Miyakogusa Predicted Gene

Lj1g3v2184140.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2184140.1 Non Chatacterized Hit- tr|I1HFP9|I1HFP9_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,53.93,5e-19,coiled-coil,NULL; seg,NULL,CUFF.28693.1
         (231 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G19990.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   104   6e-23
AT5G11600.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    99   2e-21

>AT1G19990.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: cultured cell;
           BEST Arabidopsis thaliana protein match is: unknown
           protein (TAIR:AT5G11600.1); Has 11256 Blast hits to 7192
           proteins in 541 species: Archae - 6; Bacteria - 629;
           Metazoa - 4714; Fungi - 936; Plants - 545; Viruses - 34;
           Other Eukaryotes - 4392 (source: NCBI BLink). |
           chr1:6935327-6936665 FORWARD LENGTH=251
          Length = 251

 Score =  104 bits (259), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 45/60 (75%), Positives = 54/60 (90%)

Query: 92  YDLPGQKRDPPEEKDPLRIFYETLYEQIPSSEMSQIWLMESGLLPKETALKVFEKKQKKG 151
           YDLPGQKR+ P+E+DPLRIFYE+LY+QIP+S+M+QIWLMESGLLP E A KV EKK +KG
Sbjct: 115 YDLPGQKREQPDERDPLRIFYESLYKQIPTSDMAQIWLMESGLLPAEKAKKVLEKKLQKG 174


>AT5G11600.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11
           growth stages; BEST Arabidopsis thaliana protein match
           is: unknown protein (TAIR:AT1G19990.1); Has 1807 Blast
           hits to 1807 proteins in 277 species: Archae - 0;
           Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
           Viruses - 0; Other Eukaryotes - 339 (source: NCBI
           BLink). | chr5:3733815-3735015 REVERSE LENGTH=242
          Length = 242

 Score = 99.4 bits (246), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 44/65 (67%), Positives = 53/65 (81%)

Query: 86  KREKKVYDLPGQKRDPPEEKDPLRIFYETLYEQIPSSEMSQIWLMESGLLPKETALKVFE 145
           KREKKVY L GQK DPPEE++PLRIFYE+L +QIP SEM++ WLME G+L  E A + FE
Sbjct: 116 KREKKVYSLAGQKFDPPEEREPLRIFYESLSKQIPGSEMAEFWLMEHGMLSPEKAKRAFE 175

Query: 146 KKQKK 150
           KKQ+K
Sbjct: 176 KKQRK 180