sbjct: 431 PHVEVQGDFIRKRDNWQNWV 450


>AT5G66100.1 | Symbols:  | winged-helix DNA-binding transcription
           factor family protein | chr5:26427639-26429772 FORWARD
           LENGTH=453
          Length = 453

 Score =  122 bits (305), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 85/244 (34%), Positives = 129/244 (52%), Gaps = 20/244 (8%)

Query: 242 RSPSRRGNFGHHPRGGNGSHHNNYDNRRDQERLNYA-------NSRDARAPQQR----MS 290
           R+  R  N   +PRG  G HH N   RR+ E  N +       + RD     QR    + 
Sbjct: 211 RNSQRNRNSSSYPRG-EGLHHGN---RRNYEHGNQSGFSHRNYSGRDMHLQPQRGVGMIR 266

Query: 291 PRGLMRFP--PANAAPPFMGPQPLQPFLNPAGFPEFYYFPTLQLESFGRMPFFTHAPPPA 348
           P+ LM  P  PA++A     PQ L  +  P  +P++     +   S   M      P   
Sbjct: 267 PQMLMGPPSFPASSAQYMAAPQ-LGSYGGPIIYPDYAQHVFMPHPSPDPMGLVGPFPLQP 325

Query: 349 MFFPVAETPLTDVIIKQIDYYFSDTNLVKDNYLRSNMDEQGWVPITLIANFPRVKSLTSN 408
           M+F   +  L + I+ Q++YYFS  NL +D +LR  M+++GWVP+ +IA F R+  LT+N
Sbjct: 326 MYFRNFDAILYNKILTQVEYYFSADNLSRDEHLRDQMNDEGWVPVRVIAAFRRLAELTNN 385

Query: 409 VELILDSLKTSSVVEVQGDKLRKRDDWMKWLPSTQREVDSSSMSTGESNYNNIARDFEKI 468
           ++ IL++L++S VVE+QG+ LR+R DW K+L    RE   S  + G SN  ++    E +
Sbjct: 386 IQTILEALRSSEVVEIQGETLRRRGDWDKYL--LPREPSRSGPAAGASNNASLVSQIESM 443

Query: 469 TLNE 472
           TL+E
Sbjct: 444 TLSE 447


>AT5G21160.1 | Symbols:  | LA RNA-binding protein |
           chr5:7199191-7203879 REVERSE LENGTH=826
          Length = 826

 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/191 (38%), Positives = 102/191 (53%), Gaps = 30/191 (15%)

Query: 281 DARAPQQRMSPRGLMRFPPANAAPPFMGPQPLQPFL---NPAGFPEFYYFPTLQLESFGR 337
           D R   Q   PR   R       PPFMGP P   FL    P      YY P       G 
Sbjct: 203 DPRNMPQGAGPRNFGR-------PPFMGPAP--GFLVGPGPGFPGPVYYLP-------GP 246

Query: 338 MPFFTHAPPPAMF--FPVAETP---------LTDVIIKQIDYYFSDTNLVKDNYLRSNMD 386
            P     P P  F  +PV + P         L D ++KQ++YYFSD NL  D+YL S MD
Sbjct: 247 PPGAIRGPYPPRFAPYPVNQGPPILSPEKLDLRDRVLKQVEYYFSDENLENDHYLISLMD 306

Query: 387 EQGWVPITLIANFPRVKSLTSNVELILDSLKTSSVVEVQGDKLRKRDDWMKWLPSTQREV 446
           E+GWVP  +IA F RVK++T +V+ I+ +L  S+ VEVQGD++RKRD W  W+P++++  
Sbjct: 307 EEGWVPTKIIAGFKRVKAMTMDVDFIVYALGFSNSVEVQGDQIRKRDKWSDWIPASKKST 366

Query: 447 DSSSMSTGESN 457
            + ++  G+ +
Sbjct: 367 SAETIGDGDKD 377


>AT5G21160.2 | Symbols:  | LA RNA-binding protein |
           chr5:7198817-7203879 REVERSE LENGTH=832
          Length = 832

 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/191 (38%), Positives = 102/191 (53%), Gaps = 30/191 (15%)

Query: 281 DARAPQQRMSPRGLMRFPPANAAPPFMGPQPLQPFL---NPAGFPEFYYFPTLQLESFGR 337
           D R   Q   PR   R       PPFMGP P   FL    P      YY P       G 
Sbjct: 203 DPRNMPQGAGPRNFGR-------PPFMGPAP--GFLVGPGPGFPGPVYYLP-------GP 246

Query: 338 MPFFTHAPPPAMF--FPVAETP---------LTDVIIKQIDYYFSDTNLVKDNYLRSNMD 386
            P     P P  F  +PV + P         L D ++KQ++YYFSD NL  D+YL S MD
Sbjct: 247 PPGAIRGPYPPRFAPYPVNQGPPILSPEKLDLRDRVLKQVEYYFSDENLENDHYLISLMD 306

Query: 387 EQGWVPITLIANFPRVKSLTSNVELILDSLKTSSVVEVQGDKLRKRDDWMKWLPSTQREV 446
           E+GWVP  +IA F RVK++T +V+ I+ +L  S+ VEVQGD++RKRD W  W+P++++  
Sbjct: 307 EEGWVPTKIIAGFKRVKAMTMDVDFIVYALGFSNSVEVQGDQIRKRDKWSDWIPASKKST 366

Query: 447 DSSSMSTGESN 457
            + ++  G+ +
Sbjct: 367 SAETIGDGDKD 377


>AT5G21160.3 | Symbols:  | LA RNA-binding protein |
           chr5:7198817-7203879 REVERSE LENGTH=833
          Length = 833

 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/191 (38%), Positives = 102/191 (53%), Gaps = 30/191 (15%)

Query: 281 DARAPQQRMSPRGLMRFPPANAAPPFMGPQPLQPFL---NPAGFPEFYYFPTLQLESFGR 337
           D R   Q   PR   R       PPFMGP P   FL    P      YY P       G 
Sbjct: 203 DPRNMPQGAGPRNFGR-------PPFMGPAP--GFLVGPGPGFPGPVYYLP-------GP 246

Query: 338 MPFFTHAPPPAMF--FPVAETP---------LTDVIIKQIDYYFSDTNLVKDNYLRSNMD 386
            P     P P  F  +PV + P         L D ++KQ++YYFSD NL  D+YL S MD
Sbjct: 247 PPGAIRGPYPPRFAPYPVNQGPPILSPEKLDLRDRVLKQVEYYFSDENLENDHYLISLMD 306

Query: 387 EQGWVPITLIANFPRVKSLTSNVELILDSLKTSSVVEVQGDKLRKRDDWMKWLPSTQREV 446
           E+GWVP  +IA F RVK++T +V+ I+ +L  S+ VEVQGD++RKRD W  W+P++++  
Sbjct: 307 EEGWVPTKIIAGFKRVKAMTMDVDFIVYALGFSNSVEVQGDQIRKRDKWSDWIPASKKST 366

Query: 447 DSSSMSTGESN 457
            + ++  G+ +
Sbjct: 367 SAETIGDGDKD 377


>AT5G46250.1 | Symbols:  | RNA-binding protein |
           chr5:18755388-18758056 FORWARD LENGTH=422
          Length = 422

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 54/85 (63%), Gaps = 4/85 (4%)

Query: 348 AMFFPVAETPLTDVIIKQIDYYFSDTNLVKDNYLRSNM--DEQGWVPITLIANFPRVKSL 405
            +  P+ E  L   II+Q++YYFSD NL  D +L + M  +++G+VPI+ IA F ++K L
Sbjct: 95  GVVVPIDE--LNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKL 152

Query: 406 TSNVELILDSLKTSSVVEVQGDKLR 430
           T +  LI+ +LK SS + V  D+ +
Sbjct: 153 TRDHALIVSALKESSFLVVSADEKK 177


>AT5G46250.2 | Symbols:  | RNA-binding protein |
           chr5:18755388-18757723 FORWARD LENGTH=340
          Length = 340

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 53/83 (63%), Gaps = 4/83 (4%)

Query: 348 AMFFPVAETPLTDVIIKQIDYYFSDTNLVKDNYLRSNM--DEQGWVPITLIANFPRVKSL 405
            +  P+ E  L   II+Q++YYFSD NL  D +L + M  +++G+VPI+ IA F ++K L
Sbjct: 95  GVVVPIDE--LNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKL 152

Query: 406 TSNVELILDSLKTSSVVEVQGDK 428
           T +  LI+ +LK SS + V  D+
Sbjct: 153 TRDHALIVSALKESSFLVVSADE 175


>AT5G46250.3 | Symbols:  | RNA-binding protein |
           chr5:18755388-18757723 FORWARD LENGTH=340
          Length = 340

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 53/83 (63%), Gaps = 4/83 (4%)

Query: 348 AMFFPVAETPLTDVIIKQIDYYFSDTNLVKDNYLRSNM--DEQGWVPITLIANFPRVKSL 405
            +  P+ E  L   II+Q++YYFSD NL  D +L + M  +++G+VPI+ IA F ++K L
Sbjct: 95  GVVVPIDE--LNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKL 152

Query: 406 TSNVELILDSLKTSSVVEVQGDK 428
           T +  LI+ +LK SS + V  D+
Sbjct: 153 TRDHALIVSALKESSFLVVSADE 175


>AT3G19090.1 | Symbols:  | RNA-binding protein |
           chr3:6601466-6603709 FORWARD LENGTH=455
          Length = 455

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 51/74 (68%), Gaps = 4/74 (5%)

Query: 362 IIKQIDYYFSDTNLVKDNYLRSNM--DEQGWVPITLIANFPRVKSLTSNVELILDSLKTS 419
           I+KQ++Y F+D +L+ +  +  ++  D +G+VP++ IA+  ++K+LTSN  L+  +L++S
Sbjct: 148 IVKQVEYQFTDMSLLANESISKHISKDPEGYVPVSYIASTKKIKALTSNHHLVSLALRSS 207

Query: 420 S--VVEVQGDKLRK 431
           S  VV   G K+++
Sbjct: 208 SKLVVSEDGKKVKR 221