Miyakogusa Predicted Gene

Lj1g3v2157680.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v2157680.2 Non Chatacterized Hit- tr|B9RRN6|B9RRN6_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,45.05,2e-19,TRAM_LAG1_CLN8,TRAM/LAG1/CLN8 homology domain;
TLC,TRAM/LAG1/CLN8 homology domain; SUBFAMILY NOT NAM,CUFF.28673.2
         (143 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10360.2 | Symbols:  | TRAM, LAG1 and CLN8 (TLC) lipid-sensin...   130   4e-31
AT4G10360.1 | Symbols:  | TRAM, LAG1 and CLN8 (TLC) lipid-sensin...   130   4e-31
AT4G19645.2 | Symbols:  | TRAM, LAG1 and CLN8 (TLC) lipid-sensin...   119   8e-28
AT4G19645.1 | Symbols:  | TRAM, LAG1 and CLN8 (TLC) lipid-sensin...   119   8e-28
AT1G31300.2 | Symbols:  | TRAM, LAG1 and CLN8 (TLC) lipid-sensin...   115   1e-26
AT1G31300.1 | Symbols:  | TRAM, LAG1 and CLN8 (TLC) lipid-sensin...   115   1e-26

>AT4G10360.2 | Symbols:  | TRAM, LAG1 and CLN8 (TLC) lipid-sensing
           domain containing protein | chr4:6420679-6422108 FORWARD
           LENGTH=266
          Length = 266

 Score =  130 bits (326), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 64/129 (49%), Positives = 90/129 (69%), Gaps = 1/129 (0%)

Query: 15  SSDGFVSPSKEIQWLVSVFTGIVFCVIAYRLTAIFSSLLFTGYSKLNSAQKIEWNNRGIS 74
           S DGFVS S+++  L S+ +G + C I Y LT   S LLF+ Y KL+S  ++EWNNRG S
Sbjct: 5   SDDGFVS-SRQLLLLASICSGALMCKIVYDLTRFISPLLFSVYGKLDSKVRMEWNNRGFS 63

Query: 75  TFHALFGAFMSFYLLMLSDFFNDDSQETLVVSRSSTFSNAVLGISIGYFITDLAMILWRF 134
           TFHA+F +  S Y L++SD F+++     V++ ++  S +V+GIS+GYF+ DLAMI W F
Sbjct: 64  TFHAVFTSVASIYFLVISDQFDENVHGDSVINSTTRLSESVMGISLGYFLADLAMIFWYF 123

Query: 135 PALGGLEYV 143
           P LGG+EYV
Sbjct: 124 PTLGGIEYV 132


>AT4G10360.1 | Symbols:  | TRAM, LAG1 and CLN8 (TLC) lipid-sensing
           domain containing protein | chr4:6420679-6422108 FORWARD
           LENGTH=266
          Length = 266

 Score =  130 bits (326), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 64/129 (49%), Positives = 90/129 (69%), Gaps = 1/129 (0%)

Query: 15  SSDGFVSPSKEIQWLVSVFTGIVFCVIAYRLTAIFSSLLFTGYSKLNSAQKIEWNNRGIS 74
           S DGFVS S+++  L S+ +G + C I Y LT   S LLF+ Y KL+S  ++EWNNRG S
Sbjct: 5   SDDGFVS-SRQLLLLASICSGALMCKIVYDLTRFISPLLFSVYGKLDSKVRMEWNNRGFS 63

Query: 75  TFHALFGAFMSFYLLMLSDFFNDDSQETLVVSRSSTFSNAVLGISIGYFITDLAMILWRF 134
           TFHA+F +  S Y L++SD F+++     V++ ++  S +V+GIS+GYF+ DLAMI W F
Sbjct: 64  TFHAVFTSVASIYFLVISDQFDENVHGDSVINSTTRLSESVMGISLGYFLADLAMIFWYF 123

Query: 135 PALGGLEYV 143
           P LGG+EYV
Sbjct: 124 PTLGGIEYV 132


>AT4G19645.2 | Symbols:  | TRAM, LAG1 and CLN8 (TLC) lipid-sensing
           domain containing protein | chr4:10689941-10691298
           REVERSE LENGTH=268
          Length = 268

 Score =  119 bits (298), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 59/114 (51%), Positives = 75/114 (65%), Gaps = 1/114 (0%)

Query: 31  SVFTGIVFCVIAYRLTAIFSSLLFTGYSKLNSAQKIEWNNRGISTFHALFGAFMSFYLLM 90
           SV  GI  C + Y LT +FSS+    YS L   ++IEWNNRGIST HA+F +FM+ Y   
Sbjct: 28  SVLVGICLCKLVYDLTELFSSIHVKSYSALTKIKRIEWNNRGISTVHAIFISFMALYFAF 87

Query: 91  LSDFFNDD-SQETLVVSRSSTFSNAVLGISIGYFITDLAMILWRFPALGGLEYV 143
            SD F+D  S ETL V R+S  S   LG+S+GYF+ DL MI W +P+LGG EY+
Sbjct: 88  FSDLFSDQRSLETLTVFRNSPLSTFGLGVSVGYFLADLGMIFWLYPSLGGSEYI 141


>AT4G19645.1 | Symbols:  | TRAM, LAG1 and CLN8 (TLC) lipid-sensing
           domain containing protein | chr4:10689941-10691298
           REVERSE LENGTH=268
          Length = 268

 Score =  119 bits (298), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 59/114 (51%), Positives = 75/114 (65%), Gaps = 1/114 (0%)

Query: 31  SVFTGIVFCVIAYRLTAIFSSLLFTGYSKLNSAQKIEWNNRGISTFHALFGAFMSFYLLM 90
           SV  GI  C + Y LT +FSS+    YS L   ++IEWNNRGIST HA+F +FM+ Y   
Sbjct: 28  SVLVGICLCKLVYDLTELFSSIHVKSYSALTKIKRIEWNNRGISTVHAIFISFMALYFAF 87

Query: 91  LSDFFNDD-SQETLVVSRSSTFSNAVLGISIGYFITDLAMILWRFPALGGLEYV 143
            SD F+D  S ETL V R+S  S   LG+S+GYF+ DL MI W +P+LGG EY+
Sbjct: 88  FSDLFSDQRSLETLTVFRNSPLSTFGLGVSVGYFLADLGMIFWLYPSLGGSEYI 141


>AT1G31300.2 | Symbols:  | TRAM, LAG1 and CLN8 (TLC) lipid-sensing
           domain containing protein | chr1:11194308-11195955
           FORWARD LENGTH=278
          Length = 278

 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/113 (51%), Positives = 72/113 (63%)

Query: 31  SVFTGIVFCVIAYRLTAIFSSLLFTGYSKLNSAQKIEWNNRGISTFHALFGAFMSFYLLM 90
           SV TGI  C + Y L    S+     Y  L   Q+IEWNNRGIST HA+F + MS Y + 
Sbjct: 37  SVLTGIFLCKVVYDLCHFISNSHSKTYIILTKIQRIEWNNRGISTVHAIFISAMSLYFVF 96

Query: 91  LSDFFNDDSQETLVVSRSSTFSNAVLGISIGYFITDLAMILWRFPALGGLEYV 143
            SD F+D     LVV RSS  S+  LGISIGYF+ DL MI W++P+LGG+EY+
Sbjct: 97  WSDLFSDRWHNDLVVFRSSRLSSLGLGISIGYFLADLGMIFWKYPSLGGIEYI 149


>AT1G31300.1 | Symbols:  | TRAM, LAG1 and CLN8 (TLC) lipid-sensing
           domain containing protein | chr1:11194308-11195955
           FORWARD LENGTH=278
          Length = 278

 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/113 (51%), Positives = 72/113 (63%)

Query: 31  SVFTGIVFCVIAYRLTAIFSSLLFTGYSKLNSAQKIEWNNRGISTFHALFGAFMSFYLLM 90
           SV TGI  C + Y L    S+     Y  L   Q+IEWNNRGIST HA+F + MS Y + 
Sbjct: 37  SVLTGIFLCKVVYDLCHFISNSHSKTYIILTKIQRIEWNNRGISTVHAIFISAMSLYFVF 96

Query: 91  LSDFFNDDSQETLVVSRSSTFSNAVLGISIGYFITDLAMILWRFPALGGLEYV 143
            SD F+D     LVV RSS  S+  LGISIGYF+ DL MI W++P+LGG+EY+
Sbjct: 97  WSDLFSDRWHNDLVVFRSSRLSSLGLGISIGYFLADLGMIFWKYPSLGGIEYI 149