Miyakogusa Predicted Gene

Lj1g3v2172910.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2172910.1 Non Chatacterized Hit- tr|D8T0B3|D8T0B3_SELML
Putative uncharacterized protein E2F1-2
OS=Selaginella,42.28,2e-19,seg,NULL; TRANSCRIPTION FACTOR E2F,NULL;
TRANSCRIPTION FACTOR E2F,E2F Family; coiled-coil,NULL;
E2F-,CUFF.28683.1
         (153 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G47870.2 | Symbols: ATE2F2 | winged-helix DNA-binding transcr...   112   9e-26
AT1G47870.1 | Symbols: E2FC, ATE2F2, ATE2FC | winged-helix DNA-b...   112   9e-26
AT2G36010.1 | Symbols: E2F3, ATE2FA | E2F transcription factor 3...   103   3e-23
AT2G36010.3 | Symbols: E2F3, ATE2FA | E2F transcription factor 3...   101   2e-22
AT5G22220.3 | Symbols: E2F1, E2FB, ATE2FB | E2F transcription fa...    99   9e-22
AT5G22220.2 | Symbols: E2F1, E2FB, ATE2FB | E2F transcription fa...    99   1e-21
AT2G36010.2 | Symbols: E2F3, ATE2FA | E2F transcription factor 3...    92   9e-20

>AT1G47870.2 | Symbols: ATE2F2 | winged-helix DNA-binding
           transcription factor family protein |
           chr1:17634937-17637557 FORWARD LENGTH=395
          Length = 395

 Score =  112 bits (280), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 57/122 (46%), Positives = 80/122 (65%), Gaps = 2/122 (1%)

Query: 3   LKNRGCDGLGPRELDDQVNCLKAEIESLYAEECELEDCIXXXXXXXXXXXXXXXSQKYLF 62
           ++ +G D LG ++L DQ++ LK+E+ES+ +EE  L+D I                ++Y+F
Sbjct: 215 IRWKGADNLGQKDLGDQISRLKSEVESMQSEESRLDDLIRERQEALRSLEEDDYCRRYMF 274

Query: 63  VNKEDILTLPCFQNQELIAIKAPKASVIEVPDPDEELGFRQRQYKMTVRSATGPIHLYHL 122
           + +EDI +LP FQNQ L+AIKAP AS IEVPDPD E+ F Q QY+M +RS  GPI +Y L
Sbjct: 275 MTEEDITSLPRFQNQTLLAIKAPTASYIEVPDPD-EMSFPQ-QYRMVIRSRMGPIDVYLL 332

Query: 123 RK 124
            K
Sbjct: 333 SK 334


>AT1G47870.1 | Symbols: E2FC, ATE2F2, ATE2FC | winged-helix
           DNA-binding transcription factor family protein |
           chr1:17634937-17637557 FORWARD LENGTH=396
          Length = 396

 Score =  112 bits (280), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 57/122 (46%), Positives = 80/122 (65%), Gaps = 2/122 (1%)

Query: 3   LKNRGCDGLGPRELDDQVNCLKAEIESLYAEECELEDCIXXXXXXXXXXXXXXXSQKYLF 62
           ++ +G D LG ++L DQ++ LK+E+ES+ +EE  L+D I                ++Y+F
Sbjct: 216 IRWKGADNLGQKDLGDQISRLKSEVESMQSEESRLDDLIRERQEALRSLEEDDYCRRYMF 275

Query: 63  VNKEDILTLPCFQNQELIAIKAPKASVIEVPDPDEELGFRQRQYKMTVRSATGPIHLYHL 122
           + +EDI +LP FQNQ L+AIKAP AS IEVPDPD E+ F Q QY+M +RS  GPI +Y L
Sbjct: 276 MTEEDITSLPRFQNQTLLAIKAPTASYIEVPDPD-EMSFPQ-QYRMVIRSRMGPIDVYLL 333

Query: 123 RK 124
            K
Sbjct: 334 SK 335


>AT2G36010.1 | Symbols: E2F3, ATE2FA | E2F transcription factor 3 |
           chr2:15119688-15122893 FORWARD LENGTH=483
          Length = 483

 Score =  103 bits (258), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 56/126 (44%), Positives = 77/126 (61%), Gaps = 1/126 (0%)

Query: 6   RGCDGLGPRELDDQVNCLKAEIESLYAEECELEDCIXXXXXXXXXXXXXXXSQKYLFVNK 65
           +G D   P + D  V+ L+AEIE+L  EE  L++ I               +QK+LFV +
Sbjct: 231 KGVDAC-PGDEDADVSVLQAEIENLALEEQALDNQIRQTEERLRDLSENEKNQKWLFVTE 289

Query: 66  EDILTLPCFQNQELIAIKAPKASVIEVPDPDEELGFRQRQYKMTVRSATGPIHLYHLRKQ 125
           EDI +LP FQNQ LIA+KAP  + +EVPDPDE     QR+Y++ +RS  GPI +Y + + 
Sbjct: 290 EDIKSLPGFQNQTLIAVKAPHGTTLEVPDPDEAADHPQRRYRIILRSTMGPIDVYLVSEF 349

Query: 126 ERKFED 131
           E KFED
Sbjct: 350 EGKFED 355


>AT2G36010.3 | Symbols: E2F3, ATE2FA | E2F transcription factor 3 |
           chr2:15119688-15122893 FORWARD LENGTH=485
          Length = 485

 Score =  101 bits (251), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 56/127 (44%), Positives = 76/127 (59%), Gaps = 1/127 (0%)

Query: 6   RGCDGL-GPRELDDQVNCLKAEIESLYAEECELEDCIXXXXXXXXXXXXXXXSQKYLFVN 64
           +G D   G  + D  V  L+AEIE+L  EE  L++ I               +QK+LFV 
Sbjct: 231 KGVDACPGDEDADVSVLQLQAEIENLALEEQALDNQIRQTEERLRDLSENEKNQKWLFVT 290

Query: 65  KEDILTLPCFQNQELIAIKAPKASVIEVPDPDEELGFRQRQYKMTVRSATGPIHLYHLRK 124
           +EDI +LP FQNQ LIA+KAP  + +EVPDPDE     QR+Y++ +RS  GPI +Y + +
Sbjct: 291 EEDIKSLPGFQNQTLIAVKAPHGTTLEVPDPDEAADHPQRRYRIILRSTMGPIDVYLVSE 350

Query: 125 QERKFED 131
            E KFED
Sbjct: 351 FEGKFED 357


>AT5G22220.3 | Symbols: E2F1, E2FB, ATE2FB | E2F transcription
           factor 1 | chr5:7360749-7364120 FORWARD LENGTH=466
          Length = 466

 Score = 99.4 bits (246), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 55/133 (41%), Positives = 78/133 (58%), Gaps = 5/133 (3%)

Query: 3   LKNR----GCDGLGPRELDDQVNCLKAEIESLYAEECELEDCIXXXXXXXXXXXXXXXSQ 58
           LKNR    G D   P E  + +  L+ E+++L AEE  L+D I               ++
Sbjct: 186 LKNRIQWKGLDVSKPGETIESIANLQDEVQNLAAEEARLDDQIRESQERLTSLSEDENNK 245

Query: 59  KYLFVNKEDILTLPCFQNQELIAIKAPKASVIEVPDPDEELGFRQRQYKMTVRSATGPIH 118
           + LFV + DI  LPCFQN+ LIA+KAP  + +EVPDPDE  G+ QR+Y++ +RS  GPI 
Sbjct: 246 RLLFVTENDIKNLPCFQNKTLIAVKAPHGTTLEVPDPDEAGGY-QRRYRIILRSTMGPID 304

Query: 119 LYHLRKQERKFED 131
           +Y + + E  FED
Sbjct: 305 VYLVSQFEESFED 317


>AT5G22220.2 | Symbols: E2F1, E2FB, ATE2FB | E2F transcription
           factor 1 | chr5:7360749-7364120 FORWARD LENGTH=469
          Length = 469

 Score = 99.4 bits (246), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/133 (41%), Positives = 78/133 (58%), Gaps = 5/133 (3%)

Query: 3   LKNR----GCDGLGPRELDDQVNCLKAEIESLYAEECELEDCIXXXXXXXXXXXXXXXSQ 58
           LKNR    G D   P E  + +  L+ E+++L AEE  L+D I               ++
Sbjct: 186 LKNRIQWKGLDVSKPGETIESIANLQDEVQNLAAEEARLDDQIRESQERLTSLSEDENNK 245

Query: 59  KYLFVNKEDILTLPCFQNQELIAIKAPKASVIEVPDPDEELGFRQRQYKMTVRSATGPIH 118
           + LFV + DI  LPCFQN+ LIA+KAP  + +EVPDPDE  G+ QR+Y++ +RS  GPI 
Sbjct: 246 RLLFVTENDIKNLPCFQNKTLIAVKAPHGTTLEVPDPDEAGGY-QRRYRIILRSTMGPID 304

Query: 119 LYHLRKQERKFED 131
           +Y + + E  FED
Sbjct: 305 VYLVSQFEESFED 317


>AT2G36010.2 | Symbols: E2F3, ATE2FA | E2F transcription factor 3 |
           chr2:15119688-15122893 FORWARD LENGTH=514
          Length = 514

 Score = 92.4 bits (228), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 54/127 (42%), Positives = 74/127 (58%), Gaps = 18/127 (14%)

Query: 6   RGCDGL-GPRELDDQVNCLKAEIESLYAEECELEDCIXXXXXXXXXXXXXXXSQKYLFVN 64
           +G D   G  + D  V  L+AEIE+L  EE  L++ I                 ++LFV 
Sbjct: 277 KGVDACPGDEDADVSVLQLQAEIENLALEEQALDNQI-----------------RWLFVT 319

Query: 65  KEDILTLPCFQNQELIAIKAPKASVIEVPDPDEELGFRQRQYKMTVRSATGPIHLYHLRK 124
           +EDI +LP FQNQ LIA+KAP  + +EVPDPDE     QR+Y++ +RS  GPI +Y + +
Sbjct: 320 EEDIKSLPGFQNQTLIAVKAPHGTTLEVPDPDEAADHPQRRYRIILRSTMGPIDVYLVSE 379

Query: 125 QERKFED 131
            E KFED
Sbjct: 380 FEGKFED 386