Miyakogusa Predicted Gene

Lj1g3v2173030.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2173030.1 Non Chatacterized Hit- tr|I1JT37|I1JT37_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,71.23,0.0000000000004,seg,NULL,CUFF.28681.1
         (121 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G75717.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    57   3e-09

>AT1G75717.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; Has 30201 Blast hits to
           17322 proteins in 780 species: Archae - 12; Bacteria -
           1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr1:28433977-28434261 FORWARD LENGTH=94
          Length = 94

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 41/72 (56%), Gaps = 3/72 (4%)

Query: 38  MKLFNRLRKILMSLIFLV---PSRRSMTDSTHKNHPDRFEPPKTXXXXXXXXXXXXXNEA 94
           MKLF++L KILM LI       SRR   +++     +RFEPPK              +EA
Sbjct: 1   MKLFHKLGKILMRLIDFTLHSSSRRQKKNNSRSGDGERFEPPKISCSSSYYSSHVHYSEA 60

Query: 95  IADCIEFFNKSA 106
           IADCIEFFNKS+
Sbjct: 61  IADCIEFFNKSS 72